Query psy7618
Match_columns 560
No_of_seqs 255 out of 1903
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 8.7E-92 3E-96 726.2 26.9 343 29-498 3-348 (350)
2 3b6u_A Kinesin-like protein KI 100.0 1.2E-91 4.1E-96 729.1 27.4 350 24-502 15-370 (372)
3 3bfn_A Kinesin-like protein KI 100.0 3.7E-91 1.3E-95 727.4 24.4 345 26-499 17-361 (388)
4 3cob_A Kinesin heavy chain-lik 100.0 3.9E-90 1.3E-94 717.8 30.3 350 27-518 2-352 (369)
5 2y65_A Kinesin, kinesin heavy 100.0 1.8E-90 6.2E-95 720.1 25.5 347 26-517 7-360 (365)
6 1t5c_A CENP-E protein, centrom 100.0 7.7E-90 2.6E-94 712.1 27.0 334 28-498 2-341 (349)
7 1x88_A Kinesin-like protein KI 100.0 2.1E-90 7.3E-95 719.6 22.5 341 27-493 5-358 (359)
8 1goj_A Kinesin, kinesin heavy 100.0 2.2E-89 7.6E-94 710.2 28.5 334 28-498 4-343 (355)
9 2owm_A Nckin3-434, related to 100.0 6E-89 2.1E-93 724.7 28.8 345 26-493 34-421 (443)
10 2wbe_C Bipolar kinesin KRP-130 100.0 3.3E-89 1.1E-93 713.4 24.3 339 26-495 19-371 (373)
11 3lre_A Kinesin-like protein KI 100.0 1.1E-88 3.7E-93 705.8 26.9 335 22-485 2-355 (355)
12 2zfi_A Kinesin-like protein KI 100.0 4.2E-88 1.4E-92 704.0 28.9 333 29-493 3-362 (366)
13 2h58_A Kinesin-like protein KI 100.0 1.2E-87 4E-92 691.5 30.4 325 28-486 2-329 (330)
14 1bg2_A Kinesin; motor protein, 100.0 3.1E-88 1.1E-92 694.3 24.4 318 27-485 4-325 (325)
15 4a14_A Kinesin, kinesin-like p 100.0 1.7E-87 5.7E-92 695.3 27.1 322 26-483 7-344 (344)
16 2heh_A KIF2C protein; kinesin, 100.0 1.6E-87 5.5E-92 699.8 25.1 346 6-488 30-385 (387)
17 2rep_A Kinesin-like protein KI 100.0 2.6E-87 8.8E-92 698.3 26.3 348 17-485 9-376 (376)
18 1v8k_A Kinesin-like protein KI 100.0 5.5E-87 1.9E-91 699.7 24.9 348 6-490 50-407 (410)
19 1ry6_A Internal kinesin; kines 100.0 5.3E-87 1.8E-91 692.9 24.4 330 31-492 1-338 (360)
20 3nwn_A Kinesin-like protein KI 100.0 5.3E-87 1.8E-91 692.6 24.3 332 27-485 21-359 (359)
21 3gbj_A KIF13B protein; kinesin 100.0 1.6E-86 5.4E-91 689.3 27.0 329 30-484 1-349 (354)
22 3t0q_A AGR253WP; kinesin, alph 100.0 3.7E-86 1.3E-90 685.8 27.2 338 28-489 3-348 (349)
23 2nr8_A Kinesin-like protein KI 100.0 5.6E-86 1.9E-90 684.7 24.1 341 18-485 11-358 (358)
24 1f9v_A Kinesin-like protein KA 100.0 1.2E-85 4.1E-90 680.9 25.0 334 29-490 2-346 (347)
25 3u06_A Protein claret segregat 100.0 1.3E-85 4.3E-90 693.2 22.1 341 15-489 44-386 (412)
26 4etp_A Kinesin-like protein KA 100.0 1.9E-85 6.4E-90 692.3 22.4 348 16-490 45-402 (403)
27 3dc4_A Kinesin-like protein NO 100.0 3.3E-84 1.1E-88 668.1 24.5 314 27-490 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 1.6E-77 5.6E-82 680.4 26.7 328 29-486 373-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 4E-32 1.4E-36 228.0 5.4 87 411-497 1-88 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 6.4E-30 2.2E-34 222.3 9.3 83 415-497 1-84 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 8.3E-27 2.8E-31 227.6 3.8 280 13-490 7-294 (298)
32 3ec2_A DNA replication protein 94.6 0.005 1.7E-07 56.5 -0.5 51 82-133 6-56 (180)
33 2w58_A DNAI, primosome compone 93.4 0.019 6.5E-07 53.4 0.8 51 82-133 21-72 (202)
34 2qgz_A Helicase loader, putati 91.8 0.035 1.2E-06 55.8 0.4 51 83-134 121-171 (308)
35 4etp_B Spindle POLE BODY-assoc 91.7 0.069 2.4E-06 52.9 2.3 92 14-124 43-137 (333)
36 1jbk_A CLPB protein; beta barr 86.4 0.21 7.1E-06 44.9 1.3 31 103-133 31-61 (195)
37 3t15_A Ribulose bisphosphate c 86.1 0.2 6.9E-06 49.7 1.1 37 96-132 13-53 (293)
38 2p65_A Hypothetical protein PF 85.1 0.23 7.8E-06 44.5 0.8 31 103-133 31-61 (187)
39 3te6_A Regulatory protein SIR3 84.6 0.21 7E-06 50.4 0.3 22 111-132 41-62 (318)
40 3bos_A Putative DNA replicatio 84.6 0.33 1.1E-05 45.6 1.8 45 83-133 25-70 (242)
41 4b4t_M 26S protease regulatory 84.0 2.5 8.5E-05 44.4 8.3 75 83-157 178-274 (434)
42 3h4m_A Proteasome-activating n 82.3 0.29 9.8E-06 47.8 0.3 51 82-132 13-68 (285)
43 2bjv_A PSP operon transcriptio 82.1 0.3 1E-05 47.3 0.3 45 82-132 2-46 (265)
44 4b4t_K 26S protease regulatory 81.7 2.1 7.3E-05 44.8 6.7 75 83-157 169-265 (428)
45 2r62_A Cell division protease 81.4 0.28 9.7E-06 47.4 -0.1 50 82-132 7-61 (268)
46 3cf0_A Transitional endoplasmi 81.4 0.3 1E-05 48.5 0.1 50 83-132 12-66 (301)
47 1d2n_A N-ethylmaleimide-sensit 80.5 0.65 2.2E-05 45.1 2.1 21 112-132 61-81 (272)
48 1p9r_A General secretion pathw 80.0 0.65 2.2E-05 48.6 2.0 29 105-133 157-185 (418)
49 1l8q_A Chromosomal replication 80.0 0.42 1.4E-05 47.7 0.6 50 82-134 7-56 (324)
50 1f9v_A Kinesin-like protein KA 79.6 0.51 1.7E-05 48.2 1.0 25 285-309 128-152 (347)
51 1x88_A Kinesin-like protein KI 79.2 0.59 2E-05 47.9 1.4 25 285-309 142-166 (359)
52 1ixz_A ATP-dependent metallopr 78.9 0.27 9.2E-06 47.3 -1.3 16 118-133 52-67 (254)
53 3nwn_A Kinesin-like protein KI 78.6 0.7 2.4E-05 47.3 1.7 25 285-309 151-175 (359)
54 1g8p_A Magnesium-chelatase 38 78.4 0.49 1.7E-05 47.5 0.5 43 82-132 20-62 (350)
55 1qde_A EIF4A, translation init 77.9 1.1 3.7E-05 41.9 2.7 24 106-131 44-67 (224)
56 3jvv_A Twitching mobility prot 77.8 0.74 2.5E-05 47.1 1.6 29 105-133 113-141 (356)
57 2wbe_C Bipolar kinesin KRP-130 77.6 0.75 2.6E-05 47.4 1.6 24 286-309 155-178 (373)
58 1bg2_A Kinesin; motor protein, 77.5 0.65 2.2E-05 46.9 1.1 25 284-308 124-148 (325)
59 2rep_A Kinesin-like protein KI 77.4 0.66 2.3E-05 47.8 1.1 25 285-309 165-189 (376)
60 2owm_A Nckin3-434, related to 77.3 0.67 2.3E-05 48.9 1.1 24 285-308 184-207 (443)
61 2h58_A Kinesin-like protein KI 77.2 0.74 2.5E-05 46.6 1.4 25 285-309 125-149 (330)
62 2zfi_A Kinesin-like protein KI 77.1 0.66 2.2E-05 47.7 1.0 24 285-308 137-160 (366)
63 1vec_A ATP-dependent RNA helic 76.7 1.3 4.4E-05 40.6 2.9 24 107-132 34-57 (206)
64 2gxq_A Heat resistant RNA depe 76.6 1.2 4.2E-05 40.7 2.7 24 107-132 32-55 (207)
65 1t5c_A CENP-E protein, centrom 76.5 0.81 2.8E-05 46.7 1.4 24 286-309 122-145 (349)
66 1iy2_A ATP-dependent metallopr 76.5 0.37 1.3E-05 47.1 -1.0 16 118-133 76-91 (278)
67 3d8b_A Fidgetin-like protein 1 76.5 0.39 1.3E-05 49.0 -1.0 20 113-132 115-134 (357)
68 3b9p_A CG5977-PA, isoform A; A 76.4 0.41 1.4E-05 47.1 -0.8 51 82-132 17-71 (297)
69 4a14_A Kinesin, kinesin-like p 76.1 0.84 2.9E-05 46.4 1.5 24 285-308 133-156 (344)
70 2x8a_A Nuclear valosin-contain 76.1 0.33 1.1E-05 47.7 -1.5 50 83-132 7-61 (274)
71 2c9o_A RUVB-like 1; hexameric 76.1 1 3.4E-05 47.6 2.1 45 83-132 34-80 (456)
72 2kjq_A DNAA-related protein; s 76.0 0.67 2.3E-05 41.0 0.6 19 116-134 37-55 (149)
73 2v1u_A Cell division control p 76.0 0.37 1.3E-05 48.8 -1.2 20 113-132 42-61 (387)
74 3b6u_A Kinesin-like protein KI 75.7 0.8 2.7E-05 47.1 1.1 24 285-308 148-171 (372)
75 2chg_A Replication factor C sm 75.5 0.72 2.5E-05 42.3 0.7 21 112-132 35-55 (226)
76 3bfn_A Kinesin-like protein KI 75.5 0.78 2.7E-05 47.4 1.0 25 285-309 146-170 (388)
77 3uk6_A RUVB-like 2; hexameric 75.2 1.1 3.6E-05 45.4 1.9 45 83-132 41-87 (368)
78 2z4s_A Chromosomal replication 75.1 0.82 2.8E-05 48.1 1.1 50 81-134 100-149 (440)
79 3b6e_A Interferon-induced heli 74.9 0.55 1.9E-05 43.3 -0.3 24 108-133 43-66 (216)
80 3bor_A Human initiation factor 74.8 0.92 3.2E-05 43.0 1.3 24 106-131 60-83 (237)
81 4b4t_I 26S protease regulatory 74.8 7.2 0.00025 40.7 8.1 75 83-157 179-275 (437)
82 3dkp_A Probable ATP-dependent 74.5 1.5 5.1E-05 41.6 2.7 23 107-131 60-82 (245)
83 4b4t_J 26S protease regulatory 74.5 0.99 3.4E-05 46.9 1.5 75 83-157 145-241 (405)
84 2nr8_A Kinesin-like protein KI 74.4 0.89 3E-05 46.5 1.1 24 286-309 151-174 (358)
85 3t0q_A AGR253WP; kinesin, alph 74.4 0.83 2.8E-05 46.6 0.9 25 285-309 129-153 (349)
86 3gbj_A KIF13B protein; kinesin 74.0 0.89 3E-05 46.5 1.0 24 285-308 138-161 (354)
87 3u06_A Protein claret segregat 74.0 0.99 3.4E-05 47.1 1.4 25 285-309 184-208 (412)
88 1goj_A Kinesin, kinesin heavy 73.8 0.91 3.1E-05 46.4 1.0 24 285-308 129-152 (355)
89 4etp_A Kinesin-like protein KA 73.6 1.1 3.8E-05 46.6 1.6 26 285-310 184-209 (403)
90 2y65_A Kinesin, kinesin heavy 73.3 0.96 3.3E-05 46.4 1.0 24 285-308 132-155 (365)
91 2pl3_A Probable ATP-dependent 73.0 1.7 5.8E-05 40.9 2.7 24 107-132 56-79 (236)
92 1fnn_A CDC6P, cell division co 72.9 1.3 4.4E-05 44.9 1.9 38 94-132 21-61 (389)
93 3syl_A Protein CBBX; photosynt 72.6 1.6 5.6E-05 42.8 2.6 20 113-132 65-84 (309)
94 3ly5_A ATP-dependent RNA helic 72.5 1.2 4.1E-05 43.1 1.5 24 106-131 84-107 (262)
95 2eyu_A Twitching motility prot 72.3 1.3 4.3E-05 43.2 1.6 21 113-133 23-43 (261)
96 2heh_A KIF2C protein; kinesin, 72.2 1.1 3.7E-05 46.4 1.1 23 285-307 186-208 (387)
97 3iuy_A Probable ATP-dependent 72.0 1.8 6.3E-05 40.4 2.7 24 107-132 51-74 (228)
98 1v8k_A Kinesin-like protein KI 71.9 1.1 3.7E-05 46.7 1.1 23 285-307 206-228 (410)
99 4b4t_H 26S protease regulatory 71.9 2.1 7.2E-05 45.2 3.2 75 83-157 206-302 (467)
100 3co5_A Putative two-component 71.9 1.6 5.5E-05 37.9 2.0 28 105-133 18-45 (143)
101 2qz4_A Paraplegin; AAA+, SPG7, 71.7 2.1 7.3E-05 40.7 3.1 19 114-132 38-56 (262)
102 1u0j_A DNA replication protein 71.6 1.7 5.7E-05 42.5 2.3 31 103-133 89-122 (267)
103 4b4t_L 26S protease subunit RP 71.4 0.74 2.5E-05 48.4 -0.3 50 83-132 178-232 (437)
104 1lv7_A FTSH; alpha/beta domain 71.2 1.8 6.1E-05 41.4 2.4 46 82-132 8-62 (257)
105 2vvg_A Kinesin-2; motor protei 70.7 1.2 4E-05 45.5 1.0 23 285-307 134-156 (350)
106 1wrb_A DJVLGB; RNA helicase, D 70.7 2.1 7E-05 40.8 2.7 25 106-132 53-77 (253)
107 1ry6_A Internal kinesin; kines 70.6 1.3 4.4E-05 45.4 1.2 22 286-307 135-156 (360)
108 3cob_A Kinesin heavy chain-lik 70.4 1.2 4.3E-05 45.6 1.1 24 286-309 125-148 (369)
109 1t6n_A Probable ATP-dependent 70.3 2.1 7.3E-05 39.6 2.7 25 106-132 44-68 (220)
110 3dc4_A Kinesin-like protein NO 70.3 1.3 4.3E-05 45.1 1.1 22 286-307 148-169 (344)
111 3pvs_A Replication-associated 70.1 2 6.8E-05 45.3 2.6 39 93-132 29-67 (447)
112 1tue_A Replication protein E1; 70.0 1.3 4.5E-05 41.7 1.0 28 107-134 48-77 (212)
113 1xwi_A SKD1 protein; VPS4B, AA 69.9 0.86 2.9E-05 45.8 -0.3 50 83-132 9-62 (322)
114 3fmo_B ATP-dependent RNA helic 68.5 2.1 7.1E-05 42.4 2.2 26 106-131 122-147 (300)
115 2oxc_A Probable ATP-dependent 68.4 2.5 8.5E-05 39.7 2.7 24 107-132 55-78 (230)
116 3eie_A Vacuolar protein sortin 68.2 0.93 3.2E-05 45.3 -0.4 50 83-132 15-68 (322)
117 3ber_A Probable ATP-dependent 68.2 2.5 8.5E-05 40.4 2.7 25 106-132 73-97 (249)
118 3fe2_A Probable ATP-dependent 68.0 2.3 7.9E-05 40.3 2.4 24 107-132 60-83 (242)
119 2qby_B CDC6 homolog 3, cell di 67.1 1.7 6E-05 43.9 1.4 38 94-132 24-62 (384)
120 3pfi_A Holliday junction ATP-d 67.0 2.4 8.3E-05 42.2 2.4 44 84-132 27-72 (338)
121 2ewv_A Twitching motility prot 66.9 1.6 5.5E-05 44.8 1.1 28 106-133 127-154 (372)
122 1q0u_A Bstdead; DEAD protein, 66.8 1.8 6.3E-05 40.2 1.4 23 107-131 35-57 (219)
123 3fmp_B ATP-dependent RNA helic 66.7 2.7 9.1E-05 44.2 2.8 26 106-131 122-147 (479)
124 3llm_A ATP-dependent RNA helic 66.4 2.8 9.5E-05 39.6 2.6 27 104-132 67-93 (235)
125 2qp9_X Vacuolar protein sortin 66.2 1.4 4.9E-05 44.8 0.5 50 83-132 48-101 (355)
126 1sxj_D Activator 1 41 kDa subu 66.0 1.5 5.3E-05 43.8 0.7 27 106-132 49-75 (353)
127 3n70_A Transport activator; si 66.0 1.6 5.3E-05 38.0 0.7 20 113-132 22-41 (145)
128 3eiq_A Eukaryotic initiation f 65.6 2.7 9.3E-05 42.8 2.5 26 105-132 69-94 (414)
129 3lre_A Kinesin-like protein KI 65.2 1.7 5.9E-05 44.3 0.9 23 286-308 151-173 (355)
130 3vfd_A Spastin; ATPase, microt 64.1 1.4 4.8E-05 45.3 -0.0 18 115-132 148-165 (389)
131 2fz4_A DNA repair protein RAD2 63.9 2.7 9.3E-05 40.0 2.0 25 107-133 102-126 (237)
132 2qby_A CDC6 homolog 1, cell di 63.7 1.2 4E-05 44.9 -0.7 20 113-132 43-62 (386)
133 1gvn_B Zeta; postsegregational 63.6 3.3 0.00011 40.7 2.6 30 102-131 15-49 (287)
134 3hu3_A Transitional endoplasmi 63.0 2.2 7.6E-05 45.5 1.3 20 113-132 236-255 (489)
135 1njg_A DNA polymerase III subu 62.9 2.1 7.1E-05 39.5 0.9 17 116-132 46-62 (250)
136 4fcw_A Chaperone protein CLPB; 62.6 2.9 0.0001 40.9 2.0 17 116-132 48-64 (311)
137 1iqp_A RFCS; clamp loader, ext 62.6 2.8 9.6E-05 41.2 1.9 22 112-133 43-64 (327)
138 1w5s_A Origin recognition comp 62.5 2.9 9.8E-05 42.7 2.0 25 108-132 40-69 (412)
139 3h1t_A Type I site-specific re 62.5 2.3 7.8E-05 46.2 1.3 28 106-134 190-217 (590)
140 1sxj_C Activator 1 40 kDa subu 62.4 2 6.9E-05 43.1 0.8 25 109-133 40-64 (340)
141 2j0s_A ATP-dependent RNA helic 62.3 3.6 0.00012 42.0 2.7 25 106-132 67-91 (410)
142 3fht_A ATP-dependent RNA helic 61.4 3.4 0.00011 42.0 2.3 27 106-132 55-81 (412)
143 2oap_1 GSPE-2, type II secreti 61.4 2.4 8.2E-05 45.5 1.2 20 112-133 259-278 (511)
144 4b3f_X DNA-binding protein smu 59.2 3 0.0001 46.0 1.5 28 106-134 197-224 (646)
145 2z0m_A 337AA long hypothetical 59.1 4.5 0.00015 39.6 2.7 24 107-132 25-48 (337)
146 1s2m_A Putative ATP-dependent 59.0 4.1 0.00014 41.3 2.4 24 107-132 52-75 (400)
147 3oiy_A Reverse gyrase helicase 59.0 3.3 0.00011 42.5 1.7 23 107-131 30-52 (414)
148 1ofh_A ATP-dependent HSL prote 58.8 2 6.8E-05 42.0 -0.0 18 115-132 50-67 (310)
149 1hqc_A RUVB; extended AAA-ATPa 58.7 3.5 0.00012 40.6 1.8 44 84-132 10-55 (324)
150 3pey_A ATP-dependent RNA helic 58.5 4.1 0.00014 41.0 2.3 26 107-132 36-61 (395)
151 1n0w_A DNA repair protein RAD5 58.4 3 0.0001 39.0 1.2 32 102-133 8-42 (243)
152 2zan_A Vacuolar protein sortin 58.1 1.7 6E-05 45.6 -0.6 17 116-132 168-184 (444)
153 2w6b_A RHO guanine nucleotide 57.2 38 0.0013 24.2 6.3 37 505-541 18-54 (56)
154 4h1g_A Maltose binding protein 55.7 3.8 0.00013 45.8 1.6 25 285-309 506-530 (715)
155 2i4i_A ATP-dependent RNA helic 55.6 5.4 0.00019 40.6 2.7 24 107-132 46-69 (417)
156 3i5x_A ATP-dependent RNA helic 55.4 6.2 0.00021 42.3 3.2 26 106-131 102-127 (563)
157 2db3_A ATP-dependent RNA helic 55.2 5.6 0.00019 41.3 2.7 24 107-132 87-110 (434)
158 3u61_B DNA polymerase accessor 55.1 4 0.00014 40.4 1.5 22 112-133 44-66 (324)
159 3fho_A ATP-dependent RNA helic 54.6 3.3 0.00011 44.2 0.8 25 107-131 150-174 (508)
160 2chq_A Replication factor C sm 54.4 2.7 9.4E-05 41.1 0.1 21 112-132 35-55 (319)
161 1in4_A RUVB, holliday junction 54.3 3.8 0.00013 41.0 1.2 16 117-132 53-68 (334)
162 2r44_A Uncharacterized protein 53.8 2.4 8.1E-05 42.2 -0.4 25 107-133 40-64 (331)
163 4gp7_A Metallophosphoesterase; 53.7 2.9 0.0001 37.4 0.2 18 116-133 10-27 (171)
164 3b85_A Phosphate starvation-in 53.3 4.3 0.00015 37.9 1.3 26 105-132 14-39 (208)
165 4a74_A DNA repair and recombin 52.9 5 0.00017 37.1 1.7 30 103-132 10-42 (231)
166 1xti_A Probable ATP-dependent 52.6 6.5 0.00022 39.5 2.6 25 106-132 38-62 (391)
167 2v1x_A ATP-dependent DNA helic 52.4 6.8 0.00023 42.7 2.9 24 106-131 52-75 (591)
168 1c4o_A DNA nucleotide excision 52.2 5.6 0.00019 44.1 2.2 46 83-134 2-47 (664)
169 2p5t_B PEZT; postsegregational 52.0 6.3 0.00021 37.7 2.3 16 116-131 33-48 (253)
170 1sxj_B Activator 1 37 kDa subu 51.9 4.9 0.00017 39.3 1.5 21 112-132 39-59 (323)
171 1sxj_E Activator 1 40 kDa subu 51.7 3.9 0.00013 40.9 0.8 16 118-133 39-54 (354)
172 4a2p_A RIG-I, retinoic acid in 51.1 6.9 0.00024 41.5 2.7 25 106-132 15-39 (556)
173 1rif_A DAR protein, DNA helica 51.1 5 0.00017 38.9 1.4 25 107-133 122-146 (282)
174 2w0m_A SSO2452; RECA, SSPF, un 51.1 4.2 0.00015 37.5 0.9 31 103-133 8-41 (235)
175 1w36_D RECD, exodeoxyribonucle 51.0 4.6 0.00016 44.3 1.2 20 115-134 164-183 (608)
176 1e9r_A Conjugal transfer prote 51.0 3.8 0.00013 42.6 0.6 20 115-134 53-72 (437)
177 1jr3_A DNA polymerase III subu 51.0 5.9 0.0002 39.7 2.0 18 115-132 38-55 (373)
178 3lw7_A Adenylate kinase relate 50.7 4.4 0.00015 35.4 0.9 15 117-131 3-17 (179)
179 4gkp_A Spindle POLE BODY-assoc 50.6 46 0.0016 32.3 8.1 87 21-125 4-92 (275)
180 1ojl_A Transcriptional regulat 50.5 5.2 0.00018 39.6 1.4 19 113-131 23-41 (304)
181 1rz3_A Hypothetical protein rb 50.0 6 0.0002 36.3 1.7 29 104-132 8-39 (201)
182 1qvr_A CLPB protein; coiled co 49.1 3.4 0.00011 47.3 -0.2 32 103-134 179-210 (854)
183 1fuu_A Yeast initiation factor 48.6 5 0.00017 40.4 1.0 25 106-132 51-75 (394)
184 2gk6_A Regulator of nonsense t 48.2 5.4 0.00019 43.8 1.3 27 106-134 188-214 (624)
185 2ykg_A Probable ATP-dependent 48.1 8.1 0.00028 42.6 2.7 23 107-131 22-44 (696)
186 3c8u_A Fructokinase; YP_612366 48.0 5.6 0.00019 36.7 1.2 28 105-132 10-39 (208)
187 3sqw_A ATP-dependent RNA helic 47.7 9.7 0.00033 41.1 3.2 26 106-131 51-76 (579)
188 3pxg_A Negative regulator of g 47.3 7.5 0.00026 41.0 2.2 29 106-134 192-220 (468)
189 3tbk_A RIG-I helicase domain; 47.2 8.7 0.0003 40.6 2.7 24 107-132 13-36 (555)
190 1gm5_A RECG; helicase, replica 47.1 5.6 0.00019 44.9 1.2 24 109-132 383-406 (780)
191 2gza_A Type IV secretion syste 46.8 6.1 0.00021 40.2 1.3 19 112-132 174-192 (361)
192 1kgd_A CASK, peripheral plasma 46.8 4.4 0.00015 36.5 0.2 16 117-132 7-22 (180)
193 2b8t_A Thymidine kinase; deoxy 46.6 4.1 0.00014 38.6 -0.0 20 115-134 12-31 (223)
194 1um8_A ATP-dependent CLP prote 46.6 4.4 0.00015 41.2 0.2 18 115-132 72-89 (376)
195 3upu_A ATP-dependent DNA helic 46.6 6.4 0.00022 41.3 1.5 36 92-132 27-62 (459)
196 3tau_A Guanylate kinase, GMP k 46.5 4.8 0.00017 37.2 0.5 17 116-132 9-25 (208)
197 1qhx_A CPT, protein (chloramph 46.4 5.7 0.00019 35.2 0.9 16 116-131 4-19 (178)
198 1ly1_A Polynucleotide kinase; 46.2 5.7 0.0002 35.1 0.9 16 116-131 3-18 (181)
199 2r8r_A Sensor protein; KDPD, P 46.1 4 0.00014 38.8 -0.2 20 115-134 6-25 (228)
200 2cvh_A DNA repair and recombin 46.0 9.4 0.00032 34.9 2.4 31 103-133 5-38 (220)
201 4gl2_A Interferon-induced heli 45.6 8.5 0.00029 42.4 2.4 25 106-132 15-39 (699)
202 3tr0_A Guanylate kinase, GMP k 45.5 4.7 0.00016 36.7 0.2 16 117-132 9-24 (205)
203 2jlq_A Serine protease subunit 45.5 4.5 0.00015 42.4 0.1 24 107-131 12-35 (451)
204 1sxj_A Activator 1 95 kDa subu 44.9 5 0.00017 42.9 0.3 17 116-132 78-94 (516)
205 3trf_A Shikimate kinase, SK; a 44.9 6.2 0.00021 35.2 0.9 15 117-131 7-21 (185)
206 2orw_A Thymidine kinase; TMTK, 44.7 4.3 0.00015 37.0 -0.2 18 117-134 5-22 (184)
207 3sop_A Neuronal-specific septi 44.7 5.4 0.00018 38.8 0.5 19 114-132 1-19 (270)
208 4ag6_A VIRB4 ATPase, type IV s 44.7 4.1 0.00014 41.7 -0.4 20 115-134 35-54 (392)
209 3pxi_A Negative regulator of g 44.3 8.4 0.00029 43.2 2.0 38 94-132 495-538 (758)
210 1hv8_A Putative ATP-dependent 44.2 9.6 0.00033 37.6 2.3 25 107-132 37-61 (367)
211 2qnr_A Septin-2, protein NEDD5 44.0 5.4 0.00019 39.4 0.4 24 109-132 12-35 (301)
212 2ce7_A Cell division protein F 43.9 9.1 0.00031 40.5 2.1 17 116-132 50-66 (476)
213 2fwr_A DNA repair protein RAD2 43.8 9.9 0.00034 39.6 2.4 24 107-132 102-125 (472)
214 3hws_A ATP-dependent CLP prote 43.8 5.9 0.0002 40.0 0.7 18 115-132 51-68 (363)
215 3e70_C DPA, signal recognition 43.7 8.2 0.00028 38.7 1.7 18 115-132 129-146 (328)
216 2qag_C Septin-7; cell cycle, c 43.7 5.3 0.00018 41.6 0.3 23 110-132 26-48 (418)
217 1wp9_A ATP-dependent RNA helic 43.5 6.2 0.00021 40.5 0.7 24 107-133 18-41 (494)
218 1zp6_A Hypothetical protein AT 43.2 5.3 0.00018 35.9 0.2 17 116-132 10-26 (191)
219 1qvr_A CLPB protein; coiled co 43.1 9.3 0.00032 43.6 2.2 17 116-132 589-605 (854)
220 3iij_A Coilin-interacting nucl 43.1 6.3 0.00022 35.1 0.7 15 117-131 13-27 (180)
221 3a00_A Guanylate kinase, GMP k 43.1 5.1 0.00017 36.2 0.0 15 118-132 4-18 (186)
222 1r6b_X CLPA protein; AAA+, N-t 42.9 10 0.00035 42.5 2.5 17 116-132 489-505 (758)
223 1lvg_A Guanylate kinase, GMP k 42.7 5.1 0.00018 36.7 -0.0 16 117-132 6-21 (198)
224 3cf2_A TER ATPase, transitiona 42.5 8.9 0.0003 43.4 1.9 74 83-156 201-296 (806)
225 1rj9_A FTSY, signal recognitio 42.5 5.9 0.0002 39.3 0.4 17 116-132 103-119 (304)
226 1ye8_A Protein THEP1, hypothet 42.2 5.2 0.00018 36.2 -0.0 15 118-132 3-17 (178)
227 1odf_A YGR205W, hypothetical 3 42.0 8.5 0.00029 37.9 1.4 20 113-132 29-48 (290)
228 2dhr_A FTSH; AAA+ protein, hex 42.0 10 0.00035 40.4 2.2 16 117-132 66-81 (499)
229 3nbx_X ATPase RAVA; AAA+ ATPas 41.2 9.6 0.00033 40.6 1.8 25 106-132 34-58 (500)
230 2dr3_A UPF0273 protein PH0284; 41.2 10 0.00036 35.2 1.9 31 103-133 8-41 (247)
231 2xzl_A ATP-dependent helicase 40.4 8.3 0.00028 43.7 1.2 26 107-134 369-394 (802)
232 3b9q_A Chloroplast SRP recepto 40.2 7.6 0.00026 38.5 0.8 17 116-132 101-117 (302)
233 3lfu_A DNA helicase II; SF1 he 39.9 6.6 0.00023 42.9 0.3 20 114-133 21-40 (647)
234 2bdt_A BH3686; alpha-beta prot 39.6 6.6 0.00023 35.3 0.2 16 117-132 4-19 (189)
235 2j41_A Guanylate kinase; GMP, 39.5 6.6 0.00023 35.6 0.2 16 117-132 8-23 (207)
236 2wjy_A Regulator of nonsense t 39.2 9 0.00031 43.4 1.3 27 106-134 364-390 (800)
237 2ehv_A Hypothetical protein PH 38.9 6.9 0.00023 36.6 0.2 18 116-133 31-48 (251)
238 3vaa_A Shikimate kinase, SK; s 38.9 8.6 0.00029 35.0 0.9 15 117-131 27-41 (199)
239 4a2w_A RIG-I, retinoic acid in 38.7 9.5 0.00032 44.0 1.4 24 107-132 257-280 (936)
240 3lnc_A Guanylate kinase, GMP k 38.5 8.2 0.00028 36.0 0.7 16 117-132 29-44 (231)
241 3e1s_A Exodeoxyribonuclease V, 38.4 9.4 0.00032 41.4 1.2 20 115-134 204-223 (574)
242 4a4z_A Antiviral helicase SKI2 38.4 14 0.00047 43.0 2.6 23 107-131 48-70 (997)
243 2px0_A Flagellar biosynthesis 38.3 7 0.00024 38.6 0.2 19 116-134 106-124 (296)
244 3kb2_A SPBC2 prophage-derived 38.2 9.2 0.00032 33.4 1.0 16 117-132 3-18 (173)
245 1r6b_X CLPA protein; AAA+, N-t 38.2 8.6 0.00029 43.1 0.9 29 105-133 197-225 (758)
246 1xx6_A Thymidine kinase; NESG, 38.1 6.3 0.00021 36.3 -0.2 19 116-134 9-27 (191)
247 1znw_A Guanylate kinase, GMP k 37.8 7.4 0.00025 35.8 0.2 16 117-132 22-37 (207)
248 3pxi_A Negative regulator of g 37.6 14 0.00049 41.3 2.6 30 105-134 191-220 (758)
249 1ypw_A Transitional endoplasmi 37.6 15 0.00052 41.6 2.8 75 82-156 200-296 (806)
250 1kht_A Adenylate kinase; phosp 37.5 9.4 0.00032 34.0 0.9 16 116-131 4-19 (192)
251 2pt7_A CAG-ALFA; ATPase, prote 37.5 6.8 0.00023 39.3 -0.1 19 112-132 170-188 (330)
252 1kag_A SKI, shikimate kinase I 37.3 8.8 0.0003 33.7 0.6 15 117-131 6-20 (173)
253 1oyw_A RECQ helicase, ATP-depe 37.3 9.5 0.00033 40.8 1.0 25 106-132 33-57 (523)
254 2ze6_A Isopentenyl transferase 37.0 11 0.00038 36.0 1.4 14 117-130 3-16 (253)
255 3uie_A Adenylyl-sulfate kinase 36.7 14 0.00048 33.6 2.0 20 113-132 23-42 (200)
256 4a2q_A RIG-I, retinoic acid in 36.4 16 0.00053 41.3 2.7 25 106-132 256-280 (797)
257 1lkx_A Myosin IE heavy chain; 36.2 12 0.00043 41.4 1.8 21 112-132 91-111 (697)
258 2rhm_A Putative kinase; P-loop 36.2 10 0.00035 33.9 0.9 16 116-131 6-21 (193)
259 3kta_A Chromosome segregation 36.0 7.7 0.00026 34.6 0.0 16 117-132 28-43 (182)
260 2i3b_A HCR-ntpase, human cance 35.9 7.6 0.00026 35.6 -0.0 16 117-132 3-18 (189)
261 1uf9_A TT1252 protein; P-loop, 35.3 13 0.00043 33.5 1.4 20 112-131 5-24 (203)
262 1v5w_A DMC1, meiotic recombina 35.3 19 0.00065 36.1 2.8 32 102-133 106-140 (343)
263 1z6g_A Guanylate kinase; struc 35.2 7.9 0.00027 36.1 -0.0 15 118-132 26-40 (218)
264 1f2t_A RAD50 ABC-ATPase; DNA d 35.2 14 0.00049 32.1 1.7 16 117-132 25-40 (149)
265 2d7d_A Uvrabc system protein B 35.1 15 0.00051 40.5 2.2 47 83-134 5-51 (661)
266 2og2_A Putative signal recogni 35.0 10 0.00035 38.6 0.8 17 116-132 158-174 (359)
267 1w9i_A Myosin II heavy chain; 34.5 14 0.00047 41.5 1.8 21 112-132 169-189 (770)
268 1gku_B Reverse gyrase, TOP-RG; 34.1 14 0.00049 43.1 1.9 23 106-130 64-86 (1054)
269 1y63_A LMAJ004144AAA protein; 34.0 12 0.0004 33.7 0.9 15 117-131 12-26 (184)
270 3l4f_A RHO guanine nucleotide 33.9 1.1E+02 0.0036 22.5 5.8 38 505-542 15-52 (61)
271 1tev_A UMP-CMP kinase; ploop, 33.8 12 0.0004 33.4 0.9 16 116-131 4-19 (196)
272 3cm0_A Adenylate kinase; ATP-b 33.8 12 0.0004 33.3 0.9 15 117-131 6-20 (186)
273 1pzn_A RAD51, DNA repair and r 33.8 21 0.00073 35.9 3.0 31 102-132 115-148 (349)
274 2i1q_A DNA repair and recombin 33.5 21 0.00072 35.1 2.8 32 102-133 82-116 (322)
275 2v26_A Myosin VI; calmodulin-b 33.5 15 0.0005 41.5 1.8 21 112-132 137-157 (784)
276 2v6i_A RNA helicase; membrane, 33.4 13 0.00045 38.5 1.3 16 117-132 4-19 (431)
277 3rc3_A ATP-dependent RNA helic 33.2 11 0.00037 41.8 0.7 18 111-130 153-170 (677)
278 2zj8_A DNA helicase, putative 33.0 12 0.0004 41.7 0.9 31 93-132 26-56 (720)
279 2oca_A DAR protein, ATP-depend 32.8 15 0.00052 38.6 1.7 25 107-133 122-146 (510)
280 1vma_A Cell division protein F 32.7 12 0.00041 37.1 0.8 18 116-133 105-122 (306)
281 1uaa_A REP helicase, protein ( 32.6 10 0.00035 41.8 0.3 21 114-134 14-34 (673)
282 1knq_A Gluconate kinase; ALFA/ 32.5 13 0.00043 32.8 0.9 16 116-131 9-24 (175)
283 1e6c_A Shikimate kinase; phosp 32.4 12 0.0004 32.8 0.7 15 117-131 4-18 (173)
284 2p6r_A Afuhel308 helicase; pro 32.3 13 0.00043 41.3 1.0 31 92-132 27-57 (702)
285 2eyq_A TRCF, transcription-rep 32.3 18 0.00062 42.7 2.4 26 106-131 615-640 (1151)
286 1nks_A Adenylate kinase; therm 32.3 13 0.00043 33.1 0.9 15 117-131 3-17 (194)
287 2z43_A DNA repair and recombin 32.3 19 0.00067 35.6 2.3 32 102-133 91-125 (324)
288 2fna_A Conserved hypothetical 32.2 12 0.0004 36.9 0.7 17 116-132 31-47 (357)
289 1kk8_A Myosin heavy chain, str 32.2 15 0.00052 41.7 1.6 21 112-132 166-186 (837)
290 1g8x_A Myosin II heavy chain f 32.1 16 0.00053 42.5 1.7 21 112-132 169-189 (1010)
291 3l9o_A ATP-dependent RNA helic 32.1 17 0.00059 42.7 2.2 24 106-131 192-215 (1108)
292 2qor_A Guanylate kinase; phosp 31.9 14 0.00048 33.7 1.1 15 117-131 14-28 (204)
293 2xgj_A ATP-dependent RNA helic 31.7 18 0.00062 42.1 2.2 31 91-131 87-117 (1010)
294 2r2a_A Uncharacterized protein 31.7 12 0.00042 34.5 0.7 16 117-132 7-22 (199)
295 1w7j_A Myosin VA; motor protei 31.5 16 0.00056 41.1 1.8 21 112-132 153-173 (795)
296 2qmh_A HPR kinase/phosphorylas 31.4 14 0.00049 34.3 1.1 20 113-132 32-51 (205)
297 2vli_A Antibiotic resistance p 31.3 14 0.00047 32.7 0.9 16 116-131 6-21 (183)
298 2qen_A Walker-type ATPase; unk 31.3 13 0.00043 36.6 0.7 17 116-132 32-48 (350)
299 2va8_A SSO2462, SKI2-type heli 31.2 13 0.00045 41.2 0.9 32 92-132 32-63 (715)
300 2ycu_A Non muscle myosin 2C, a 31.2 17 0.00057 42.2 1.8 21 112-132 143-163 (995)
301 2iut_A DNA translocase FTSK; n 31.0 10 0.00035 41.1 -0.0 19 116-134 215-233 (574)
302 3a8t_A Adenylate isopentenyltr 31.0 16 0.00054 36.9 1.4 16 116-131 41-56 (339)
303 1s96_A Guanylate kinase, GMP k 31.0 11 0.00038 35.3 0.2 16 117-132 18-33 (219)
304 3kl4_A SRP54, signal recogniti 30.9 17 0.00057 38.0 1.6 20 115-134 97-116 (433)
305 2bwj_A Adenylate kinase 5; pho 30.9 14 0.00048 33.1 0.9 15 117-131 14-28 (199)
306 2iyv_A Shikimate kinase, SK; t 30.9 13 0.00044 33.0 0.7 14 118-131 5-18 (184)
307 4ddu_A Reverse gyrase; topoiso 30.8 19 0.00066 42.3 2.2 23 106-130 86-108 (1104)
308 2ga8_A Hypothetical 39.9 kDa p 30.7 23 0.00077 36.0 2.5 21 112-132 21-41 (359)
309 3t61_A Gluconokinase; PSI-biol 30.7 13 0.00044 33.7 0.6 16 116-131 19-34 (202)
310 1via_A Shikimate kinase; struc 30.6 13 0.00045 32.8 0.6 15 117-131 6-20 (175)
311 3dm5_A SRP54, signal recogniti 30.6 21 0.00073 37.3 2.4 20 115-134 100-119 (443)
312 1htw_A HI0065; nucleotide-bind 30.6 11 0.00039 33.3 0.2 19 115-133 33-51 (158)
313 2bbw_A Adenylate kinase 4, AK4 30.6 11 0.00039 35.5 0.2 17 116-132 28-44 (246)
314 3asz_A Uridine kinase; cytidin 30.3 11 0.00039 34.3 0.2 16 117-132 8-23 (211)
315 1c9k_A COBU, adenosylcobinamid 30.2 16 0.00054 33.3 1.1 13 118-130 2-14 (180)
316 3foz_A TRNA delta(2)-isopenten 30.1 17 0.00057 36.3 1.4 16 116-131 11-26 (316)
317 3tif_A Uncharacterized ABC tra 30.0 12 0.0004 35.5 0.2 16 117-132 33-48 (235)
318 3a4m_A L-seryl-tRNA(SEC) kinas 29.9 15 0.0005 35.2 0.9 16 116-131 5-20 (260)
319 4eun_A Thermoresistant glucoki 29.9 12 0.0004 34.1 0.2 17 116-132 30-46 (200)
320 3crm_A TRNA delta(2)-isopenten 29.7 20 0.00069 35.8 1.9 15 116-130 6-20 (323)
321 3t5d_A Septin-7; GTP-binding p 29.7 18 0.00063 34.7 1.6 21 112-132 5-25 (274)
322 2pt5_A Shikimate kinase, SK; a 29.7 15 0.00052 31.9 0.9 15 117-131 2-16 (168)
323 3m6a_A ATP-dependent protease 29.4 12 0.00042 40.2 0.2 18 115-132 108-125 (543)
324 2zts_A Putative uncharacterize 29.4 13 0.00045 34.5 0.5 28 104-131 16-46 (251)
325 1xjc_A MOBB protein homolog; s 29.2 12 0.00042 33.6 0.2 17 117-133 6-22 (169)
326 2dfs_A Myosin-5A; myosin-V, in 29.2 19 0.00064 42.2 1.8 34 98-131 139-172 (1080)
327 1t3j_A Mitofusin 1; coiled coi 29.2 1.5E+02 0.005 24.0 6.5 43 506-548 49-91 (96)
328 1zd8_A GTP:AMP phosphotransfer 29.1 14 0.00049 34.2 0.6 15 117-131 9-23 (227)
329 2yhs_A FTSY, cell division pro 29.0 15 0.0005 39.2 0.7 17 116-132 294-310 (503)
330 1yks_A Genome polyprotein [con 28.8 16 0.00055 38.0 1.0 20 111-132 6-25 (440)
331 1ukz_A Uridylate kinase; trans 28.7 16 0.00055 33.0 0.9 16 116-131 16-31 (203)
332 2c95_A Adenylate kinase 1; tra 28.7 16 0.00055 32.6 0.9 16 116-131 10-25 (196)
333 1qf9_A UMP/CMP kinase, protein 28.7 16 0.00055 32.4 0.9 15 117-131 8-22 (194)
334 2z83_A Helicase/nucleoside tri 28.6 17 0.00058 38.0 1.2 15 117-131 23-37 (459)
335 3exa_A TRNA delta(2)-isopenten 28.4 19 0.00064 36.0 1.4 15 117-131 5-19 (322)
336 1w4r_A Thymidine kinase; type 28.2 22 0.00076 32.8 1.8 21 111-131 16-36 (195)
337 2ius_A DNA translocase FTSK; n 28.2 12 0.00042 39.9 -0.0 19 116-134 168-186 (512)
338 2yvu_A Probable adenylyl-sulfa 28.1 19 0.00063 32.1 1.2 17 115-131 13-29 (186)
339 3fb4_A Adenylate kinase; psych 28.1 15 0.00053 33.5 0.7 14 118-131 3-16 (216)
340 4anj_A Unconventional myosin-V 28.0 20 0.00069 41.7 1.8 21 112-132 141-161 (1052)
341 1aky_A Adenylate kinase; ATP:A 27.9 16 0.00053 33.7 0.7 15 117-131 6-20 (220)
342 3ney_A 55 kDa erythrocyte memb 27.6 14 0.00047 34.2 0.2 16 117-132 21-36 (197)
343 4db1_A Myosin-7; S1DC, cardiac 27.5 28 0.00095 39.2 2.7 21 112-132 168-188 (783)
344 3hr8_A Protein RECA; alpha and 27.5 27 0.00092 35.4 2.4 32 102-133 44-79 (356)
345 1g41_A Heat shock protein HSLU 27.4 16 0.00054 38.3 0.7 17 116-132 51-67 (444)
346 1i84_S Smooth muscle myosin he 27.3 17 0.00059 43.0 1.1 21 112-132 166-186 (1184)
347 3aez_A Pantothenate kinase; tr 27.2 20 0.00068 35.6 1.3 19 114-132 89-107 (312)
348 2vhj_A Ntpase P4, P4; non- hyd 27.2 20 0.00067 36.0 1.3 19 116-134 124-142 (331)
349 2zr9_A Protein RECA, recombina 27.2 27 0.00093 35.1 2.4 32 102-133 44-79 (349)
350 2xau_A PRE-mRNA-splicing facto 27.2 22 0.00075 40.0 1.8 23 107-130 102-124 (773)
351 3sr0_A Adenylate kinase; phosp 27.1 16 0.00056 33.8 0.7 13 118-130 3-15 (206)
352 2cdn_A Adenylate kinase; phosp 26.9 20 0.00068 32.4 1.2 18 114-131 19-36 (201)
353 3umf_A Adenylate kinase; rossm 26.9 16 0.00056 34.2 0.6 14 117-130 31-44 (217)
354 3dl0_A Adenylate kinase; phosp 26.7 17 0.00058 33.3 0.7 14 118-131 3-16 (216)
355 2qag_A Septin-2, protein NEDD5 26.6 14 0.00047 37.5 0.0 24 109-132 31-54 (361)
356 4dzo_A Mitotic spindle assembl 26.3 1.1E+02 0.0037 25.9 5.6 34 518-551 8-41 (123)
357 1a5t_A Delta prime, HOLB; zinc 26.2 22 0.00074 35.4 1.4 27 106-132 14-41 (334)
358 1moz_A ARL1, ADP-ribosylation 26.2 26 0.00088 30.6 1.8 26 107-132 9-35 (183)
359 1ak2_A Adenylate kinase isoenz 26.1 18 0.0006 33.8 0.7 16 116-131 17-32 (233)
360 1zu4_A FTSY; GTPase, signal re 25.7 15 0.00053 36.5 0.2 18 116-133 106-123 (320)
361 3auy_A DNA double-strand break 25.7 23 0.0008 35.8 1.6 17 116-132 26-42 (371)
362 1cr0_A DNA primase/helicase; R 25.6 18 0.00061 35.1 0.6 29 105-133 23-53 (296)
363 2if2_A Dephospho-COA kinase; a 25.5 18 0.00062 32.7 0.6 15 117-131 3-17 (204)
364 2jaq_A Deoxyguanosine kinase; 25.4 18 0.00063 32.4 0.6 15 117-131 2-16 (205)
365 2pcj_A ABC transporter, lipopr 25.2 16 0.00054 34.2 0.2 15 118-132 33-47 (224)
366 2v9p_A Replication protein E1; 25.1 16 0.00056 36.2 0.3 17 116-132 127-143 (305)
367 1zak_A Adenylate kinase; ATP:A 25.0 19 0.00064 33.2 0.6 15 117-131 7-21 (222)
368 1g5t_A COB(I)alamin adenosyltr 25.0 15 0.00051 34.0 -0.1 21 114-134 27-47 (196)
369 2pbr_A DTMP kinase, thymidylat 24.8 19 0.00065 31.9 0.6 15 117-131 2-16 (195)
370 2plr_A DTMP kinase, probable t 24.7 19 0.00066 32.4 0.7 16 116-131 5-20 (213)
371 1np6_A Molybdopterin-guanine d 24.6 17 0.00057 32.8 0.2 17 117-133 8-24 (174)
372 1j8m_F SRP54, signal recogniti 24.5 27 0.00092 34.3 1.7 19 116-134 99-117 (297)
373 1zuh_A Shikimate kinase; alpha 24.4 22 0.00074 31.0 0.9 14 117-130 9-22 (168)
374 3d3q_A TRNA delta(2)-isopenten 24.1 25 0.00085 35.4 1.4 16 116-131 8-23 (340)
375 2onk_A Molybdate/tungstate ABC 24.1 17 0.0006 34.5 0.2 16 117-132 26-41 (240)
376 1pjr_A PCRA; DNA repair, DNA r 24.0 17 0.00057 40.6 0.0 20 115-134 24-43 (724)
377 1ex7_A Guanylate kinase; subst 23.8 24 0.00083 32.1 1.1 14 118-131 4-17 (186)
378 1e4v_A Adenylate kinase; trans 23.7 21 0.00071 32.7 0.6 14 118-131 3-16 (214)
379 1cke_A CK, MSSA, protein (cyti 23.7 22 0.00077 32.6 0.9 16 116-131 6-21 (227)
380 3o8b_A HCV NS3 protease/helica 23.7 26 0.00088 38.7 1.5 17 116-132 233-249 (666)
381 3qks_A DNA double-strand break 23.6 29 0.001 31.7 1.7 16 117-132 25-40 (203)
382 2cbz_A Multidrug resistance-as 23.6 18 0.00062 34.2 0.2 16 117-132 33-48 (237)
383 2gno_A DNA polymerase III, gam 23.2 38 0.0013 33.3 2.5 27 106-132 9-35 (305)
384 1jjv_A Dephospho-COA kinase; P 23.2 23 0.0008 32.0 0.9 15 117-131 4-18 (206)
385 1g6h_A High-affinity branched- 23.1 19 0.00064 34.5 0.2 16 117-132 35-50 (257)
386 3gfo_A Cobalt import ATP-bindi 23.1 19 0.00064 35.1 0.2 15 118-132 37-51 (275)
387 2qt1_A Nicotinamide riboside k 23.1 23 0.0008 32.1 0.9 15 117-131 23-37 (207)
388 1ltq_A Polynucleotide kinase; 23.0 23 0.0008 34.2 0.9 16 116-131 3-18 (301)
389 1ji0_A ABC transporter; ATP bi 23.0 19 0.00065 34.1 0.2 16 117-132 34-49 (240)
390 1tq4_A IIGP1, interferon-induc 22.9 19 0.00064 37.4 0.2 17 116-132 70-86 (413)
391 1sq5_A Pantothenate kinase; P- 22.9 31 0.0011 33.9 1.8 20 113-132 78-97 (308)
392 3qf7_A RAD50; ABC-ATPase, ATPa 22.8 29 0.00099 35.1 1.6 16 117-132 25-40 (365)
393 1b0u_A Histidine permease; ABC 22.7 19 0.00066 34.6 0.2 15 118-132 35-49 (262)
394 3fvq_A Fe(3+) IONS import ATP- 22.6 19 0.00066 36.5 0.2 15 118-132 33-47 (359)
395 1sgw_A Putative ABC transporte 22.6 18 0.00061 33.7 -0.0 15 118-132 38-52 (214)
396 4a15_A XPD helicase, ATP-depen 22.5 25 0.00087 38.4 1.2 38 89-132 2-39 (620)
397 2yz2_A Putative ABC transporte 22.4 20 0.00067 34.6 0.2 16 117-132 35-50 (266)
398 2ghi_A Transport protein; mult 22.3 20 0.00068 34.5 0.2 16 117-132 48-63 (260)
399 2ff7_A Alpha-hemolysin translo 22.3 20 0.00068 34.2 0.2 16 117-132 37-52 (247)
400 2z0h_A DTMP kinase, thymidylat 22.2 23 0.0008 31.5 0.7 15 117-131 2-16 (197)
401 3tlx_A Adenylate kinase 2; str 22.1 25 0.00086 33.1 0.9 18 114-131 28-45 (243)
402 3k1j_A LON protease, ATP-depen 22.1 22 0.00075 38.7 0.5 25 106-132 53-77 (604)
403 1mv5_A LMRA, multidrug resista 22.1 20 0.00069 33.9 0.2 16 117-132 30-45 (243)
404 3be4_A Adenylate kinase; malar 22.0 25 0.00086 32.3 0.9 15 117-131 7-21 (217)
405 2yyz_A Sugar ABC transporter, 21.9 20 0.0007 36.3 0.2 15 118-132 32-46 (359)
406 3tqc_A Pantothenate kinase; bi 21.9 25 0.00085 35.1 0.8 16 117-132 94-109 (321)
407 2pez_A Bifunctional 3'-phospho 21.8 29 0.00099 30.6 1.2 15 117-131 7-21 (179)
408 2v3c_C SRP54, signal recogniti 21.8 21 0.0007 37.3 0.2 19 116-134 100-118 (432)
409 3rlf_A Maltose/maltodextrin im 21.6 21 0.00071 36.6 0.2 15 118-132 32-46 (381)
410 2wwf_A Thymidilate kinase, put 21.6 26 0.00089 31.7 0.9 16 116-131 11-26 (212)
411 2olj_A Amino acid ABC transpor 21.6 21 0.00071 34.4 0.2 16 117-132 52-67 (263)
412 1z47_A CYSA, putative ABC-tran 21.5 21 0.00072 36.2 0.2 15 118-132 44-58 (355)
413 2f1r_A Molybdopterin-guanine d 21.5 12 0.00041 33.6 -1.5 16 117-132 4-19 (171)
414 3lda_A DNA repair protein RAD5 21.4 40 0.0014 34.7 2.3 32 102-133 162-196 (400)
415 2ce2_X GTPase HRAS; signaling 21.3 29 0.001 29.2 1.1 15 117-131 5-19 (166)
416 2xb4_A Adenylate kinase; ATP-b 21.3 25 0.00084 32.6 0.6 15 117-131 2-16 (223)
417 2b6h_A ADP-ribosylation factor 21.2 25 0.00085 31.4 0.7 23 110-132 24-46 (192)
418 2pze_A Cystic fibrosis transme 21.2 22 0.00074 33.4 0.2 15 118-132 37-51 (229)
419 4g1u_C Hemin import ATP-bindin 21.2 21 0.00073 34.4 0.2 15 118-132 40-54 (266)
420 1f6b_A SAR1; gtpases, N-termin 21.2 46 0.0016 29.8 2.5 28 105-132 14-42 (198)
421 1vht_A Dephospho-COA kinase; s 21.1 30 0.001 31.6 1.2 16 116-131 5-20 (218)
422 3io5_A Recombination and repai 21.1 47 0.0016 33.2 2.7 29 103-131 10-44 (333)
423 1svm_A Large T antigen; AAA+ f 21.1 37 0.0013 34.6 2.0 17 116-132 170-186 (377)
424 2it1_A 362AA long hypothetical 21.1 22 0.00074 36.2 0.2 16 117-132 31-46 (362)
425 1vpl_A ABC transporter, ATP-bi 21.1 22 0.00074 34.2 0.2 16 117-132 43-58 (256)
426 1g29_1 MALK, maltose transport 21.1 22 0.00074 36.3 0.2 15 118-132 32-46 (372)
427 2nq2_C Hypothetical ABC transp 21.0 22 0.00076 34.0 0.3 15 118-132 34-48 (253)
428 1m7g_A Adenylylsulfate kinase; 21.0 27 0.00094 31.8 0.9 16 116-131 26-41 (211)
429 1u94_A RECA protein, recombina 20.8 43 0.0015 33.8 2.4 32 102-133 46-81 (356)
430 2ged_A SR-beta, signal recogni 20.8 30 0.001 30.5 1.1 19 114-132 47-65 (193)
431 2grj_A Dephospho-COA kinase; T 20.7 31 0.0011 31.4 1.2 18 114-131 11-28 (192)
432 2dyk_A GTP-binding protein; GT 20.6 31 0.0011 29.1 1.1 16 117-132 3-18 (161)
433 2zu0_C Probable ATP-dependent 20.5 23 0.00078 34.2 0.2 16 117-132 48-63 (267)
434 2ixe_A Antigen peptide transpo 20.5 23 0.00078 34.3 0.2 16 117-132 47-62 (271)
435 2ihy_A ABC transporter, ATP-bi 20.4 23 0.00078 34.5 0.2 15 118-132 50-64 (279)
436 2jeo_A Uridine-cytidine kinase 20.3 23 0.00079 33.3 0.2 16 117-132 27-42 (245)
437 1v43_A Sugar-binding transport 20.3 23 0.00079 36.1 0.2 16 117-132 39-54 (372)
438 2d2e_A SUFC protein; ABC-ATPas 20.3 23 0.00079 33.7 0.2 16 117-132 31-46 (250)
439 2qi9_C Vitamin B12 import ATP- 20.3 23 0.00079 33.8 0.2 16 117-132 28-43 (249)
440 2pjz_A Hypothetical protein ST 20.2 23 0.00079 34.1 0.2 16 117-132 32-47 (263)
441 2yv5_A YJEQ protein; hydrolase 20.0 29 0.00099 34.0 0.9 22 109-132 161-182 (302)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=8.7e-92 Score=726.16 Aligned_cols=343 Identities=44% Similarity=0.668 Sum_probs=272.6
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC-CCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK-PRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~-~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
.++|+|+|||||++..|...+...++.+++....+.+..+..... .......+.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 578999999999999998888888888887777777765543111 1123457899999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCcc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPTL 186 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~~ 186 (560)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ...|.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~------------------------ 138 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFL------------------------ 138 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEE------------------------
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEE------------------------
Confidence 99999999999999999999999999999999999999999999887432 33444
Q ss_pred cchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhH
Q psy7618 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 266 (560)
|.+||+|||||+|+|||++.. .
T Consensus 139 ---------------------------------v~vS~~EIYnE~i~DLL~~~~--------~----------------- 160 (350)
T 2vvg_A 139 ---------------------------------VIGSYLELYNEEIRDLIKNNT--------K----------------- 160 (350)
T ss_dssp ---------------------------------EEEEEEEEETTEEEETTTTEE--------E-----------------
T ss_pred ---------------------------------EEEEEEEEeCCEEEEcccCCc--------C-----------------
Confidence 448899999999999986221 0
Q ss_pred HHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHH
Q psy7618 267 EIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346 (560)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~ 346 (560)
++|.+ +..++++|.||+++.|.|++|++.+|..|.
T Consensus 161 ----------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~ 195 (350)
T 2vvg_A 161 ----------------------------LPLKE-----------------DKTRGIYVDGLSMHRVTTAAELSALMDKGF 195 (350)
T ss_dssp ----------------------------ECEEE-----------------ETTTEEEETTCCCEEESSHHHHHHHHHHHH
T ss_pred ----------------------------ceeeE-----------------cCCCCEEecCCEEEEcCCHHHHHHHHHHHH
Confidence 33433 344589999999999999999999999999
Q ss_pred hhcccccccCCCCCCCcEEEEEEEEEEEeCCCC-ceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHH
Q psy7618 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG-KALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI 425 (560)
Q Consensus 347 ~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~-~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI 425 (560)
++|++++|.+|+.|||||+||+|+++......+ .....|+|+|||||||||..++++.|.|++|+.+||+||++||+||
T Consensus 196 ~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI 275 (350)
T 2vvg_A 196 ANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVI 275 (350)
T ss_dssp HHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCCCC---------------CTTHHHHHHHHHH
T ss_pred hccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999988754433 3456899999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchh
Q psy7618 426 SSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDR 498 (560)
Q Consensus 426 ~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~ 498 (560)
.+|..++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|+|+|.+|+++.+.
T Consensus 276 ~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~~~ 348 (350)
T 2vvg_A 276 SKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348 (350)
T ss_dssp HHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCTTC
T ss_pred HHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhccccceecCCchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=1.2e-91 Score=729.06 Aligned_cols=350 Identities=47% Similarity=0.703 Sum_probs=287.2
Q ss_pred CCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccc
Q psy7618 24 NEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSV 103 (560)
Q Consensus 24 ~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~ 103 (560)
......++|+|+|||||++..|...+...++.+++....+.+..+... .....+.|.||+||+++++|++||+.++
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~----~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~ 90 (372)
T 3b6u_A 15 YFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGT----AHEMPKTFTFDAVYDWNAKQFELYDETF 90 (372)
T ss_dssp ------CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCT----TTCCCEEEECSEEECTTCCHHHHHHHTH
T ss_pred ccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCC----CCCCceEEEcCeEeCCcCchHHHHHHHH
Confidence 334568899999999999999988888888888887778887665431 2345689999999999999999999999
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccc
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~ 180 (560)
+|+|+++|+|||+||||||||||||||||+|... ++|||||++++||+.++......|.|.
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~---------------- 154 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVR---------------- 154 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEE----------------
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEE----------------
Confidence 9999999999999999999999999999999654 579999999999999887656666655
Q ss_pred cCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccc
Q psy7618 181 VSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSV 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 260 (560)
+||+|||||+|+|||++.... .
T Consensus 155 -----------------------------------------vS~~EIYnE~i~DLL~~~~~~------~----------- 176 (372)
T 3b6u_A 155 -----------------------------------------ASYLEIYQEEIRDLLSKDQTK------R----------- 176 (372)
T ss_dssp -----------------------------------------EEEEEEETTEEEETTSSCTTC------C-----------
T ss_pred -----------------------------------------EEEEEEeCCEEEECCCCCCCC------C-----------
Confidence 888999999999999754210 0
Q ss_pred ccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHH
Q psy7618 261 TCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIEN 340 (560)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ 340 (560)
++|.+ ++.++++|+||+++.|.|++|++.
T Consensus 177 ----------------------------------l~i~e-----------------~~~~~v~v~gl~~~~v~s~~e~~~ 205 (372)
T 3b6u_A 177 ----------------------------------LELKE-----------------RPDTGVYVKDLSSFVTKSVKEIEH 205 (372)
T ss_dssp ----------------------------------BCEEE-----------------ETTTEEEETTCCCEECCSHHHHHH
T ss_pred ----------------------------------ceEEE-----------------CCCCcEecCCCEEEEecCHHHHHH
Confidence 33333 345589999999999999999999
Q ss_pred HHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeC--CCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhH
Q psy7618 341 CRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNS--KTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSL 418 (560)
Q Consensus 341 ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~--~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL 418 (560)
+|..|.++|++++|.||+.|||||+||+|+|+.... .+......|+|+|||||||||..++++.|.|++|+.+||+||
T Consensus 206 ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL 285 (372)
T 3b6u_A 206 VMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSL 285 (372)
T ss_dssp HHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEECCCCCE----------EEEGGGCCHHH
T ss_pred HHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhH
Confidence 999999999999999999999999999999987643 223356689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccch
Q psy7618 419 LAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYRED 497 (560)
Q Consensus 419 ~aL~~vI~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~ 497 (560)
++||+||.+|..++ .||||||||||+||||+||||++|+||+||||+..+++||++||+||+|||+|+|+|.+|+++.+
T Consensus 286 ~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~ 365 (372)
T 3b6u_A 286 SALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365 (372)
T ss_dssp HHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC----
T ss_pred HHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHH
Confidence 99999999999876 69999999999999999999999999999999999999999999999999999999999998776
Q ss_pred hhhcH
Q psy7618 498 RCHNE 502 (560)
Q Consensus 498 ~~~~~ 502 (560)
.++++
T Consensus 366 ~~~~~ 370 (372)
T 3b6u_A 366 ALLRE 370 (372)
T ss_dssp -----
T ss_pred HHHHh
Confidence 65544
No 3
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-91 Score=727.40 Aligned_cols=345 Identities=33% Similarity=0.498 Sum_probs=248.5
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
....++|+|+|||||++..|...+...++.... ...+.+... ......+.|.||+||+++++|++||+.+++|
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~i~~~------~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~p 89 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMD-SCSLEIANW------RNHQETLKYQFDAFYGERSTQQDIYAGSVQP 89 (388)
T ss_dssp SSCCCCCEEEEEECCCC------------------------------------CEEEEECSEEECTTCCHHHHHHHHTGG
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecC-CCeEEEecC------CCCCCeeEEEcceEecCCCCHhHHHHHHHHH
Confidence 456789999999999999987655554544322 223333221 1223567899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
+|+++|+|||+||||||||||||||||+|++.++|||||++++||+.++.....
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~-------------------------- 143 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAE-------------------------- 143 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTST--------------------------
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhcc--------------------------
Confidence 999999999999999999999999999999999999999999999988763210
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
.....+.|.+||+|||||+|+|||++... .
T Consensus 144 ---------------------------~~~~~~~V~vS~lEIYnE~i~DLL~~~~~-------~---------------- 173 (388)
T 3bfn_A 144 ---------------------------GRPWALSVTMSYLEIYQEKVLDLLDPASG-------D---------------- 173 (388)
T ss_dssp ---------------------------TCSEEEEEEEEEEEEETTEEEESSSCSSC-------B----------------
T ss_pred ---------------------------CCCceEEEEEEEEEEECCeeeehhccCCC-------C----------------
Confidence 00112235589999999999999975421 0
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
+.|+ .+..++++|.||+++.|.|++|++.+|..|
T Consensus 174 -----------------------------l~ir-----------------ed~~~~v~v~gl~~~~V~s~~e~~~ll~~g 207 (388)
T 3bfn_A 174 -----------------------------LVIR-----------------EDCRGNILIPGLSQKPISSFADFERHFLPA 207 (388)
T ss_dssp -----------------------------CCCE-----------------ECTTSCEECTTCCCEECCSHHHHHHHHHHH
T ss_pred -----------------------------ceEE-----------------EcCCCCEEeccceEEEeCCHHHHHHHHHHH
Confidence 2233 344568999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI 425 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI 425 (560)
.++|++++|.||+.|||||+||+|+|.+.....+.....|+|+|||||||||..++++.|.|++|+.+||+||++||+||
T Consensus 208 ~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI 287 (388)
T 3bfn_A 208 SRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVV 287 (388)
T ss_dssp TC-----------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCTTC--------------CCCCHHHHHHHHHH
T ss_pred hhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHH
Confidence 99999999999999999999999999987665554567899999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhh
Q psy7618 426 SSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRC 499 (560)
Q Consensus 426 ~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~ 499 (560)
.+|..++.||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|.+|+......
T Consensus 288 ~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~ 361 (388)
T 3bfn_A 288 DALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHA 361 (388)
T ss_dssp HHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-------------
T ss_pred HHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766543
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.9e-90 Score=717.78 Aligned_cols=350 Identities=36% Similarity=0.539 Sum_probs=299.8
Q ss_pred CCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHH
Q psy7618 27 HQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 106 (560)
Q Consensus 27 ~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~pl 106 (560)
+.+++|+|+|||||++..|...+...++.. .+...+.... ..+..+.|.||+||+++++|++||+. +.|+
T Consensus 2 e~~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~--------~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~l 71 (369)
T 3cob_A 2 DMKGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLW--------KDDKAKQHMYDRVFDGNATQDDVFED-TKYL 71 (369)
T ss_dssp --CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEEC--------TTSCEEEEECSEEECTTCCHHHHHHT-TTHH
T ss_pred CCCCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecC--------CCCCceEEecCEEECCCCCcceehhh-hhhh
Confidence 467899999999999999876554433322 2222232211 22456899999999999999999999 7999
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhcc-CcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKR-HKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~-~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.++.... ..|.
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~----------------------- 128 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFS----------------------- 128 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEE-----------------------
T ss_pred hHhhhcCCceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeE-----------------------
Confidence 9999999999999999999999999999999999999999999998876542 3444
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
|.+||+|||||+|+|||.+.... ...
T Consensus 129 ----------------------------------v~vS~~EIYnE~i~DLL~~~~~~----~~~---------------- 154 (369)
T 3cob_A 129 ----------------------------------LKAYMVELYQDTLVDLLLPKQAK----RLK---------------- 154 (369)
T ss_dssp ----------------------------------EEEEEEEECSSCEEESSCCSSSC----CCC----------------
T ss_pred ----------------------------------EEEEEEEEeCceeeecCCCcccC----Ccc----------------
Confidence 44889999999999999764210 000
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
++|.+ +..++++|.||+++.|.|++|++.+|..|
T Consensus 155 -----------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~~ll~~g 188 (369)
T 3cob_A 155 -----------------------------LDIKK-----------------DSKGMVSVENVTVVSISTYEELKTIIQRG 188 (369)
T ss_dssp -----------------------------CEEEE-----------------CTTSCEEEETCCCEEECSHHHHHHHHHHH
T ss_pred -----------------------------eEEEE-----------------CCCCCEEccCCEEEEeCCHHHHHHHHHHH
Confidence 34443 34568999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI 425 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI 425 (560)
.++|++++|.||+.|||||+||+|++...+...+ ....|+|+|||||||||..++++.|.|++|+.+||+||++||+||
T Consensus 189 ~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI 267 (369)
T 3cob_A 189 SEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQ-AIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVI 267 (369)
T ss_dssp HHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTC-CEEEEEEEEEECCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHH
T ss_pred hhcceeecccCCCCCCcceEEEEEEEEEecCCCC-cEEEEEEEEEeCCCCCcccccCccchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876554 456899999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhhhcHHHH
Q psy7618 426 SSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKM 505 (560)
Q Consensus 426 ~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~~~~~~~ 505 (560)
.+|..++.||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|.|.+|... ++
T Consensus 268 ~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~n~~~--------~e 339 (369)
T 3cob_A 268 SALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--------KE 339 (369)
T ss_dssp HHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCEEC--------HH
T ss_pred HHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcccCCH--------HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999875 46
Q ss_pred HHHHHHHHHHHHh
Q psy7618 506 REKYKKALEDLAQ 518 (560)
Q Consensus 506 ~~~l~~~l~~l~~ 518 (560)
+.+||+++..+++
T Consensus 340 i~~L~~~l~~~~~ 352 (369)
T 3cob_A 340 VARLKKLVSYWKE 352 (369)
T ss_dssp HHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHH
Confidence 7788887766543
No 5
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.8e-90 Score=720.12 Aligned_cols=347 Identities=38% Similarity=0.550 Sum_probs=277.4
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCC--CceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccc
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTT--KKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSV 103 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~--~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~ 103 (560)
...+++|+|+|||||++..|...+...++.+... ..++.+ ..+.|.||+||+++++|++||+.++
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~-------------~~~~f~FD~Vf~~~~~Q~~Vy~~~~ 73 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------AGKVYLFDKVFKPNASQEKVYNEAA 73 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE-------------TTEEEECSEEECTTCCHHHHHHHHT
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE-------------CCEEEeCceEecCCCCHHHHHHHhh
Confidence 3467899999999999999987777767666543 333332 2468999999999999999999999
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhcc
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLL 179 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll 179 (560)
+|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.... ...|.
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~----------------- 136 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFH----------------- 136 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEE-----------------
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEE-----------------
Confidence 9999999999999999999999999999999654 57999999999999887543 33444
Q ss_pred ccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcc
Q psy7618 180 NVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRS 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~ 259 (560)
|.+||+|||||+|+|||++....
T Consensus 137 ----------------------------------------v~vS~~EIYnE~i~DLL~~~~~~----------------- 159 (365)
T 2y65_A 137 ----------------------------------------IKVSYYEIYMDKIRDLLDVSKVN----------------- 159 (365)
T ss_dssp ----------------------------------------EEEEEEEEETTEEEETTCTTCCS-----------------
T ss_pred ----------------------------------------EEEEEEEEECCeeeecccCCcCC-----------------
Confidence 44889999999999999754210
Q ss_pred cccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHH
Q psy7618 260 VTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 339 (560)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~ 339 (560)
+.|.+ +..++++|+||+++.|.|++|++
T Consensus 160 -----------------------------------l~i~e-----------------~~~~~~~v~gl~~~~V~s~~e~~ 187 (365)
T 2y65_A 160 -----------------------------------LSVHE-----------------DKNRVPYVKGATERFVSSPEDVF 187 (365)
T ss_dssp -----------------------------------BCEEE-----------------CSSSCEEETTCCCEEECSHHHHH
T ss_pred -----------------------------------ceEEE-----------------CCCCCEEecCCEEEecCCHHHHH
Confidence 23333 34568999999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHH
Q psy7618 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLL 419 (560)
Q Consensus 340 ~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~ 419 (560)
.+|..|.++|++++|.+|+.|||||+||+|++.+.+...+ ....|+|+|||||||||..++++.|.|++|+.+||+||+
T Consensus 188 ~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~ 266 (365)
T 2y65_A 188 EVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQ-KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 266 (365)
T ss_dssp HHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTC-CEEEEEEEEEECCCCCC----------------CCHHHH
T ss_pred HHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCC-CEeEEEEEEEECCCCCcchhcCCcchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998766554 455799999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC-CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchh
Q psy7618 420 AVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDR 498 (560)
Q Consensus 420 aL~~vI~al~~~-~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~ 498 (560)
+||+||.+|+.+ +.||||||||||+||||+||||++|+||+||||+..+++||++||+||+|||+|+|.|.+|......
T Consensus 267 aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~ 346 (365)
T 2y65_A 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAE 346 (365)
T ss_dssp HHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSH
T ss_pred HHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHH
Confidence 999999999987 5899999999999999999999999999999999999999999999999999999999999876542
Q ss_pred hhcHHHHHHHHHHHHHHHH
Q psy7618 499 CHNEEKMREKYKKALEDLA 517 (560)
Q Consensus 499 ~~~~~~~~~~l~~~l~~l~ 517 (560)
. .+++|++++++++
T Consensus 347 ~-----~~~~~~~e~~~~~ 360 (365)
T 2y65_A 347 E-----WKRRYEKEKEKNA 360 (365)
T ss_dssp H-----HHHC---------
T ss_pred H-----HHHHHHHHHHHHH
Confidence 1 3344555555543
No 6
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=7.7e-90 Score=712.08 Aligned_cols=334 Identities=36% Similarity=0.534 Sum_probs=280.2
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
++++|+|+|||||++..|...+...++.+......+.. ....+.|.||+||+++++|++||+.+++|+|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~-----------~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv 70 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ-----------VDGSKSFNFDRVFHGNETTKNVYEEIAAPII 70 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEE-----------TTSSCEEECSCEECTTSCHHHHHHHTTHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEE-----------CCCCeEEECCEEECCCCCHHHHHHHHHHHHH
Confidence 47899999999999999976655544433333333321 1235689999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCccc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLF 187 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~ 187 (560)
+++++|||+||||||||||||||||+|++.++|||||++++||+.++......|.|.
T Consensus 71 ~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~----------------------- 127 (349)
T 1t5c_A 71 DSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLR----------------------- 127 (349)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEE-----------------------
T ss_pred HHHHcCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEE-----------------------
Confidence 999999999999999999999999999999999999999999998876555455544
Q ss_pred chhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHH
Q psy7618 188 DTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 267 (560)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 267 (560)
+||+|||||+|+|||++.... .
T Consensus 128 ----------------------------------vS~~EIYnE~i~DLL~~~~~~-----~------------------- 149 (349)
T 1t5c_A 128 ----------------------------------VSYMEIYNETITDLLCGTQKM-----K------------------- 149 (349)
T ss_dssp ----------------------------------EEEEEEETTEEEESSSSSCTT-----C-------------------
T ss_pred ----------------------------------EEEEEEeCCEEEEccCCCCCC-----C-------------------
Confidence 889999999999999754210 0
Q ss_pred HHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHh
Q psy7618 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYK 347 (560)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~ 347 (560)
-++|++ +..++++|+||+++.|.|++|++.+|..|.+
T Consensus 150 --------------------------~l~i~e-----------------d~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~ 186 (349)
T 1t5c_A 150 --------------------------PLIIRE-----------------DVNRNVYVADLTEEVVYTSEMALKWITKGEK 186 (349)
T ss_dssp --------------------------CEEEEE-----------------TTTTEEEETTCCCEECSSHHHHHHHHHHHHH
T ss_pred --------------------------CceEEE-----------------CCCCCEEecCCEEEEeCCHHHHHHHHHHhhc
Confidence 044444 3456899999999999999999999999999
Q ss_pred hcccccccCCCCCCCcEEEEEEEEEEEeCCCC----ceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 348 SRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG----KALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 348 ~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~----~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
+|++++|.||+.|||||+||+|.+++.....+ .....|+|+|||||||||..++++.|.|++|+.+||+||++||+
T Consensus 187 ~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~ 266 (349)
T 1t5c_A 187 SRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQ 266 (349)
T ss_dssp TTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGGTC-------CCCSSSCCCHHHHHHHH
T ss_pred ccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCccccccCCccccchhhhHHhHHHHHHHH
Confidence 99999999999999999999999988754322 24567999999999999999999999999999999999999999
Q ss_pred HHHhhhCCC--CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchh
Q psy7618 424 VISSTVAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDR 498 (560)
Q Consensus 424 vI~al~~~~--~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~ 498 (560)
||.+|+.++ .||||||||||+||||+||||++|+|||||||. +++||++||+||+|||+|+|.|.+|+.....
T Consensus 267 vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 267 VIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 999999875 699999999999999999999999999999997 5899999999999999999999999876654
No 7
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.1e-90 Score=719.55 Aligned_cols=341 Identities=42% Similarity=0.667 Sum_probs=276.4
Q ss_pred CCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHH
Q psy7618 27 HQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 106 (560)
Q Consensus 27 ~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~pl 106 (560)
+..++|+|+|||||++..|...+...++.+++....+.+..... ......+.|.||+||+++++|++||+.+++|+
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~----~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 80 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGL----ADKSSRKTYTFDMVFGASTKQIDVYRSVVCPI 80 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEE----TTEEEEEEEECSEEECTTCCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCc----cCCcCceEEeceEEEeccCchhHHHHHHHHHh
Confidence 45789999999999999998888888888887777776643211 11234578999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCC-----------CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhh
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM-----------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKI 175 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~-----------~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~ 175 (560)
|+++|+|||+||||||||||||||||+|+.. .+|||||++++||+.+... ...|.
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~------------- 146 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDN-GTEFS------------- 146 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSS-SEEEE-------------
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhcc-CceEE-------------
Confidence 9999999999999999999999999999764 3699999999999977542 23333
Q ss_pred hhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCC
Q psy7618 176 RDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK 255 (560)
Q Consensus 176 ~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~ 255 (560)
|.+||+|||||+|+|||++..... ..
T Consensus 147 --------------------------------------------v~vS~~EIYnE~i~DLL~~~~~~~----~~------ 172 (359)
T 1x88_A 147 --------------------------------------------VKVSLLEIYNEELFDLLNPSSDVS----ER------ 172 (359)
T ss_dssp --------------------------------------------EEEEEEEEETTEEEETTCTTSCTT----CC------
T ss_pred --------------------------------------------EEEEEEEEeCceeeehhccccccc----cc------
Confidence 458999999999999997653210 00
Q ss_pred CCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCH
Q psy7618 256 GLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 335 (560)
Q Consensus 256 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ 335 (560)
++|++ +...+++++|+||+++.|.|+
T Consensus 173 ---------------------------------------l~i~~---------------~~~~~~~v~v~gl~~~~v~s~ 198 (359)
T 1x88_A 173 ---------------------------------------LQMFD---------------DPRNKRGVIIKGLEEITVHNK 198 (359)
T ss_dssp ---------------------------------------BEEEE---------------ETTEEEEEEEETCCCEEECSG
T ss_pred ---------------------------------------ceEEe---------------ccCCCCCEEEcCCEEEEcCCH
Confidence 34443 222345899999999999999
Q ss_pred HHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeC--CCCceeEeeeeeeeeccCCcccccccCcchhhHHHhH
Q psy7618 336 EEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNS--KTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCE 413 (560)
Q Consensus 336 ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~--~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~ 413 (560)
+|++.+|..|.++|++++|.||+.|||||+||+|+|..... .+......|+|+|||||||||.+++++.|.|++|+.+
T Consensus 199 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~ 278 (359)
T 1x88_A 199 DEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGN 278 (359)
T ss_dssp GGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEEECCCCCC---------------C
T ss_pred HHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhh
Confidence 99999999999999999999999999999999999987643 2334456899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccccc
Q psy7618 414 INLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINF 493 (560)
Q Consensus 414 IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~ 493 (560)
||+||++||+||.+|..+..||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 279 INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 279 INQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999995
No 8
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.2e-89 Score=710.19 Aligned_cols=334 Identities=37% Similarity=0.570 Sum_probs=294.6
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
..++|+|+|||||++..|...+...++.+.+... +.+.. ....+.|.||+||+++++|++||+.+++|+|
T Consensus 4 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~-~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 73 (355)
T 1goj_A 4 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDT-CTVDS---------KEAQGSFTFDRVFDMSCKQSDIFDFSIKPTV 73 (355)
T ss_dssp SSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTE-EEECS---------TTCCEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCeEEEEECCCCChHHhhcCCceEEEEcCCCe-EEEcc---------CCCccEEeeCeEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999998888788888775443 33321 2346789999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccC----CCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccC
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGS----QMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVS 182 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~----~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~ 182 (560)
+++++|||+||||||||||||||||+|+ +.++|||||++++||+.+.... ...|.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~-------------------- 133 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYT-------------------- 133 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEE--------------------
T ss_pred HHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEE--------------------
Confidence 9999999999999999999999999996 3578999999999999886543 33344
Q ss_pred CCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccccc
Q psy7618 183 RPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 262 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
|.+||+|||||+|+|||++....
T Consensus 134 -------------------------------------v~vS~~EIYnE~i~DLL~~~~~~-------------------- 156 (355)
T 1goj_A 134 -------------------------------------VRVSYMEIYMERIRDLLAPQNDN-------------------- 156 (355)
T ss_dssp -------------------------------------EEEEEEEEETTEEEETTSTTCCS--------------------
T ss_pred -------------------------------------EEEEEEEEECCEEEEcccCccCC--------------------
Confidence 44899999999999999755310
Q ss_pred chhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHH
Q psy7618 263 QSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCR 342 (560)
Q Consensus 263 ~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll 342 (560)
+.|.+ +..++++|+||+++.|.|++|++.+|
T Consensus 157 --------------------------------l~i~e-----------------~~~~g~~v~gl~~~~v~s~~e~~~ll 187 (355)
T 1goj_A 157 --------------------------------LPVHE-----------------EKNRGVYVKGLLEIYVSSVQEVYEVM 187 (355)
T ss_dssp --------------------------------CCEEE-----------------ETTTEEEETTCCCEECCSHHHHHHHH
T ss_pred --------------------------------ceeEE-----------------cCCCCEeecCCEEEeCCCHHHHHHHH
Confidence 22332 34458999999999999999999999
Q ss_pred HHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHH
Q psy7618 343 KKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVN 422 (560)
Q Consensus 343 ~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~ 422 (560)
..|.++|++++|.+|+.|||||+||+|++.+.+...+ ....|+|+|||||||||.+++++.|.+++|+.+||+||++||
T Consensus 188 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg 266 (355)
T 1goj_A 188 RRGGNARAVAATNMNQESSRSHSIFVITITQKNVETG-SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 266 (355)
T ss_dssp HHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTT-EEEEEEEEEEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHH
T ss_pred HHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCC-ceeeeEEEEEECCCCCcccccccchhhHHHHHhhhhHHHHHH
Confidence 9999999999999999999999999999998876554 456899999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchh
Q psy7618 423 KVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDR 498 (560)
Q Consensus 423 ~vI~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~ 498 (560)
+||.+|..++ .||||||||||+||||+||||++|+||+||||+..+++||++||+||+|||+|+|+|.+|......
T Consensus 267 ~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 267 MVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp HHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred HHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999864 799999999999999999999999999999999999999999999999999999999999876543
No 9
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=6e-89 Score=724.70 Aligned_cols=345 Identities=36% Similarity=0.545 Sum_probs=277.7
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC-------CCCCCCceeeeCCccccC-------
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK-------PRQPGKARRFTFDAVYGM------- 91 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~-------~~~~~~~~~F~FD~VF~~------- 91 (560)
.+..++|+|+|||||+++.|...+..+++.+++....+.+..+..... .......+.|+||+||++
T Consensus 34 ~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~ 113 (443)
T 2owm_A 34 KDPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEH 113 (443)
T ss_dssp CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTT
T ss_pred CCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCcc
Confidence 456789999999999999998888888888887666666654432110 111234689999999986
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc----cCcEEEEeeh
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK----RHKCIVECCY 167 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~----~~~~~v~~s~ 167 (560)
.++|++||+.++.|+|+++|+|||+||||||||||||||||+|++.++|||||++++||+.+.... ...|.
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~----- 188 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYN----- 188 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEE-----
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEE-----
Confidence 489999999999999999999999999999999999999999999999999999999999887642 23333
Q ss_pred hhhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCccccc
Q psy7618 168 LELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 247 (560)
Q Consensus 168 ~e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~ 247 (560)
|.+||+|||||+|+|||++.....
T Consensus 189 ----------------------------------------------------V~vS~lEIYnE~i~DLL~~~~~~~---- 212 (443)
T 2owm_A 189 ----------------------------------------------------VKVSYFEVYNEHVRDLLAPVVPNK---- 212 (443)
T ss_dssp ----------------------------------------------------EEEEEEEEETTEEEETTSCCCSSC----
T ss_pred ----------------------------------------------------EEEEEEEEECCEeeEccCccccCC----
Confidence 559999999999999997642100
Q ss_pred ccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCC
Q psy7618 248 AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 327 (560)
Q Consensus 248 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL 327 (560)
.. ..++|++ +..++++|+||
T Consensus 213 ~~-------------------------------------------~~l~ire-----------------~~~~g~~V~gl 232 (443)
T 2owm_A 213 PP-------------------------------------------YYLKVRE-----------------SPTEGPYVKDL 232 (443)
T ss_dssp CC-------------------------------------------CCCEEEE-----------------ETTTEEEEETC
T ss_pred cc-------------------------------------------cccceeE-----------------CCCCCEeccCC
Confidence 00 0144544 34568999999
Q ss_pred eEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC---CCceeEeeeeeeeeccCCcccccccCc
Q psy7618 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK---TGKALIHSKLNLVDLAGSECLQKSNAT 404 (560)
Q Consensus 328 ~~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~---~~~~~~~s~L~~VDLAGSEr~~~s~~~ 404 (560)
+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|+|++.... .......|+|+|||||||||..++++.
T Consensus 233 ~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~ 312 (443)
T 2owm_A 233 TEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEAT 312 (443)
T ss_dssp CCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC-------CCEEEEEEEEEECCCCCC-------
T ss_pred EEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCc
Confidence 99999999999999999999999999999999999999999999876321 223456799999999999999999999
Q ss_pred chhhHHHhHhhhhHHHHHHHHHhhhCCC----------------------CCcCCCCCchhhhhccccCCCceEEEEEee
Q psy7618 405 DIRLKECCEINLSLLAVNKVISSTVAGK----------------------TYIPYRDSLLTQLLQDSFGGNAKTLMIANI 462 (560)
Q Consensus 405 g~r~~E~~~IN~SL~aL~~vI~al~~~~----------------------~~iPyRdSkLT~lLqdsLgGnskt~mI~~v 462 (560)
|.|++|+.+||+||++||+||.+|..++ .|||||||||||||||+|||||+|+|||||
T Consensus 313 g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~i 392 (443)
T 2owm_A 313 GQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACI 392 (443)
T ss_dssp -------CCSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEE
T ss_pred cccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEe
Confidence 9999999999999999999999998743 389999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhccccccccccc
Q psy7618 463 GPAASTYKETLVTLEYANRAKKIKNAPNINF 493 (560)
Q Consensus 463 sP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~ 493 (560)
||+ +++||++||+||+|||+|+|+|.+|.
T Consensus 393 SP~--~~~ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 393 SPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp CSS--CHHHHHHHHHHHHHHTTCEECCCCCC
T ss_pred ccc--cHHHHHHHHHHHHHHhhccccceecc
Confidence 997 59999999999999999999999998
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=3.3e-89 Score=713.36 Aligned_cols=339 Identities=38% Similarity=0.622 Sum_probs=274.5
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
....++|+|+|||||++..|...+...++.+.... .+.+.... .....+.|.||+||+++++|++||+.+++|
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~~~~~~------~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~p 91 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPR-EVVTRHTL------DSKLTKKFTFDRSFGPESKQCDVYSVVVSP 91 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTT-EEEESSSS------SSTTCEEEECSEEECTTCCHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCC-eEEEecCC------CCCCceEEeccEEeccccchhHHHHHHHHH
Confidence 35678999999999999999877777777776543 33333221 224568999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccCCC-----------CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhh
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM-----------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGK 174 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~-----------~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~ 174 (560)
+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.++.. ...|.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~------------ 158 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYT------------ 158 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEE------------
T ss_pred HHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEE------------
Confidence 99999999999999999999999999999754 6899999999999987653 23444
Q ss_pred hhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCC
Q psy7618 175 IRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPC 254 (560)
Q Consensus 175 ~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~ 254 (560)
|.+||+|||||+|+|||++.... .
T Consensus 159 ---------------------------------------------v~vS~~EIYnE~i~DLL~~~~~~------~----- 182 (373)
T 2wbe_C 159 ---------------------------------------------MRISYLELYNEELCDLLSTDDTT------K----- 182 (373)
T ss_dssp ---------------------------------------------EEEEEEEEETTEEEESSCTTSCS------C-----
T ss_pred ---------------------------------------------EEEEEEEEeCCeEEECCCCCCCC------C-----
Confidence 44889999999999999754210 0
Q ss_pred CCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCC
Q psy7618 255 KGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQS 334 (560)
Q Consensus 255 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s 334 (560)
+.+++ +...+++++|.||+++.|.|
T Consensus 183 ----------------------------------------l~i~~---------------~~~~~g~v~v~gl~~~~V~s 207 (373)
T 2wbe_C 183 ----------------------------------------IRIFD---------------DSTKKGSVIIQGLEEIPVHS 207 (373)
T ss_dssp ----------------------------------------CCEEE---------------CSSSSSCEEETTCCCEEESS
T ss_pred ----------------------------------------ceeEe---------------ccCCCCcEEecCceEEccCC
Confidence 22322 22245689999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeC--CCCceeEeeeeeeeeccCCcccccccCc-chhhHHH
Q psy7618 335 VEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNS--KTGKALIHSKLNLVDLAGSECLQKSNAT-DIRLKEC 411 (560)
Q Consensus 335 ~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~--~~~~~~~~s~L~~VDLAGSEr~~~s~~~-g~r~~E~ 411 (560)
++|++.+|..|.++|++++|.||+.|||||+||+|.+..... .+......|+|+|||||||||..++++. |.|++|+
T Consensus 208 ~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~ 287 (373)
T 2wbe_C 208 KDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRET 287 (373)
T ss_dssp HHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEEECCCC-----------------
T ss_pred HHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEEECCCCCccccccCccccchhHH
Confidence 999999999999999999999999999999999999987643 2234456899999999999999999987 9999999
Q ss_pred hHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccc
Q psy7618 412 CEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNI 491 (560)
Q Consensus 412 ~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~ 491 (560)
.+||+||++||+||.+|..+..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|+|+|.+
T Consensus 288 ~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~v 367 (373)
T 2wbe_C 288 VNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEV 367 (373)
T ss_dssp ---CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q psy7618 492 NFYR 495 (560)
Q Consensus 492 n~~~ 495 (560)
|...
T Consensus 368 N~~~ 371 (373)
T 2wbe_C 368 NQKL 371 (373)
T ss_dssp CEEC
T ss_pred cccc
Confidence 9753
No 11
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.1e-88 Score=705.76 Aligned_cols=335 Identities=38% Similarity=0.582 Sum_probs=253.5
Q ss_pred CCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCC-CC------------CCCCCCceeeeCCcc
Q psy7618 22 HPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDR-LK------------PRQPGKARRFTFDAV 88 (560)
Q Consensus 22 ~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~-~~------------~~~~~~~~~F~FD~V 88 (560)
+..+++..++|+|+|||||++..|...+...++.+.... .+ +.++... .. .......+.|.||+|
T Consensus 2 ~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~-~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~v 79 (355)
T 3lre_A 2 SVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKH-IL-VFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAV 79 (355)
T ss_dssp ----------CEEEEEECCCCHHHHHTTCCBSEEECSSS-EE-EEC------------------------CCEEEECSEE
T ss_pred CcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecCCc-eE-EecCCCCcceeecccccccccchhccCCCceEEeceE
Confidence 455677889999999999999999988888888776432 22 2222211 00 111235678999999
Q ss_pred ccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeeh
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCY 167 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~ 167 (560)
|+++++|++||+.+++|+|+++|+|||+||||||||||||||||+|++.++|||||++++||+.++... ...|.
T Consensus 80 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~----- 154 (355)
T 3lre_A 80 FDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICS----- 154 (355)
T ss_dssp ECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEE-----
T ss_pred ECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEE-----
Confidence 999999999999999999999999999999999999999999999999999999999999999887643 22333
Q ss_pred hhhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCccccc
Q psy7618 168 LELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 247 (560)
Q Consensus 168 ~e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~ 247 (560)
|.+||+|||||+|+|||.+..+
T Consensus 155 ----------------------------------------------------v~vS~~EIYnE~i~DLL~~~~~------ 176 (355)
T 3lre_A 155 ----------------------------------------------------TAVSYLEVYNEQIRDLLVNSGP------ 176 (355)
T ss_dssp ----------------------------------------------------EEEEEEEEETTEEEESSSCCCC------
T ss_pred ----------------------------------------------------EEEEEEEEECCEEEECcCCCCC------
Confidence 4488999999999999965421
Q ss_pred ccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCC
Q psy7618 248 AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 327 (560)
Q Consensus 248 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL 327 (560)
+.|++ ++..+++|+||
T Consensus 177 -----------------------------------------------l~ire-----------------~~~~~~~v~gl 192 (355)
T 3lre_A 177 -----------------------------------------------LAVRE-----------------DTQKGVVVHGL 192 (355)
T ss_dssp -----------------------------------------------BEEEE-----------------CTTSCEEEETC
T ss_pred -----------------------------------------------ceeEE-----------------cCCCCEEeeee
Confidence 34443 34568999999
Q ss_pred eEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCC--CceeEeeeeeeeeccCCcccccccCcc
Q psy7618 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSECLQKSNATD 405 (560)
Q Consensus 328 ~~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~--~~~~~~s~L~~VDLAGSEr~~~s~~~g 405 (560)
+++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|++++.+... +.....|+|+|||||||||..++++.|
T Consensus 193 ~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g 272 (355)
T 3lre_A 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKG 272 (355)
T ss_dssp CCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC--------
T ss_pred eEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCcc
Confidence 999999999999999999999999999999999999999999999875432 234567999999999999999999999
Q ss_pred hhhHHHhHhhhhHHHHHHHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHh
Q psy7618 406 IRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRA 482 (560)
Q Consensus 406 ~r~~E~~~IN~SL~aL~~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~ra 482 (560)
.|++|+.+||+||++||+||.+|..++ .|||||||||||||||+|||||+|+|||||||+..+++||++||+||+||
T Consensus 273 ~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~ra 352 (355)
T 3lre_A 273 TRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRA 352 (355)
T ss_dssp ---------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998754 59999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy7618 483 KKI 485 (560)
Q Consensus 483 k~I 485 (560)
|+|
T Consensus 353 k~I 355 (355)
T 3lre_A 353 KDI 355 (355)
T ss_dssp C--
T ss_pred ccC
Confidence 987
No 12
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=4.2e-88 Score=703.99 Aligned_cols=333 Identities=37% Similarity=0.572 Sum_probs=271.3
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCC--------Ccchhhhh
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ--------ATQTEIYE 100 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~--------a~Q~~vf~ 100 (560)
.++|+|+|||||++..|...+..+++.++.. .+.+..+.. .....+.|+||+||+++ ++|++||+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~--~~~i~~~~~-----~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~ 75 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGS--TTTIVNPKQ-----PKETPKSFSFDYSYWSHTSPEDINYASQKQVYR 75 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETT--EEEECCTTC-----TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCC--cEEEeccCC-----CCCCceEEecceEeecCccccccccCcHHHHHH
Confidence 3689999999999999988777777777653 334433321 12356899999999987 89999999
Q ss_pred ccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCC--CCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhhhhhh
Q psy7618 101 NSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ--MERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQGKIR 176 (560)
Q Consensus 101 ~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~--~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~~~~~ 176 (560)
.+++|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||+.++... ...|.
T Consensus 76 ~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~-------------- 141 (366)
T 2zfi_A 76 DIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYS-------------- 141 (366)
T ss_dssp HTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEE--------------
T ss_pred HHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEE--------------
Confidence 999999999999999999999999999999999984 478999999999999887643 22333
Q ss_pred hccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCC
Q psy7618 177 DLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKG 256 (560)
Q Consensus 177 dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~ 256 (560)
|.+||+|||||+|+|||++.... .
T Consensus 142 -------------------------------------------v~vS~~EIYnE~v~DLL~~~~~~------~------- 165 (366)
T 2zfi_A 142 -------------------------------------------VEVSYMEIYCERVRDLLNPKNKG------N------- 165 (366)
T ss_dssp -------------------------------------------EEEEEEEEETTEEEETTCTTTCS------C-------
T ss_pred -------------------------------------------EEEEEEEeeCCeEEEccccccCC------C-------
Confidence 44899999999999999765310 0
Q ss_pred CcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHH
Q psy7618 257 LRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 336 (560)
Q Consensus 257 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~e 336 (560)
++|++ ++..+++|+||+++.|.|++
T Consensus 166 --------------------------------------l~ire-----------------~~~~g~~v~gl~~~~V~s~~ 190 (366)
T 2zfi_A 166 --------------------------------------LRVRE-----------------HPLLGPYVEDLSKLAVTSYN 190 (366)
T ss_dssp --------------------------------------BCEEE-----------------ETTTEEEETTCCCEECCSHH
T ss_pred --------------------------------------ceEEE-----------------cCCCCEEEeCCEEEEECCHH
Confidence 33433 33458999999999999999
Q ss_pred HHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCC---CceeEeeeeeeeeccCCcccccccCcchhhHHHhH
Q psy7618 337 EIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT---GKALIHSKLNLVDLAGSECLQKSNATDIRLKECCE 413 (560)
Q Consensus 337 e~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~---~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~ 413 (560)
|++.+|..|.++|++++|.||+.|||||+||+|.+.+..... ......|+|+|||||||||..++++.|.|++|+.+
T Consensus 191 e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~ 270 (366)
T 2zfi_A 191 DIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGAN 270 (366)
T ss_dssp HHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEEEEEEEEEEECCCGGGC------CCCHHHHHH
T ss_pred HHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccceeEeEEEEEeCCCCccccccCCCccchhhhhh
Confidence 999999999999999999999999999999999998764332 12456799999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhCC------------CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHH
Q psy7618 414 INLSLLAVNKVISSTVAG------------KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANR 481 (560)
Q Consensus 414 IN~SL~aL~~vI~al~~~------------~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~r 481 (560)
||+||++||+||.+|+.+ ..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|
T Consensus 271 INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~r 350 (366)
T 2zfi_A 271 INKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADR 350 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHH
Confidence 999999999999999862 47999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccc
Q psy7618 482 AKKIKNAPNINF 493 (560)
Q Consensus 482 ak~Ikn~p~~n~ 493 (560)
||+|+|.|.++-
T Consensus 351 ak~I~~~~~~~~ 362 (366)
T 2zfi_A 351 AKQIRNTVSVNH 362 (366)
T ss_dssp TC----------
T ss_pred HhhccCCCCCCC
Confidence 999999998873
No 13
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.2e-87 Score=691.48 Aligned_cols=325 Identities=37% Similarity=0.570 Sum_probs=272.0
Q ss_pred CCCCeEEEEEeCCCCcchhccC-CccEEEEcCCCce-eEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAH-VENVIKIDTTKKC-LSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~-~~~~v~~~~~~~~-v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
.+++|+|+|||||++..|.... ...++.+++.+.. +.+.. .+..+.|.||+||+++++|++||+. +.|
T Consensus 2 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~ 71 (330)
T 2h58_A 2 SKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLH---------KGKPVSFELDKVFSPQASQQDVFQE-VQA 71 (330)
T ss_dssp ---CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEE---------TTEEEEEECSEEECTTCCHHHHHTT-THH
T ss_pred CCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcC---------CCCeeEEecCeEeCCCCCcHhHHHH-HHH
Confidence 4689999999999998886433 3455666554332 32221 2346789999999999999999998 699
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCC
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRP 184 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~ 184 (560)
+|+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ...|.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~---------------------- 129 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYT---------------------- 129 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEE----------------------
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEE----------------------
Confidence 9999999999999999999999999999999999999999999999887543 33444
Q ss_pred cccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccch
Q psy7618 185 TLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQS 264 (560)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s 264 (560)
|.+||+|||||+|+|||++.... .
T Consensus 130 -----------------------------------v~vS~~EIYnE~i~DLL~~~~~~------~--------------- 153 (330)
T 2h58_A 130 -----------------------------------ITVSAAEIYNEVLRDLLGKEPQE------K--------------- 153 (330)
T ss_dssp -----------------------------------EEEEEEEEETTEEEETTSCSSCC------C---------------
T ss_pred -----------------------------------EEEEEEEEECCChhhcccccccc------c---------------
Confidence 44889999999999999654210 0
Q ss_pred hHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHH
Q psy7618 265 VEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKK 344 (560)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~ 344 (560)
++|.. ..+..++++|+||+++.|.|++|++.+|..
T Consensus 154 ------------------------------l~i~~---------------~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~ 188 (330)
T 2h58_A 154 ------------------------------LEIRL---------------CPDGSGQLYVPGLTEFQVQSVDDINKVFEF 188 (330)
T ss_dssp ------------------------------CCCEE---------------CTTSSCCEECTTCCCEEECSHHHHHHHHHH
T ss_pred ------------------------------ceEEE---------------eecCCCCEecCCCEEEEeCCHHHHHHHHHH
Confidence 11111 234556899999999999999999999999
Q ss_pred HHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHH
Q psy7618 345 GYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKV 424 (560)
Q Consensus 345 g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~v 424 (560)
|.++|++++|.+|+.|||||+||+|+++..+...+ ....|+|+|||||||||..++++.|.|++|+.+||+||++||+|
T Consensus 189 g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~v 267 (330)
T 2h58_A 189 GHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTG-LRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDV 267 (330)
T ss_dssp HHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTT-EEEEEEEEEEECCCCCCCC------HHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCcccccCCCCcCCccEEEEEEEEEEecCCC-cEEEEEEEEEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHH
Confidence 99999999999999999999999999998776554 45689999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccc
Q psy7618 425 ISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIK 486 (560)
Q Consensus 425 I~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ik 486 (560)
|.+|..++.||||||||||+||||+||||++|+||+||||+..+++||++||+||+|||+|+
T Consensus 268 I~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 268 IAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred HHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 14
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.1e-88 Score=694.31 Aligned_cols=318 Identities=37% Similarity=0.568 Sum_probs=281.5
Q ss_pred CCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHH
Q psy7618 27 HQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 106 (560)
Q Consensus 27 ~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~pl 106 (560)
..+++|+|+|||||++..|...+...++.+... ..+.+ ..+.|.||+||+++++|++||+.+++|+
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~-~~~~~-------------~~~~f~FD~Vf~~~~sQ~~Vy~~~~~pl 69 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGE-DTVVI-------------ASKPYAFDRVFQSSTSQEQVYNDCAKKI 69 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETT-TEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCC-CeEEE-------------CCEEEECCeEeCCCCCHHHHHHHHhhhh
Confidence 457899999999999999988777766666543 33333 1368999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccC
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVS 182 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~ 182 (560)
|+++++|||+||||||||||||||||+|+.. .+|||||++++||+.+.... ...|.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~-------------------- 129 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFH-------------------- 129 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEE--------------------
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEE--------------------
Confidence 9999999999999999999999999999754 45999999999999887543 33444
Q ss_pred CCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccccc
Q psy7618 183 RPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 262 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
|.+||+|||||+|+|||++....
T Consensus 130 -------------------------------------v~vS~~EIYnE~v~DLL~~~~~~-------------------- 152 (325)
T 1bg2_A 130 -------------------------------------IKVSYFEIYLDKIRDLLDVSKTN-------------------- 152 (325)
T ss_dssp -------------------------------------EEEEEEEEETTEEEESSCTTCCS--------------------
T ss_pred -------------------------------------EEEEEEEEecCeeeecccCCCCC--------------------
Confidence 44889999999999999754210
Q ss_pred chhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHH
Q psy7618 263 QSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCR 342 (560)
Q Consensus 263 ~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll 342 (560)
+.|++ +..++++|+||+++.|.|++|++.+|
T Consensus 153 --------------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~~ll 183 (325)
T 1bg2_A 153 --------------------------------LSVHE-----------------DKNRVPYVKGCTERFVCSPDEVMDTI 183 (325)
T ss_dssp --------------------------------BCEEE-----------------CTTSCEEETTCCCEEECSHHHHHHHH
T ss_pred --------------------------------ceEEE-----------------CCCCCEEecCceEEeCCCHHHHHHHH
Confidence 33333 34558899999999999999999999
Q ss_pred HHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHH
Q psy7618 343 KKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVN 422 (560)
Q Consensus 343 ~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~ 422 (560)
..|.++|++++|.+|+.|||||+||+|++.+.+...+ ....|+|+|||||||||.+++++.|.|++|+.+||+||++||
T Consensus 184 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg 262 (325)
T 1bg2_A 184 DEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTE-QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALG 262 (325)
T ss_dssp HHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTC-CEEEEEEEEEECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHH
T ss_pred HHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCC-cEEEEEEEEEECCCCCcccccCCccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998766544 455799999999999999999999999999999999999999
Q ss_pred HHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 423 KVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 423 ~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
+||.+|..++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 263 ~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 263 NVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999999999999987
No 15
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=1.7e-87 Score=695.31 Aligned_cols=322 Identities=37% Similarity=0.616 Sum_probs=261.2
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
..++++|+|+|||||++..|...+...++.+.+....+.+ +..+.|.||+||+++++|++||+.++.|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~------------~~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 7 GAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------------GRDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp --CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEE------------TTTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEe------------cccceEEEEEEEecCcchhHHHHHHHHH
Confidence 3467899999999999999988777788887766655544 2357899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccC------CCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGS------QMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLL 179 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~------~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll 179 (560)
+|+++|+|||+||||||||||||||||+|+ ..++|||||++++||+.++......|.|.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~--------------- 139 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVH--------------- 139 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEE---------------
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEE---------------
Confidence 999999999999999999999999999997 36899999999999999887655555555
Q ss_pred ccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcc
Q psy7618 180 NVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRS 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~ 259 (560)
+||+|||||+|+|||++.... ..
T Consensus 140 ------------------------------------------vS~~EIYnE~i~DLL~~~~~~-----~~---------- 162 (344)
T 4a14_A 140 ------------------------------------------VSYLEVYKEEFRDLLEVGTAS-----RD---------- 162 (344)
T ss_dssp ------------------------------------------EEEEEEETTEEEETTSSCCCG-----GG----------
T ss_pred ------------------------------------------EehhhhhHHHHHHHHHhcccc-----cc----------
Confidence 888999999999999754210 00
Q ss_pred cccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHH
Q psy7618 260 VTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 339 (560)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~ 339 (560)
+.|++ +..++++|+||+++.|.|++|++
T Consensus 163 -----------------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~ 190 (344)
T 4a14_A 163 -----------------------------------IQLRE-----------------DERGNVVLCGVKEVDVEGLDEVL 190 (344)
T ss_dssp -----------------------------------CEEEE-----------------CTTSCEEEESCCCEECCSHHHHH
T ss_pred -----------------------------------ceeee-----------------ccCCCEEEEeeeeccccCHHHHH
Confidence 33433 34568999999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC-------CCceeEeeeeeeeeccCCcccccccCcchhhHHHh
Q psy7618 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK-------TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECC 412 (560)
Q Consensus 340 ~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~-------~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~ 412 (560)
.+|..|.++|++++|.+|+.|||||+||+|++++.... .......|+|+|||||||||..++++.|.|++|+.
T Consensus 191 ~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~ 270 (344)
T 4a14_A 191 SLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESI 270 (344)
T ss_dssp HHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCCC--------------
T ss_pred HHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchhhcccCCchhhhhhhe
Confidence 99999999999999999999999999999999886422 12345679999999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 413 EINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 413 ~IN~SL~aL~~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
+||+||++||+||.+|..++ .|||||||||||||||+|||||+|+||+||||+..+++||++||+||+|||
T Consensus 271 ~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 271 QINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred eechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 99999999999999998753 699999999999999999999999999999999999999999999999996
No 16
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.6e-87 Score=699.79 Aligned_cols=346 Identities=34% Similarity=0.490 Sum_probs=265.7
Q ss_pred HHHhhhhhhhccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeC
Q psy7618 6 MKKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTF 85 (560)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~F 85 (560)
++++|+..+.++. .++ +..++++|+|+|||||++..|...+...++.+.. ...+.+..+............+.|.|
T Consensus 30 ~~~~r~~~~~~~~--~~~-~~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~~~v~~~~~~~~~~~~~~~~~F~F 105 (387)
T 2heh_A 30 IKEFRATLECHPL--TMT-DPIEEHRICVCVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPKLKVDLTKYLENQAFCF 105 (387)
T ss_dssp HHHHHHHCCCBCC--CTT-SCCCCCSEEEEEEECCCCHHHHHTTCCBCEECCB-SSEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred HHHHHHhhccCCC--ccC-CCCCCCCeEEEEECCCCChHHhccCCceEEEECC-CCEEEEeCCCccccccccccccEEee
Confidence 4577777766443 333 2344899999999999999998877777777754 34555554433222222224578999
Q ss_pred CccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCC------CCcChHHHHHHHHHHHHhhhc--
Q psy7618 86 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ------MERGIMQNAFRQIFDFKQKEK-- 157 (560)
Q Consensus 86 D~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~------~~~Giipr~l~~lF~~~~~~~-- 157 (560)
|+||+++++|++||+.+++|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..++...
T Consensus 106 D~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~ 185 (387)
T 2heh_A 106 DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYR 185 (387)
T ss_dssp SEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHH
T ss_pred eEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhccccc
Confidence 999999999999999999999999999999999999999999999999963 478999999999999876432
Q ss_pred cCcEEEEeehhhhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhc
Q psy7618 158 RHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 237 (560)
Q Consensus 158 ~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~ 237 (560)
...| .|.+||+|||||+|+|||+
T Consensus 186 ~~~~---------------------------------------------------------~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 186 KLGL---------------------------------------------------------EVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp TTTC---------------------------------------------------------EEEEEEEEEETTEEEETTT
T ss_pred CceE---------------------------------------------------------EEEEEEEEecCCeEEECCC
Confidence 2233 3558999999999999996
Q ss_pred CCCCCcccccccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccC
Q psy7618 238 VSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 317 (560)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~ 317 (560)
+.. . ++|.+ +
T Consensus 209 ~~~--------~---------------------------------------------l~i~e-----------------d 218 (387)
T 2heh_A 209 KKA--------K---------------------------------------------LRVLE-----------------D 218 (387)
T ss_dssp TTE--------E---------------------------------------------CEEEE-----------------C
T ss_pred CCc--------c---------------------------------------------ceEEE-----------------c
Confidence 431 0 33433 3
Q ss_pred CcccceecCCeEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcc
Q psy7618 318 AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397 (560)
Q Consensus 318 ~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr 397 (560)
.+++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.+... ....|+|+|||||||||
T Consensus 219 ~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~skL~lVDLAGSER 292 (387)
T 2heh_A 219 GKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK------GRMHGKFSLVDLAGNER 292 (387)
T ss_dssp TTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS------SSEEEEEEEEECCCCC-
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC------CeeeeEEEEEECCCCcc
Confidence 456899999999999999999999999999999999999999999999999999753 23579999999999999
Q ss_pred ccccc-CcchhhHHHhHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccc-cCCCceEEEEEeeCCCcccHHHHHHH
Q psy7618 398 LQKSN-ATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDS-FGGNAKTLMIANIGPAASTYKETLVT 475 (560)
Q Consensus 398 ~~~s~-~~g~r~~E~~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqds-LgGnskt~mI~~vsP~~~~~~ETl~T 475 (560)
..+++ +.+.+++|+.+||+||++||+||.+|..++.||||||||||+||||+ |||||+|+|||||||+..+++||++|
T Consensus 293 ~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsT 372 (387)
T 2heh_A 293 GADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNT 372 (387)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHH
T ss_pred ccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHH
Confidence 98876 46788899999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHhcccccc
Q psy7618 476 LEYANRAKKIKNA 488 (560)
Q Consensus 476 L~fa~rak~Ikn~ 488 (560)
|+||+|||+|++.
T Consensus 373 LrfA~rak~I~~~ 385 (387)
T 2heh_A 373 LRYADRVKELSPH 385 (387)
T ss_dssp HHHHHHHCC----
T ss_pred HHHHHHhccCcCC
Confidence 9999999999875
No 17
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-87 Score=698.26 Aligned_cols=348 Identities=32% Similarity=0.447 Sum_probs=246.0
Q ss_pred cccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEE------cCCCceeEeecCCCC----CCCCCCCCceeeeCC
Q psy7618 17 RTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKI------DTTKKCLSIQYSTDR----LKPRQPGKARRFTFD 86 (560)
Q Consensus 17 ~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~------~~~~~~v~i~~~~~~----~~~~~~~~~~~F~FD 86 (560)
-+.++|+...+.+++|+|+|||||+++.|...+...+... ..+...+.+..+... .........+.|.||
T Consensus 9 ~~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD 88 (376)
T 2rep_A 9 HHSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFD 88 (376)
T ss_dssp --------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECS
T ss_pred ccccccchhhccCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeec
Confidence 4567999999999999999999999999876543211111 123344554432111 001112345789999
Q ss_pred ccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCC----CcChHHHHHHHHHHHHhhhc--cCc
Q psy7618 87 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM----ERGIMQNAFRQIFDFKQKEK--RHK 160 (560)
Q Consensus 87 ~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~----~~Giipr~l~~lF~~~~~~~--~~~ 160 (560)
+||+++++|++||+. +.|+|+++|+|||+||||||||||||||||+|++. ++|||||++++||+.++... .+.
T Consensus 89 ~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~ 167 (376)
T 2rep_A 89 RVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWT 167 (376)
T ss_dssp EEECTTCCHHHHHHH-HHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEE
T ss_pred EEcCCcccchhhhhh-HHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeE
Confidence 999999999999998 56999999999999999999999999999999754 68999999999999887643 233
Q ss_pred EEEEeehhhhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCC
Q psy7618 161 CIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSR 240 (560)
Q Consensus 161 ~~v~~s~~e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~ 240 (560)
|. |.+||+|||||+|+|||++..
T Consensus 168 ~~---------------------------------------------------------v~vS~~EIYnE~i~DLL~~~~ 190 (376)
T 2rep_A 168 YS---------------------------------------------------------FVASYVEIYNETVRDLLATGT 190 (376)
T ss_dssp EE---------------------------------------------------------EEEEEEEEETTEEEETTCCC-
T ss_pred EE---------------------------------------------------------EEEEEEEEECCEeeEcccccc
Confidence 44 448899999999999997642
Q ss_pred CCcccccccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcc
Q psy7618 241 PTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKL 320 (560)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~ 320 (560)
... .... ++|++ +.+..+
T Consensus 191 ~~~--~~~~---------------------------------------------l~ir~---------------~~~~~~ 208 (376)
T 2rep_A 191 RKG--QGGE---------------------------------------------CEIRR---------------AGPGSE 208 (376)
T ss_dssp ------------------------------------------------------CCEEE---------------C---CC
T ss_pred ccc--cCCC---------------------------------------------ceEEe---------------ccCCCC
Confidence 100 0000 23333 222456
Q ss_pred cceecCCeEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCccccc
Q psy7618 321 TLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQK 400 (560)
Q Consensus 321 ~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~ 400 (560)
+++|.||+++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|...+...+ ....|+|+|||||||||.++
T Consensus 209 ~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~ 287 (376)
T 2rep_A 209 ELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRG-LQCGAPLSLVDLAGSERLDP 287 (376)
T ss_dssp CEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESSSC-CEEEEEEEEEECCCCC----
T ss_pred CEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCC-cEEEeEEEEEECCCCccccc
Confidence 89999999999999999999999999999999999999999999999999998766544 34579999999999999999
Q ss_pred ccCcc----hhhHHHhHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHH
Q psy7618 401 SNATD----IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTL 476 (560)
Q Consensus 401 s~~~g----~r~~E~~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL 476 (560)
+++.| .|++|+.+||+||++||+||.+|..++.|||||||||||||||+||||++|+|||||||+..+++||++||
T Consensus 288 t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTL 367 (376)
T 2rep_A 288 GLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSL 367 (376)
T ss_dssp --------------------CHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHH
T ss_pred ccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q psy7618 477 EYANRAKKI 485 (560)
Q Consensus 477 ~fa~rak~I 485 (560)
+||+|++++
T Consensus 368 rfA~Rv~~~ 376 (376)
T 2rep_A 368 RFASKVNQC 376 (376)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHhcC
Confidence 999999864
No 18
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=5.5e-87 Score=699.74 Aligned_cols=348 Identities=33% Similarity=0.487 Sum_probs=268.5
Q ss_pred HHHhhhhhhhccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeC
Q psy7618 6 MKKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTF 85 (560)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~F 85 (560)
++++|+....++. .++ ....+++|+|+|||||++..|...+...++.+.. ...+.+..+............+.|.|
T Consensus 50 i~~~r~~~~~~~~--~~~-~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~-~~~v~v~~~~~~~~~~~~~~~~~F~F 125 (410)
T 1v8k_A 50 IKEFRVTMECSPL--TVT-DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCF 125 (410)
T ss_dssp HHHHHHHHTCCTT--TTT-CTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCS-SSEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred HHHHHHhhccCCC--ccC-CcCCCCCeEEEEEeCCCChhHhhcCCccEEEECC-CCEEEEecCcccccccccccceEEee
Confidence 4677777766443 232 2334889999999999999998887777887754 34555554433222222223578999
Q ss_pred CccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCC------CCcChHHHHHHHHHHHHhhhc--
Q psy7618 86 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ------MERGIMQNAFRQIFDFKQKEK-- 157 (560)
Q Consensus 86 D~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~------~~~Giipr~l~~lF~~~~~~~-- 157 (560)
|+||+++++|++||+.+++|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||..++...
T Consensus 126 D~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~ 205 (410)
T 1v8k_A 126 DFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYR 205 (410)
T ss_dssp SEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHH
T ss_pred eEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999963 368999999999999876432
Q ss_pred cCcEEEEeehhhhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhc
Q psy7618 158 RHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 237 (560)
Q Consensus 158 ~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~ 237 (560)
...| .|.+||+|||||+|+|||+
T Consensus 206 ~~~~---------------------------------------------------------~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 206 NLNL---------------------------------------------------------EVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp TTCC---------------------------------------------------------EEEEEEEEEETTEEEETTT
T ss_pred CccE---------------------------------------------------------EEEEEEEEeeCCEEEECCC
Confidence 2233 3558999999999999996
Q ss_pred CCCCCcccccccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccC
Q psy7618 238 VSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 317 (560)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~ 317 (560)
+.. . ++|.+ +
T Consensus 229 ~~~--------~---------------------------------------------l~i~e-----------------d 238 (410)
T 1v8k_A 229 KKA--------K---------------------------------------------LRVLE-----------------D 238 (410)
T ss_dssp TTE--------E---------------------------------------------EEEEE-----------------C
T ss_pred CCC--------C---------------------------------------------ceEEE-----------------C
Confidence 431 0 44444 3
Q ss_pred CcccceecCCeEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcc
Q psy7618 318 AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397 (560)
Q Consensus 318 ~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr 397 (560)
..++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.+... ....|+|+|||||||||
T Consensus 239 ~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~skL~lVDLAGSER 312 (410)
T 1v8k_A 239 SRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK------GRLHGKFSLVDLAGNER 312 (410)
T ss_dssp SSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS------SSEEEEEEEEECCCCCC
T ss_pred CCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC------CcceeEEEEEECCCccc
Confidence 456899999999999999999999999999999999999999999999999999753 13579999999999999
Q ss_pred ccccc-CcchhhHHHhHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccc-cCCCceEEEEEeeCCCcccHHHHHHH
Q psy7618 398 LQKSN-ATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDS-FGGNAKTLMIANIGPAASTYKETLVT 475 (560)
Q Consensus 398 ~~~s~-~~g~r~~E~~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqds-LgGnskt~mI~~vsP~~~~~~ETl~T 475 (560)
..+++ +.+.+++|+.+||+||++||+||.+|..++.||||||||||+||||+ |||||+|+|||||||+..+++||++|
T Consensus 313 ~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsT 392 (410)
T 1v8k_A 313 GADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNT 392 (410)
T ss_dssp ------------TTHHHHHHHHHHHHHHHHHHTC------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHH
T ss_pred cccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHH
Confidence 98876 46788899999999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHhcccccccc
Q psy7618 476 LEYANRAKKIKNAPN 490 (560)
Q Consensus 476 L~fa~rak~Ikn~p~ 490 (560)
|+||+|||.|..+|.
T Consensus 393 LrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 393 LRYADRVKELSHHHH 407 (410)
T ss_dssp HHHHHHHHTTC----
T ss_pred HHHHHHhccCCCCCC
Confidence 999999999998875
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=5.3e-87 Score=692.91 Aligned_cols=330 Identities=34% Similarity=0.459 Sum_probs=274.1
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 110 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~ 110 (560)
+|||+|||||++..|...+...++.+.+ +..+.+..+............+.|.||+||+++++|++||+.+++|+|+++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~-~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 79 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDL 79 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEE-TTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECC-CCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhh
Confidence 5999999999999998877777887754 345555544322111111235689999999999999999999999999999
Q ss_pred hc-CCcEEEEEEcccCCCceEEeccCC-----CCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCC
Q psy7618 111 LH-GYNVTIFAYGQTGTGKTFTMEGSQ-----MERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSR 183 (560)
Q Consensus 111 l~-G~N~~i~aYG~TgSGKTyTm~G~~-----~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~ 183 (560)
++ |||+||||||||||||||||+|+. .++|||||++++||..++... ...|.
T Consensus 80 ~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~--------------------- 138 (360)
T 1ry6_A 80 YENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKG--------------------- 138 (360)
T ss_dssp HHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEE---------------------
T ss_pred ccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceE---------------------
Confidence 96 999999999999999999999974 589999999999999887643 33343
Q ss_pred CcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccc
Q psy7618 184 PTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263 (560)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (560)
|.+||+|||||+|+|||++...
T Consensus 139 ------------------------------------v~vS~~EIYnE~v~DLL~~~~~---------------------- 160 (360)
T 1ry6_A 139 ------------------------------------IFISFYEIYCGKLYDLLQKRKM---------------------- 160 (360)
T ss_dssp ------------------------------------EEEEEEEEETTEEEESCCC-------------------------
T ss_pred ------------------------------------EEEEEEEeeCCeeEEcccCCcc----------------------
Confidence 4488999999999999864421
Q ss_pred hhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHH
Q psy7618 264 SVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRK 343 (560)
Q Consensus 264 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~ 343 (560)
+.+ ..+...+++|+||+++.|.|++|++.+|.
T Consensus 161 -------------------------------~~~-----------------~e~~~~~~~v~gl~~~~V~s~~e~~~~l~ 192 (360)
T 1ry6_A 161 -------------------------------VAA-----------------LENGKKEVVVKDLKILRVLTKEELILKMI 192 (360)
T ss_dssp --------------------------------------------------------CCBCGGGSCCEEECSHHHHHHHHH
T ss_pred -------------------------------cee-----------------eEcCCCCEEEcCcEEEEeCCHHHHHHHHH
Confidence 111 12334589999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcc-hhhHHHhHhhhhHHHHH
Q psy7618 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATD-IRLKECCEINLSLLAVN 422 (560)
Q Consensus 344 ~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g-~r~~E~~~IN~SL~aL~ 422 (560)
.|.++|++++|.||+.|||||+||+|++.... .....|+|+|||||||||..++++.| .+++|+.+||+||++||
T Consensus 193 ~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~~~~~skL~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg 268 (360)
T 1ry6_A 193 DGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALK 268 (360)
T ss_dssp HHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----TTEEEEEEEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccccccCCCccceEEEEEEEEecc----CCcceeEEEEEECCCCccccccccccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998643 23457999999999999999998876 57899999999999999
Q ss_pred HHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccc
Q psy7618 423 KVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492 (560)
Q Consensus 423 ~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n 492 (560)
+||.+|..++.|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+|.|..|
T Consensus 269 ~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~~ 338 (360)
T 1ry6_A 269 ECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEG 338 (360)
T ss_dssp HHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999966555
No 20
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.3e-87 Score=692.64 Aligned_cols=332 Identities=33% Similarity=0.466 Sum_probs=256.9
Q ss_pred CCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC--CCCCCCceeeeCCccccCCCcchhhhhccch
Q psy7618 27 HQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK--PRQPGKARRFTFDAVYGMQATQTEIYENSVR 104 (560)
Q Consensus 27 ~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~--~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~ 104 (560)
..+++|+|||||||++..|.. .+.+..+...+.+..+..... .......+.|.||+||+ +++|++||+.+++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~ 94 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAK 94 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTH
T ss_pred CCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHH
Confidence 357899999999999766642 355555666666655543211 12234567899999997 6899999999999
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcccc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNV 181 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~ 181 (560)
|+|+++|+|||+||||||||||||||||+|+.. ++|||||++++||+.++......|.|.
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~----------------- 157 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVR----------------- 157 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEE-----------------
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEE-----------------
Confidence 999999999999999999999999999999754 589999999999998887666666655
Q ss_pred CCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccc
Q psy7618 182 SRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 261 (560)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (560)
+||+|||||+|+|||++........ .
T Consensus 158 ----------------------------------------vS~~EIYnE~i~DLL~~~~~~~~~~-~------------- 183 (359)
T 3nwn_A 158 ----------------------------------------VSYLEIYNESLFDLLSTLPYVGPSV-T------------- 183 (359)
T ss_dssp ----------------------------------------EEEEEEETTEEEETTSSSTTSCTTT-S-------------
T ss_pred ----------------------------------------EEEEEEecccccccccccccccccc-c-------------
Confidence 8888888888999887543210000 0
Q ss_pred cchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHH
Q psy7618 262 CQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENC 341 (560)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~l 341 (560)
.+.+.+ ...+++|+||+++.|.+++|++.+
T Consensus 184 --------------------------------~~~~~~------------------~~~g~~v~~l~~~~v~s~~e~~~l 213 (359)
T 3nwn_A 184 --------------------------------PMTIVE------------------NPQGVFIKGLSVHLTSQEEDAFSL 213 (359)
T ss_dssp --------------------------------CCEEEE------------------ETTEEEEETCCCEECSSHHHHHHH
T ss_pred --------------------------------cceEEe------------------cCCceEEeccEEEEecCHHHHHHH
Confidence 012222 123789999999999999999999
Q ss_pred HHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC-CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHH
Q psy7618 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK-TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLA 420 (560)
Q Consensus 342 l~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~-~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~a 420 (560)
|..|.++|++++|.+|..|||||+||+|+|...... .+.....|+|+|||||||||..++++.|.|++|+.+||+||++
T Consensus 214 l~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~ 293 (359)
T 3nwn_A 214 LFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSF 293 (359)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC----------------CCSTHHHH
T ss_pred HHhhhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHH
Confidence 999999999999999999999999999999876432 2334567999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 421 VNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 421 L~~vI~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
||+||.+|..++ .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 294 Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 294 LEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp HHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999998754 79999999999999999999999999999999999999999999999999987
No 21
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=1.6e-86 Score=689.28 Aligned_cols=329 Identities=39% Similarity=0.583 Sum_probs=256.1
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCC-CCCCCCCceeeeCCccc--------cCCCcchhhhh
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRL-KPRQPGKARRFTFDAVY--------GMQATQTEIYE 100 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~-~~~~~~~~~~F~FD~VF--------~~~a~Q~~vf~ 100 (560)
.+|+|+|||||++..|...+..+++.++.. .+.+..+.... ........+.|.||+|| ++.++|++||+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~--~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~ 78 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDAN--KVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFK 78 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETT--EEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCC--eEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHH
Confidence 379999999999999988888888887753 34443332211 11223457899999999 45689999999
Q ss_pred ccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhhhhhhhc
Q psy7618 101 NSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQGKIRDL 178 (560)
Q Consensus 101 ~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~~~~~dl 178 (560)
.++.|+|+++|+|||+||||||||||||||||+|+..++|||||++++||+.++... ...|.
T Consensus 79 ~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~---------------- 142 (354)
T 3gbj_A 79 CLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFK---------------- 142 (354)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEE----------------
T ss_pred HhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhccccccee----------------
Confidence 999999999999999999999999999999999999999999999999999886543 22333
Q ss_pred cccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCc
Q psy7618 179 LNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLR 258 (560)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
|.+||+|||||+|+|||++.... ..
T Consensus 143 -----------------------------------------v~vS~~EIYnE~i~DLL~~~~~~-----~~--------- 167 (354)
T 3gbj_A 143 -----------------------------------------VEVSYMEIYNEKVRDLLDPKGSR-----QT--------- 167 (354)
T ss_dssp -----------------------------------------EEEEEEEEETTEEEETTC-----------C---------
T ss_pred -----------------------------------------eeceeEEEecCeeeEccCCCCCC-----cc---------
Confidence 44899999999999999754210 00
Q ss_pred ccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHH
Q psy7618 259 SVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 338 (560)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~ 338 (560)
++| .+++..+++|+||+++.|.|++|+
T Consensus 168 ------------------------------------l~i-----------------~e~~~~g~~v~gl~~~~v~s~~e~ 194 (354)
T 3gbj_A 168 ------------------------------------LKV-----------------REHSVLGPYVDGLSKLAVTSYKDI 194 (354)
T ss_dssp ------------------------------------BCB-----------------C------CCBTTCCCEEECSHHHH
T ss_pred ------------------------------------eEE-----------------EEcCCCCEEEEeeEEEecCCHHHH
Confidence 222 234456899999999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeC---CCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhh
Q psy7618 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNS---KTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEIN 415 (560)
Q Consensus 339 ~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~---~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN 415 (560)
+.+|..|.++|++++|.||+.|||||+||+|++.+... ........|+|+|||||||||..++++.|.|++|+.+||
T Consensus 195 ~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN 274 (354)
T 3gbj_A 195 ESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNIN 274 (354)
T ss_dssp HHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHH
T ss_pred HHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhh
Confidence 99999999999999999999999999999999987632 122345679999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhC------CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcc
Q psy7618 416 LSLLAVNKVISSTVA------GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKK 484 (560)
Q Consensus 416 ~SL~aL~~vI~al~~------~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~ 484 (560)
+||++||+||.+|+. +..||||||||||+||||+|||||+|+|||||||+..+++||++||+||.||+.
T Consensus 275 ~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 275 KSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999985 347999999999999999999999999999999999999999999999999986
No 22
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=3.7e-86 Score=685.83 Aligned_cols=338 Identities=35% Similarity=0.480 Sum_probs=255.1
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEc-C--CCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccch
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKID-T--TKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVR 104 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~-~--~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~ 104 (560)
.+++|||+|||||+...|...+...++... . ....+.+.... .....+.|.||+||+++++|++||+. +.
T Consensus 3 lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~ 75 (349)
T 3t0q_A 3 LRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNE------GRILSYNFQFDMIFEPSHTNKEIFEE-IR 75 (349)
T ss_dssp --CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--------CEEEEEEESEEECTTCCHHHHHHH-HH
T ss_pred CCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCC------CcccceeeecCEEECCCccHHHHHHH-HH
Confidence 468999999999999888765444333221 1 12234443221 12346789999999999999999998 67
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhhhhhhhccccC
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQGKIRDLLNVS 182 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~~~~~dll~~~ 182 (560)
|+|+++++|||+||||||||||||||||+|+ ++|||||++++||+.++... .+.|.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~-------------------- 133 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYE-------------------- 133 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEE--------------------
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeE--------------------
Confidence 9999999999999999999999999999996 56999999999999887644 23444
Q ss_pred CCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccccc
Q psy7618 183 RPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 262 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
|.+||+|||||+|+|||.+........ .
T Consensus 134 -------------------------------------v~vS~~EIYnE~i~DLL~~~~~~~~~~--~------------- 161 (349)
T 3t0q_A 134 -------------------------------------MECEYIEIYNETILDLLRDFKSHDNID--E------------- 161 (349)
T ss_dssp -------------------------------------EEEEEEEEETTEEEETTC-------------------------
T ss_pred -------------------------------------EEEEEEEEEcchhhccccccccccccc--c-------------
Confidence 448888999999999987543210000 0
Q ss_pred chhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHH
Q psy7618 263 QSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCR 342 (560)
Q Consensus 263 ~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll 342 (560)
.. .. .-++|.. .+...+++|.||+++.|.|++|++.+|
T Consensus 162 -----~~------------~~---------~~~~i~~----------------~~~~~g~~v~~l~~~~v~s~~e~~~ll 199 (349)
T 3t0q_A 162 -----IL------------DS---------QKHDIRH----------------DHEKQGTYITNVTRMKMTSTSQVDTIL 199 (349)
T ss_dssp -------------------------------CCCEEE----------------ETTTTEEEETTCCCEECCCHHHHHHHH
T ss_pred -----cc------------cc---------ccceeEE----------------ecCCCCEEEeCCEEEEeCCHHHHHHHH
Confidence 00 00 0022222 223458999999999999999999999
Q ss_pred HHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHH
Q psy7618 343 KKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVN 422 (560)
Q Consensus 343 ~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~ 422 (560)
..|.++|++++|.+|+.|||||+||+|+++..+...+. ...|+|+|||||||||..+++++|.|++|+.+||+||++||
T Consensus 200 ~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~-~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg 278 (349)
T 3t0q_A 200 KKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGE-TSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLG 278 (349)
T ss_dssp HHC------------CTGGGSEEEEEEEEEEEETTTCC-EEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccccccccccCCcceEEEEEEEEEecCCCC-eeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHH
Confidence 99999999999999999999999999999988766554 45799999999999999999999999999999999999999
Q ss_pred HHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccc
Q psy7618 423 KVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489 (560)
Q Consensus 423 ~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p 489 (560)
+||.+|..++ .|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|+++|+..+
T Consensus 279 ~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 279 DVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 9999998765 499999999999999999999999999999999999999999999999999998765
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=5.6e-86 Score=684.75 Aligned_cols=341 Identities=33% Similarity=0.465 Sum_probs=259.0
Q ss_pred ccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC--CCCCCCceeeeCCccccCCCcc
Q psy7618 18 TKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK--PRQPGKARRFTFDAVYGMQATQ 95 (560)
Q Consensus 18 ~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~--~~~~~~~~~F~FD~VF~~~a~Q 95 (560)
...+-|...+.+++|||||||||+...+ ..++.++++...+.+..+..... .......+.|.||+||+ +++|
T Consensus 11 ~~~~~~~~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ 84 (358)
T 2nr8_A 11 SSGLVPRGSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQ 84 (358)
T ss_dssp ------------CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCH
T ss_pred cCCcccCCCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCH
Confidence 3456677788999999999999986543 34567777777777765543211 11233467899999995 8999
Q ss_pred hhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCC---cChHHHHHHHHHHHHhhhccCcEEEEeehhhhhh
Q psy7618 96 TEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME---RGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQ 172 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~---~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~ 172 (560)
++||+.+++|+|+++++|||+||||||||||||||||+|+..+ +|||||++++||+.++......|.|.
T Consensus 85 ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~-------- 156 (358)
T 2nr8_A 85 DLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVR-------- 156 (358)
T ss_dssp HHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEE--------
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEE--------
Confidence 9999999999999999999999999999999999999998764 89999999999999887665555555
Q ss_pred hhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccC
Q psy7618 173 GKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL 252 (560)
Q Consensus 173 ~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~ 252 (560)
+||+|||||+|+|||++...... ...
T Consensus 157 -------------------------------------------------vS~~EIYnE~i~DLL~~~~~~~~-~~~---- 182 (358)
T 2nr8_A 157 -------------------------------------------------VSYLEIYNESLFDLLSTLPYVGP-SVT---- 182 (358)
T ss_dssp -------------------------------------------------EEEEEEETTEEEETTSSSTTSCT-TTS----
T ss_pred -------------------------------------------------EEEEEEeCCeeeECcCCccccCc-cCC----
Confidence 88899999999999876431100 000
Q ss_pred CCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEc
Q psy7618 253 PCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 332 (560)
Q Consensus 253 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v 332 (560)
.++|.+ +. .+++|+||+++.|
T Consensus 183 -----------------------------------------~l~i~e-----------------~~-~g~~v~gl~~~~v 203 (358)
T 2nr8_A 183 -----------------------------------------PMTIVE-----------------NP-QGVFIKGLSVHLT 203 (358)
T ss_dssp -----------------------------------------CCEEEE-----------------ET-TEEEEETCCCEEC
T ss_pred -----------------------------------------ceEEEE-----------------CC-CceEecCCEEEEc
Confidence 034443 11 3789999999999
Q ss_pred CCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC-CCceeEeeeeeeeeccCCcccccccCcchhhHHH
Q psy7618 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK-TGKALIHSKLNLVDLAGSECLQKSNATDIRLKEC 411 (560)
Q Consensus 333 ~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~-~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~ 411 (560)
.+++|++.+|..|.++|++++|.+|+.|||||+||+|+|+..... .+.....|+|+|||||||||.+++++.|.|++|+
T Consensus 204 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~ 283 (358)
T 2nr8_A 204 SQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEA 283 (358)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC---------------
T ss_pred CCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHH
Confidence 999999999999999999999999999999999999999876432 2234457999999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 412 CEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 412 ~~IN~SL~aL~~vI~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
.+||+||++||+||.+|..++ .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 284 ~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 284 TYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp -CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999998765 69999999999999999999999999999999999999999999999999986
No 24
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.2e-85 Score=680.93 Aligned_cols=334 Identities=37% Similarity=0.504 Sum_probs=261.3
Q ss_pred CCCeEEEEEeCCCCc-chhccCCccEEEEcCC-----CceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhcc
Q psy7618 29 DENIKVVVRCRPMNV-PERKAHVENVIKIDTT-----KKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENS 102 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~-~e~~~~~~~~v~~~~~-----~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~ 102 (560)
+++|+|+|||||+.. .|. ....++.+... ...+.+..+. .....+.|.||+||+++++|++||+.
T Consensus 2 k~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~~------~~~~~~~f~FD~Vf~~~~~Q~~Vy~~- 72 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKIQ------NTAQVHEFKFDKIFDQQDTNVDVFKE- 72 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEGG------GTTCEEEEEESEEECTTCCHHHHHHH-
T ss_pred CCCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecCC------CCcCceEEeeCEEECCCCCHHHHHHH-
Confidence 589999999999987 332 23344444321 1234443321 22456899999999999999999998
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhhhhhhhccc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQGKIRDLLN 180 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~~~~~dll~ 180 (560)
+.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++... .+.|.|
T Consensus 73 v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v----------------- 133 (347)
T 1f9v_A 73 VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKV----------------- 133 (347)
T ss_dssp HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEE-----------------
T ss_pred HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEE-----------------
Confidence 679999999999999999999999999999996 57999999999999887643 234444
Q ss_pred cCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccc
Q psy7618 181 VSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSV 260 (560)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~ 260 (560)
.+||+|||||+|+|||++...........
T Consensus 134 ----------------------------------------~vS~~EIYnE~i~DLL~~~~~~~~~~~~~----------- 162 (347)
T 1f9v_A 134 ----------------------------------------NCEFIEIYNENIVDLLRSDNNNKEDTSIG----------- 162 (347)
T ss_dssp ----------------------------------------EEEEEEEETTEEEETTC-----------------------
T ss_pred ----------------------------------------EEEEEEEECCeeeeccCCccccccccccC-----------
Confidence 48889999999999987653210000000
Q ss_pred ccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHH
Q psy7618 261 TCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIEN 340 (560)
Q Consensus 261 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ 340 (560)
.-++|.. .+..++++|.||+++.|.+++|++.
T Consensus 163 --------------------------------~~~~i~~----------------~~~~~~~~v~~l~~~~v~s~~e~~~ 194 (347)
T 1f9v_A 163 --------------------------------LKHEIRH----------------DQETKTTTITNVTSCKLESEEMVEI 194 (347)
T ss_dssp ---------------------------------CCCEEE----------------ETTTTEEEETTCCCEECSSGGGHHH
T ss_pred --------------------------------CceeEEE----------------ecCCCceEecCCEEEEcCCHHHHHH
Confidence 0022222 1234589999999999999999999
Q ss_pred HHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHH
Q psy7618 341 CRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLA 420 (560)
Q Consensus 341 ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~a 420 (560)
+|..|.++|++++|.||+.|||||+||+|++...+...+ ....|+|+|||||||||..++++.|.|++|+.+||+||++
T Consensus 195 ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~a 273 (347)
T 1f9v_A 195 ILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 273 (347)
T ss_dssp HHHHHC-----------CCGGGSEEEEEEEEEEECC--C-CEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCC-ceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHH
Confidence 999999999999999999999999999999998765544 3457999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccc
Q psy7618 421 VNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPN 490 (560)
Q Consensus 421 L~~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~ 490 (560)
||+||.+|..++ .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|+++|+..|.
T Consensus 274 Lg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp HHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred HHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 999999999876 8999999999999999999999999999999999999999999999999999998773
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.3e-85 Score=693.22 Aligned_cols=341 Identities=30% Similarity=0.453 Sum_probs=272.6
Q ss_pred hccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCc
Q psy7618 15 CRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQAT 94 (560)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~ 94 (560)
...++.+|+...+.+++|+|||||||+...|..... ..+... +...+.+...... .......+.|.||+||+++++
T Consensus 44 ~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~-~~~~~~-~~~~v~~~~~~~~--~~~~~~~~~F~FD~VF~~~~~ 119 (412)
T 3u06_A 44 NMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMC-CTWTYH-DESTVELQSIDAQ--AKSKMGQQIFSFDQVFHPLSS 119 (412)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCB-CEEEEE-ETTEEEEECCC---------CCCEEECSEEECTTCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcc-eEEEec-CCCEEEEecCCcc--cccccCceEEeeCeEcCCCCC
Confidence 345666899889999999999999999988865432 223322 3344555433221 111223578999999999999
Q ss_pred chhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhh
Q psy7618 95 QTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQ 172 (560)
Q Consensus 95 Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~ 172 (560)
|++||+. +.|+|+++|+|||+||||||||||||||||+|++.++|||||++++||+.+.... .+.|.
T Consensus 120 Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~---------- 188 (412)
T 3u06_A 120 QSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYE---------- 188 (412)
T ss_dssp HHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEE----------
T ss_pred HHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEE----------
Confidence 9999986 6799999999999999999999999999999999999999999999999887643 23444
Q ss_pred hhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccC
Q psy7618 173 GKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL 252 (560)
Q Consensus 173 ~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~ 252 (560)
|.+||+|||||.|+|||++....
T Consensus 189 -----------------------------------------------v~vS~~EIYnE~i~DLL~~~~~~---------- 211 (412)
T 3u06_A 189 -----------------------------------------------IKATFLEIYNEVLYDLLSNEQKD---------- 211 (412)
T ss_dssp -----------------------------------------------EEEEEEEEETTEEEETTCCSCCC----------
T ss_pred -----------------------------------------------EEEEEEEEeCCeeEEcCCCCCCC----------
Confidence 44889999999999999654210
Q ss_pred CCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEc
Q psy7618 253 PCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 332 (560)
Q Consensus 253 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v 332 (560)
++|+. ..+..++++|.||+++.|
T Consensus 212 ------------------------------------------~~i~~---------------~~~~~~~~~v~gl~~~~v 234 (412)
T 3u06_A 212 ------------------------------------------MEIRM---------------AKNNKNDIYVSNITEETV 234 (412)
T ss_dssp ------------------------------------------CCEEE---------------CSSCTTSEEETTCCCEEC
T ss_pred ------------------------------------------ceeee---------------eecCCCCEEEcceEEEEe
Confidence 12221 234556899999999999
Q ss_pred CCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHh
Q psy7618 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECC 412 (560)
Q Consensus 333 ~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~ 412 (560)
.+++|++.+|..|.++|++++|.+|+.|||||+||+|++...+...+ ....|+|+|||||||||.. .+.|++|+.
T Consensus 235 ~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~-~~~~~kL~lVDLAGSEr~~----~~~rl~E~~ 309 (412)
T 3u06_A 235 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQ-EISVGSINLVDLAGSESPK----TSTRMTETK 309 (412)
T ss_dssp CSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTT-EEEEEEEEEEECCCCCC--------------C
T ss_pred CCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCC-CEEEEEEEEEECCCCCcCC----ccchhHhHH
Confidence 99999999999999999999999999999999999999998776554 4567999999999999875 468999999
Q ss_pred HhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccc
Q psy7618 413 EINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489 (560)
Q Consensus 413 ~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p 489 (560)
+||+||++||+||.+|..++.||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|+++|+..+
T Consensus 310 ~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~ 386 (412)
T 3u06_A 310 NINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTK 386 (412)
T ss_dssp TTTHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC--
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998554
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-85 Score=692.26 Aligned_cols=348 Identities=36% Similarity=0.498 Sum_probs=274.5
Q ss_pred ccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcC---CC--ceeEeecCCCCCCCCCCCCceeeeCCcccc
Q psy7618 16 RRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDT---TK--KCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90 (560)
Q Consensus 16 ~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~---~~--~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~ 90 (560)
..++.+|+...+.+|+|+|||||||+...+.... ...+.+.. .. ..+.+... ......+.|.||+||+
T Consensus 45 ~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~-~~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~F~FD~VF~ 117 (403)
T 4etp_A 45 TVRRTLHNELQELRGNIRVYLRIRPALKNLENSD-TSLINVNEFDDNSGVQSMEVTKI------QNTAQVHEFKFDKIFD 117 (403)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSC-CTTEEECCCBTTTTBEEEEEEEC------SSSCEEEEEEESEEEC
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccC-CCeeEEeeccCCCCceEEEEecC------CCCcCceEEEcCEEEC
Confidence 3456688988899999999999999987632221 22333331 11 12222221 1223467899999999
Q ss_pred CCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehh
Q psy7618 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYL 168 (560)
Q Consensus 91 ~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~ 168 (560)
++++|++||+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++... .+.|.
T Consensus 118 ~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~------ 188 (403)
T 4etp_A 118 QQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYK------ 188 (403)
T ss_dssp TTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEE------
T ss_pred CCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEE------
Confidence 99999999998 679999999999999999999999999999996 56999999999999887643 23444
Q ss_pred hhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccc
Q psy7618 169 ELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKA 248 (560)
Q Consensus 169 e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~ 248 (560)
|.+||+|||||+|+|||.+..........
T Consensus 189 ---------------------------------------------------v~vS~~EIYnE~i~DLL~~~~~~~~~~~~ 217 (403)
T 4etp_A 189 ---------------------------------------------------VNAEFIEIYNENIVDLLRSDNNNKEDTSI 217 (403)
T ss_dssp ---------------------------------------------------EEEEEEEEETTEEEETTCC--------CC
T ss_pred ---------------------------------------------------EEEEEEEEecceeeEccCCcccccccccc
Confidence 44888999999999999765321000000
Q ss_pred cccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCe
Q psy7618 249 KLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLR 328 (560)
Q Consensus 249 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~ 328 (560)
. . -++|.. .+..++++|.||+
T Consensus 218 ~----------------------------------~---------~~~i~~----------------~~~~~~~~v~~l~ 238 (403)
T 4etp_A 218 G----------------------------------L---------KHEIRH----------------DQETKTTTITNVT 238 (403)
T ss_dssp S----------------------------------C---------CCCEEE----------------ETTTTEEEETTCC
T ss_pred C----------------------------------c---------ceeeEE----------------eCCCCCEEecCcE
Confidence 0 0 022222 2234578999999
Q ss_pred EEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhh
Q psy7618 329 SVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408 (560)
Q Consensus 329 ~~~v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~ 408 (560)
++.|.|++|++.+|..|.++|++++|.+|+.|||||+||+|++...+...+. ...|+|+|||||||||..++++.|.|+
T Consensus 239 ~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~-~~~~kL~lVDLAGSEr~~~t~~~g~rl 317 (403)
T 4etp_A 239 SVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA-HSYGTLNLVDLAGSERINVSQVVGDRL 317 (403)
T ss_dssp CEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCC-EEEEEEEEEECCCCCCCCCSSCCHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCC-eeEEEEEEEECCCCccccccCChhHHH
Confidence 9999999999999999999999999999999999999999999988766554 457999999999999999999999999
Q ss_pred HHHhHhhhhHHHHHHHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 409 KECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 409 ~E~~~IN~SL~aL~~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
+|+.+||+||++||+||.+|+.++ .||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|+++|
T Consensus 318 ~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~ 397 (403)
T 4etp_A 318 RETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNST 397 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998765 49999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q psy7618 486 KNAPN 490 (560)
Q Consensus 486 kn~p~ 490 (560)
+..|.
T Consensus 398 ~~~~r 402 (403)
T 4etp_A 398 RLVSR 402 (403)
T ss_dssp -----
T ss_pred ccCCC
Confidence 98774
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.3e-84 Score=668.10 Aligned_cols=314 Identities=31% Similarity=0.501 Sum_probs=241.5
Q ss_pred CCCCCeEEEEEeCCCCcchhccCCccEEEEcC--CCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccch
Q psy7618 27 HQDENIKVVVRCRPMNVPERKAHVENVIKIDT--TKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVR 104 (560)
Q Consensus 27 ~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~--~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~ 104 (560)
...++|||+|||||+.+.|. .+...++.+.+ ....+.+ ..+.|.||+||+++++|++||+.++.
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~-------------~~~~F~FD~Vf~~~~sQ~~Vy~~~~~ 84 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIV-------------DQNEFHFDHAFPATISQDEMYQALIL 84 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEE-------------TTEEEECSEEECTTCCHHHHHHHHTH
T ss_pred CCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEe-------------cCcEEEcceEECCCCCHHHHHHhhcc
Confidence 45788999999999987763 23444555443 1222222 24689999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccCC------CCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ------MERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDL 178 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~------~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dl 178 (560)
|+|+++|+|||+||||||||||||||||+|+. .++|||||++++||+.+.......
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~------------------ 146 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENN------------------ 146 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSC------------------
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhcc------------------
Confidence 99999999999999999999999999999874 468999999999999887643110
Q ss_pred cccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCc
Q psy7618 179 LNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLR 258 (560)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
...+.|.+||+|||||+|+|||++....
T Consensus 147 ------------------------------------~~~~~v~vS~~EIYnE~i~DLL~~~~~~---------------- 174 (344)
T 3dc4_A 147 ------------------------------------KDAIQVYASFIEIYNEKPFDLLGSTPHM---------------- 174 (344)
T ss_dssp ------------------------------------SSCCEEEEEEEEEESSCEEETTSSCTTS----------------
T ss_pred ------------------------------------ccceEEEEEEEEEeCCeeEEccCCCCCC----------------
Confidence 0123355899999999999999755310
Q ss_pred ccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHH
Q psy7618 259 SVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 338 (560)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~ 338 (560)
+ .....+.|++++.|.|++|+
T Consensus 175 ----------------------------------------------------~-------~~~~~~~~~~~~~v~s~~e~ 195 (344)
T 3dc4_A 175 ----------------------------------------------------P-------MVAARCQRCTCLPLHSQADL 195 (344)
T ss_dssp ----------------------------------------------------B-------CCSSTTTCSCCEECSSHHHH
T ss_pred ----------------------------------------------------c-------cccccccCceecccCCHHHH
Confidence 0 00222458899999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhH
Q psy7618 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSL 418 (560)
Q Consensus 339 ~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL 418 (560)
+.+|..|.++|++++|.||+.|||||+||+|+++.. ...|+|+|||||||||..++++.|.+++|+.+||+||
T Consensus 196 ~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~-------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL 268 (344)
T 3dc4_A 196 HHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK-------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268 (344)
T ss_dssp HHHHHHHHHTCC----------CCEEEEEEEEEECS-------SCEEEEEEEECCCCCCC-------------CCSCCHH
T ss_pred HHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhH
Confidence 999999999999999999999999999999999642 2479999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccc
Q psy7618 419 LAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPN 490 (560)
Q Consensus 419 ~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~ 490 (560)
++||+||.+|+.++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.....|.
T Consensus 269 ~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 269 LSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887664
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.6e-77 Score=680.39 Aligned_cols=328 Identities=34% Similarity=0.485 Sum_probs=245.5
Q ss_pred CCCeEEEEEeC----CCCcchhccCCccEEEEcC-------CCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchh
Q psy7618 29 DENIKVVVRCR----PMNVPERKAHVENVIKIDT-------TKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTE 97 (560)
Q Consensus 29 ~~~ikV~vRvR----P~~~~e~~~~~~~~v~~~~-------~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~ 97 (560)
-++++|||||| |....|...+.. .+.+.. ....+++..+. ......++|+||+||+++++|++
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~f~fd~vf~~~~~q~~ 446 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSED-IIQYEAPQDINDESKQELVITRNI-----NNNFSNLRFLFDKIFEREQSNDL 446 (715)
T ss_dssp SCSEEEEEEECCCC--------------BCEEECCC-------CEEEEEEEE-----TTEEEEEEEECSEEECSSCCHHH
T ss_pred HhcCeEEEEEecccccccccccccccc-ceeccCCCCCCCCCCCeEEEcCCC-----CCCCCCeEEEeceEeCCCCCHHH
Confidence 46799999999 444444333222 222211 22334443322 23456789999999999999999
Q ss_pred hhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhh
Q psy7618 98 IYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRD 177 (560)
Q Consensus 98 vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~d 177 (560)
||+. +.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++......
T Consensus 447 v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~----------------- 506 (715)
T 4h1g_A 447 VFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKG----------------- 506 (715)
T ss_dssp HGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGT-----------------
T ss_pred HHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCC-----------------
Confidence 9987 569999999999999999999999999999995 68999999999999887643221
Q ss_pred ccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCC
Q psy7618 178 LLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 257 (560)
Q Consensus 178 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~ 257 (560)
..+.|.+||+|||||+|+|||++..... ..
T Consensus 507 --------------------------------------~~~~v~~s~~Eiyne~i~DLl~~~~~~~----~~-------- 536 (715)
T 4h1g_A 507 --------------------------------------WSYTVRGKFIEIYNEAIVDLLNPKIDPN----TK-------- 536 (715)
T ss_dssp --------------------------------------EEEEEEEEEEEEETTEEEESSSCCCCTT----CC--------
T ss_pred --------------------------------------ceEEEEEEEEEEECCEEEECCCCCCCCC----Cc--------
Confidence 1123458999999999999997653110 00
Q ss_pred cccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHH
Q psy7618 258 RSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 337 (560)
Q Consensus 258 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee 337 (560)
+++. ..+..++++|+||+++.|.|.+|
T Consensus 537 -------------------------------------~~~~----------------~~~~~g~~~v~~l~~~~v~~~~~ 563 (715)
T 4h1g_A 537 -------------------------------------YEIK----------------HDDIAGKTTVTNVSTIDIKSPEQ 563 (715)
T ss_dssp -------------------------------------CCEE----------------EETTTTEEEETTCCCEECSCHHH
T ss_pred -------------------------------------ceeE----------------EecCCCCEEEeCCEEEEcCCHHH
Confidence 1111 12234578999999999999999
Q ss_pred HHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhh
Q psy7618 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLS 417 (560)
Q Consensus 338 ~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~S 417 (560)
++.+|..|.++|++++|.+|+.|||||+||+|+|++.+...+ ....|+|+|||||||||..++++.|.|++|+.+||+|
T Consensus 564 ~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~~~~-~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~s 642 (715)
T 4h1g_A 564 AITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTK-ESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKS 642 (715)
T ss_dssp HHHHHHHHHCC----------CGGGSEEEEEEEEEEEETTTC-CEEEEEEEEEECCCCCC---------CHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccccccCccccccEEEEEEEEEEecCCC-CEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876555 3457999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCC-CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccc
Q psy7618 418 LLAVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIK 486 (560)
Q Consensus 418 L~aL~~vI~al~~~-~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ik 486 (560)
|++||+||.+|+.+ ..|||||||||||||||+|||||+|+|||||||+..+++||++||+||+|||+|+
T Consensus 643 L~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 643 LSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp HHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 99999999999754 5899999999999999999999999999999999999999999999999999997
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.97 E-value=4e-32 Score=228.05 Aligned_cols=87 Identities=41% Similarity=0.559 Sum_probs=82.5
Q ss_pred HhHhhhhHHHHHHHHHhhhCC-CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccc
Q psy7618 411 CCEINLSLLAVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489 (560)
Q Consensus 411 ~~~IN~SL~aL~~vI~al~~~-~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p 489 (560)
+++||+||++||+||.+|..+ +.||||||||||+||||+||||++|+||+||||+..+++||++||+||+||++|+|.|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 357999999999999999987 5899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccch
Q psy7618 490 NINFYRED 497 (560)
Q Consensus 490 ~~n~~~~~ 497 (560)
.+|+....
T Consensus 81 ~~n~~~~~ 88 (100)
T 2kin_B 81 SVNLELTA 88 (100)
T ss_dssp CCEEECCH
T ss_pred eeccCCCH
Confidence 99987554
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=6.4e-30 Score=222.25 Aligned_cols=83 Identities=42% Similarity=0.589 Sum_probs=79.5
Q ss_pred hhhHHHHHHHHHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccccc
Q psy7618 415 NLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINF 493 (560)
Q Consensus 415 N~SL~aL~~vI~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~ 493 (560)
|+||++||+||.+|+.++ .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+||+.|+|.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 799999999999999875 7999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccch
Q psy7618 494 YRED 497 (560)
Q Consensus 494 ~~~~ 497 (560)
....
T Consensus 81 ~~~~ 84 (117)
T 3kin_B 81 ELTA 84 (117)
T ss_dssp CCCH
T ss_pred cCCH
Confidence 7654
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.3e-27 Score=227.56 Aligned_cols=280 Identities=12% Similarity=0.121 Sum_probs=180.2
Q ss_pred hhhccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCC
Q psy7618 13 NECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ 92 (560)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~ 92 (560)
.|-++|+.||+...+.+|+|||||||||...+. ...+... ..++.+ .. ..+.|.||+||++.
T Consensus 7 qE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p~-----~~~v~y~--~~~I~v-~~----------~~k~f~FDRVf~p~ 68 (298)
T 2o0a_A 7 KELLRSRRLENSIIEQKGTMRCYAYVMEQNLPE-----NLLFDYE--NGVITQ-GL----------SEHVYKFNRVIPHL 68 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEEECGGGSCT-----TEEEETT--TTEEEE-TT----------TCCEEECSEEEETT
T ss_pred HHHHHHHHHHhHHHHhhCceEEEEEeccccCCc-----cceeecC--ccceee-cC----------CCceEEeeeEECcc
Confidence 455666778888888999999999999954121 1112222 233443 11 12689999999999
Q ss_pred Ccch--hhhhccchHHHHHHhc-CCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhh-hccCcEEEEeehh
Q psy7618 93 ATQT--EIYENSVRPMVNHMLH-GYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQK-EKRHKCIVECCYL 168 (560)
Q Consensus 93 a~Q~--~vf~~~~~plv~~~l~-G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~-~~~~~~~v~~s~~ 168 (560)
+.|+ +||++ +.++|+++|+ |||+||||||||||||| ||++..+|..... .. +.|.+.
T Consensus 69 s~Qe~~~vf~E-~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~-~~Y~~t---- 129 (298)
T 2o0a_A 69 KVSEDKFFTQE-YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ-KQYVIT---- 129 (298)
T ss_dssp TSCHHHHHHHT-THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH-HHEEEE----
T ss_pred ccccHHHHHHH-HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc-cceEEE----
Confidence 9999 99999 8999999999 99999999999999999 9999999986644 22 555555
Q ss_pred hhhhhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeee-hhhhhhhhcCCCCCccccc
Q psy7618 169 ELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELY-QGKIRDLLNVSRPTLFDTK 247 (560)
Q Consensus 169 e~~~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy-~e~v~DLL~~~~~~~~~~~ 247 (560)
++|+||| ||.++|||......
T Consensus 130 -----------------------------------------------------lq~veLy~Ne~~~DLL~~~~~~----- 151 (298)
T 2o0a_A 130 -----------------------------------------------------LQFVFLSDDEFSQDMLLDYSHN----- 151 (298)
T ss_dssp -----------------------------------------------------EEEEEEECC-CEEETTSCCC-------
T ss_pred -----------------------------------------------------EEEEEEecCCchHHhcCCCCCC-----
Confidence 7888888 88888888633210
Q ss_pred ccccCCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCC
Q psy7618 248 AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 327 (560)
Q Consensus 248 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL 327 (560)
.+ ++|.. +.++...+.|+
T Consensus 152 ~k---------------------------------------------~eIk~-----------------~~~g~~iv~~s 169 (298)
T 2o0a_A 152 DK---------------------------------------------DSIKL-----------------KFEKHSISLDS 169 (298)
T ss_dssp -------------------------------------------------CEE-----------------EECSSCEEEES
T ss_pred Cc---------------------------------------------ceEEe-----------------cCCCCEEeccc
Confidence 00 22221 23447788899
Q ss_pred eEEEcCC-HHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC--CCceeEeeeeeeeeccCCcccccccCc
Q psy7618 328 RSVTCQS-VEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK--TGKALIHSKLNLVDLAGSECLQKSNAT 404 (560)
Q Consensus 328 ~~~~v~s-~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~--~~~~~~~s~L~~VDLAGSEr~~~s~~~ 404 (560)
+.+.|.+ .+|+..++..+.. +.+|+ +.-.|+.+.+...+.. .......-.++|+.+.-.
T Consensus 170 ~~i~V~~~~edv~~~~~~~~~------~~~~~---~gi~i~k~~~~~~~~~~~~~~~~~~~d~yf~e~~~~--------- 231 (298)
T 2o0a_A 170 KLVIIENGLEDLPLNFSCDEH------PNLPH---SGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNL--------- 231 (298)
T ss_dssp CCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC-------CCCEEEEEEEECSH---------
T ss_pred EEEEccccHHHHHHHhhcccc------cccCC---CCceEEEEEEecCcccccccCCCCceEEEEEEeCCH---------
Confidence 9999999 8988887722211 11221 2344555544432111 111111334677765322
Q ss_pred chhhHHHhHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcc
Q psy7618 405 DIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKK 484 (560)
Q Consensus 405 g~r~~E~~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~ 484 (560)
++...|.+.+. .+ -+-.|+++-+||.-|- ..|.++++++.-..... ..|..+++..+
T Consensus 232 -----------~~~~~l~~~~~---~~----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~~----~lL~~s~~i~~ 288 (298)
T 2o0a_A 232 -----------KSIEQFDKSIF---KK----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNVN----KLLTISEEVQT 288 (298)
T ss_dssp -----------HHHHHHHHHHH---TC-----CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGHH----HHHHHHHHHHH
T ss_pred -----------HHHHHHHhhcc---cc----cccCCcHHHHHHHHHh-cCcceEEEEecCCCchh----HHHHHHHHhhc
Confidence 22334444332 22 3457889999988775 47899999998764332 37888888888
Q ss_pred cccccc
Q psy7618 485 IKNAPN 490 (560)
Q Consensus 485 Ikn~p~ 490 (560)
++|...
T Consensus 289 ~~~~~~ 294 (298)
T 2o0a_A 289 QLCKRK 294 (298)
T ss_dssp HTC---
T ss_pred ccCccc
Confidence 887544
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.61 E-value=0.005 Score=56.45 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=37.1
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.++||.....+..|+++++. +..+++++-......++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 36788876656678888866 5666665543344567889999999999864
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.35 E-value=0.019 Score=53.44 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCc-EEEEEEcccCCCceEEec
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYN-VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N-~~i~aYG~TgSGKTyTm~ 133 (560)
.++||.....+..+.++++. +..++...-.+.. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46788766555567777764 4445544333322 678899999999999764
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.76 E-value=0.035 Score=55.80 Aligned_cols=51 Identities=16% Similarity=0.374 Sum_probs=32.4
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++||.+...+..+..++.. +..+++..-.+....|+-||++|+||||.+.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 5666654333355556653 44555544333356788899999999998754
No 35
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.069 Score=52.91 Aligned_cols=92 Identities=16% Similarity=0.187 Sum_probs=66.7
Q ss_pred hhccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCC
Q psy7618 14 ECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQA 93 (560)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a 93 (560)
|..+|+.+.+...+.+|.||+|+=+-+-..++ -+.++-.+.+++ ..+..+.|.|++|++.+.
T Consensus 43 E~lrRRkLENSIdElKG~IRcFAYi~~~~~p~-------~~~idY~~~~It-----------~~~~~~~y~FnRiIp~~~ 104 (333)
T 4etp_B 43 ELLRSRRLENSIIEQKGTMRVYAYVMEQNLPE-------NLLFDYENGVIT-----------QGLSEHVYKFNRVIPHLK 104 (333)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEECCSSCCS-------SCEEETTTTEEE-----------C--CCCEEECSEEEETTT
T ss_pred HHHHHHHHhhhHHHhcCcEEEEEEECcccCCc-------cEEEecccceEe-----------ecCCcceEEEeeeechhh
Confidence 44455667788888899999999987633222 245565566654 123567899999998776
Q ss_pred --cchhhhhccchHHHHHHh-cCCcEEEEEEccc
Q psy7618 94 --TQTEIYENSVRPMVNHML-HGYNVTIFAYGQT 124 (560)
Q Consensus 94 --~Q~~vf~~~~~plv~~~l-~G~N~~i~aYG~T 124 (560)
.+.-+|++ ++..++-++ .+.|+.||..|..
T Consensus 105 ~~e~~~l~qE-~q~y~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 105 VSEDCFFTQE-YSVYHDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp CCHHHHHHHT-THHHHHHHHHTTCCEEEEEEESS
T ss_pred cchHHHHHHH-HHHHHHHHHccCCCeeEEEecCC
Confidence 45556655 899999999 9999999999864
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.45 E-value=0.21 Score=44.86 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=23.0
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++..+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3445555556666778999999999998763
No 37
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=86.11 E-value=0.2 Score=49.69 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=23.7
Q ss_pred hhhhhccchHHHHHHhc--CCc--EEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHMLH--GYN--VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l~--G~N--~~i~aYG~TgSGKTyTm 132 (560)
..+.+.++..++...+. |.. ..|+-||++|+|||+..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34445555555555543 222 36788999999999854
No 38
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.06 E-value=0.23 Score=44.54 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=22.9
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++..+..+....++-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3445555556667788999999999998653
No 39
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.62 E-value=0.21 Score=50.45 Aligned_cols=22 Identities=9% Similarity=0.077 Sum_probs=19.1
Q ss_pred hcCCcEEEEEEcccCCCceEEe
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.|...+++-||++|+|||.++
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHH
Confidence 3678889999999999999874
No 40
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.62 E-value=0.33 Score=45.56 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=27.3
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEec
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
++||.+... ..++++++. +..++ .+....++-||++|+|||+.+.
T Consensus 25 ~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 566765542 223444433 33333 3356778999999999998754
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.99 E-value=2.5 Score=44.36 Aligned_cols=75 Identities=28% Similarity=0.390 Sum_probs=51.5
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhc--C--CcEEEEEEcccCCCceEEe--------------ccC---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLH--G--YNVTIFAYGQTGTGKTFTM--------------EGS---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~--G--~N~~i~aYG~TgSGKTyTm--------------~G~---~~~~G 140 (560)
-+||.|-+-+..-+++-+.++.|+.. ..+. | .--.|+-||++|+|||.+. -|+ ....|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vG 257 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIG 257 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSS
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccc
Confidence 56888877666666677777777752 3333 3 2356889999999999654 222 12567
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy7618 141 IMQNAFRQIFDFKQKEK 157 (560)
Q Consensus 141 iipr~l~~lF~~~~~~~ 157 (560)
--.+.++.+|.......
T Consensus 258 ese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 258 EGAKLVRDAFALAKEKA 274 (434)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88899999998776654
No 42
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.28 E-value=0.29 Score=47.84 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=30.6
Q ss_pred eeeCCccccCCCcchhhhhccchHHHH-----HHhcCCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVN-----HMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~-----~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.|+.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 477888876655444454443333221 111123456899999999999764
No 43
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.10 E-value=0.3 Score=47.27 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=21.3
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|+||.+.+.+ .....+ ...+..+.. .+..|+-||++|+|||+..
T Consensus 2 ~~~f~~~ig~~----~~~~~~-~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA----NSFLEV-LEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC----HHHHHH-HHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC----HHHHHH-HHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 37888877543 333332 222333333 3456788999999999764
No 44
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.66 E-value=2.1 Score=44.81 Aligned_cols=75 Identities=28% Similarity=0.480 Sum_probs=48.2
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhc--CC--cEEEEEEcccCCCceEEe--------------ccC---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLH--GY--NVTIFAYGQTGTGKTFTM--------------EGS---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~--G~--N~~i~aYG~TgSGKTyTm--------------~G~---~~~~G 140 (560)
-+||.|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||++|+|||... -|+ ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 56777766555445555555555542 2332 32 345999999999999654 222 12468
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy7618 141 IMQNAFRQIFDFKQKEK 157 (560)
Q Consensus 141 iipr~l~~lF~~~~~~~ 157 (560)
--++.++.+|.......
T Consensus 249 e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 88999999999776543
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.41 E-value=0.28 Score=47.44 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=30.2
Q ss_pred eeeCCccccCCCcchhhhhccchHHH-HHHh----cCCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMV-NHML----HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l----~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.|+.+.+.+...+.+.+. +..+- ...+ ......|+-||++|+|||+..
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 46788888776655555432 22211 0111 122334889999999999875
No 46
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.38 E-value=0.3 Score=48.50 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=29.9
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhc----CCcEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLH----GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~----G~N~~i~aYG~TgSGKTyTm 132 (560)
++||.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 56777776554444455443333221 1111 23456899999999999765
No 47
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.54 E-value=0.65 Score=45.08 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.9
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556788999999999999864
No 48
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.04 E-value=0.65 Score=48.64 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=23.6
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+++..++......|+..|+||||||.||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45666676667889999999999999874
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.97 E-value=0.42 Score=47.75 Aligned_cols=50 Identities=26% Similarity=0.459 Sum_probs=29.3
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|+||.... ...+...+.. +..++..-- +....++-||++|+|||+.+..
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHH
Confidence 478887753 2234444433 333333211 1234688999999999998643
No 50
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.58 E-value=0.51 Score=48.15 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.1
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.+.|.|++||+|||+|.++|||+..
T Consensus 128 ~~~~~v~vS~~EIYnE~i~DLL~~~ 152 (347)
T 1f9v_A 128 GWDYKVNCEFIEIYNENIVDLLRSD 152 (347)
T ss_dssp TCEEEEEEEEEEEETTEEEETTC--
T ss_pred CCceEEEEEEEEEECCeeeeccCCc
Confidence 3578999999999999999999754
No 51
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=79.19 E-value=0.59 Score=47.91 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||+|.++|||+..
T Consensus 142 ~~~~~v~vS~~EIYnE~i~DLL~~~ 166 (359)
T 1x88_A 142 GTEFSVKVSLLEIYNEELFDLLNPS 166 (359)
T ss_dssp SEEEEEEEEEEEEETTEEEETTCTT
T ss_pred CceEEEEEEEEEEeCceeeehhccc
Confidence 3568899999999999999999754
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.86 E-value=0.27 Score=47.29 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.3
Q ss_pred EEEEcccCCCceEEec
Q psy7618 118 IFAYGQTGTGKTFTME 133 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~ 133 (560)
++-||++|+|||+.+-
T Consensus 52 ~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR 67 (254)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999998763
No 53
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=78.59 E-value=0.7 Score=47.31 Aligned_cols=25 Identities=36% Similarity=0.596 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||+|.++|||+..
T Consensus 151 ~~~~~v~vS~~EIYnE~i~DLL~~~ 175 (359)
T 3nwn_A 151 THAITVRVSYLEIYNESLFDLLSTL 175 (359)
T ss_dssp TSCEEEEEEEEEEETTEEEETTSSS
T ss_pred CCcEEEEEEEEEEeccccccccccc
Confidence 3568899999999999999999754
No 54
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.41 E-value=0.49 Score=47.51 Aligned_cols=43 Identities=21% Similarity=0.407 Sum_probs=27.8
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|+|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 20 ~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 20 VFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 47888887543 33222 233344444455999999999999864
No 55
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=77.94 E-value=1.1 Score=41.85 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=19.2
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455678877 68899999999977
No 56
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=77.83 E-value=0.74 Score=47.11 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=23.0
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.+.+++.-..+.|+..|+||||||.+|.
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 45566666666789999999999999873
No 57
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.63 E-value=0.75 Score=47.37 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.4
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|++||+|||+|.++|||+..
T Consensus 155 ~~~~v~vS~~EIYnE~i~DLL~~~ 178 (373)
T 2wbe_C 155 VEYTMRISYLELYNEELCDLLSTD 178 (373)
T ss_dssp SCEEEEEEEEEEETTEEEESSCTT
T ss_pred ceEEEEEEEEEEeCCeEEECCCCC
Confidence 468999999999999999999743
No 58
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.50 E-value=0.65 Score=46.92 Aligned_cols=25 Identities=40% Similarity=0.732 Sum_probs=22.0
Q ss_pred ccccccccceeeEeecchhhccccc
Q psy7618 284 KRHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 284 ~~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
....|.|++||+|||+|.++|||+.
T Consensus 124 ~~~~~~v~vS~~EIYnE~v~DLL~~ 148 (325)
T 1bg2_A 124 ENLEFHIKVSYFEIYLDKIRDLLDV 148 (325)
T ss_dssp SSEEEEEEEEEEEEETTEEEESSCT
T ss_pred CCceEEEEEEEEEEecCeeeecccC
Confidence 3467899999999999999999974
No 59
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=77.44 E-value=0.66 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.+.|.|++||+|||+|.++|||+..
T Consensus 165 ~~~~~v~vS~~EIYnE~i~DLL~~~ 189 (376)
T 2rep_A 165 GWTYSFVASYVEIYNETVRDLLATG 189 (376)
T ss_dssp TEEEEEEEEEEEEETTEEEETTCCC
T ss_pred CeEEEEEEEEEEEECCEeeEccccc
Confidence 4678999999999999999999753
No 60
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=77.33 E-value=0.67 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.8
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 184 ~~~~~V~vS~lEIYnE~i~DLL~~ 207 (443)
T 2owm_A 184 NISYNVKVSYFEVYNEHVRDLLAP 207 (443)
T ss_dssp TCEEEEEEEEEEEETTEEEETTSC
T ss_pred CceEEEEEEEEEEECCEeeEccCc
Confidence 467899999999999999999975
No 61
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=77.16 E-value=0.74 Score=46.57 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=21.8
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||+|.++|||+..
T Consensus 125 ~~~~~v~vS~~EIYnE~i~DLL~~~ 149 (330)
T 2h58_A 125 DWEYTITVSAAEIYNEVLRDLLGKE 149 (330)
T ss_dssp TEEEEEEEEEEEEETTEEEETTSCS
T ss_pred CceEEEEEEEEEEECCChhhccccc
Confidence 3578999999999999999999743
No 62
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=77.14 E-value=0.66 Score=47.68 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.5
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 137 ~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 137 NMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp TEEEEEEEEEEEEETTEEEETTCT
T ss_pred CeeEEEEEEEEEeeCCeEEEcccc
Confidence 457899999999999999999974
No 63
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=76.66 E-value=1.3 Score=40.59 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.| ++..++||||||.+.
T Consensus 34 i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 34 IPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHccCCC--EEEECCCCCchHHHH
Confidence 445567876 578899999999653
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=76.61 E-value=1.2 Score=40.73 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 345677876 677889999999863
No 65
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=76.49 E-value=0.81 Score=46.68 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=21.2
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|++||+|||+|.++|||+..
T Consensus 122 ~~~~v~vS~~EIYnE~i~DLL~~~ 145 (349)
T 1t5c_A 122 REFLLRVSYMEIYNETITDLLCGT 145 (349)
T ss_dssp EEEEEEEEEEEEETTEEEESSSSS
T ss_pred CcEEEEEEEEEEeCCEEEEccCCC
Confidence 468899999999999999999743
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=76.47 E-value=0.37 Score=47.09 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=14.2
Q ss_pred EEEEcccCCCceEEec
Q psy7618 118 IFAYGQTGTGKTFTME 133 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~ 133 (560)
|+-||++|+|||+.+-
T Consensus 76 vll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR 91 (278)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCcChHHHHHH
Confidence 8999999999998753
No 67
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.45 E-value=0.39 Score=49.03 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=16.5
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+....|+-||++|+|||+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567999999999999764
No 68
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.44 E-value=0.41 Score=47.06 Aligned_cols=51 Identities=20% Similarity=0.444 Sum_probs=30.4
Q ss_pred eeeCCccccCCCcchhhhhccchHHHH-HHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVN-HMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
...|+.+.+.+..-+.+.+.+..|+.. ..+.| ....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 357788776554444444443333321 11222 3467899999999999864
No 69
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.14 E-value=0.84 Score=46.44 Aligned_cols=24 Identities=46% Similarity=0.891 Sum_probs=21.4
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 133 ~~~~~v~vS~~EIYnE~i~DLL~~ 156 (344)
T 4a14_A 133 LLDCLVHVSYLEVYKEEFRDLLEV 156 (344)
T ss_dssp TSEEEEEEEEEEEETTEEEETTSS
T ss_pred ceeeEEEEehhhhhHHHHHHHHHh
Confidence 357889999999999999999974
No 70
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.12 E-value=0.33 Score=47.70 Aligned_cols=50 Identities=16% Similarity=0.312 Sum_probs=28.0
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhcCCc----EEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLHGYN----VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~G~N----~~i~aYG~TgSGKTyTm 132 (560)
.+||.|-+.+.-.+++.+.++.|+- ..++++.+ ..++-||++|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 5677776655555555555555553 23344322 22899999999999764
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.08 E-value=1 Score=47.59 Aligned_cols=45 Identities=20% Similarity=0.160 Sum_probs=30.8
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCc--EEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYN--VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N--~~i~aYG~TgSGKTyTm 132 (560)
+.||.+. .|+++.+. +..+++.+..|.. ..++-||++|+|||+..
T Consensus 34 ~~~~~ii----G~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLV----GQENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEE----SCHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhcc----CHHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 5566665 45566554 4456666666753 36888999999999765
No 72
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.00 E-value=0.67 Score=40.99 Aligned_cols=19 Identities=26% Similarity=0.700 Sum_probs=15.2
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..++-||++|+|||+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3566799999999998643
No 73
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=75.96 E-value=0.37 Score=48.83 Aligned_cols=20 Identities=40% Similarity=0.491 Sum_probs=16.7
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+...+++-||++|+|||+++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHH
Confidence 45567999999999999875
No 74
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=75.66 E-value=0.8 Score=47.11 Aligned_cols=24 Identities=46% Similarity=0.825 Sum_probs=21.5
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 148 ~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 148 NQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp SCEEEEEEEEEEEETTEEEETTSS
T ss_pred CCceEEEEEEEEEeCCEEEECCCC
Confidence 457899999999999999999974
No 75
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=75.54 E-value=0.72 Score=42.25 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.3
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343344999999999999874
No 76
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.49 E-value=0.78 Score=47.43 Aligned_cols=25 Identities=40% Similarity=0.578 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.+.|.|++||+|||+|.++|||+..
T Consensus 146 ~~~~~V~vS~lEIYnE~i~DLL~~~ 170 (388)
T 3bfn_A 146 PWALSVTMSYLEIYQEKVLDLLDPA 170 (388)
T ss_dssp SEEEEEEEEEEEEETTEEEESSSCS
T ss_pred CceEEEEEEEEEEECCeeeehhccC
Confidence 4678999999999999999999743
No 77
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=75.16 E-value=1.1 Score=45.42 Aligned_cols=45 Identities=22% Similarity=0.263 Sum_probs=29.6
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcE--EEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNV--TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~--~i~aYG~TgSGKTyTm 132 (560)
+.||.+.+ |+.+.+. +..++..+-.|... .++-||++|+|||+..
T Consensus 41 ~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 45666554 4444433 34455555666653 8899999999999875
No 78
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.11 E-value=0.82 Score=48.12 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=27.9
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||..... .++...+.. +..++.. .|....++-||++|+|||+.+..
T Consensus 100 ~~~tfd~fv~g-~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 100 PDYTFENFVVG-PGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp TTCSGGGCCCC-TTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCChhhcCCC-CchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 35788875422 223333322 2222222 22134588999999999998743
No 79
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=74.88 E-value=0.55 Score=43.31 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=17.9
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+++|.+ ++..++||||||.+..
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHHH
Confidence 34456766 5678999999998753
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=74.83 E-value=0.92 Score=43.02 Aligned_cols=24 Identities=42% Similarity=0.677 Sum_probs=18.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..+++|.| ++..++||||||.+
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 3455678877 67899999999976
No 81
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.83 E-value=7.2 Score=40.74 Aligned_cols=75 Identities=28% Similarity=0.395 Sum_probs=47.6
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhc--C--CcEEEEEEcccCCCceEEe--------------ccC---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLH--G--YNVTIFAYGQTGTGKTFTM--------------EGS---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~--G--~N~~i~aYG~TgSGKTyTm--------------~G~---~~~~G 140 (560)
-+||.|-+-+.--+++.+.+..|+. ...+. | .--.|+-||+.|+|||.+. -|+ ....|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vG 258 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLG 258 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSS
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCc
Confidence 4667776554444455555555543 12332 3 2357999999999999643 232 12568
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy7618 141 IMQNAFRQIFDFKQKEK 157 (560)
Q Consensus 141 iipr~l~~lF~~~~~~~ 157 (560)
--.+.++.+|.......
T Consensus 259 esek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 259 DGPRLCRQIFKVAGENA 275 (437)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 88999999999876643
No 82
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=74.47 E-value=1.5 Score=41.59 Aligned_cols=23 Identities=43% Similarity=0.743 Sum_probs=18.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.+ ++..++||||||.+
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHH
Confidence 455678887 68889999999976
No 83
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.45 E-value=0.99 Score=46.91 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=50.7
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhc--CC--cEEEEEEcccCCCceEEe--------------ccC---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLH--GY--NVTIFAYGQTGTGKTFTM--------------EGS---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~--G~--N~~i~aYG~TgSGKTyTm--------------~G~---~~~~G 140 (560)
-+||.|-+-+.--+++-+.+..|+. ...+. |. .-.|+-||++|+|||... -|+ ....|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 4677777666555666666667765 23443 32 346999999999999754 222 12457
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy7618 141 IMQNAFRQIFDFKQKEK 157 (560)
Q Consensus 141 iipr~l~~lF~~~~~~~ 157 (560)
--.+.++.+|.......
T Consensus 225 ese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHA 241 (405)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHhC
Confidence 78899999998876653
No 84
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=74.41 E-value=0.89 Score=46.53 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|++||+|||+|.++|||+..
T Consensus 151 ~~~~v~vS~~EIYnE~i~DLL~~~ 174 (358)
T 2nr8_A 151 HAITVRVSYLEIYNESLFDLLSTL 174 (358)
T ss_dssp SCEEEEEEEEEEETTEEEETTSSS
T ss_pred ceEEEEEEEEEEeCCeeeECcCCc
Confidence 468899999999999999999753
No 85
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=74.41 E-value=0.83 Score=46.60 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=21.1
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.+.|.|++||+|||+|.++|||+..
T Consensus 129 ~~~~~v~vS~~EIYnE~i~DLL~~~ 153 (349)
T 3t0q_A 129 GWNYEMECEYIEIYNETILDLLRDF 153 (349)
T ss_dssp TEEEEEEEEEEEEETTEEEETTC--
T ss_pred CceeEEEEEEEEEEcchhhcccccc
Confidence 3578999999999999999999743
No 86
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=73.99 E-value=0.89 Score=46.46 Aligned_cols=24 Identities=42% Similarity=0.760 Sum_probs=21.0
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 138 ~~~~~v~vS~~EIYnE~i~DLL~~ 161 (354)
T 3gbj_A 138 EQSFKVEVSYMEIYNEKVRDLLDP 161 (354)
T ss_dssp TEEEEEEEEEEEEETTEEEETTC-
T ss_pred ccceeeeceeEEEecCeeeEccCC
Confidence 356889999999999999999974
No 87
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=73.99 E-value=0.99 Score=47.07 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.+.|.|++||+|||+|.++|||+..
T Consensus 184 ~~~~~v~vS~~EIYnE~i~DLL~~~ 208 (412)
T 3u06_A 184 GWEYEIKATFLEIYNEVLYDLLSNE 208 (412)
T ss_dssp TEEEEEEEEEEEEETTEEEETTCCS
T ss_pred CceEEEEEEEEEEeCCeeEEcCCCC
Confidence 4678999999999999999999643
No 88
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=73.79 E-value=0.91 Score=46.41 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.5
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 129 ~~~~~v~vS~~EIYnE~i~DLL~~ 152 (355)
T 1goj_A 129 NIEYTVRVSYMEIYMERIRDLLAP 152 (355)
T ss_dssp TEEEEEEEEEEEEETTEEEETTST
T ss_pred CceEEEEEEEEEEECCEEEEcccC
Confidence 457899999999999999999974
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.58 E-value=1.1 Score=46.55 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=21.7
Q ss_pred cccccccceeeEeecchhhcccccCC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVSR 310 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~~ 310 (560)
.+.|.|++||+|||+|.++|||+...
T Consensus 184 ~~~~~v~vS~~EIYnE~i~DLL~~~~ 209 (403)
T 4etp_A 184 GWDYKVNAEFIEIYNENIVDLLRSDN 209 (403)
T ss_dssp TEEEEEEEEEEEEETTEEEETTCC--
T ss_pred CceEEEEEEEEEEecceeeEccCCcc
Confidence 36789999999999999999997543
No 90
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=73.31 E-value=0.96 Score=46.40 Aligned_cols=24 Identities=42% Similarity=0.726 Sum_probs=21.7
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|.++|||+.
T Consensus 132 ~~~~~v~vS~~EIYnE~i~DLL~~ 155 (365)
T 2y65_A 132 NLEFHIKVSYYEIYMDKIRDLLDV 155 (365)
T ss_dssp CEEEEEEEEEEEEETTEEEETTCT
T ss_pred CceEEEEEEEEEEECCeeeecccC
Confidence 467899999999999999999974
No 91
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=72.96 E-value=1.7 Score=40.89 Aligned_cols=24 Identities=29% Similarity=0.630 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.+ ++..++||||||.+.
T Consensus 56 i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 445678877 567789999999863
No 92
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.85 E-value=1.3 Score=44.87 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=24.9
Q ss_pred cchhhhhccchHHHHHHhcCCc-E--EEEEEcccCCCceEEe
Q psy7618 94 TQTEIYENSVRPMVNHMLHGYN-V--TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G~N-~--~i~aYG~TgSGKTyTm 132 (560)
.+++..+. +...+..++.|.. . +++-||++|+|||+++
T Consensus 21 gr~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34444444 3344555555533 4 7899999999999875
No 93
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=72.64 E-value=1.6 Score=42.78 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457999999999999864
No 94
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=72.49 E-value=1.2 Score=43.08 Aligned_cols=24 Identities=33% Similarity=0.661 Sum_probs=18.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++..++.|.| +++.++||||||.+
T Consensus 84 ~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 84 SIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHhCCCc--EEEEccCCCCchHH
Confidence 4455677877 68899999999976
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=72.29 E-value=1.3 Score=43.21 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=17.1
Q ss_pred CCcEEEEEEcccCCCceEEec
Q psy7618 113 GYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.....+.-.|+||||||.++-
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHH
Confidence 445678889999999999863
No 96
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.16 E-value=1.1 Score=46.37 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.8
Q ss_pred cccccccceeeEeecchhhcccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLN 307 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~ 307 (560)
...|.|++||+|||+|.++|||+
T Consensus 186 ~~~~~V~vS~~EIYnE~v~DLL~ 208 (387)
T 2heh_A 186 KLGLEVYVTFFEIYNGKLFDLLN 208 (387)
T ss_dssp TTTCEEEEEEEEEETTEEEETTT
T ss_pred CceEEEEEEEEEecCCeEEECCC
Confidence 35688999999999999999996
No 97
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=72.00 E-value=1.8 Score=40.40 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=18.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.|. +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 4556788775 77899999999874
No 98
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=71.93 E-value=1.1 Score=46.65 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.9
Q ss_pred cccccccceeeEeecchhhcccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLN 307 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~ 307 (560)
...|.|++||+|||+|.++|||+
T Consensus 206 ~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 206 NLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp TTCCEEEEEEEEEETTEEEETTT
T ss_pred CccEEEEEEEEEeeCCEEEECCC
Confidence 35788999999999999999996
No 99
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.87 E-value=2.1 Score=45.22 Aligned_cols=75 Identities=28% Similarity=0.409 Sum_probs=49.0
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhc--C--CcEEEEEEcccCCCceEEe--------------ccC---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLH--G--YNVTIFAYGQTGTGKTFTM--------------EGS---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~--G--~N~~i~aYG~TgSGKTyTm--------------~G~---~~~~G 140 (560)
.+||.|-+-+.--+++-+.+..|+. ...+. | .--.|+-||+.|+|||++. -|+ ....|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 5677776655555555555555554 23343 3 2356999999999999643 222 12467
Q ss_pred hHHHHHHHHHHHHhhhc
Q psy7618 141 IMQNAFRQIFDFKQKEK 157 (560)
Q Consensus 141 iipr~l~~lF~~~~~~~ 157 (560)
--.+.++.+|.......
T Consensus 286 esek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 286 EGARMVRELFEMARTKK 302 (467)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88899999998776644
No 100
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=71.86 E-value=1.6 Score=37.92 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=18.5
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+..+.. .+..|+-||++|+|||+..-
T Consensus 18 ~~~~~~~~-~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 18 REVEAAAK-RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp HHHHHHHT-CSSCEEEEEETTCCHHHHHG
T ss_pred HHHHHHhC-CCCcEEEECCCCccHHHHHH
Confidence 33444433 33447789999999998754
No 101
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.65 E-value=2.1 Score=40.68 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.9
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999865
No 102
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=71.58 E-value=1.7 Score=42.54 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=24.0
Q ss_pred chHHHHHHhcCC---cEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGY---NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~---N~~i~aYG~TgSGKTyTm~ 133 (560)
+...+..+++|. .-||+-||+.|+|||+...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344577888887 3479999999999998643
No 103
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.37 E-value=0.74 Score=48.42 Aligned_cols=50 Identities=30% Similarity=0.520 Sum_probs=32.2
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhc--CC--cEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLH--GY--NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~--G~--N~~i~aYG~TgSGKTyTm 132 (560)
.+||.|-+-+..-+++-+.+..|+. ...+. |. .-.|+-||++|+|||++.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 5677776655545555555555554 23333 32 356999999999999653
No 104
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.23 E-value=1.8 Score=41.44 Aligned_cols=46 Identities=26% Similarity=0.398 Sum_probs=27.5
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhc---------CCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLH---------GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~---------G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.|+.+.+.+..-+++. .++..+.. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVA-----ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTH-----HHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHH-----HHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 367787776544333333 23332211 12346899999999999764
No 105
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=70.70 E-value=1.2 Score=45.48 Aligned_cols=23 Identities=43% Similarity=0.759 Sum_probs=21.0
Q ss_pred cccccccceeeEeecchhhcccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLN 307 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~ 307 (560)
...|.|++||+|||+|.++|||+
T Consensus 134 ~~~~~v~vS~~EIYnE~i~DLL~ 156 (350)
T 2vvg_A 134 NQNFLVIGSYLELYNEEIRDLIK 156 (350)
T ss_dssp TEEEEEEEEEEEEETTEEEETTT
T ss_pred CCcEEEEEEEEEEeCCEEEEccc
Confidence 45788999999999999999996
No 106
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=70.69 E-value=2.1 Score=40.84 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678877 567789999999663
No 107
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=70.59 E-value=1.3 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.1
Q ss_pred ccccccceeeEeecchhhcccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLN 307 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~ 307 (560)
..+.|++||+|||+|.++|||+
T Consensus 135 ~~~~v~vS~~EIYnE~v~DLL~ 156 (360)
T 1ry6_A 135 NTKGIFISFYEIYCGKLYDLLQ 156 (360)
T ss_dssp SCEEEEEEEEEEETTEEEESCC
T ss_pred CceEEEEEEEEeeCCeeEEccc
Confidence 4678999999999999999996
No 108
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=70.37 E-value=1.2 Score=45.60 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.6
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|++||+|||+|.++|||...
T Consensus 125 ~~~~v~vS~~EIYnE~i~DLL~~~ 148 (369)
T 3cob_A 125 FSFSLKAYMVELYQDTLVDLLLPK 148 (369)
T ss_dssp EEEEEEEEEEEECSSCEEESSCCS
T ss_pred ceeEEEEEEEEEeCceeeecCCCc
Confidence 578999999999999999999743
No 109
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=70.34 E-value=2.1 Score=39.64 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.| ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3455677877 677889999999764
No 110
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=70.28 E-value=1.3 Score=45.10 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred ccccccceeeEeecchhhcccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLN 307 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~ 307 (560)
..|.|++||+|||+|.++|||+
T Consensus 148 ~~~~v~vS~~EIYnE~i~DLL~ 169 (344)
T 3dc4_A 148 DAIQVYASFIEIYNEKPFDLLG 169 (344)
T ss_dssp SCCEEEEEEEEEESSCEEETTS
T ss_pred cceEEEEEEEEEeCCeeEEccC
Confidence 4578999999999999999996
No 111
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=70.13 E-value=2 Score=45.28 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=27.6
Q ss_pred CcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..|+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 356666643 345555555666678999999999999765
No 112
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.02 E-value=1.3 Score=41.67 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=20.7
Q ss_pred HHHHhcCC--cEEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGY--NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~--N~~i~aYG~TgSGKTyTm~G 134 (560)
+..++.|. .-+++-||+.|+|||+....
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 44555663 24699999999999988644
No 113
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.91 E-value=0.86 Score=45.75 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=29.2
Q ss_pred eeCCccccCCCcchhhhhccchHHH-HHHhcCC---cEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMV-NHMLHGY---NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~G~---N~~i~aYG~TgSGKTyTm 132 (560)
.+||.|.+.+..-+.+-+.+..|+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 4667776654433444443333332 1233332 246889999999999875
No 114
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=68.48 E-value=2.1 Score=42.40 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=19.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..++.|....+++.++||||||.+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 34566777444578999999999976
No 115
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=68.41 E-value=2.5 Score=39.68 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445677877 567889999999763
No 116
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=68.20 E-value=0.93 Score=45.34 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=28.8
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhcCC---cEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLHGY---NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~G~---N~~i~aYG~TgSGKTyTm 132 (560)
..||.|.+.+.--+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 46777766544444444443333321 122221 346899999999999865
No 117
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=68.18 E-value=2.5 Score=40.43 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=18.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455678877 566789999999763
No 118
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=67.99 E-value=2.3 Score=40.27 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=17.8
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.|. ++.++||||||.+.
T Consensus 60 i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 60 WPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCcCHHHHHH
Confidence 3455688774 56779999999873
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.09 E-value=1.7 Score=43.91 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=24.9
Q ss_pred cchhhhhccchHHHHHHhcC-CcEEEEEEcccCCCceEEe
Q psy7618 94 TQTEIYENSVRPMVNHMLHG-YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G-~N~~i~aYG~TgSGKTyTm 132 (560)
.+++..+. +...+..++.| ...+++-||++|+|||+++
T Consensus 24 gr~~~~~~-l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRD-AAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHH-HHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34445544 33345555544 3458999999999999864
No 120
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=66.96 E-value=2.4 Score=42.22 Aligned_cols=44 Identities=25% Similarity=0.278 Sum_probs=27.3
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHh--cCCcEEEEEEcccCCCceEEe
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHML--HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l--~G~N~~i~aYG~TgSGKTyTm 132 (560)
+|+.+. .|+++.+. +...+..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~ii----G~~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYI----GQESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCC----SCHHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhC----ChHHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 355544 45555554 344454443 234456899999999999764
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=66.94 E-value=1.6 Score=44.80 Aligned_cols=28 Identities=32% Similarity=0.383 Sum_probs=20.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
++..+.-.....+.-.|+||||||.+|-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~ 154 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIA 154 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHH
Confidence 4445444456678999999999999863
No 122
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=66.81 E-value=1.8 Score=40.19 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=17.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.| ++..++||||||.+
T Consensus 35 i~~~~~~~~--~lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 35 IPGALRGES--MVGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 345567876 46789999999976
No 123
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=66.68 E-value=2.7 Score=44.24 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=20.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34566777667789999999999976
No 124
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=66.41 E-value=2.8 Score=39.60 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=19.4
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..++..+..|. .++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34455566675 4578899999999754
No 125
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=66.17 E-value=1.4 Score=44.77 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=28.6
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhcCC---cEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLHGY---NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~G~---N~~i~aYG~TgSGKTyTm 132 (560)
.+|+.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 56777766554444444443333221 222221 235888999999999864
No 126
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.02 E-value=1.5 Score=43.76 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+...+..|.-..++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 344444553334889999999999875
No 127
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=66.01 E-value=1.6 Score=38.04 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=15.7
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34556899999999998753
No 128
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=65.60 E-value=2.7 Score=42.79 Aligned_cols=26 Identities=38% Similarity=0.631 Sum_probs=20.7
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 34566778888 688999999999773
No 129
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.22 E-value=1.7 Score=44.30 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.5
Q ss_pred ccccccceeeEeecchhhccccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~ 308 (560)
..|.+++||+|||+|.++|||+.
T Consensus 151 ~~~~v~vS~~EIYnE~i~DLL~~ 173 (355)
T 3lre_A 151 KICSTAVSYLEVYNEQIRDLLVN 173 (355)
T ss_dssp EEEEEEEEEEEEETTEEEESSSC
T ss_pred ceEEEEEEEEEEECCEEEECcCC
Confidence 45789999999999999999963
No 130
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=64.11 E-value=1.4 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=15.3
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|+-||++|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999764
No 131
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=63.89 E-value=2.7 Score=39.96 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=18.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++++.+ ++.+|+||+|||+...
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 334566655 6678899999998754
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=63.66 E-value=1.2 Score=44.95 Aligned_cols=20 Identities=50% Similarity=0.679 Sum_probs=16.3
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34567899999999999764
No 133
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=63.62 E-value=3.3 Score=40.74 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=21.2
Q ss_pred cchHHHHHHhcCC-----cEEEEEEcccCCCceEE
Q psy7618 102 SVRPMVNHMLHGY-----NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 102 ~~~plv~~~l~G~-----N~~i~aYG~TgSGKTyT 131 (560)
++..++..++.|+ ...|+..|++|||||+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 3455555555542 35789999999999975
No 134
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.04 E-value=2.2 Score=45.47 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.2
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
.....|+-||++|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999864
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=62.93 E-value=2.1 Score=39.55 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++-||++|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999864
No 136
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=62.59 E-value=2.9 Score=40.91 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 67999999999999764
No 137
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=62.56 E-value=2.8 Score=41.17 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=17.0
Q ss_pred cCCcEEEEEEcccCCCceEEec
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|....++-||++|+|||++..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHHH
Confidence 4544458999999999998653
No 138
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.48 E-value=2.9 Score=42.67 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=19.5
Q ss_pred HHHhcC---CcEEEEE--EcccCCCceEEe
Q psy7618 108 NHMLHG---YNVTIFA--YGQTGTGKTFTM 132 (560)
Q Consensus 108 ~~~l~G---~N~~i~a--YG~TgSGKTyTm 132 (560)
..+..| ....++. ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555556 5567888 999999999865
No 139
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.46 E-value=2.3 Score=46.23 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=19.1
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+++.+.+|.+.++++ ++||||||.+++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~~ 217 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAFQ 217 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHHH
Confidence 334444576665554 9999999998653
No 140
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.38 E-value=2 Score=43.06 Aligned_cols=25 Identities=36% Similarity=0.478 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEEEcccCCCceEEec
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.+-.|.-..++-||+.|+|||+++.
T Consensus 40 ~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 40 FVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHhcCCCceEEEECCCCCCHHHHHH
Confidence 3335533337889999999999864
No 141
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=62.29 E-value=3.6 Score=41.95 Aligned_cols=25 Identities=36% Similarity=0.666 Sum_probs=19.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 3455678887 678899999999764
No 142
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=61.41 E-value=3.4 Score=41.99 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=20.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 445667775556788999999999873
No 143
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=61.37 E-value=2.4 Score=45.48 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=16.5
Q ss_pred cCCcEEEEEEcccCCCceEEec
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|.+ ++-.|+||||||.||-
T Consensus 259 ~g~~--i~I~GptGSGKTTlL~ 278 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTLN 278 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHHH
Confidence 5666 6779999999999863
No 144
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=59.24 E-value=3 Score=46.01 Aligned_cols=28 Identities=32% Similarity=0.281 Sum_probs=19.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|..++.... ..+-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~-~~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKE-LAIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSS-EEEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCC-ceEEECCCCCCHHHHHHH
Confidence 4566664433 446789999999999653
No 145
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=59.14 E-value=4.5 Score=39.65 Aligned_cols=24 Identities=38% Similarity=0.592 Sum_probs=18.0
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.+ ++..++||||||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 345567876 567899999999764
No 146
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=59.00 E-value=4.1 Score=41.32 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.+ ++..++||||||.+.
T Consensus 52 i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 52 IPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhcCCC--EEEECCCCcHHHHHH
Confidence 455667877 677899999999754
No 147
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=58.95 E-value=3.3 Score=42.45 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.0
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.| ++..++||||||..
T Consensus 30 i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 30 AKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHhcCCC--EEEEeCCCCCHHHH
Confidence 445567876 57899999999983
No 148
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=58.78 E-value=2 Score=41.97 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=15.1
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...++-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456888999999999864
No 149
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=58.68 E-value=3.5 Score=40.63 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=25.9
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHh--cCCcEEEEEEcccCCCceEEe
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHML--HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l--~G~N~~i~aYG~TgSGKTyTm 132 (560)
+|+.+.+. +.+... +..++..+. .+....|+-||++|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 56666544 333333 233343333 234467888999999999764
No 150
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.55 E-value=4.1 Score=40.97 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=19.3
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|....++..++||||||.+.
T Consensus 36 i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 36 LPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 45567774455788899999999764
No 151
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=58.45 E-value=3 Score=39.04 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.7
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.-+-++.++.| ....+.-+|++|||||..+.
T Consensus 8 tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 8 TGSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 356778888864 34578889999999998763
No 152
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=58.10 E-value=1.7 Score=45.61 Aligned_cols=17 Identities=35% Similarity=0.722 Sum_probs=14.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56889999999999875
No 153
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=57.25 E-value=38 Score=24.23 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy7618 505 MREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQM 541 (560)
Q Consensus 505 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (560)
++.+|+++...|.++......|.++.+.+-...+++|
T Consensus 18 qV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 18 EVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666666666666666556666666665555444443
No 154
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=55.70 E-value=3.8 Score=45.83 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||+|.++|||+..
T Consensus 506 ~~~~~v~~s~~Eiyne~i~DLl~~~ 530 (715)
T 4h1g_A 506 GWSYTVRGKFIEIYNEAIVDLLNPK 530 (715)
T ss_dssp TEEEEEEEEEEEEETTEEEESSSCC
T ss_pred CceEEEEEEEEEEECCEEEECCCCC
Confidence 4578899999999999999999753
No 155
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=55.61 E-value=5.4 Score=40.57 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.|. +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 3455788774 67899999999754
No 156
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=55.41 E-value=6.2 Score=42.29 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=20.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..++.|.+-.+++.++||||||.+
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 45566766666789999999999976
No 157
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=55.16 E-value=5.6 Score=41.33 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=18.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.+ +++.++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 455678877 578889999999863
No 158
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=55.06 E-value=4 Score=40.37 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=16.6
Q ss_pred cCC-cEEEEEEcccCCCceEEec
Q psy7618 112 HGY-NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 112 ~G~-N~~i~aYG~TgSGKTyTm~ 133 (560)
.|. ...++-||++|+|||+++.
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHH
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 443 3568889999999998753
No 159
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=54.57 E-value=3.3 Score=44.19 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=19.3
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.+..++..++||||||.+
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHH
Confidence 4556777445578899999999987
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.37 E-value=2.7 Score=41.07 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=16.2
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344334899999999999864
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.35 E-value=3.8 Score=41.05 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=13.6
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999875
No 162
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=53.84 E-value=2.4 Score=42.24 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=17.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
...+..|. .|+-||++|+|||+.+.
T Consensus 40 ~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 33444454 57889999999998753
No 163
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=53.70 E-value=2.9 Score=37.41 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
-.+...|++|||||+.+-
T Consensus 10 ei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 356789999999998864
No 164
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=53.28 E-value=4.3 Score=37.87 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=18.2
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++++++-.|.-.+ -.|++|||||+.+
T Consensus 14 ~~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHHhccCCCEEE--EECCCCCCHHHHH
Confidence 3455555665544 4899999999865
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=52.90 E-value=5 Score=37.08 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=22.9
Q ss_pred chHHHHHHhc-CC--cEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLH-GY--NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~-G~--N~~i~aYG~TgSGKTyTm 132 (560)
.-+-++.++. |. ...+.-+|++|||||..+
T Consensus 10 G~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 10 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SCHHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CChhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 4567788885 43 457888999999999875
No 166
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=52.62 E-value=6.5 Score=39.52 Aligned_cols=25 Identities=20% Similarity=0.485 Sum_probs=18.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.+ ++..++||||||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 3456677877 567789999999764
No 167
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=52.35 E-value=6.8 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=19.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+|..+++|.+ +++.++||+|||.+
T Consensus 52 ~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 52 TINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHcCCC--EEEEECCCChHHHH
Confidence 4556678888 67889999999975
No 168
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=52.17 E-value=5.6 Score=44.06 Aligned_cols=46 Identities=28% Similarity=0.440 Sum_probs=32.6
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|.+... .|...|..-+.. +++.+-.|... ....|.||||||+||-.
T Consensus 2 ~~~~~~-~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444443 788888887765 56666667543 34579999999999964
No 169
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.00 E-value=6.3 Score=37.66 Aligned_cols=16 Identities=44% Similarity=0.667 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5689999999999974
No 170
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.90 E-value=4.9 Score=39.29 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=16.0
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.-..++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333889999999999865
No 171
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.71 E-value=3.9 Score=40.87 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=14.2
Q ss_pred EEEEcccCCCceEEec
Q psy7618 118 IFAYGQTGTGKTFTME 133 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~ 133 (560)
++-||++|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7889999999999863
No 172
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=51.09 E-value=6.9 Score=41.47 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=19.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3455678877 577889999999764
No 173
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.08 E-value=5 Score=38.88 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=17.4
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++.|.++ +..++||||||.+..
T Consensus 122 i~~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHHHhcCCe--EEEcCCCCCcHHHHH
Confidence 4445556554 339999999998754
No 174
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=51.07 E-value=4.2 Score=37.52 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.6
Q ss_pred chHHHHHHhc-CC--cEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLH-GY--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~-G~--N~~i~aYG~TgSGKTyTm~ 133 (560)
.-+.++.++. |. ...+.-+|++|||||+.+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 3455667765 42 3456779999999998764
No 175
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=51.04 E-value=4.6 Score=44.26 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=16.5
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
+..++..|++|||||+|+-.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ 183 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAK 183 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHH
Confidence 45688999999999998743
No 176
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=51.02 E-value=3.8 Score=42.62 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.4
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
+.-++..|+||||||.++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~ 72 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRE 72 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHH
Confidence 55678999999999998633
No 177
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=50.95 E-value=5.9 Score=39.70 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999875
No 178
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.67 E-value=4.4 Score=35.38 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|++|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999973
No 179
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=50.65 E-value=46 Score=32.25 Aligned_cols=87 Identities=8% Similarity=0.208 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCC-Ccchhhh
Q psy7618 21 LHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-ATQTEIY 99 (560)
Q Consensus 21 ~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~-a~Q~~vf 99 (560)
|.+...+.+|.||.|+=+-+-..++ -+.++-...+++- .+..+.|.|++|.+.. .+-+++|
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~-------~~~IdY~~~tI~~-----------~~~~~~y~F~RiIp~~~~~e~~ll 65 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISE-------KLIVNYSDESIED-----------MKNHKTYKFTKLIQNFSHQNKDLF 65 (275)
T ss_dssp ------------CEEEEEETTTSCT-------TEEEETTTTEEEE-----------TTTTEEEECSEEEEECSSSCCCGG
T ss_pred ccccHHHhcCcEEEEEEEccccCCc-------cEEEecccceecc-----------CCCccEEEEEeeeccccCCHHHHH
Confidence 5667778899999999885532222 2556666666641 2346789999998654 3444555
Q ss_pred hccchHHHHHHh-cCCcEEEEEEcccC
Q psy7618 100 ENSVRPMVNHML-HGYNVTIFAYGQTG 125 (560)
Q Consensus 100 ~~~~~plv~~~l-~G~N~~i~aYG~Tg 125 (560)
..-++...+-++ .+.|+.||+.++.-
T Consensus 66 ~qE~~~Y~DmCL~k~~NfnlISiS~~~ 92 (275)
T 4gkp_A 66 KEDLHVYIDFCLKRRENFNLFSVGSSN 92 (275)
T ss_dssp GTHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred HHHHHHHHHHHhccCCCceEEEecCCC
Confidence 555899999998 78999999998644
No 180
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=50.46 E-value=5.2 Score=39.57 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=15.8
Q ss_pred CCcEEEEEEcccCCCceEE
Q psy7618 113 GYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyT 131 (560)
..+..|+-||++|+|||+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 4466788999999999975
No 181
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=49.99 E-value=6 Score=36.27 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=20.2
Q ss_pred hHHHHHHhc---CCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLH---GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~---G~N~~i~aYG~TgSGKTyTm 132 (560)
..+++.++. .....|...|++|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 345555553 34467888999999999764
No 182
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=49.13 E-value=3.4 Score=47.26 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=22.3
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+..+++.+..+....++-||++|+|||+.+.+
T Consensus 179 i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 179 IRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 33455444556555678899999999987743
No 183
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=48.56 E-value=5 Score=40.35 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455667877 467899999999773
No 184
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=48.18 E-value=5.4 Score=43.76 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=19.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|..++. +..++..|+.|||||+|+..
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHHH
Confidence 3445554 34567899999999999754
No 185
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=48.10 E-value=8.1 Score=42.56 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=17.8
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..++.|.| ++..++||||||..
T Consensus 22 i~~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 22 ALPAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHcCCC--EEEEcCCCchHHHH
Confidence 345567877 46888999999985
No 186
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=48.04 E-value=5.6 Score=36.66 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHhc--CCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLH--GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~--G~N~~i~aYG~TgSGKTyTm 132 (560)
.+++.+.. +..-.|.-.|++|||||+.+
T Consensus 10 ~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 10 GVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 34444432 34456777899999999754
No 187
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=47.71 E-value=9.7 Score=41.09 Aligned_cols=26 Identities=35% Similarity=0.572 Sum_probs=19.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++..++.|.+.-+++.++||||||.+
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 44556666556778999999999986
No 188
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=47.28 E-value=7.5 Score=40.96 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=20.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++..+-.+....++-||++|+|||+...+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 44444445556678899999999987654
No 189
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=47.20 E-value=8.7 Score=40.57 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=18.3
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445568877 467899999999763
No 190
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=47.05 E-value=5.6 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=17.9
Q ss_pred HHhcCCcEEEEEEcccCCCceEEe
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+-.|....++..|+||||||...
T Consensus 383 ~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 383 DMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHSSSCCCCEEECCSSSSHHHHH
T ss_pred hccccCCCcEEEEcCCCCCHHHHH
Confidence 333455556789999999999764
No 191
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=46.82 E-value=6.1 Score=40.15 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=14.6
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.+. .-.|+||||||+++
T Consensus 174 ~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp TTCCE--EEEESSSSCHHHHH
T ss_pred cCCEE--EEECCCCCCHHHHH
Confidence 56654 44599999999876
No 192
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=46.81 E-value=4.4 Score=36.47 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999754
No 193
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=46.62 E-value=4.1 Score=38.59 Aligned_cols=20 Identities=25% Similarity=0.152 Sum_probs=17.1
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...++-||++|||||..+++
T Consensus 12 G~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHH
Confidence 45788899999999998776
No 194
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=46.59 E-value=4.4 Score=41.16 Aligned_cols=18 Identities=39% Similarity=0.637 Sum_probs=15.1
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999864
No 195
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=46.57 E-value=6.4 Score=41.30 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..|.+++..+ +..+-.| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~----~~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIV----MKAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHH----HHHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH----HHHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 55788777653 3333333 348899999999999875
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=46.54 E-value=4.8 Score=37.17 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35677899999999864
No 197
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=46.45 E-value=5.7 Score=35.21 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=13.8
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|.+|||||+.
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999875
No 198
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.21 E-value=5.7 Score=35.05 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|.+|||||+.
T Consensus 3 ~~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEecCCCCCHHHH
Confidence 3588999999999973
No 199
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.08 E-value=4 Score=38.83 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=17.4
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35689999999999999876
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=45.98 E-value=9.4 Score=34.90 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=23.8
Q ss_pred chHHHHHHhc-CC--cEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLH-GY--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~-G~--N~~i~aYG~TgSGKTyTm~ 133 (560)
.-+-++.++. |. ...+.-+|++|||||..+.
T Consensus 5 G~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 5 GTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp SCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred CcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 4467788886 54 3578999999999998753
No 201
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=45.64 E-value=8.5 Score=42.42 Aligned_cols=25 Identities=36% Similarity=0.393 Sum_probs=19.2
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++..+++|.+ ++..++||||||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3455667877 578899999999864
No 202
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=45.53 E-value=4.7 Score=36.66 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566799999999764
No 203
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.48 E-value=4.5 Score=42.39 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 3456778764 57889999999986
No 204
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=44.88 E-value=5 Score=42.90 Aligned_cols=17 Identities=35% Similarity=0.559 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999875
No 205
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=44.87 E-value=6.2 Score=35.25 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|.+|||||+.
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 206
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=44.71 E-value=4.3 Score=37.02 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=15.6
Q ss_pred EEEEEcccCCCceEEecc
Q psy7618 117 TIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G 134 (560)
.++-||+.|||||+.+++
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999998766
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=44.68 E-value=5.4 Score=38.84 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=15.7
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
|+-++...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999765
No 208
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=44.68 E-value=4.1 Score=41.74 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=15.2
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++..|+||||||+++.-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHH
Confidence 34456789999999988643
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=44.29 E-value=8.4 Score=43.25 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=23.4
Q ss_pred cchhhhhccchHHHHHHhcCCc------EEEEEEcccCCCceEEe
Q psy7618 94 TQTEIYENSVRPMVNHMLHGYN------VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G~N------~~i~aYG~TgSGKTyTm 132 (560)
.|.+..+. +...+.....|.. +.++-||++|+|||++.
T Consensus 495 Gq~~a~~~-l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVA-VAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHH-HHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHH-HHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 34444444 2333444444443 37999999999999863
No 210
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=44.24 E-value=9.6 Score=37.65 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=17.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344566632 3578899999999874
No 211
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=44.04 E-value=5.4 Score=39.41 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=16.6
Q ss_pred HHhcCCcEEEEEEcccCCCceEEe
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 212
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=43.87 E-value=9.1 Score=40.54 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.6
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||++|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999865
No 213
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=43.81 E-value=9.9 Score=39.63 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=17.8
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.+ ++..|+||||||.+.
T Consensus 102 i~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 344566654 677899999999875
No 214
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=43.78 E-value=5.9 Score=39.98 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=14.7
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 356888999999999763
No 215
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=43.71 E-value=8.2 Score=38.73 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.3
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457788999999999875
No 216
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=43.65 E-value=5.3 Score=41.63 Aligned_cols=23 Identities=26% Similarity=0.640 Sum_probs=19.7
Q ss_pred HhcCCcEEEEEEcccCCCceEEe
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+++|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57899999999999999999865
No 217
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=43.47 E-value=6.2 Score=40.53 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=17.6
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++.| .++..++||+|||.+..
T Consensus 18 i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 18 YAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 3455667 45667999999998754
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=43.16 E-value=5.3 Score=35.86 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=14.2
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|.-.|++|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778999999999864
No 219
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=43.11 E-value=9.3 Score=43.57 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+.|+-||++|+|||++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999764
No 220
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.06 E-value=6.3 Score=35.10 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|.+|||||+.
T Consensus 13 ~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 13 NILLTGTPGVGKTTL 27 (180)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEEeCCCCCHHHH
Confidence 478899999999974
No 221
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=43.05 E-value=5.1 Score=36.21 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.4
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999865
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=42.95 E-value=10 Score=42.48 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999764
No 223
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=42.65 E-value=5.1 Score=36.74 Aligned_cols=16 Identities=25% Similarity=0.540 Sum_probs=13.3
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||.++
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999875
No 224
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=42.46 E-value=8.9 Score=43.40 Aligned_cols=74 Identities=24% Similarity=0.416 Sum_probs=46.0
Q ss_pred eeCCccccCCCcchhhhhccchHHHH-HHhcCCc----EEEEEEcccCCCceEEec------c--------C---CCCcC
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVN-HMLHGYN----VTIFAYGQTGTGKTFTME------G--------S---QMERG 140 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~G~N----~~i~aYG~TgSGKTyTm~------G--------~---~~~~G 140 (560)
.+||.|-+-+..-+++.+.+..|+-. .++.++. ..|+-||+.|+|||...- | + ....|
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 45666665554444454444444442 3444443 469999999999996542 1 1 12457
Q ss_pred hHHHHHHHHHHHHhhh
Q psy7618 141 IMQNAFRQIFDFKQKE 156 (560)
Q Consensus 141 iipr~l~~lF~~~~~~ 156 (560)
-....++.+|+.....
T Consensus 281 ese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKN 296 (806)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7788899999877654
No 225
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=42.45 E-value=5.9 Score=39.31 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=14.1
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|.-.|++|||||.++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46666799999999886
No 226
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=42.25 E-value=5.2 Score=36.21 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.6
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999865
No 227
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=42.03 E-value=8.5 Score=37.87 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=15.5
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+....|.-.|++|||||+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 44566778899999999753
No 228
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.03 E-value=10 Score=40.40 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=14.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4899999999999875
No 229
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.22 E-value=9.6 Score=40.64 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++..+..|. .|+-||++|+|||+..
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHH
Confidence 444445554 5788999999999875
No 230
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=41.19 E-value=10 Score=35.22 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=22.1
Q ss_pred chHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
+-+-++.++.| ....++-+|++|||||..+.
T Consensus 8 G~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 8 GIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp CCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHH
T ss_pred CchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34456777654 34577889999999998743
No 231
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=40.42 E-value=8.3 Score=43.70 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=19.0
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++. +..++..|+.|||||+|+..
T Consensus 369 v~~~l~--~~~~lI~GppGTGKT~~i~~ 394 (802)
T 2xzl_A 369 VSHVLQ--RPLSLIQGPPGTGKTVTSAT 394 (802)
T ss_dssp HHHHTT--CSEEEEECSTTSSHHHHHHH
T ss_pred HHHHhc--CCCEEEECCCCCCHHHHHHH
Confidence 444544 33567899999999999754
No 232
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=40.24 E-value=7.6 Score=38.46 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..+.-.|++|||||.|+
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 46788999999999986
No 233
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=39.89 E-value=6.6 Score=42.87 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=16.7
Q ss_pred CcEEEEEEcccCCCceEEec
Q psy7618 114 YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~ 133 (560)
.++.++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567889999999999975
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=39.64 E-value=6.6 Score=35.29 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4667899999999864
No 235
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=39.55 E-value=6.6 Score=35.63 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677899999999754
No 236
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=39.21 E-value=9 Score=43.38 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=19.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|..++.+ ..++..|+.|||||+|+..
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHHH
Confidence 34455543 4567899999999999754
No 237
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=38.95 E-value=6.9 Score=36.64 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=14.3
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
..+.-.|++|||||..+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHH
Confidence 345669999999998764
No 238
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=38.95 E-value=8.6 Score=35.02 Aligned_cols=15 Identities=47% Similarity=0.623 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|++|||||+.
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999975
No 239
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=38.67 E-value=9.5 Score=44.02 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 445578877 467899999999874
No 240
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=38.46 E-value=8.2 Score=36.04 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=9.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566899999999875
No 241
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=38.39 E-value=9.4 Score=41.44 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.2
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
+..++..|+.|||||+|+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 35677899999999998754
No 242
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=38.36 E-value=14 Score=43.02 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=17.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445567764 68899999999954
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.34 E-value=7 Score=38.56 Aligned_cols=19 Identities=42% Similarity=0.618 Sum_probs=15.2
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|...|++|+|||+|+.-
T Consensus 106 ~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4666789999999998743
No 244
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=38.24 E-value=9.2 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999753
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=38.15 E-value=8.6 Score=43.07 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.+++.+.......++-||++|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 34444445555667889999999998764
No 246
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=38.10 E-value=6.3 Score=36.28 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=16.2
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
-..+-||+.|||||..+++
T Consensus 9 ~i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 3678899999999998776
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=37.77 E-value=7.4 Score=35.78 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
++.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999865
No 248
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=37.61 E-value=14 Score=41.28 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=21.3
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.++..+..+....++-||++|+|||...-+
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 344444455656688999999999987643
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.57 E-value=15 Score=41.57 Aligned_cols=75 Identities=24% Similarity=0.362 Sum_probs=44.6
Q ss_pred eeeCCccccCCCcchhhhhccchHHHH-HHhc----CCcEEEEEEcccCCCceEEecc---C--------------CCCc
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVN-HMLH----GYNVTIFAYGQTGTGKTFTMEG---S--------------QMER 139 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~----G~N~~i~aYG~TgSGKTyTm~G---~--------------~~~~ 139 (560)
.+.||.|.+.+..-+.+.+.+..|+.. .++. .....|+-||++|+|||+.+-. . ....
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 467777776655555555444333331 1222 1234688999999999976521 1 1135
Q ss_pred ChHHHHHHHHHHHHhhh
Q psy7618 140 GIMQNAFRQIFDFKQKE 156 (560)
Q Consensus 140 Giipr~l~~lF~~~~~~ 156 (560)
|-....+..+|+.....
T Consensus 280 g~~~~~l~~vf~~a~~~ 296 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 66777788888876543
No 250
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=37.54 E-value=9.4 Score=33.98 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|++|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999974
No 251
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=37.48 E-value=6.8 Score=39.30 Aligned_cols=19 Identities=42% Similarity=0.644 Sum_probs=14.8
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.+ +.-.|+||||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 5654 556799999999876
No 252
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=37.31 E-value=8.8 Score=33.73 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|++|||||+.
T Consensus 6 ~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 6 NIFLVGPMGAGKSTI 20 (173)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477899999999975
No 253
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=37.27 E-value=9.5 Score=40.78 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=18.4
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++..+++|.++ +..++||||||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 44556788875 55679999999753
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.03 E-value=11 Score=36.00 Aligned_cols=14 Identities=43% Similarity=0.517 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.|+..|++|||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47889999999987
No 255
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=36.68 E-value=14 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.3
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
.....|...|++|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34456778899999999653
No 256
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=36.40 E-value=16 Score=41.25 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=18.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445578877 567899999999764
No 257
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=36.23 E-value=12 Score=41.44 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.5
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 799999999999999999774
No 258
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=36.20 E-value=10 Score=33.90 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999974
No 259
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.02 E-value=7.7 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.254 Sum_probs=13.4
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999764
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=35.85 E-value=7.6 Score=35.55 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3567899999999875
No 261
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=35.32 E-value=13 Score=33.55 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=15.5
Q ss_pred cCCcEEEEEEcccCCCceEE
Q psy7618 112 HGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..-.|.-.|++|||||+.
T Consensus 5 ~~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHH
T ss_pred ccCceEEEEECCCCCCHHHH
Confidence 44556788999999999964
No 262
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=35.27 E-value=19 Score=36.10 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=24.8
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.++.| ....+.-||++|||||..+.
T Consensus 106 TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 106 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred cCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 356678999964 34678899999999998653
No 263
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=35.18 E-value=7.9 Score=36.07 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999765
No 264
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=35.15 E-value=14 Score=32.10 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568999999999764
No 265
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=35.14 E-value=15 Score=40.55 Aligned_cols=47 Identities=34% Similarity=0.475 Sum_probs=35.5
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|....=|.|...|..-++. +++.+-.|... ....|.|||||||||-.
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred ceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 6666778899999988765 56666667533 34569999999999964
No 266
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=35.02 E-value=10 Score=38.57 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|.-.|++|||||.|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46888999999999986
No 267
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=34.50 E-value=14 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 689999999999999999774
No 268
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.11 E-value=14 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=17.7
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTy 130 (560)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3455678876 5778999999994
No 269
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=34.03 E-value=12 Score=33.66 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999974
No 270
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=33.91 E-value=1.1e+02 Score=22.54 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy7618 505 MREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMK 542 (560)
Q Consensus 505 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (560)
++.+|+++...+.++......|.++.+.+--..++++.
T Consensus 15 ev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 15 EVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66667777766666666666676666666666666554
No 271
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.83 E-value=12 Score=33.38 Aligned_cols=16 Identities=31% Similarity=0.654 Sum_probs=13.5
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 4 ~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999874
No 272
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=33.83 E-value=12 Score=33.34 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 273
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=33.79 E-value=21 Score=35.87 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.5
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
++.+-++.+|.| ....+.-+|++|||||..+
T Consensus 115 TG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 115 TGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp CSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 356778888865 4567889999999999754
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=33.51 E-value=21 Score=35.14 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=25.3
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.++.| ....++-||++|||||..+.
T Consensus 82 TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 82 TSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp CSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 467888999964 34678999999999997643
No 275
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=33.49 E-value=15 Score=41.51 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.2
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 689999999999999999764
No 276
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=33.36 E-value=13 Score=38.51 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4788999999999873
No 277
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=33.21 E-value=11 Score=41.84 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=14.7
Q ss_pred hcCCcEEEEEEcccCCCceE
Q psy7618 111 LHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTy 130 (560)
++|. .++..|+||||||+
T Consensus 153 l~rk--~vlv~apTGSGKT~ 170 (677)
T 3rc3_A 153 MQRK--IIFHSGPTNSGKTY 170 (677)
T ss_dssp SCCE--EEEEECCTTSSHHH
T ss_pred cCCC--EEEEEcCCCCCHHH
Confidence 4553 57899999999998
No 278
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=33.02 E-value=12 Score=41.67 Aligned_cols=31 Identities=29% Similarity=0.383 Sum_probs=21.0
Q ss_pred CcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 26 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 26 PPQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 4466666542 234544 788999999999653
No 279
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=32.75 E-value=15 Score=38.60 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=17.9
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..++.|.+ ++..|+||||||.+.+
T Consensus 122 i~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 122 VFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 344455644 4778999999998864
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=32.74 E-value=12 Score=37.15 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=15.4
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
..|+..|++|+|||+|+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 468889999999999863
No 281
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=32.62 E-value=10 Score=41.84 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.4
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
.++.++..|..|||||+||..
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHH
Confidence 356788899999999999753
No 282
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=32.53 E-value=13 Score=32.82 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=13.5
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|.-.|+.|||||+.
T Consensus 9 ~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAV 24 (175)
T ss_dssp EEEEEECSTTSCHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 4678889999999975
No 283
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.37 E-value=12 Score=32.79 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 378899999999874
No 284
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=32.34 E-value=13 Score=41.29 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..-|.+++.. +++|.| ++..|+||||||...
T Consensus 27 ~~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 27 FPPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred CHHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 3456666644 345665 578899999999764
No 285
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=32.34 E-value=18 Score=42.70 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++.++-.|...-++..|+||||||..
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 33444457766789999999999965
No 286
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=32.33 E-value=13 Score=33.09 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999964
No 287
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=32.32 E-value=19 Score=35.61 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=24.8
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.++.| ....+.-||++|||||..+.
T Consensus 91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 466778999964 34578999999999997653
No 288
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=32.24 E-value=12 Score=36.89 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.1
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++.||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58999999999999865
No 289
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=32.17 E-value=15 Score=41.69 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 689999999999999999774
No 290
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=32.10 E-value=16 Score=42.54 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999774
No 291
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=32.10 E-value=17 Score=42.65 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+..++.|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 3445577766 58899999999965
No 292
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=31.94 E-value=14 Score=33.69 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|++|||||..
T Consensus 14 ~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 14 PLVVCGPSGVGKGTL 28 (204)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999864
No 293
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.72 E-value=18 Score=42.06 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=21.6
Q ss_pred CCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 91 ~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++.-|.+.+. .++.|.+ ++..++||||||..
T Consensus 87 L~~~Q~eai~--------~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 87 LDPFQDTAIS--------CIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp CCHHHHHHHH--------HHHHTCE--EEEECCTTSCHHHH
T ss_pred CCHHHHHHHH--------HHHcCCC--EEEECCCCCChHHH
Confidence 4445655554 3456765 78899999999975
No 294
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.66 E-value=12 Score=34.48 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.7
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
..+-.|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999975
No 295
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=31.55 E-value=16 Score=41.14 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.3
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 689999999999999999764
No 296
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=31.35 E-value=14 Score=34.34 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=15.8
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
-+...|+-.|+||||||...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHH
T ss_pred ECCEEEEEECCCCCCHHHHH
Confidence 34566899999999998754
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=31.32 E-value=14 Score=32.70 Aligned_cols=16 Identities=44% Similarity=0.594 Sum_probs=9.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688899999999974
No 298
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=31.30 E-value=13 Score=36.60 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++.+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67889999999999765
No 299
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=31.23 E-value=13 Score=41.16 Aligned_cols=32 Identities=31% Similarity=0.502 Sum_probs=21.2
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..-|.+++... +.+|. .++..|+||||||...
T Consensus 32 ~~~Q~~~i~~~-------~~~~~--~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 32 NPPQTEAVKKG-------LLEGN--RLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CHHHHHHHHTT-------TTTTC--CEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH-------hcCCC--cEEEEcCCCCcHHHHH
Confidence 34466666542 23444 4688999999999874
No 300
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=31.19 E-value=17 Score=42.22 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999774
No 301
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=31.01 E-value=10 Score=41.09 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=15.8
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
.-++..|.||||||+.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~t 233 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNA 233 (574)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHH
Confidence 4578999999999988654
No 302
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=31.01 E-value=16 Score=36.86 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
-.|+-.|+||||||..
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 3689999999999864
No 303
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=30.96 E-value=11 Score=35.32 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999764
No 304
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=30.90 E-value=17 Score=38.02 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=15.9
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...|+..|++|+|||+|+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35677779999999998643
No 305
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=30.88 E-value=14 Score=33.13 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999874
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=30.86 E-value=13 Score=33.05 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|..|||||+.
T Consensus 5 I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 5 AVLVGLPGSGKSTI 18 (184)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999874
No 307
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.76 E-value=19 Score=42.28 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=18.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTy 130 (560)
.+..++.|.| +++.++||||||.
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHH
Confidence 3556678876 5789999999998
No 308
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=30.72 E-value=23 Score=36.01 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=17.7
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.-..|+-+|+.|+|||+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 576777899999999999864
No 309
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.70 E-value=13 Score=33.72 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588899999999974
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=30.63 E-value=13 Score=32.81 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|+.|||||+.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 367789999999874
No 311
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=30.61 E-value=21 Score=37.28 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.2
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...|+..|++|+|||+|...
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 46788999999999999754
No 312
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=30.58 E-value=11 Score=33.28 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=14.9
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
..++.-.|+.|||||..+-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3466778999999998763
No 313
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=30.56 E-value=11 Score=35.48 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=14.3
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.|+-.|+.|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46888999999999764
No 314
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=30.31 E-value=11 Score=34.28 Aligned_cols=16 Identities=38% Similarity=0.293 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|--.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999764
No 315
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=30.18 E-value=16 Score=33.30 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=11.6
Q ss_pred EEEEcccCCCceE
Q psy7618 118 IFAYGQTGTGKTF 130 (560)
Q Consensus 118 i~aYG~TgSGKTy 130 (560)
++.+|.+|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6889999999984
No 316
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=30.14 E-value=17 Score=36.29 Aligned_cols=16 Identities=44% Similarity=0.586 Sum_probs=13.3
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
-.|+..|+||||||..
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 4578899999999864
No 317
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.01 E-value=12 Score=35.49 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..|
T Consensus 33 ~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 33 FVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999765
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=29.94 E-value=15 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|..|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 4688999999999974
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=29.86 E-value=12 Score=34.09 Aligned_cols=17 Identities=29% Similarity=0.477 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|.-.|+.|||||..+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667899999999753
No 320
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=29.73 E-value=20 Score=35.82 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=13.3
Q ss_pred EEEEEEcccCCCceE
Q psy7618 116 VTIFAYGQTGTGKTF 130 (560)
Q Consensus 116 ~~i~aYG~TgSGKTy 130 (560)
-.|+-.|+||||||.
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999987
No 321
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=29.68 E-value=18 Score=34.69 Aligned_cols=21 Identities=29% Similarity=0.695 Sum_probs=17.2
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 688999999999999999754
No 322
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=29.65 E-value=15 Score=31.94 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.6
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477899999999864
No 323
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=29.36 E-value=12 Score=40.18 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.1
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...++-||++|+|||+++
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346889999999999865
No 324
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=29.35 E-value=13 Score=34.54 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=19.9
Q ss_pred hHHHHHHhc-C--CcEEEEEEcccCCCceEE
Q psy7618 104 RPMVNHMLH-G--YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 104 ~plv~~~l~-G--~N~~i~aYG~TgSGKTyT 131 (560)
-|-+|.++. | ....++-+|.+|+|||.-
T Consensus 16 i~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 16 IPGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp CTTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred cHHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 344566665 3 245788899999999964
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=29.22 E-value=12 Score=33.61 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=13.3
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
.|.-.|.+|||||..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46678999999997643
No 326
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=29.17 E-value=19 Score=42.21 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=0.0
Q ss_pred hhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 98 IYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 98 vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
||.-.-.-.-.-.-++.|-||+.-|.+|||||.+
T Consensus 139 ifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 139 IFAVAEEAYKQMARDERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccch
No 327
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.16 E-value=1.5e+02 Score=23.97 Aligned_cols=43 Identities=12% Similarity=0.235 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7618 506 REKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMKDVAELL 548 (560)
Q Consensus 506 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (560)
..+|+.++.+|.+....++.+..++..|++.+.-...+|+.+-
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~ 91 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFS 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666667788888888887765555555443
No 328
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=29.07 E-value=14 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|.+|||||+.
T Consensus 9 ~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTV 23 (227)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999874
No 329
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=29.04 E-value=15 Score=39.19 Aligned_cols=17 Identities=41% Similarity=0.620 Sum_probs=14.6
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|...|++|||||.++
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 46778899999999886
No 330
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=28.76 E-value=16 Score=38.01 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=15.7
Q ss_pred hcCCcEEEEEEcccCCCceEEe
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++|.| ++..|+||||||...
T Consensus 6 ~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 6 KKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp STTCE--EEECCCTTSSTTTTH
T ss_pred hCCCC--EEEEcCCCCCHHHHH
Confidence 45655 578899999999873
No 331
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.75 E-value=16 Score=33.02 Aligned_cols=16 Identities=38% Similarity=0.615 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578899999999974
No 332
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=28.69 E-value=16 Score=32.61 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3678899999999974
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.68 E-value=16 Score=32.38 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999874
No 334
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=28.55 E-value=17 Score=38.01 Aligned_cols=15 Identities=27% Similarity=0.204 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999987
No 335
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=28.43 E-value=19 Score=36.04 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|+||||||..
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 577899999999864
No 336
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=28.24 E-value=22 Score=32.78 Aligned_cols=21 Identities=14% Similarity=0.040 Sum_probs=14.7
Q ss_pred hcCCcEEEEEEcccCCCceEE
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyT 131 (560)
...--...|-||+.|||||.-
T Consensus 16 ~~~~g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 16 SKTRGQIQVILGPMFSGKSTE 36 (195)
T ss_dssp ---CCEEEEEEECTTSCHHHH
T ss_pred CCCceEEEEEECCCCCcHHHH
Confidence 333445789999999999943
No 337
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=28.20 E-value=12 Score=39.95 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
.-++..|.||||||..+-.
T Consensus 168 pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp CSEEEECCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3468899999999987543
No 338
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=28.14 E-value=19 Score=32.15 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.0
Q ss_pred cEEEEEEcccCCCceEE
Q psy7618 115 NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyT 131 (560)
...|+-.|..|||||+.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 35678899999999974
No 339
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.07 E-value=15 Score=33.51 Aligned_cols=14 Identities=36% Similarity=0.513 Sum_probs=11.9
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999864
No 340
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=28.03 E-value=20 Score=41.68 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.5
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 799999999999999999875
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=27.89 E-value=16 Score=33.73 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588899999999863
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=27.61 E-value=14 Score=34.20 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-.|++|+|||..+
T Consensus 21 ~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 21 TLVLIGASGVGRSHIK 36 (197)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4566899999998753
No 343
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=27.51 E-value=28 Score=39.19 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 789999999999999999864
No 344
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=27.46 E-value=27 Score=35.39 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=25.0
Q ss_pred cchHHHHHHhc--CC--cEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLH--GY--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~--G~--N~~i~aYG~TgSGKTyTm~ 133 (560)
+.-+-++.+|. |. ...+.-||++|||||+.+.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHH
Confidence 46778888887 43 4678999999999997643
No 345
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=27.45 E-value=16 Score=38.32 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=14.3
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45899999999999753
No 346
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.28 E-value=17 Score=42.98 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.4
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 689999999999999999764
No 347
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=27.20 E-value=20 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=14.8
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
..-.|--.|++|||||+++
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3446667899999999875
No 348
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.20 E-value=20 Score=36.02 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=14.9
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..++-||++|+|||+....
T Consensus 124 sviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp EEEEEECSCSSSHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHH
Confidence 4467899999999986543
No 349
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=27.18 E-value=27 Score=35.14 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=24.8
Q ss_pred cchHHHHHHhc--C--CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLH--G--YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~--G--~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.++. | ....+..||+.|||||..+.
T Consensus 44 TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 44 TGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred cCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 46677888887 4 34568899999999998653
No 350
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=27.15 E-value=22 Score=40.01 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=16.0
Q ss_pred HHHHhcCCcEEEEEEcccCCCceE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTy 130 (560)
+..++.+. -.++..|+||||||.
T Consensus 102 i~~~l~~~-~~vii~gpTGSGKTt 124 (773)
T 2xau_A 102 FLKLYQNN-QIMVFVGETGSGKTT 124 (773)
T ss_dssp HHHHHHHC-SEEEEECCTTSSHHH
T ss_pred HHHHHhCC-CeEEEECCCCCCHHH
Confidence 34444443 246788999999998
No 351
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=27.12 E-value=16 Score=33.77 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=11.3
Q ss_pred EEEEcccCCCceE
Q psy7618 118 IFAYGQTGTGKTF 130 (560)
Q Consensus 118 i~aYG~TgSGKTy 130 (560)
|+-.|+.||||++
T Consensus 3 Iil~GpPGsGKgT 15 (206)
T 3sr0_A 3 LVFLGPPGAGKGT 15 (206)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 7788999999974
No 352
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=26.94 E-value=20 Score=32.40 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=14.6
Q ss_pred CcEEEEEEcccCCCceEE
Q psy7618 114 YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyT 131 (560)
....|+-.|..|||||+.
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 344688999999999974
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.90 E-value=16 Score=34.17 Aligned_cols=14 Identities=43% Similarity=0.748 Sum_probs=12.1
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.||..|+.||||++
T Consensus 31 iI~llGpPGsGKgT 44 (217)
T 3umf_A 31 VIFVLGGPGSGKGT 44 (217)
T ss_dssp EEEEECCTTCCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999975
No 354
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=26.66 E-value=17 Score=33.27 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=11.8
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|+.|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999874
No 355
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=26.62 E-value=14 Score=37.50 Aligned_cols=24 Identities=25% Similarity=0.610 Sum_probs=20.7
Q ss_pred HHhcCCcEEEEEEcccCCCceEEe
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 457899999999999999999754
No 356
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=26.29 E-value=1.1e+02 Score=25.86 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy7618 518 QCKMDYEMAEKRADTLKNMAIKQMKDVAELLVDI 551 (560)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (560)
+++...+.++++...||+.-.++.++..+..-.+
T Consensus 8 ~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~L 41 (123)
T 4dzo_A 8 ELKKQVESAELKNQRLKEVFQTKIQEFRKACYTL 41 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667899999999988888877766543
No 357
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=26.18 E-value=22 Score=35.38 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=19.1
Q ss_pred HHHHHhcCC-cEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGY-NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~-N~~i~aYG~TgSGKTyTm 132 (560)
+...+-.|. ...++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 344444554 446889999999999874
No 358
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.15 E-value=26 Score=30.57 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.1
Q ss_pred HHHHhc-CCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLH-GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~-G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++. -....|...|.+|+|||..+
T Consensus 9 ~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 9 FDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 334444 46678999999999999654
No 359
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.07 E-value=18 Score=33.82 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588899999999974
No 360
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.72 E-value=15 Score=36.52 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=14.6
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
..|...|++|+|||+|+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 356777999999999864
No 361
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=25.66 E-value=23 Score=35.77 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+..+-+|+||||||.-+
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45678999999999653
No 362
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=25.56 E-value=18 Score=35.09 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=20.9
Q ss_pred HHHHHHhcCCc--EEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYN--VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N--~~i~aYG~TgSGKTyTm~ 133 (560)
+.++.+.-|.. ..+.-.|++|+|||..+.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHH
Confidence 34666665543 467889999999998753
No 363
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=25.50 E-value=18 Score=32.66 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=12.5
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|..|||||+.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367899999999964
No 364
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=25.41 E-value=18 Score=32.36 Aligned_cols=15 Identities=33% Similarity=0.631 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|..|||||+.
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 367789999999974
No 365
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=25.20 E-value=16 Score=34.25 Aligned_cols=15 Identities=27% Similarity=0.565 Sum_probs=12.1
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..+
T Consensus 33 ~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 33 VSIIGASGSGKSTLL 47 (224)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456699999999765
No 366
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=25.15 E-value=16 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=13.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-++.-.|++|||||+.+
T Consensus 127 e~vaIvGpsGsGKSTLl 143 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLC 143 (305)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45677899999999765
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=25.02 E-value=19 Score=33.21 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 7 KVMISGAPASGKGTQ 21 (222)
T ss_dssp CEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999864
No 368
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.95 E-value=15 Score=33.97 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=18.9
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
..+.|+.|+..|.|||+.-+|
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~G 47 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFG 47 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 357899999999999999988
No 369
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=24.85 E-value=19 Score=31.93 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.3
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999863
No 370
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=24.72 E-value=19 Score=32.43 Aligned_cols=16 Identities=38% Similarity=0.420 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 5 ~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEEcCCCCCHHHH
Confidence 4688899999999875
No 371
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=24.64 E-value=17 Score=32.78 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=13.3
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
.+.-.|.+|||||..+.
T Consensus 8 ~i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLK 24 (174)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45678999999998653
No 372
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=24.49 E-value=27 Score=34.29 Aligned_cols=19 Identities=42% Similarity=0.464 Sum_probs=14.6
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|...|.+|+|||.++.-
T Consensus 99 ~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp EEEEEECSSCSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3566679999999998643
No 373
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=24.36 E-value=22 Score=31.03 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.3
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.|+-.|..|||||+
T Consensus 9 ~i~l~G~~GsGKST 22 (168)
T 1zuh_A 9 HLVLIGFMGSGKSS 22 (168)
T ss_dssp EEEEESCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 57789999999986
No 374
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=24.06 E-value=25 Score=35.41 Aligned_cols=16 Identities=38% Similarity=0.397 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
-.|.-.|+||||||..
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 3688899999999873
No 375
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=24.06 E-value=17 Score=34.45 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 26 ~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 376
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.97 E-value=17 Score=40.61 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.3
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
++.++..|..|||||+||..
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH
Confidence 45677889999999999753
No 377
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=23.82 E-value=24 Score=32.12 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=11.9
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|.-.|++|+|||..
T Consensus 4 IVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 4 IVISGPSGTGKSTL 17 (186)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999864
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=23.69 E-value=21 Score=32.74 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.0
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999863
No 379
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=23.67 E-value=22 Score=32.55 Aligned_cols=16 Identities=31% Similarity=0.349 Sum_probs=13.3
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|.-.|++|||||+.
T Consensus 6 ~~i~i~G~~GsGKSTl 21 (227)
T 1cke_A 6 PVITIDGPSGAGKGTL 21 (227)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577899999999974
No 380
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=23.65 E-value=26 Score=38.73 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.++..|+||||||+.+
T Consensus 233 ~~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEEECCTTSCTTTHH
T ss_pred CeEEEEeCCchhHHHHH
Confidence 34788999999999654
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=23.65 E-value=29 Score=31.74 Aligned_cols=16 Identities=31% Similarity=0.522 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4567899999999764
No 382
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=23.62 E-value=18 Score=34.21 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 33 ~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999864
No 383
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.20 E-value=38 Score=33.34 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+-..+-.|..-.++-||+.|+|||.+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 444444666557888999999998754
No 384
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=23.15 E-value=23 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.5
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|+.|||||+.
T Consensus 4 ~i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999975
No 385
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=23.11 E-value=19 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999875
No 386
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=23.10 E-value=19 Score=35.08 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=12.4
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..+
T Consensus 37 ~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 37 TAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=23.05 E-value=23 Score=32.07 Aligned_cols=15 Identities=40% Similarity=0.308 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|++|||||+.
T Consensus 23 ~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 23 IIGISGVTNSGKTTL 37 (207)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999964
No 388
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=23.04 E-value=23 Score=34.22 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|.+|||||+.
T Consensus 3 ~~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999973
No 389
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=22.95 E-value=19 Score=34.10 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||+.+
T Consensus 34 ~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999865
No 390
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=22.93 E-value=19 Score=37.37 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=13.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..+--.|++|+|||.+|
T Consensus 70 ~~valvG~nGaGKSTLl 86 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35566799999999985
No 391
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=22.87 E-value=31 Score=33.87 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=15.2
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+..-.|--.|++|||||+++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 33456777899999999764
No 392
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=22.76 E-value=29 Score=35.09 Aligned_cols=16 Identities=25% Similarity=0.401 Sum_probs=12.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
..+-+|++|||||.-+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3446999999999654
No 393
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=22.67 E-value=19 Score=34.60 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=12.1
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..+
T Consensus 35 ~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999865
No 394
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=22.61 E-value=19 Score=36.54 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=12.6
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+--.|++|||||.+|
T Consensus 33 ~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 33 LFIIGASGCGKTTLL 47 (359)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCchHHHHH
Confidence 456899999999875
No 395
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=22.59 E-value=18 Score=33.75 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=12.1
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..|
T Consensus 38 ~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999876
No 396
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=22.55 E-value=25 Score=38.37 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=23.9
Q ss_pred ccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
|.+...|.++-+.+ .+.+.+|.+ +++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v----~~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFL----RSSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHH----HHHHHHSSE--EEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCC--EEEECCCCCCHHHHH
Confidence 44556677766553 333446654 688889999999764
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=22.40 E-value=20 Score=34.60 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||+.+
T Consensus 35 ~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999875
No 398
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.28 E-value=20 Score=34.46 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 48 ~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999865
No 399
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=22.26 E-value=20 Score=34.16 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 37 ~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999865
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=22.22 E-value=23 Score=31.51 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999874
No 401
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=22.10 E-value=25 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.6
Q ss_pred CcEEEEEEcccCCCceEE
Q psy7618 114 YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyT 131 (560)
....|+..|+.|||||+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 445789999999999863
No 402
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=22.09 E-value=22 Score=38.67 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+-..+-.|. .++-+|++|+|||..+
T Consensus 53 l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 53 IKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred ccccccCCC--EEEEEeCCCCCHHHHH
Confidence 334444664 5677999999999876
No 403
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=22.07 E-value=20 Score=33.95 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 30 ~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.99 E-value=25 Score=32.32 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999874
No 405
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=21.92 E-value=20 Score=36.33 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+--.|++|||||.+|
T Consensus 32 ~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 32 VALLGPSGCGKTTTL 46 (359)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 456799999999876
No 406
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=21.87 E-value=25 Score=35.09 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=13.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|---|++|||||+++
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5777899999999764
No 407
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=21.79 E-value=29 Score=30.59 Aligned_cols=15 Identities=40% Similarity=0.665 Sum_probs=12.3
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|.-.|..|||||+.
T Consensus 7 ~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 7 TVWLTGLSGAGKTTV 21 (179)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999864
No 408
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=21.76 E-value=21 Score=37.26 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=15.8
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|...|++|+|||++...
T Consensus 100 ~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCEEEECCSSSSTTHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3678899999999998654
No 409
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=21.64 E-value=21 Score=36.61 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=12.7
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+--.|++|||||.+|
T Consensus 32 ~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCchHHHHH
Confidence 456899999999886
No 410
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=21.64 E-value=26 Score=31.66 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=13.6
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 11 ~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CEEEEEESTTSSHHHH
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3588999999999874
No 411
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=21.57 E-value=21 Score=34.45 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 52 i~~liG~NGsGKSTLl 67 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCcHHHHH
Confidence 3456799999999875
No 412
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=21.47 E-value=21 Score=36.17 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||.+|
T Consensus 44 ~~llGpnGsGKSTLL 58 (355)
T 1z47_A 44 VGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455799999999876
No 413
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=21.45 E-value=12 Score=33.64 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-.|.+|||||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999765
No 414
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=21.44 E-value=40 Score=34.66 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.5
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.+|.| ....+.-+|++|||||..+.
T Consensus 162 TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 162 TGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred cCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 356778888854 34578899999999997653
No 415
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=21.33 E-value=29 Score=29.24 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
-|+..|.+|+|||..
T Consensus 5 ~i~v~G~~~~GKssl 19 (166)
T 2ce2_X 5 KLVVVGAGGVGKSAL 19 (166)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999965
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=21.28 E-value=25 Score=32.60 Aligned_cols=15 Identities=33% Similarity=0.718 Sum_probs=12.5
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQ 16 (223)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367889999999874
No 417
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=21.23 E-value=25 Score=31.40 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=17.4
Q ss_pred HhcCCcEEEEEEcccCCCceEEe
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++.-...-|...|.+|+|||..+
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHH
T ss_pred hccCCccEEEEECCCCCCHHHHH
Confidence 34445567899999999999653
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=21.21 E-value=22 Score=33.43 Aligned_cols=15 Identities=40% Similarity=0.576 Sum_probs=12.3
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..|
T Consensus 37 ~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 37 LAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999765
No 419
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=21.20 E-value=21 Score=34.40 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+--.|++|||||..+
T Consensus 40 ~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 445899999999875
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=21.16 E-value=46 Score=29.78 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=20.0
Q ss_pred HHHHHH-hcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHM-LHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~-l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++++.+ +.-...-|...|.+|+|||..+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi 42 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLL 42 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHH
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHH
Confidence 445544 3444567889999999999765
No 421
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=21.13 E-value=30 Score=31.63 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|.-.|..|||||+.
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678899999999973
No 422
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=21.09 E-value=47 Score=33.21 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.5
Q ss_pred chHHHHHHhc----C-C-cEEEEEEcccCCCceEE
Q psy7618 103 VRPMVNHMLH----G-Y-NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 103 ~~plv~~~l~----G-~-N~~i~aYG~TgSGKTyT 131 (560)
..+-++.+|. | + .+.+..||++|||||..
T Consensus 10 Gi~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL 44 (333)
T 3io5_A 10 KIPMMNIALSGEITGGMQSGLLILAGPSKSFKSNF 44 (333)
T ss_dssp SCHHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHH
T ss_pred CCHHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHH
Confidence 5566777776 2 2 24689999999999964
No 423
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=21.09 E-value=37 Score=34.60 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.3
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..+.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46788999999999764
No 424
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=21.07 E-value=22 Score=36.17 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||.+|
T Consensus 31 ~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 31 FMALLGPSGSGKSTLL 46 (362)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3456799999999876
No 425
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.07 E-value=22 Score=34.16 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..|
T Consensus 43 i~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3456799999999875
No 426
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=21.06 E-value=22 Score=36.29 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=12.6
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||.+|
T Consensus 32 ~~llGpnGsGKSTLL 46 (372)
T 1g29_1 32 MILLGPSGCGKTTTL 46 (372)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCcHHHHHH
Confidence 456799999999876
No 427
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=21.03 E-value=22 Score=33.99 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..|
T Consensus 34 ~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999875
No 428
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=21.03 E-value=27 Score=31.83 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=13.2
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|..|||||+.
T Consensus 26 ~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTL 41 (211)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4677789999999874
No 429
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=20.85 E-value=43 Score=33.79 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=24.4
Q ss_pred cchHHHHHHhc--C--CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLH--G--YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~--G--~N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-++.++. | ....++.||..|+|||....
T Consensus 46 TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 46 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp CSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred CCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 46677888886 3 34568889999999998753
No 430
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=20.83 E-value=30 Score=30.50 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.3
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
....|+..|.+|+|||..+
T Consensus 47 ~~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4457999999999999653
No 431
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=20.67 E-value=31 Score=31.44 Aligned_cols=18 Identities=33% Similarity=0.432 Sum_probs=14.2
Q ss_pred CcEEEEEEcccCCCceEE
Q psy7618 114 YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyT 131 (560)
....|.-.|..|||||+.
T Consensus 11 ~~~iIgltG~~GSGKSTv 28 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTV 28 (192)
T ss_dssp CEEEEEEECSTTSSHHHH
T ss_pred cceEEEEECCCCCCHHHH
Confidence 345678889999999854
No 432
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=20.60 E-value=31 Score=29.12 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+..|.+|+|||..+
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678899999999643
No 433
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=20.49 E-value=23 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 48 ~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLS 63 (267)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999865
No 434
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=20.48 E-value=23 Score=34.29 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 47 ~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999765
No 435
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=20.36 E-value=23 Score=34.46 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=12.4
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||..+
T Consensus 50 ~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 50 WILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 456799999999875
No 436
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=20.30 E-value=23 Score=33.30 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|---|+.|||||+.+
T Consensus 27 iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999764
No 437
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=20.30 E-value=23 Score=36.12 Aligned_cols=16 Identities=38% Similarity=0.603 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||.+|
T Consensus 39 ~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3456799999999876
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=20.29 E-value=23 Score=33.71 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||+.+
T Consensus 31 ~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLG 46 (250)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999765
No 439
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=20.29 E-value=23 Score=33.81 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||..+
T Consensus 28 ~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3567899999999865
No 440
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=20.21 E-value=23 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.625 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|++|||||+.|
T Consensus 32 ~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLL 47 (263)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999875
No 441
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.01 E-value=29 Score=34.05 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=14.8
Q ss_pred HHhcCCcEEEEEEcccCCCceEEe
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.++.|. ++.-.|++|+|||..+
T Consensus 161 ~~l~G~--i~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 161 DYLEGF--ICILAGPSGVGKSSIL 182 (302)
T ss_dssp HHTTTC--EEEEECSTTSSHHHHH
T ss_pred hhccCc--EEEEECCCCCCHHHHH
Confidence 344454 4455699999998764
Done!