RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7618
(560 letters)
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 235 bits (601), Expect = 9e-73
Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 9/216 (4%)
Query: 277 KSRKTAKKRHKCIVECCYLELYQGKIRDLLNV--SRPTLF---DTKAKLTLPCKGLRSVT 331
+ + +++ V YLE+Y KI DLL+ + L D K + + KGL V
Sbjct: 113 RIEERKERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDPKKGVYV--KGLTEVE 170
Query: 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVD 391
S EE+ + G K+R AST N+ SSRSHAIF +T++ N T ++ KLNLVD
Sbjct: 171 VTSAEEVLELLELGNKNRTVASTNMNEESSRSHAIFTITVEQRNRDTDGSVKTGKLNLVD 230
Query: 392 LAGSECLQKSN-ATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDS 449
LAGSE K+ A RLKE IN SL A+ VI++ + ++IPYRDS LT+LLQDS
Sbjct: 231 LAGSERASKTGAAGGRRLKEAANINKSLSALGNVINALAENQSSHIPYRDSKLTRLLQDS 290
Query: 450 FGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485
GGN+KTLMIANI P+ S Y+ETL TL +A+RAK I
Sbjct: 291 LGGNSKTLMIANISPSDSNYEETLSTLRFASRAKNI 326
Score = 156 bits (396), Expect = 5e-43
Identities = 75/251 (29%), Positives = 106/251 (42%), Gaps = 63/251 (25%)
Query: 37 RCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQT 96
R RP+N E+ +++ +D T G+ + FTFD V+ +ATQ
Sbjct: 1 RVRPLNEREKSRGSSDIVNVDETDSEDKESVVIT-----NKGREKTFTFDRVFDPEATQE 55
Query: 97 EIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS--QMERGIMQNAFRQIFD--F 152
+YE + +P+V +L GYNVTIFAYGQTG+GKT+TMEG + E GI+ A +F+
Sbjct: 56 FVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGIIPRALEDLFERIE 115
Query: 153 KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQK 212
++KE++ V YLE+Y KI DLL+ S K KL I G +
Sbjct: 116 ERKERKWSFSVRVSYLEIYNEKIYDLLSPSSK-----KKKLRIRE-DPKKGVYV------ 163
Query: 213 EKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCR 272
KGL V S EE+
Sbjct: 164 ------------------------------------------KGLTEVEVTSAEEVLELL 181
Query: 273 KKGYKSRKTAK 283
+ G K+R A
Sbjct: 182 ELGNKNRTVAS 192
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 232 bits (594), Expect = 1e-71
Identities = 106/224 (47%), Positives = 142/224 (63%), Gaps = 10/224 (4%)
Query: 276 YKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTC 332
++ ++ + V+ YLE+Y KIRDLLN S L D K + KGL ++
Sbjct: 115 FEKIDKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIREDEKGGVY--VKGLTEISV 172
Query: 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIHSKLNLV 390
S EE+ N +KG K+R A+T N+ SSRSHA+F +T+ K+ NS +G SKLNLV
Sbjct: 173 SSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGSGK-ASKLNLV 231
Query: 391 DLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVA--GKTYIPYRDSLLTQLLQD 448
DLAGSE +K+ A RLKE IN SL A+ VI++ +IPYRDS LT+LLQD
Sbjct: 232 DLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHSKSRHIPYRDSKLTRLLQD 291
Query: 449 SFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
S GGN+KTLMIAN+ P++S +ETL TL +A+RAK+IKN P +N
Sbjct: 292 SLGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
Score = 171 bits (435), Expect = 2e-48
Identities = 76/253 (30%), Positives = 115/253 (45%), Gaps = 62/253 (24%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVR RP+N E+ +V+ + P+ ++FTFD V+
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGK-----TLTVRSPKNRQGEKKFTFDKVFD 55
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
A+Q +++E + P+V+ +L GYN TIFAYGQTG+GKT+TM G+ GI+ A + +F
Sbjct: 56 ATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLF 115
Query: 151 D-FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDF 209
+ ++E+ + V+ YLE+Y KIRDLLN S L
Sbjct: 116 EKIDKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKL----------------------- 152
Query: 210 KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 269
+IR+ D K + KGL ++ S EE+
Sbjct: 153 ---------------------EIRE----------DEKGGVY--VKGLTEISVSSFEEVY 179
Query: 270 NCRKKGYKSRKTA 282
N +KG K+R A
Sbjct: 180 NLLEKGNKNRTVA 192
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 216 bits (553), Expect = 8e-66
Identities = 97/200 (48%), Positives = 127/200 (63%), Gaps = 6/200 (3%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTL---FDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346
V YLE+Y K+ DLL+ P+ K + KGL V S E+ + +KG
Sbjct: 129 VSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGL 188
Query: 347 KSRKTASTYFNDYSSRSHAIFIVTL-KVLNSKTGKALIHSKLNLVDLAGSECLQKSNATD 405
K+R TAST N+ SSRSHAIF + + + + G+++ SKLNLVDLAGSE +K+ A
Sbjct: 189 KNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEG 248
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIG 463
RLKE IN SL A+ VIS+ +G+ +IPYRDS LT+LLQDS GGN+KTLMIANI
Sbjct: 249 DRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANIS 308
Query: 464 PAASTYKETLVTLEYANRAK 483
P++ Y ETL TL +A+RAK
Sbjct: 309 PSSENYDETLSTLRFASRAK 328
Score = 151 bits (383), Expect = 3e-41
Identities = 67/185 (36%), Positives = 98/185 (52%), Gaps = 14/185 (7%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVR RP+N E K+ E+ I +D K + K + + FTFD V+
Sbjct: 1 NIRVVVRIRPLNGRESKSE-ESCITVDDNK-----TVTLTPPKDGRKAGPKSFTFDHVFD 54
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
+TQ ++YE + +P+V +L GYN TIFAYGQTG+GKT+TM GS + GI+ A +F
Sbjct: 55 PNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLF 114
Query: 151 DF--KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFD 208
+ ++KEK V YLE+Y K+ DLL+ P L++ G +
Sbjct: 115 NLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPP-----SKPLSL-REDPKGGVYVKG 168
Query: 209 FKQKE 213
+ E
Sbjct: 169 LTEVE 173
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 205 bits (523), Expect = 2e-61
Identities = 100/209 (47%), Positives = 124/209 (59%), Gaps = 19/209 (9%)
Query: 289 IVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP--------CKGLRSVTCQSVEEIEN 340
+V YLE+Y ++RDLL D K KL L K L ++ EE++
Sbjct: 132 LVRVSYLEIYNEEVRDLLGK------DQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDK 185
Query: 341 CRKKGYKSRKTASTYFNDYSSRSHAIFIVTLK---VLNSKTGKALIHSKLNLVDLAGSEC 397
G K+R +T N+ SSRSH+IF +T++ + KLNLVDLAGSE
Sbjct: 186 LMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRV-GKLNLVDLAGSER 244
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
K+ AT RLKE +INLSL A+ VIS+ V GK T+IPYRDS LT+LLQDS GGN+KT
Sbjct: 245 QSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKT 304
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKI 485
+M ANIGPA Y ETL TL YANRAK I
Sbjct: 305 VMCANIGPADYNYDETLSTLRYANRAKNI 333
Score = 166 bits (421), Expect = 1e-46
Identities = 71/171 (41%), Positives = 99/171 (57%), Gaps = 17/171 (9%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGK--ARRFTFDA 87
EN+KVVVRCRP+N E+ ++ +D + +++ P+ K + FTFDA
Sbjct: 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVH------NPKADAKEPPKVFTFDA 54
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG---SQMERGIMQN 144
VY +TQ ++Y + RP+V+ +L GYN TIFAYGQTGTGKTFTMEG RGI+ N
Sbjct: 55 VYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPN 114
Query: 145 AFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNI 195
+F IF K + + +V YLE+Y ++RDLL D K KL +
Sbjct: 115 SFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGK------DQKKKLEL 159
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 204 bits (522), Expect = 7e-61
Identities = 96/211 (45%), Positives = 133/211 (63%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLL----NVSRPTLF--DTKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ YLELY ++ DLL ++++P DT K + +GL +T + E +
Sbjct: 140 VKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLE 199
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKV-LNSKTGKALIH-SKLNLVDLAGSECLQKS 401
KG RKTA+T ND SSRSH+IF +T+ + + +G+ L+ KLNLVDLAGSE + +S
Sbjct: 200 KGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRS 259
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A + R +E IN SLL + +VI++ V +IPYR+S LT+LLQDS GG KT +IA
Sbjct: 260 GAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT 319
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK IKN P +N
Sbjct: 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVN 350
Score = 144 bits (365), Expect = 2e-38
Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 21/179 (11%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+ NI+VVVRCRP N ERK V+++ + K + + + +TFD V
Sbjct: 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKV 55
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG---SQMER------ 139
+G +A Q E+Y V P+++ +L GYN TIFAYGQTGTGKT+TMEG
Sbjct: 56 FGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSP 115
Query: 140 --GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIY 196
GI+ A Q+F+ K + + + V+ YLELY ++ DLL+ D L I+
Sbjct: 116 HAGIIPRALYQLFE-KLESQNTEYSVKVSYLELYNEELFDLLSSES----DLNKPLRIF 169
Score = 36.9 bits (86), Expect = 0.021
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 220 VECCYLELYQGKIRDLL----NVSRPTLF--DTKAKLTLPCKGLRSVTCQSVEEIENCRK 273
V+ YLELY ++ DLL ++++P DT K + +GL +T + E +
Sbjct: 140 VKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLE 199
Query: 274 KGYKSRKTA 282
KG RKTA
Sbjct: 200 KGSAKRKTA 208
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 203 bits (519), Expect = 9e-61
Identities = 90/216 (41%), Positives = 124/216 (57%), Gaps = 9/216 (4%)
Query: 278 SRKTAKKRHKCIVECCYLELYQGKIRDLLN---VSRPTL---FDTKAKLTLPCKGLRSVT 331
+ + +K + LE+Y IRDLL + L D+K + + L V
Sbjct: 116 AEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVT--NLTEVP 173
Query: 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVD 391
S EE+ G K+R AST N++SSRSHA+F + ++ N +TG+ KLNLVD
Sbjct: 174 VSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQ-TRGKLNLVD 232
Query: 392 LAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFG 451
LAGSE L+KS AT RLKE IN SL A+ VIS+ + +++PYR+S LT LLQDS G
Sbjct: 233 LAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLG 292
Query: 452 GNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKN 487
GN+KTLM NI P S ETL +L +A+R + ++
Sbjct: 293 GNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328
Score = 135 bits (342), Expect = 2e-35
Identities = 65/179 (36%), Positives = 87/179 (48%), Gaps = 18/179 (10%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDT-TKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
NI+V R RP+ P +VI + + T GK + F+FD V+
Sbjct: 3 NIRVFCRVRPLL-PSESTEYSSVISFPDEDGGTIELSKGT--------GKKKSFSFDRVF 53
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
A+Q +++E V P+V L GYNV IFAYGQTG+GKT+TMEG GI+ A Q+
Sbjct: 54 DPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQL 112
Query: 150 FDFKQ--KEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQI 206
F+ + KEK + LE+Y IRDLL T K KL I H T +
Sbjct: 113 FNTAEELKEKGWSYTITASMLEIYNETIRDLLA----TKPAPKKKLEIKHD-SKGETYV 166
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 202 bits (517), Expect = 2e-60
Identities = 99/222 (44%), Positives = 131/222 (59%), Gaps = 20/222 (9%)
Query: 283 KKRHKCIVECCYLELYQGKIRDLLNVSRPTLF------DTKAKLTLPCKGLRSVTCQSVE 336
K ++ +LELY ++RDLL+ S D+K + + GL VT S +
Sbjct: 122 KDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIV--GLTEVTVNSAQ 179
Query: 337 EIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLK--------VLNSKTGK-ALIHSKL 387
E+ +C ++G SR TAST N SSRSHAIF +TL+ S K + + SK
Sbjct: 180 EVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKF 239
Query: 388 NLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVIS---STVAGKTYIPYRDSLLTQ 444
+ VDLAGSE L+K+ AT RLKE IN LLA+ VIS +++PYRDS LT+
Sbjct: 240 HFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTR 299
Query: 445 LLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIK 486
LLQDS GGN+ TLMIA + PA S ++ETL TL+YANRA+ IK
Sbjct: 300 LLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341
Score = 128 bits (324), Expect = 6e-33
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 23/163 (14%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
++V VR RP+ E ++ + C+S+ ++ G + FTFD V+
Sbjct: 3 VRVAVRVRPLLPKE---------LLEGCQVCVSVVPGEPQV---TVGTDKSFTFDYVFDP 50
Query: 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG--------SQMERGIMQ 143
+Q E+Y V P+V+ + GYN T+ AYGQTG+GKT+TM ++ GI+
Sbjct: 51 STSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEV--GIIP 108
Query: 144 NAFRQIFDFK-QKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 185
A + IF +K+ ++ +LELY ++RDLL+ S
Sbjct: 109 RAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSE 151
Score = 43.4 bits (103), Expect = 2e-04
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 206 IFDFK-QKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLF------DTKAKLTLPCKGLR 258
IF +K+ ++ +LELY ++RDLL+ S D+K + + GL
Sbjct: 114 IFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIV--GLT 171
Query: 259 SVTCQSVEEIENCRKKGYKSRKTA 282
VT S +E+ +C ++G SR TA
Sbjct: 172 EVTVNSAQEVMSCLEQGSLSRTTA 195
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 200 bits (510), Expect = 4e-59
Identities = 100/227 (44%), Positives = 125/227 (55%), Gaps = 27/227 (11%)
Query: 287 KCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL-----P-----CKGLRSVTCQSVE 336
VE Y+E+Y K+RDLLN K K L P + L V S E
Sbjct: 136 SYEVEVSYMEIYNEKVRDLLNP------KKKNKGNLKVREHPVLGPYVEDLSKVAVTSYE 189
Query: 337 EIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT---GKALIHSKLNLVDLA 393
+I+N ++G KSR TAST ND SSRSHA+F + L SK++LVDLA
Sbjct: 190 DIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLA 249
Query: 394 GSECLQKSNATDIRLKECCEINLSLLAVNKVIS------STVAGK--TYIPYRDSLLTQL 445
GSE + A RLKE IN SL + KVIS S + K ++IPYRDS+LT L
Sbjct: 250 GSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWL 309
Query: 446 LQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
L+++ GGN+KT MIA I PA Y+ETL TL YA+RAKKI N +N
Sbjct: 310 LKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356
Score = 119 bits (300), Expect = 1e-29
Identities = 56/167 (33%), Positives = 90/167 (53%), Gaps = 19/167 (11%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKID---TTKKCLSIQYSTDRLKPRQPGKARRFTFD 86
N+KV VR RP N E+ + ++++ TT K +T + K + F+FD
Sbjct: 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRK-------KPKSFSFD 53
Query: 87 AVY-------GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER 139
Y A+Q +++E+ R +++H GYNV +FAYGQTG+GK++TM G + E+
Sbjct: 54 HSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEK 113
Query: 140 GIMQNAFRQIF--DFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRP 184
GI+ ++F +KE+ VE Y+E+Y K+RDLLN +
Sbjct: 114 GIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 182 bits (464), Expect = 1e-52
Identities = 92/218 (42%), Positives = 121/218 (55%), Gaps = 10/218 (4%)
Query: 276 YKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTC 332
+ + K + V YLE+Y IRDLL+ S L D + + GL
Sbjct: 123 FDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVA--GLTEHQP 180
Query: 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH--SKLNLV 390
+S EEI KG ++R T N SSRSHA+ +T++ + KL+L+
Sbjct: 181 KSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLI 240
Query: 391 DLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQ 447
DLAGSE +N RLKE IN SLLA+ I++ V GK +IPYRDS LT+LL+
Sbjct: 241 DLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLK 300
Query: 448 DSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485
DS GGN KT+MIANI P++S Y+ET TL+YANRAK I
Sbjct: 301 DSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338
Score = 137 bits (346), Expect = 5e-36
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 10/157 (6%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCL------SIQYSTDRLKPRQPGKARRFT 84
++ V VR RP N E++ V+K+ + L + R K +++
Sbjct: 1 SLTVAVRVRPFNEKEKQEGTRRVVKV-VDDRMLVFDPKDEEDAFRNLRARR--NKELKYS 57
Query: 85 FDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQN 144
FD V+ +TQ E+YEN+ +P+V+ +L+GYN T+FAYG TG GKT TM G+ + G+M
Sbjct: 58 FDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVL 117
Query: 145 AFRQIFDFKQKEKRHK-CIVECCYLELYQGKIRDLLN 180
+ +FD ++ K K V YLE+Y IRDLL+
Sbjct: 118 TMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLS 154
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 179 bits (455), Expect = 2e-51
Identities = 91/198 (45%), Positives = 120/198 (60%), Gaps = 3/198 (1%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
V+ YLE+Y KIRDLL+VS+ L + K KGL S EE+ +G +
Sbjct: 129 VKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSN 188
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R AST N+ SSRSH+IF++TLK N +TG KL LVDLAGSE + K+ A L
Sbjct: 189 RAVASTNMNEESSRSHSIFLITLKQENVETGSKKR-GKLFLVDLAGSEKVSKTGAEGQTL 247
Query: 409 KECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAS 467
+E +IN SL A+ VI++ GK T+IPYRDS LT++LQDS GGN++T +I P++
Sbjct: 248 EEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSY 307
Query: 468 TYKETLVTLEYANRAKKI 485
ETL TL + RAK I
Sbjct: 308 NESETLSTLRFGARAKTI 325
Score = 130 bits (330), Expect = 6e-34
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 14/162 (8%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+ NIKVV R RP+N E ++++K +SI S D + F+FD V
Sbjct: 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGED-TVSIAGSDD---------GKTFSFDRV 50
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS---QMERGIMQNA 145
+ TQ ++Y +P+V+ +L+GYN TIFAYGQTG+GKT+TMEG +GI+
Sbjct: 51 FPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRI 110
Query: 146 FRQIFDFKQKEKRH-KCIVECCYLELYQGKIRDLLNVSRPTL 186
IF+ + + V+ YLE+Y KIRDLL+VS+ L
Sbjct: 111 VHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNL 152
Score = 38.8 bits (91), Expect = 0.006
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 220 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 278
V+ YLE+Y KIRDLL+VS+ L + K KGL S EE+ +G +
Sbjct: 129 VKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSN 188
Query: 279 RKTAK 283
R A
Sbjct: 189 RAVAS 193
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 168 bits (427), Expect = 1e-47
Identities = 84/198 (42%), Positives = 113/198 (57%), Gaps = 8/198 (4%)
Query: 294 YLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKT 351
YLE+Y KI+DLL+ S L + K + GL S E + +G K+R
Sbjct: 126 YLEIYNEKIKDLLSPSPQELRIREDPNKGVV-VAGLTEEIVTSPEHLLQLIARGEKNRHV 184
Query: 352 ASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
T FN+ SSRSH IF +T++ + S LNL+DLAGSE ++ A + R K
Sbjct: 185 GETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTGAGE-RRK 243
Query: 410 ECCEINLSLLAVNKVISSTVAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAS 467
E IN SLL + VIS GK +IPYRDS LT++LQ S GNA+T +I I PA+S
Sbjct: 244 EGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASS 303
Query: 468 TYKETLVTLEYANRAKKI 485
+ETL TL++A+RAKK+
Sbjct: 304 HVEETLNTLKFASRAKKV 321
Score = 126 bits (319), Expect = 2e-32
Identities = 63/157 (40%), Positives = 86/157 (54%), Gaps = 13/157 (8%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVI-KIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
IKV VR RP+N R++ E V ID + + + + + FTFD V+
Sbjct: 1 KIKVSVRVRPLN--PRESDNEQVAWSID----------NDNTISLEESTPGQSFTFDRVF 48
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
G ++T E+YE +P+V L GYN TIFAYGQT +GKTFTM G + E GI+ A R I
Sbjct: 49 GGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDI 108
Query: 150 FDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
F Q + ++ YLE+Y KI+DLL+ S L
Sbjct: 109 FQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQEL 145
Score = 35.4 bits (82), Expect = 0.059
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 205 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTC 262
IF Q + ++ YLE+Y KI+DLL+ S L + K + GL
Sbjct: 107 DIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVV-VAGLTEEIV 165
Query: 263 QSVEEIENCRKKGYKSRKTA 282
S E + +G K+R
Sbjct: 166 TSPEHLLQLIARGEKNRHVG 185
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 160 bits (406), Expect = 2e-44
Identities = 85/200 (42%), Positives = 114/200 (57%), Gaps = 9/200 (4%)
Query: 287 KCIVECCYLELYQGKIRDLLNVSRP--TLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKK 344
V + E+Y GK+ DLLN + L D K + + GL SV+E+ +
Sbjct: 129 DLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDGKGNVQI--VGLTEKPVTSVDELLELIES 186
Query: 345 GYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNAT 404
G R T ST ND SSRSHAI + LK N K K KL+ +DLAGSE ++
Sbjct: 187 GNSLRTTGSTGANDQSSRSHAILQIILK--NKKLNKL--LGKLSFIDLAGSERGADTSEH 242
Query: 405 D-IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIG 463
D KE EIN SLLA+ + I + + K ++P+R S LTQ+L+DSF GN+KT+MIA I
Sbjct: 243 DRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATIS 302
Query: 464 PAASTYKETLVTLEYANRAK 483
P+AS+ + TL TL YA+R K
Sbjct: 303 PSASSCEHTLNTLRYADRVK 322
Score = 108 bits (271), Expect = 6e-26
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
I V VR RP+N E +V+ ++ +++ ++ + + F FD V+
Sbjct: 1 MKITVAVRKRPLNDKELSKGETDVVSCES-NPTVTVHEPKTKVDLTKYIEKHTFRFDYVF 59
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
T E+Y ++V+P++ H+ G T FAYGQTG+GKT+TM G + + G+ A R I
Sbjct: 60 DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDI 119
Query: 150 FDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
F + V + E+Y GK+ DLLN
Sbjct: 120 FRLLAQPND-DLGVTVSFFEIYGGKLFDLLN 149
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 150 bits (380), Expect = 5e-41
Identities = 79/197 (40%), Positives = 111/197 (56%), Gaps = 8/197 (4%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346
Y E+Y K+ DLL ++ L D + + GL S +S+ E E
Sbjct: 128 FSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIV--GLTSKPIKSMAEFEEAYIPAS 185
Query: 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDI 406
K+R A+T ND SSRSHA+ + KV + KLNL+DLAGSE +++ I
Sbjct: 186 KNRTVAATKLNDNSSRSHAVLRI--KV-TQPASNIQLEGKLNLIDLAGSEDNRRTGNEGI 242
Query: 407 RLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAA 466
RLKE IN SL ++KV+ + G IPYR+S LT+LLQDS GG ++ +M+ANI P
Sbjct: 243 RLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPER 302
Query: 467 STYKETLVTLEYANRAK 483
S Y++TL TL +A+R+K
Sbjct: 303 SFYQDTLSTLNFASRSK 319
Score = 119 bits (299), Expect = 8e-30
Identities = 51/151 (33%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
N++VVVR RP + + V ID+ + + PR G+ +++ FDA YG
Sbjct: 1 NVRVVVRVRPF-LDCEEDSSSCVRGIDSDQGQAKSVEIEN---PRNRGETKKYQFDAFYG 56
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
+ TQ +I+ V+P+V H+L G N T+FAYG TG GKT TM G E G++ +
Sbjct: 57 TECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLL 116
Query: 151 DFKQKEKRHKCIVECCYLELYQGKIRDLLNV 181
+K+ Y E+Y K+ DLL
Sbjct: 117 RMGRKQAW-TGAFSMSYYEIYNEKVYDLLEP 146
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 150 bits (380), Expect = 9e-41
Identities = 85/215 (39%), Positives = 119/215 (55%), Gaps = 6/215 (2%)
Query: 277 KSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF-DTKAKLTLPCKGLRSVTCQSV 335
+ + K + +C +LE+Y +I DLL+ + L K + + L S
Sbjct: 123 REEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSY 182
Query: 336 EEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAG 394
E++ KG +RK A+T N SSRSHA+F T++ K I S+LNLVDLAG
Sbjct: 183 EDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAG 242
Query: 395 SECLQKSNATDIRLKECCEINLSLLAVNKVISSTV----AGKTYIPYRDSLLTQLLQDSF 450
SE + A +RLKE IN SL + VI + V + ++PYRDS LT LL+DS
Sbjct: 243 SERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSL 302
Query: 451 GGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485
GGNAKT +IAN+ P++ + ETL TL++A RAK I
Sbjct: 303 GGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337
Score = 98.3 bits (245), Expect = 2e-22
Identities = 55/172 (31%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKID--TTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+KVVVR RP N E +K T S P R FTFD V
Sbjct: 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS--------HP-----PRMFTFDHV 48
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG--------SQMERG 140
Q +++++ +P+V L GYN +IFAYGQTG+GKT+TM G +G
Sbjct: 49 ADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQG 108
Query: 141 IMQNAFRQIFDFKQKEK-----RHKCIVECCYLELYQGKIRDLLNVSRPTLF 187
++ F +F Q+E+ K + +C +LE+Y +I DLL+ + L
Sbjct: 109 VIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLK 160
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 150 bits (380), Expect = 4e-39
Identities = 92/206 (44%), Positives = 125/206 (60%), Gaps = 4/206 (1%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS 348
V YLE+Y KI DLL+ + +L + L + GL S EEI + +KG K+
Sbjct: 139 VSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKN 198
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R TAST ND SSRSH+IF + L N +G SKL+LVDLAGSE ++ RL
Sbjct: 199 RTTASTEINDESSRSHSIFQIELASKNKVSGT-SETSKLSLVDLAGSERAARTGNRGTRL 257
Query: 409 KECCEINLSLLAVNKVISSTVAGKT--YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAA 466
KE IN SLL + VI++ K +IPYR+S LT+LLQDS GGN T +I I P++
Sbjct: 258 KEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSS 317
Query: 467 STYKETLVTLEYANRAKKIKNAPNIN 492
++++ET+ TL++A+RAK IKN +N
Sbjct: 318 NSFEETINTLKFASRAKSIKNKIQVN 343
Score = 105 bits (263), Expect = 8e-24
Identities = 52/163 (31%), Positives = 80/163 (49%), Gaps = 18/163 (11%)
Query: 18 TKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQP 77
L +IK +R P + ER + + K
Sbjct: 10 KSRLSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEK----------------- 52
Query: 78 GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM 137
K + FD V+G ATQ ++YE +++P+++ +L GYN T+FAYGQTG+GKT+TM G++
Sbjct: 53 SKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE 112
Query: 138 ERGIMQNAFRQIFDFKQKEKRHKCI-VECCYLELYQGKIRDLL 179
E GI+ + +++F + K V YLE+Y KI DLL
Sbjct: 113 EPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLL 155
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 132 bits (334), Expect = 2e-34
Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 11/200 (5%)
Query: 294 YLELYQGKIRDLLNVSRPTLFDTKAKLTLP--------CKGLRSVTCQSVEEIENCRKKG 345
YLE+Y ++ DLL + L A +T+ KGL + + EE N G
Sbjct: 136 YLEIYNEQLYDLLGDTPEALESLPA-VTILEDSEQNIHVKGLSLHSATTEEEALNLLFLG 194
Query: 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKA-LIHSKLNLVDLAGSECLQKSNAT 404
+R A T N SSRSH IF + L+ + + G + SKLNLVDLAGSE + K+ +
Sbjct: 195 ETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVS 254
Query: 405 DIRLKECCEINLSLLAVNKVISS-TVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIG 463
LKE IN SL + +VI++ + +T++PYR+S LT +L+DS GGN KT+M+A I
Sbjct: 255 GQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314
Query: 464 PAASTYKETLVTLEYANRAK 483
S ETL TL +A R
Sbjct: 315 VEPSNLDETLSTLRFAQRVA 334
Score = 105 bits (264), Expect = 5e-25
Identities = 59/165 (35%), Positives = 78/165 (47%), Gaps = 11/165 (6%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPG-KARRFTFDAVY 89
I+V VR RP K + IK+ K +S D + F FD V+
Sbjct: 2 IQVFVRVRP---TPTKQG--SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVF 56
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG---SQMERGIMQNAF 146
A+Q E+YE +P+V+ L GYN TIFAYGQTG GKTFTM G S +RG++ A
Sbjct: 57 H-NASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRAL 115
Query: 147 RQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKA 191
Q+F V YLE+Y ++ DLL + L A
Sbjct: 116 EQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPA 160
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 125 bits (316), Expect = 2e-33
Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 2/134 (1%)
Query: 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG--KALIHSKLNLV 390
++V ++ + KG +R TA+T N++SSRSH++F + N+ + K+NLV
Sbjct: 53 RTVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLV 112
Query: 391 DLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF 450
DLAGSE + S A RL E IN SL + VIS+ +++PYR+S LT+LLQDS
Sbjct: 113 DLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSL 172
Query: 451 GGNAKTLMIANIGP 464
GGN++TLM+A I P
Sbjct: 173 GGNSRTLMVACISP 186
Score = 69.5 bits (170), Expect = 1e-13
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 101 NSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFD 151
V P++ L GYNV IFAYGQTG+GKT+TMEG + GI+ + D
Sbjct: 10 RDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVID 60
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 125 bits (316), Expect = 8e-32
Identities = 79/215 (36%), Positives = 109/215 (50%), Gaps = 30/215 (13%)
Query: 294 YLELYQGKIRDLLNVSRPTLFDTKAKLTLP----------CKGLRSVTCQSVEEIENCRK 343
Y+E+Y I DLL S TK + +L GL V S EE K
Sbjct: 136 YVEIYNNYIYDLLEDSP---SSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFK 192
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK---TGKALIH------SKLNLVDLAG 394
+G K+R+ A T N SSRSH++F T+K++ + G S+L+LVDLAG
Sbjct: 193 RGQKNRRVAGTKLNRESSRSHSVF--TIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAG 250
Query: 395 SECLQKSNATDIRLKECCEINLSLLAVNKVIS----STVAGKT--YIPYRDSLLTQLLQD 448
SE ++ T RLKE IN SL+ + K I + ++G T +PYRDS LT L Q+
Sbjct: 251 SERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQN 310
Query: 449 SFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483
F G K MI N+ P AS Y ETL ++++ A+
Sbjct: 311 YFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345
Score = 95.1 bits (237), Expect = 3e-21
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 9/176 (5%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIK-IDTTKKCLSIQYSTDRLKPRQPG--KARRFTFD 86
+ +KV +R RP++ E ++ E I+ I++T L + K + G K +F+F
Sbjct: 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFS 60
Query: 87 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAF 146
V+G TQ E +E + P+V +L G N +F YG T +GKT+TM+GS + GI+ +
Sbjct: 61 KVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSL 120
Query: 147 RQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSN 202
IF+ V Y+E+Y I DLL S P+ + L + N
Sbjct: 121 DVIFNSIG-----GYSVFVSYVEIYNNYIYDLLEDS-PSSTKKRQSLRLREDHNGN 170
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 128 bits (323), Expect = 5e-31
Identities = 85/229 (37%), Positives = 126/229 (55%), Gaps = 13/229 (5%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTCQSVE 336
K A ++ K C +LE+Y +I DLL+ S+ L D K+ + + + L ++++
Sbjct: 220 KHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYV--ENLTEEYVKTMK 277
Query: 337 EIENCRKKGYKSRKTASTYFNDYSSRSHAIF--IVTLKVLNSKTG-KALIHSKLNLVDLA 393
++ KG +R+T +T N SSRSH++F +V + + G + S++NLVDLA
Sbjct: 278 DVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLA 337
Query: 394 GSECLQKSNATDIRLKECCEINLSLLAVNKVIS-----STVAGKTYIPYRDSLLTQLLQD 448
GSE + + A RLKE IN SL + +I+ S + +IPYRDS LT LLQ+
Sbjct: 338 GSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQE 397
Query: 449 SFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYRED 497
S GGNAK M+ I P+ S ET TL +A RAK IKN +N +D
Sbjct: 398 SLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQD 446
Score = 87.3 bits (216), Expect = 7e-18
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 33/174 (18%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
D +KV+VR +P+N K +I + L+I T FTFD++
Sbjct: 97 DSGVKVIVRMKPLN----KGEEGEMIVQKMSNDSLTINGQT-------------FTFDSI 139
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG----------SQME 138
++TQ +I++ P+V + L G+N ++FAYGQTG+GKT+TM G S +
Sbjct: 140 ADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQ 199
Query: 139 RGIMQNAFRQIFD------FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+G+ F ++F K +++ K C +LE+Y +I DLL+ S+ L
Sbjct: 200 QGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNL 253
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 33.4 bits (77), Expect = 0.27
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 95 QTEIYENSVRPMVNHMLHGYN-VTIFAYGQTGTGKT 129
Q E ++RP+ L G +F YG+TGTGKT
Sbjct: 23 QIEELAKALRPI----LRGSRPSNVFIYGKTGTGKT 54
>gnl|CDD|153364 cd07680, F-BAR_PACSIN1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 1 or Syndapin I is expressed specifically in the
brain and is localized in neurites and synaptic boutons.
It binds the brain-specific proteins dynamin I,
synaptojanin, synapsin I, and neural Wiskott-Aldrich
syndrome protein (nWASP), and functions as a link
between the cytoskeletal machinery and synaptic vesicle
endocytosis. PACSIN 1 interacts with huntingtin and may
be implicated in the neuropathology of Huntington's
disease. It contains an N-terminal F-BAR domain and a
C-terminal SH3 domain. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 258
Score = 31.6 bits (71), Expect = 1.0
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 497 DRCHNE-EKMREKYKKALEDLAQCKMDY-EMAEKRADTLKNMAIKQMKDVAELLVDI 551
D+C + +K +EKY+K L+D+ + Y E E+ + + K++ + E+L+DI
Sbjct: 178 DKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDI 234
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 30.8 bits (71), Expect = 2.3
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 122 GQTGTGKTFTM 132
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring thioredoxin
as an electron donor, phosphoadenosine phosphosulfate
reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS reductase
is related to a group of plant (TIGR00424) and bacterial
(TIGR02055) enzymes preferring 5'-adenylylsulfate (APS)
over PAPS as a substrate for reduction to sulfite
[Central intermediary metabolism, Sulfur metabolism].
Length = 226
Score = 30.2 bits (68), Expect = 2.6
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 475 TLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALED 515
TL + K +N Y+ D C +E KY K L
Sbjct: 67 TLTLKDELTKKYYQ-TLNLYKYDGCESEADFEAKYGKLLWQ 106
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 30.1 bits (68), Expect = 2.9
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 114 YNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFK 153
N+ I G +G+GK+ + R + + + D K
Sbjct: 2 PNMLIV--GPSGSGKSTLL-KLLALRLLARGGRVIVIDPK 38
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 29.0 bits (65), Expect = 5.2
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132
+ +L G I A TG+GKT
Sbjct: 17 IEALLSGLRDVILA-APTGSGKTLAA 41
>gnl|CDD|233635 TIGR01915, npdG, NADPH-dependent F420 reductase. This model
represents a subset of a parent family described by
pfam03807. Unlike the parent family, members of this
family are found only in species with evidence of
coenzyme F420. All members of this family are believed
to act as NADPH-dependent F420 reductase [Energy
metabolism, Electron transport].
Length = 219
Score = 28.6 bits (64), Expect = 6.3
Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 503 EKMREKYKKALEDLAQCK-------MDYEMAEKRAD 531
EK E KALE+L D A KRAD
Sbjct: 35 EKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRAD 70
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.1 bits (66), Expect = 6.8
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 122 GQTGTGKTFTM 132
G TG+GKTFTM
Sbjct: 39 GVTGSGKTFTM 49
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 29.0 bits (66), Expect = 8.5
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 113 GYNVTIFAYGQTGTGKTFTME 133
GYN IF G+ GTG+T +
Sbjct: 30 GYN--IFVLGEPGTGRTTLVR 48
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 27.9 bits (62), Expect = 9.5
Identities = 12/35 (34%), Positives = 13/35 (37%), Gaps = 6/35 (17%)
Query: 118 IFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDF 152
+ YG GTGKT R I FR F
Sbjct: 22 LLLYGPPGTGKTTLA------RAIANELFRPGAPF 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0693 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,793,670
Number of extensions: 2513744
Number of successful extensions: 2500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2396
Number of HSP's successfully gapped: 87
Length of query: 560
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 458
Effective length of database: 6,413,494
Effective search space: 2937380252
Effective search space used: 2937380252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)