RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7618
(560 letters)
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 272 bits (697), Expect = 1e-86
Identities = 90/244 (36%), Positives = 136/244 (55%), Gaps = 10/244 (4%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTCQSVEE 337
+ + ++ Y E+Y KIRDLL+VS+ L + K ++ KG S E+
Sbjct: 127 YAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPY-VKGATERFVSSPED 185
Query: 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397
+ ++G +R A T N++SSRSH++F++ +K N + K + KL LVDLAGSE
Sbjct: 186 VFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQK-KLSGKLYLVDLAGSEK 244
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
+ K+ A L E IN SL A+ VIS+ G T+IPYRDS LT++LQ+S GGNA+T
Sbjct: 245 VSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNART 304
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALEDL 516
++ PA+ ET TL++ RAK +KN +N E+ E+ + +Y+K E
Sbjct: 305 TIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN---EE--LTAEEWKRRYEKEKEKN 359
Query: 517 AQCK 520
A+ K
Sbjct: 360 ARLK 363
Score = 185 bits (473), Expect = 8e-54
Identities = 58/167 (34%), Positives = 88/167 (52%), Gaps = 15/167 (8%)
Query: 24 NEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRF 83
E +++IKVV R RP+N E KA + V+K + I + + +
Sbjct: 5 REIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG-----------KVY 53
Query: 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS---QMERG 140
FD V+ A+Q ++Y + + +V +L GYN TIFAYGQT +GKT TMEG +++G
Sbjct: 54 LFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQG 113
Query: 141 IMQNAFRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
I+ IF+ E + ++ Y E+Y KIRDLL+VS+ L
Sbjct: 114 IIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNL 160
Score = 59.2 bits (144), Expect = 1e-09
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVT 261
IF+ E + ++ Y E+Y KIRDLL+VS+ L + K ++ KG
Sbjct: 121 DIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPY-VKGATERF 179
Query: 262 CQSVEEIENCRKKGYKSRKTA 282
S E++ ++G +R A
Sbjct: 180 VSSPEDVFEVIEEGKSNRHIA 200
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 267 bits (686), Expect = 2e-85
Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 12/215 (5%)
Query: 278 SRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 337
+ + + V ++E+Y K DLL + + C+ + S +
Sbjct: 140 TARQENNKDAIQVYASFIEIYNEKPFDLLGSTP-----HMPMVAARCQRCTCLPLHSQAD 194
Query: 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397
+ + + G ++R+ T N SSRSHAI + +K HS++N+VDLAGSE
Sbjct: 195 LHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVK-------SKTHHSRMNIVDLAGSEG 247
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTL 457
++++ + +E INL LL++NKV+ S AG T IPYRDS+LT +LQ S +
Sbjct: 248 VRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLT 307
Query: 458 MIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
+A I P ETL TL + AK + +
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
Score = 176 bits (448), Expect = 2e-50
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 21/177 (11%)
Query: 16 RRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPR 75
K E + +++ VR P + +V++ S+
Sbjct: 8 DDDKRRRGMEGAKLSAVRIAVREAPYRQFLGRRE-PSVVQFPPWSDGKSLI--------- 57
Query: 76 QPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS 135
F FD + +Q E+Y+ + P+V+ +L G+ T AYGQTGTGK+++M +
Sbjct: 58 --VDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMT 115
Query: 136 QM------ERGIMQNAFRQIFDF---KQKEKRHKCIVECCYLELYQGKIRDLLNVSR 183
GI+ A IF+ +Q+ + V ++E+Y K DLL +
Sbjct: 116 PPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP 172
Score = 60.7 bits (148), Expect = 4e-10
Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 205 QIFDF---KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 261
IF+ +Q+ + V ++E+Y K DLL + + C+ +
Sbjct: 134 DIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP-----HMPMVAARCQRCTCLP 188
Query: 262 CQSVEEIENCRKKGYKSRKTA 282
S ++ + + G ++R+
Sbjct: 189 LHSQADLHHILELGTRNRRVR 209
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 267 bits (684), Expect = 4e-85
Identities = 101/215 (46%), Positives = 130/215 (60%), Gaps = 3/215 (1%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRP-TLFDTKAKLTLPCKGLRSVTCQSVEEI 338
++ +V YLELY +IRDL+ + L + K + GL + E+
Sbjct: 129 NSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIY-VDGLSMHRVTTAAEL 187
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSEC 397
KG+ +R A+T ND SSRSH+IF+V ++ K +I KLNLVDLAGSE
Sbjct: 188 SALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSER 247
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTL 457
K+ AT L E +INLSL A+ VIS V G T+IPYRDS LT+LLQDS GGN+KTL
Sbjct: 248 QSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTL 307
Query: 458 MIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
M ANI PA++ Y ET+ TL YA+RAK+IKN P IN
Sbjct: 308 MCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
Score = 195 bits (497), Expect = 1e-57
Identities = 61/154 (39%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDA 87
+NIKV+VRCRP+N E + + N+I++D + + Q K R FTFDA
Sbjct: 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDA 62
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFR 147
VY + I++ S +P+++ +L G+N TIFAYGQTG GKT+TM G++ E G + N+F+
Sbjct: 63 VYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFK 122
Query: 148 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLN 180
+FD +V YLELY +IRDL+
Sbjct: 123 HLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK 156
Score = 54.9 bits (133), Expect = 3e-08
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRP-TLFDTKAKLTLPCKGLRSVTC 262
+FD +V YLELY +IRDL+ + L + K + GL
Sbjct: 123 HLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTRGIY-VDGLSMHRV 181
Query: 263 QSVEEIENCRKKGYKSRKTA 282
+ E+ KG+ +R A
Sbjct: 182 TTAAELSALMDKGFANRHVA 201
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 267 bits (685), Expect = 5e-85
Identities = 91/226 (40%), Positives = 127/226 (56%), Gaps = 16/226 (7%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP----------CKGLR 328
K + V+ LE+Y ++ DLLN S D +L + KGL
Sbjct: 136 EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSS----DVSERLQMFDDPRNKRGVIIKGLE 191
Query: 329 SVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIHSK 386
+T + +E+ +KG R TA+T N YSSRSH++F VT+ K + + K
Sbjct: 192 EITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGK 251
Query: 387 LNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLL 446
LNLVDLAGSE + +S A D R +E IN SLL + +VI++ V ++PYR+S LT++L
Sbjct: 252 LNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRIL 311
Query: 447 QDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
QDS GG +T +IA I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 312 QDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
Score = 200 bits (510), Expect = 2e-59
Identities = 76/271 (28%), Positives = 115/271 (42%), Gaps = 69/271 (25%)
Query: 24 NEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRF 83
+ + +NI+VVVRCRP N+ ERKA ++++ D +K +S++ + +
Sbjct: 2 KKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTY 57
Query: 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG--------- 134
TFD V+G Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG
Sbjct: 58 TFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYT 117
Query: 135 --SQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAK 192
GI+ QIF+ + V+ LE+Y ++ DLLN S D +
Sbjct: 118 WEEDPLAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSS----DVSER 172
Query: 193 LNIY-HGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLT 251
L ++ R G I
Sbjct: 173 LQMFDDPRNKRGVII--------------------------------------------- 187
Query: 252 LPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
KGL +T + +E+ +KG R TA
Sbjct: 188 ---KGLEEITVHNKDEVYQILEKGAAKRTTA 215
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 268 bits (687), Expect = 5e-85
Identities = 79/247 (31%), Positives = 119/247 (48%), Gaps = 8/247 (3%)
Query: 277 KSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTCQ 333
+ + V YLE+YQ K+ DLL+ + L D + + + GL
Sbjct: 138 REEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILI--PGLSQKPIS 195
Query: 334 SVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLA 393
S + E ++R +T N SSRSHA+ +V + KL L+DLA
Sbjct: 196 SFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLA 255
Query: 394 GSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGN 453
GSE +++ +RLKE IN SL + KV+ + G +PYRDS LT+LLQDS GG+
Sbjct: 256 GSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGS 315
Query: 454 AKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKAL 513
A +++IANI P Y +T+ L +A R+K++ N P N E + + +K L
Sbjct: 316 AHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN---ESLQPHALGPVKLSQKEL 372
Query: 514 EDLAQCK 520
+ K
Sbjct: 373 LGPPEAK 379
Score = 197 bits (504), Expect = 4e-58
Identities = 57/276 (20%), Positives = 91/276 (32%), Gaps = 67/276 (24%)
Query: 11 RHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD 70
H+ + + ++V VR RP A ++ +
Sbjct: 2 HHHHHHSSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIA----- 56
Query: 71 RLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130
R + ++ FDA YG ++TQ +IY SV+P++ H+L G N ++ AYG TG GKT
Sbjct: 57 --NWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
Query: 131 TMEGSQMERGIMQNAFRQIFD----FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
TM GS + G++ A + + + V YLE+YQ K+ DLL+
Sbjct: 115 TMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD------ 168
Query: 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 246
L I +E I+
Sbjct: 169 -PASGDLVI----------------REDCRGNIL-------------------------- 185
Query: 247 KAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
GL S + E ++R
Sbjct: 186 -------IPGLSQKPISSFADFERHFLPASRNRTVG 214
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 264 bits (677), Expect = 6e-84
Identities = 86/235 (36%), Positives = 134/235 (57%), Gaps = 10/235 (4%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTCQSVEE 337
++ + V Y+E+Y +IRDLL L + K + KGL + SV+E
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVY-VKGLLEIYVSSVQE 182
Query: 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397
+ ++G +R A+T N SSRSH+IF++T+ N +TG A +L LVDLAGSE
Sbjct: 183 VYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKS-GQLFLVDLAGSEK 241
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
+ K+ A+ L+E +IN SL A+ VI++ GK +++PYRDS LT++LQ+S GGN++T
Sbjct: 242 VGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRT 301
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKK 511
+I N P++ ETL TL + RAK IKN +N + + ++++ K
Sbjct: 302 TLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN---AE--LSPAELKQMLAK 351
Score = 186 bits (475), Expect = 2e-54
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 15/163 (9%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+IKVV R RP N E ++ + ++ C + ++ FTFD V
Sbjct: 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCT--------VDSKEAQG--SFTFDRV 54
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME----RGIMQN 144
+ M Q++I++ S++P V+ +L+GYN T+FAYGQTG GK++TM G+ ++ RG++
Sbjct: 55 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPR 114
Query: 145 AFRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
QIF + V Y+E+Y +IRDLL L
Sbjct: 115 IVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNL 157
Score = 58.4 bits (142), Expect = 2e-09
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVT 261
QIF + V Y+E+Y +IRDLL L + K + KGL +
Sbjct: 118 QIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVY-VKGLLEIY 176
Query: 262 CQSVEEIENCRKKGYKSRKTA 282
SV+E+ ++G +R A
Sbjct: 177 VSSVQEVYEVMRRGGNARAVA 197
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 263 bits (675), Expect = 2e-83
Identities = 107/217 (49%), Positives = 138/217 (63%), Gaps = 17/217 (7%)
Query: 287 KCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---P-----CKGLRSVTCQSVEEI 338
+ +V YLE+YQ +IRDLL+ D +L L P K L S +SV+EI
Sbjct: 150 QYLVRASYLEIYQEEIRDLLSK------DQTKRLELKERPDTGVYVKDLSSFVTKSVKEI 203
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIHSKLNLVDLAGSE 396
E+ G ++R +T N++SSRSHAIF++T+ + + KLNLVDLAGSE
Sbjct: 204 EHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDLAGSE 263
Query: 397 CLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAK 455
K+ A RLKE +INLSL A+ VIS+ V GK T+IPYRDS LT+LLQDS GGNAK
Sbjct: 264 RQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAK 323
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
T+M+AN+GPA+ +ETL TL YANRAK IKN P +N
Sbjct: 324 TVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVN 360
Score = 195 bits (499), Expect = 1e-57
Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 13/184 (7%)
Query: 16 RRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPR 75
+ + E+++VVVRCRPMN E+ A + V+ +D +S++
Sbjct: 7 HSSGRENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHE- 65
Query: 76 QPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS 135
+ FTFDAVY A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGTGKT+TMEG
Sbjct: 66 ---MPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGI 122
Query: 136 QM---ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAK 192
+ +RG++ N+F IF + + + +V YLE+YQ +IRDLL+ D +
Sbjct: 123 RGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK------DQTKR 176
Query: 193 LNIY 196
L +
Sbjct: 177 LELK 180
Score = 62.2 bits (152), Expect = 1e-10
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 205 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---P-----CKG 256
IF + + + +V YLE+YQ +IRDLL+ D +L L P K
Sbjct: 138 HIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSK------DQTKRLELKERPDTGVYVKD 191
Query: 257 LRSVTCQSVEEIENCRKKGYKSRKTA 282
L S +SV+EIE+ G ++R
Sbjct: 192 LSSFVTKSVKEIEHVMNVGNQNRSVG 217
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 261 bits (669), Expect = 2e-82
Identities = 85/226 (37%), Positives = 124/226 (54%), Gaps = 19/226 (8%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP----------CKGLRS 329
+ + + YLELY ++ DLL+ D K+ + +GL
Sbjct: 149 ELRMMEVEYTMRISYLELYNEELCDLLST------DDTTKIRIFDDSTKKGSVIIQGLEE 202
Query: 330 VTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIHSKL 387
+ S +++ +KG + RKTA+T N SSRSH +F + + + + L KL
Sbjct: 203 IPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKL 262
Query: 388 NLVDLAGSECLQKS-NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLL 446
NLVDLAGSE + K+ N IR++E IN SLL + +VI++ V ++PYR+S LT+LL
Sbjct: 263 NLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLL 322
Query: 447 QDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
Q+S GG KT +IA I P +ETL TLEYA+RAK I+N P +N
Sbjct: 323 QESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
Score = 196 bits (500), Expect = 1e-57
Identities = 65/273 (23%), Positives = 110/273 (40%), Gaps = 74/273 (27%)
Query: 22 HPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKAR 81
+ ++NI+V VR RP+N ER V+ + ++ ++ +
Sbjct: 15 RQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTR-------HTLDSKLTK 67
Query: 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---- 137
+FTFD +G ++ Q ++Y V P++ +L+GYN T+FAYGQTGTGKT TM G++
Sbjct: 68 KFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELK 127
Query: 138 -------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ GI+ A +FD + + + + YLELY ++ DLL+ D
Sbjct: 128 SSWEDDSDIGIIPRALSHLFDELRMMEV-EYTMRISYLELYNEELCDLLST------DDT 180
Query: 191 AKLNIY-HGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAK 249
K+ I+ + I
Sbjct: 181 TKIRIFDDSTKKGSVII------------------------------------------- 197
Query: 250 LTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
+GL + S +++ +KG + RKTA
Sbjct: 198 -----QGLEEIPVHSKDDVYKLLEKGKERRKTA 225
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 257 bits (659), Expect = 1e-81
Identities = 81/208 (38%), Positives = 120/208 (57%), Gaps = 4/208 (1%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVTCQSVEE 337
+ + + ++ Y E+Y KIRDLL+VS+ L + K ++ KG S +E
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPY-VKGCTERFVCSPDE 178
Query: 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSEC 397
+ + +G +R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE
Sbjct: 179 VMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEK 237
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTL 457
+ K+ A L E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T
Sbjct: 238 VSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTT 297
Query: 458 MIANIGPAASTYKETLVTLEYANRAKKI 485
++ P++ ET TL + RAK I
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTI 325
Score = 182 bits (465), Expect = 4e-53
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+ NIKV+ R RP+N E + + K + ++ + FD V
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRV 51
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNA 145
+ +Q ++Y + + +V +L GYN TIFAYGQT +GKT TMEG GI+
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRI 111
Query: 146 FRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ IF++ ++ + ++ Y E+Y KIRDLL+VS+ L
Sbjct: 112 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 153
Score = 58.4 bits (142), Expect = 2e-09
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL--FDTKAKLTLPCKGLRSVT 261
IF++ ++ + ++ Y E+Y KIRDLL+VS+ L + K ++ KG
Sbjct: 114 DIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPY-VKGCTERF 172
Query: 262 CQSVEEIENCRKKGYKSRKTA 282
S +E+ + +G +R A
Sbjct: 173 VCSPDEVMDTIDEGKSNRHVA 193
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 253 bits (649), Expect = 1e-79
Identities = 86/264 (32%), Positives = 134/264 (50%), Gaps = 17/264 (6%)
Query: 276 YKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP--------CKGL 327
++ K + ++ +ELYQ + DLL + + KL + + +
Sbjct: 115 FRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ----AKRLKLDIKKDSKGMVSVENV 170
Query: 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKL 387
V+ + EE++ ++G + R T T N+ SSRSH I V ++ N +T KL
Sbjct: 171 TVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIA-RGKL 229
Query: 388 NLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQ 447
+ VDLAGSE ++KS + +LKE IN SL A+ VIS+ +G +IPYR+ LT L+
Sbjct: 230 SFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMS 289
Query: 448 DSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMRE 507
DS GGNAKTLM NI PA S ET +L YA+R + I N P+ N ++ ++++
Sbjct: 290 DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEV----ARLKK 345
Query: 508 KYKKALEDLAQCKMDYEMAEKRAD 531
E + D E+ E + +
Sbjct: 346 LVSYWKEQAGRKGDDEELEEIQDE 369
Score = 178 bits (454), Expect = 4e-51
Identities = 57/258 (22%), Positives = 97/258 (37%), Gaps = 66/258 (25%)
Query: 28 QD--ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTF 85
+D I+V R RP+ E A N I+ + KA++ +
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEH---------LWKDDKAKQHMY 51
Query: 86 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNA 145
D V+ ATQ +++E + +V + GYNV IFAYGQTG+GKTFT+ G+ G+ A
Sbjct: 52 DRVFDGNATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRA 110
Query: 146 FRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGT 204
++F K+ + ++ +ELYQ + DLL + + KL+I
Sbjct: 111 MSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQ----AKRLKLDIKK-DSKGMV 165
Query: 205 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQS 264
+ + + V+ +
Sbjct: 166 SV------------------------------------------------ENVTVVSIST 177
Query: 265 VEEIENCRKKGYKSRKTA 282
EE++ ++G + R T
Sbjct: 178 YEELKTIIQRGSEQRHTT 195
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 252 bits (645), Expect = 3e-79
Identities = 83/238 (34%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 287 KCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---PCKG-----LRSVTCQSVEEI 338
+ ++ Y+E+Y I DLL + L + + L + E
Sbjct: 123 EFLLRVSYMEIYNETITDLLCGT-----QKMKPLIIREDVNRNVYVADLTEEVVYTSEMA 177
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL----KVLNSKTGKALIHSKLNLVDLAG 394
KG KSR T N SSRSH IF + L K S ++ S LNLVDLAG
Sbjct: 178 LKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAG 237
Query: 395 SECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK--TYIPYRDSLLTQLLQDSFGG 452
SE ++ A +RLKE C IN SL + +VI G+ +I YRDS LT++LQ+S GG
Sbjct: 238 SERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGG 297
Query: 453 NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYK 510
NAKT +I I P + + ETL L++A+ AK +KN P +N E +E +
Sbjct: 298 NAKTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVN---EV--STDELEHHHHH 348
Score = 185 bits (473), Expect = 5e-54
Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 11/158 (6%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDA 87
++ + V VR RP+N E + T + Q ++ F FD
Sbjct: 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIY-----------QVDGSKSFNFDR 50
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFR 147
V+ T +YE P+++ + GYN TIFAYGQT +GKT+TM GS+ G++ A
Sbjct: 51 VFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIH 110
Query: 148 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 185
IF +K + ++ Y+E+Y I DLL ++
Sbjct: 111 DIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKM 148
Score = 56.8 bits (138), Expect = 6e-09
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 13/86 (15%)
Query: 205 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---PCKG----- 256
IF +K + ++ Y+E+Y I DLL + L + +
Sbjct: 111 DIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGT-----QKMKPLIIREDVNRNVYVAD 165
Query: 257 LRSVTCQSVEEIENCRKKGYKSRKTA 282
L + E KG KSR
Sbjct: 166 LTEEVVYTSEMALKWITKGEKSRHYG 191
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 252 bits (646), Expect = 3e-79
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 5/214 (2%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 339
K + + + E+Y GK+ DLL + K + K L+ + + EE+
Sbjct: 129 NIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELI 188
Query: 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQ 399
G RK ND SSRSHAI + LK K K+ +DLAGSE
Sbjct: 189 LKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK----DINKNTSLGKIAFIDLAGSERGA 244
Query: 400 KSNATDIRLK-ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLM 458
+ + + + + + IN SLLA+ + I + + K +IP+RDS LT++L+D F G +K++M
Sbjct: 245 DTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIM 304
Query: 459 IANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
IANI P S ++TL TL Y++R K N+
Sbjct: 305 IANISPTISCCEQTLNTLRYSSRVKNKGNSKLEG 338
Score = 182 bits (464), Expect = 1e-52
Identities = 51/160 (31%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
IKVVVR RP++ E+K ++I + L I ++ + + F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 92 QATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTMEGSQM-----ERGIMQNA 145
+YEN+++P++ + +G + FAYGQTG+GKT+TM GSQ GI Q A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 146 FRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRP 184
IF F +K + + + E+Y GK+ DLL +
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM 160
Score = 58.8 bits (143), Expect = 1e-09
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263
IF F +K + + + E+Y GK+ DLL + K + K L+ +
Sbjct: 123 DIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVL 182
Query: 264 SVEEIENCRKKGYKSRKTA 282
+ EE+ G RK
Sbjct: 183 TKEELILKMIDGVLLRKIG 201
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 250 bits (642), Expect = 1e-78
Identities = 88/241 (36%), Positives = 123/241 (51%), Gaps = 32/241 (13%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---PCKG-----LRSVT 331
T VE Y+E+Y ++RDLLN K L + P G L +
Sbjct: 132 DTTNDNMSYSVEVSYMEIYCERVRDLLNP------KNKGNLRVREHPLLGPYVEDLSKLA 185
Query: 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIH-SKLN 388
S +I++ G K R A+T N+ SSRSHA+F + K +++T SK++
Sbjct: 186 VTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKIS 245
Query: 389 LVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS------------TVAGKTYIP 436
LVDLAGSE + A RLKE IN SL + KVIS+ +IP
Sbjct: 246 LVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIP 305
Query: 437 YRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYRE 496
YRDS+LT LL+++ GGN++T M+A + PA Y ETL TL YA+RAK+I+N ++N
Sbjct: 306 YRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN---H 362
Query: 497 D 497
Sbjct: 363 H 363
Score = 176 bits (448), Expect = 3e-50
Identities = 63/266 (23%), Positives = 99/266 (37%), Gaps = 74/266 (27%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
++KV VR RP N E + +I++ + + + +P++ K+ F+FD
Sbjct: 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI-----VNPKQPKETPKS--FSFDYS 55
Query: 89 YGMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM--E 138
Y A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q +
Sbjct: 56 YWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQ 115
Query: 139 RGIMQNAFRQIFD--FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIY 196
+GI+ +F VE Y+E+Y ++RDLLN K L +
Sbjct: 116 QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP------KNKGNLRV- 168
Query: 197 HGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKG 256
R+ + VE
Sbjct: 169 --REHPLLGPY------------VE----------------------------------D 180
Query: 257 LRSVTCQSVEEIENCRKKGYKSRKTA 282
L + S +I++ G K R A
Sbjct: 181 LSKLAVTSYNDIQDLMDSGNKPRTVA 206
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 246 bits (631), Expect = 2e-77
Identities = 75/201 (37%), Positives = 113/201 (56%), Gaps = 5/201 (2%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTK----AKLTLPCKGLRSVTCQSVEEIENCRKKG 345
+ E+Y +RDLL + + L GL QSV++I + G
Sbjct: 130 ITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFG 189
Query: 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATD 405
+ +R T T N++SSRSHA+ IVT++ ++ TG KLNLVDLAGSE + KS A
Sbjct: 190 HTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRT-TGKLNLVDLAGSERVGKSGAEG 248
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
RL+E IN SL A+ VI++ + + ++P+R+S LT LLQDS G++KTLM+ + P
Sbjct: 249 SRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPV 308
Query: 466 ASTYKETLVTLEYANRAKKIK 486
ETL +L++A R + ++
Sbjct: 309 EKNTSETLYSLKFAERVRSVE 329
Score = 183 bits (468), Expect = 2e-53
Identities = 63/254 (24%), Positives = 99/254 (38%), Gaps = 64/254 (25%)
Query: 31 NIKVVVRCRPMNVPERKA-HVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
NI+V+ R RP+ + + N + D + + GK F D V+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI--------IHLLHKGKPVSFELDKVF 56
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
QA+Q ++++ V+ +V + G+NV IFAYGQTG GKT+TMEG+ GI Q A + +
Sbjct: 57 SPQASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLL 115
Query: 150 FDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFD 208
F ++K + + E+Y +RDLL + + KL I +G
Sbjct: 116 FSEVQEKASDWEYTITVSAAEIYNEVLRDLLGK------EPQEKLEIRLCPDGSGQ---- 165
Query: 209 FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 268
L V GL QSV++I
Sbjct: 166 ---------------------------LYV----------------PGLTEFQVQSVDDI 182
Query: 269 ENCRKKGYKSRKTA 282
+ G+ +R T
Sbjct: 183 NKVFEFGHTNRTTE 196
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 246 bits (630), Expect = 5e-77
Identities = 92/225 (40%), Positives = 125/225 (55%), Gaps = 22/225 (9%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---PCKG-----LRSVT 331
K + VE Y+E+Y K+RDLL+ ++ L + G L +
Sbjct: 133 KEENEEQSFKVEVSYMEIYNEKVRDLLDPK-----GSRQTLKVREHSVLGPYVDGLSKLA 187
Query: 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIH-SKLN 388
S ++IE+ +G KSR A+T N+ SSRSHA+F +TL + + K+G + KL+
Sbjct: 188 VTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLS 247
Query: 389 LVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVIS-----STVAGK-TYIPYRDSLL 442
LVDLAGSE K+ A RLKE IN SL + VIS S K ++PYRDS+L
Sbjct: 248 LVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVL 307
Query: 443 TQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKN 487
T LL+DS GGN+KT M+A + PAA Y ETL TL YA+RAK +
Sbjct: 308 TWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKHHHH 352
Score = 182 bits (465), Expect = 8e-53
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
+KV VR RPMN E H + V+ +D K L+ +T+ K G+ + F +D +
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-NTNLSKGDARGQPKVFAYDHCFW 60
Query: 91 MQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM 142
A Q +++ ++ + GYN IFAYGQTG+GK++TM G+ + G++
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLI 120
Query: 143 QNAFRQIFDFKQKEKRHK--CIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNI 195
+F+ QKE+ + VE Y+E+Y K+RDLL+ ++ L +
Sbjct: 121 PRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPK-----GSRQTLKV 170
Score = 56.8 bits (138), Expect = 7e-09
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 15/88 (17%)
Query: 205 QIFDFKQKEKRHK--CIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL---PCKG--- 256
+F+ QKE+ + VE Y+E+Y K+RDLL+ ++ L + G
Sbjct: 126 GLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPK-----GSRQTLKVREHSVLGPYV 180
Query: 257 --LRSVTCQSVEEIENCRKKGYKSRKTA 282
L + S ++IE+ +G KSR A
Sbjct: 181 DGLSKLAVTSYKDIESLMSEGNKSRTVA 208
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 246 bits (630), Expect = 6e-77
Identities = 73/209 (34%), Positives = 106/209 (50%), Gaps = 10/209 (4%)
Query: 286 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-------CKGLRSVTCQSVEEI 338
H V YLE+Y + DLL+ + P + + +T+ KGL E+
Sbjct: 151 HAITVRVSYLEIYNESLFDLLS-TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDA 209
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG-KALIHSKLNLVDLAGSEC 397
+ +G +R AS N SSRSH IF + L+ + + I SK+NLVDLAGSE
Sbjct: 210 FSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSER 269
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
L KS + LKE IN SL + + I + K +IP+R LT L+DS GGN
Sbjct: 270 LGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNM 329
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKI 485
+++ NI A+ +ETL +L +A+R K +
Sbjct: 330 VLVTNIYGEAAQLEETLSSLRFASRMKLV 358
Score = 182 bits (464), Expect = 1e-52
Identities = 60/276 (21%), Positives = 96/276 (34%), Gaps = 62/276 (22%)
Query: 12 HNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD- 70
H+ + L P + + VR +P + + +I+ K+ + I D
Sbjct: 5 HHHHHHSSGLVPRGSGTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDI 59
Query: 71 -RLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKT 129
R F D V A+Q +YE + +V+ L GYN TI YGQTG GKT
Sbjct: 60 RRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKT 118
Query: 130 FTMEGS---QMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+TM G+ RGI+ A +Q+F ++ H V YLE+Y + DLL+ + P +
Sbjct: 119 YTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS-TLPYV 177
Query: 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 246
+ + I E ++
Sbjct: 178 GPSVTPMTI----------------VENPQGVFIK------------------------- 196
Query: 247 KAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
GL E+ + +G +R A
Sbjct: 197 ---------GLSVHLTSQEEDAFSLLFEGETNRIIA 223
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 246 bits (631), Expect = 2e-76
Identities = 75/224 (33%), Positives = 116/224 (51%), Gaps = 24/224 (10%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL-------PC-KGLRSV 330
+ + V + E+Y GK+ DLLN KAKL + GL+
Sbjct: 200 NQPRYRNLNLEVYVTFFEIYNGKVFDLLN--------KKAKLRVLEDSRQQVQVVGLQEY 251
Query: 331 TCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLV 390
+++ G R + T+ N SSRSHA F + L+ G+ +H K +LV
Sbjct: 252 LVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR----TKGR--LHGKFSLV 305
Query: 391 DLAGSECLQKSNATDIRLK-ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDS 449
DLAG+E +++ D + + E EIN SLLA+ + I + K + P+R+S LTQ+L+DS
Sbjct: 306 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDS 365
Query: 450 F-GGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
F G N++T MIA I P S+ + TL TL YA+R K++ + + +
Sbjct: 366 FIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
Score = 190 bits (485), Expect = 4e-55
Identities = 64/282 (22%), Positives = 97/282 (34%), Gaps = 71/282 (25%)
Query: 13 NECRRTKSLHPNEHHQ---DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYST 69
E R T P + I V VR RP+N E +VI + + K L +
Sbjct: 51 KEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPK 109
Query: 70 DRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKT 129
++ + + + F FD + A+ +Y + RP+V + G T FAYGQTG+GKT
Sbjct: 110 LKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKT 169
Query: 130 FTMEGSQM------ERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLLNV 181
TM G +GI A R +F + + + V + E+Y GK+ DLLN
Sbjct: 170 HTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN- 228
Query: 182 SRPTLFDTKAKLNIY-HGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSR 240
KAKL + RQ Q+
Sbjct: 229 -------KKAKLRVLEDSRQ--QVQV---------------------------------- 245
Query: 241 PTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
GL+ +++ G R +
Sbjct: 246 --------------VGLQEYLVTCADDVIKMINMGSACRTSG 273
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 245 bits (628), Expect = 3e-76
Identities = 76/221 (34%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL-------PC-KGLRSV 330
+ ++ V + E+Y GK+ DLLN KAKL + GL+
Sbjct: 180 NQPCYRKLGLEVYVTFFEIYNGKLFDLLN--------KKAKLRVLEDGKQQVQVVGLQEH 231
Query: 331 TCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLV 390
S +++ G R + T+ N SSRSHA F + L+ K +H K +LV
Sbjct: 232 LVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRA------KGRMHGKFSLV 285
Query: 391 DLAGSECLQKSNATDIRLK-ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDS 449
DLAG+E +++ D + + E EIN SLLA+ + I + K + P+R+S LTQ+L+DS
Sbjct: 286 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDS 345
Query: 450 F-GGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489
F G N++T MIA I P S+ + TL TL YA+R K++
Sbjct: 346 FIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
Score = 191 bits (488), Expect = 7e-56
Identities = 67/281 (23%), Positives = 100/281 (35%), Gaps = 71/281 (25%)
Query: 14 ECRRTKSLHPNEHHQ---DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD 70
E R T HP + I V VR RP+N E +VI I + K L +
Sbjct: 32 EFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPKL 90
Query: 71 RLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130
++ + + + F FD + A+ +Y + RP+V + G T FAYGQTG+GKT
Sbjct: 91 KVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 150
Query: 131 TMEGSQM------ERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLLNVS 182
TM G +GI A R +F + ++ V + E+Y GK+ DLLN
Sbjct: 151 TMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-- 208
Query: 183 RPTLFDTKAKLNIY-HGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRP 241
KAKL + G+Q Q+
Sbjct: 209 ------KKAKLRVLEDGKQ--QVQV----------------------------------- 225
Query: 242 TLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
GL+ S +++ G R +
Sbjct: 226 -------------VGLQEHLVNSADDVIKMIDMGSACRTSG 253
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 242 bits (621), Expect = 1e-75
Identities = 84/238 (35%), Positives = 116/238 (48%), Gaps = 25/238 (10%)
Query: 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK 325
I + KG+ V C ++E+Y I DLL DT L +
Sbjct: 119 NWINKLKTKGWD----------YKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 168
Query: 326 -----------GLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVL 374
+ S +S E +E KK K R TAST N++SS SH+IFI+ L
Sbjct: 169 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGS 228
Query: 375 NSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS---TVAG 431
N+KTG + LNLVDLAGSE + S RL+E IN SL + VI + +
Sbjct: 229 NAKTGAHS-YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 287
Query: 432 KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489
K +IP+R+S LT LLQ S G++KTLM NI P++S ETL +L +A++ +
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345
Score = 180 bits (460), Expect = 4e-52
Identities = 62/256 (24%), Positives = 92/256 (35%), Gaps = 57/256 (22%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+V R RP + + + +++ F FD ++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVH--EFKFDKIFD 61
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ + IF
Sbjct: 62 QQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIF 118
Query: 151 DF--KQKEKRHKCIVECCYLELYQGKIRDLL--NVSRPTLFDTKAKLNIYHGRQSNGTQI 206
++ K K K V C ++E+Y I DLL + + K I H +++ T I
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 207 FDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266
+ S +S E
Sbjct: 179 ------------------------------------------------TNVTSCKLESEE 190
Query: 267 EIENCRKKGYKSRKTA 282
+E KK K R TA
Sbjct: 191 MVEIILKKANKLRSTA 206
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 242 bits (620), Expect = 1e-75
Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 17/228 (7%)
Query: 278 SRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPC------------- 324
+ ++ +EC Y+E+Y I DLL + + +
Sbjct: 122 TANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYI 181
Query: 325 KGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH 384
+ + S +++ KK K R TA+T N+ SSRSH++F+V + N TG+
Sbjct: 182 TNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETS-Q 240
Query: 385 SKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS---TVAGKTYIPYRDSL 441
KLNLVDLAGSE + S T RL+E IN SL + VI + AGK YIP+R+S
Sbjct: 241 GKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSK 300
Query: 442 LTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489
LT LLQ S G++KTLM NI P + ETL +L +A++ K A
Sbjct: 301 LTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348
Score = 178 bits (455), Expect = 2e-51
Identities = 63/258 (24%), Positives = 93/258 (36%), Gaps = 60/258 (23%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+V R RP + E + +I+ K + + F FD ++
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTIN---RNEGRILSYNFQFDMIFE 62
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
T EI+E +R +V L GYNV IFAYGQTG+GKT+TM + G++ IF
Sbjct: 63 PSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIF 119
Query: 151 DF--KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL----FDTKAKLNIYHGRQSNGT 204
+ KE+ +EC Y+E+Y I DLL + K +I H + GT
Sbjct: 120 KWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGT 179
Query: 205 QIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQS 264
I + + S
Sbjct: 180 YI------------------------------------------------TNVTRMKMTS 191
Query: 265 VEEIENCRKKGYKSRKTA 282
+++ KK K R TA
Sbjct: 192 TSQVDTILKKASKMRSTA 209
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 242 bits (619), Expect = 2e-75
Identities = 85/220 (38%), Positives = 125/220 (56%), Gaps = 23/220 (10%)
Query: 282 AKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTL--------PCKGLRSVTCQ 333
C+V YLE+Y+ + RDLL V + L G++ V +
Sbjct: 130 ENDLLDCLVHVSYLEVYKEEFRDLLEVG-----TASRDIQLREDERGNVVLCGVKEVDVE 184
Query: 334 SVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLK-------VLNSKTGKALIHSK 386
++E+ + + G +R T +T+ N SSRSH +F VTL+ L L+ SK
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSK 244
Query: 387 LNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLT 443
+ VDLAGSE + K+ +T RLKE +IN SLLA+ VIS+ + ++IPYRDS +T
Sbjct: 245 FHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKIT 304
Query: 444 QLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483
++L+DS GGNAKT+MIA + P++S + ETL TL YA+RA+
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 190 bits (485), Expect = 7e-56
Identities = 53/261 (20%), Positives = 102/261 (39%), Gaps = 72/261 (27%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDA 87
++ ++V +R RP+ E ++ ++++ +++ G+ R F F
Sbjct: 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------------GRDRHFGFHV 56
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM------ERGI 141
V A Q +Y+ V+P++ G+N T+FAYGQTG+GKT+TM + + E+GI
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 142 MQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQS 201
+ A + F + C+V YLE+Y+ + RDLL V + +
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVG-----TASRDIQL------ 165
Query: 202 NGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 261
+E +V + + + V
Sbjct: 166 ----------REDERGNVV-----------LCGV----------------------KEVD 182
Query: 262 CQSVEEIENCRKKGYKSRKTA 282
+ ++E+ + + G +R T
Sbjct: 183 VEGLDEVLSLLEMGNAARHTG 203
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 241 bits (616), Expect = 7e-75
Identities = 83/211 (39%), Positives = 115/211 (54%), Gaps = 5/211 (2%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 339
K+ C YLE+Y +IRDLL S P + + GL +S EEI
Sbjct: 145 DEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEIL 204
Query: 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALIHSKLNLVDLAGSEC 397
+ G K+R T N SSRSHA+F + L + + + + +K++L+DLAGSE
Sbjct: 205 HLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSER 264
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNA 454
S A R E IN SLLA+ VI++ K +IPYR+S LT+LL+DS GGN
Sbjct: 265 ASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324
Query: 455 KTLMIANIGPAASTYKETLVTLEYANRAKKI 485
+T+MIA + P++ Y +T TL+YANRAK I
Sbjct: 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 184 bits (469), Expect = 2e-53
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 12/167 (7%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCL-----------SIQYSTDRLKPRQPG 78
++KVVVR RP N E+ A V+ + + + +T++ ++
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69
Query: 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME 138
K +F FDAV+ +TQ+E++E++ +P++ L+GYN T+ AYG TG GKT TM GS E
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADE 129
Query: 139 RGIMQNAFRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRP 184
G+M ++ + ++ C YLE+Y +IRDLL S P
Sbjct: 130 PGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP 176
Score = 52.6 bits (127), Expect = 2e-07
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 205 QIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263
++ + ++ C YLE+Y +IRDLL S P + + GL +
Sbjct: 139 HLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPK 198
Query: 264 SVEEIENCRKKGYKSRKTA 282
S EEI + G K+R
Sbjct: 199 SSEEILHLLDNGNKNRTQH 217
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 241 bits (618), Expect = 4e-74
Identities = 89/278 (32%), Positives = 122/278 (43%), Gaps = 46/278 (16%)
Query: 277 KSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP----------CKG 326
S + V+ Y E+Y +RDLL K L K
Sbjct: 176 ASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVV----PNKPPYYLKVRESPTEGPYVKD 231
Query: 327 LRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTL--KVLNSKTGKALI- 383
L V + +EEI + G SR AST ND SSRSHA+F + L + +T
Sbjct: 232 LTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTER 291
Query: 384 HSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKT---------- 433
S++ LVDLAGSE + + AT RL+E IN SL + +VI++ K+
Sbjct: 292 SSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVK 351
Query: 434 ------------YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANR 481
+PYRDS+LT LL+DS GGN+KT MIA I P Y ETL TL YA++
Sbjct: 352 SGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPTD--YDETLSTLRYADQ 409
Query: 482 AKKIKNAPNINFYREDRCHNEEKMREKYKKALEDLAQC 519
AK+I+ +N + + +C
Sbjct: 410 AKRIRTRAVVN---QVD--GVSAAERDAQIPSIVHRKC 442
Score = 177 bits (452), Expect = 4e-50
Identities = 58/278 (20%), Positives = 96/278 (34%), Gaps = 81/278 (29%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQ-------YSTDRLKPRQPGKAR 81
N++VVVR R E + + E ++++D + S+ + R+ + +
Sbjct: 37 GANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEK 96
Query: 82 RFTFDAVYGMQ-------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134
FTFD + ATQ +Y++ ++H GY+ IFAYGQTG+GK++TM G
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 135 SQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLN 194
+ + G++ +F
Sbjct: 157 TPDQPGLIPRTCEDLFQ------------------------------------------- 173
Query: 195 IYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP- 253
+I + + V+ Y E+Y +RDLL K L
Sbjct: 174 ----------RIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVV----PNKPPYYLKV 219
Query: 254 ---------CKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
K L V + +EEI + G SR A
Sbjct: 220 RESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVA 257
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 239 bits (611), Expect = 7e-74
Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 13/219 (5%)
Query: 278 SRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPC--------KGLRS 329
+++ + + Y+E+Y +RDLL + ++ R
Sbjct: 158 AQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARY 217
Query: 330 VTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNL 389
V +E++ ++R A T N+ SSRSH++F + + +S G + L+L
Sbjct: 218 VPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSSRGLQC-GAPLSL 276
Query: 390 VDLAGSECLQKSNAT----DIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQL 445
VDLAGSE L A RL+E IN SL + VI + ++++PYR+S LT L
Sbjct: 277 VDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYL 336
Query: 446 LQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKK 484
LQ+S GG+AK LM NI P E+L +L +A++ +
Sbjct: 337 LQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQ 375
Score = 176 bits (448), Expect = 3e-50
Identities = 55/268 (20%), Positives = 83/268 (30%), Gaps = 66/268 (24%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSI----------QYSTDRLKPRQPGKA 80
NI+V R RP+ E ++ + P
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82
Query: 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG----SQ 136
F+FD V+ + Q E++E + +V L GY V IFAYGQTG+GKTFTMEG
Sbjct: 83 HDFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 137 MERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLN 194
G++ A R +F + + Y+E+Y +RDLL +
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRK--GQGGECE 199
Query: 195 IYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPC 254
I + L V
Sbjct: 200 IRRAGPGSEE-------------------------------LTV---------------- 212
Query: 255 KGLRSVTCQSVEEIENCRKKGYKSRKTA 282
R V +E++ ++R A
Sbjct: 213 TNARYVPVSCEKEVDALLHLARQNRAVA 240
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 238 bits (609), Expect = 3e-73
Identities = 85/225 (37%), Positives = 115/225 (51%), Gaps = 15/225 (6%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GL 327
K K V ++E+Y I DLL DT L + +
Sbjct: 178 NKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNV 237
Query: 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKL 387
SV +S E +E KK K R TAST N++SSRSH+IFI+ L N+KTG + L
Sbjct: 238 TSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS-YGTL 296
Query: 388 NLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS---TVAGKTYIPYRDSLLTQ 444
NLVDLAGSE + S RL+E IN SL A+ VI + + K +IP+R+S LT
Sbjct: 297 NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTY 356
Query: 445 LLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAP 489
LLQ S G++KTLM NI P++S ETL +L +A++ +
Sbjct: 357 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401
Score = 178 bits (455), Expect = 6e-51
Identities = 74/282 (26%), Positives = 107/282 (37%), Gaps = 63/282 (22%)
Query: 7 KKLKRHNECRRTKSLHPNEHHQD--ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLS 64
+ L + RR +LH NE Q+ NI+V +R RP + + +
Sbjct: 38 EILIKEETVRR--TLH-NEL-QELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGV 93
Query: 65 IQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQT 124
S + K + + F FD ++ Q T ++++ V +V L GYNV IFAYGQT
Sbjct: 94 Q--SMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQT 150
Query: 125 GTGKTFTMEGSQMERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLLNVS 182
G+GKTFTM GI+ + IF++ K K K V ++E+Y I DLL
Sbjct: 151 GSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSD 208
Query: 183 RPTLFDT--KAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSR 240
DT K I H +++ T I
Sbjct: 209 NNNKEDTSIGLKHEIRHDQETKTTTI---------------------------------- 234
Query: 241 PTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
+ SV +S E +E KK K R TA
Sbjct: 235 --------------TNVTSVKLESEEMVEIILKKANKLRSTA 262
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 232 bits (593), Expect = 7e-71
Identities = 65/218 (29%), Positives = 102/218 (46%), Gaps = 9/218 (4%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL---FDTKAKLTLPCKGLRSVTCQSV 335
R + ++ +LE+Y + DLL+ + + K + + T
Sbjct: 178 RGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDP 237
Query: 336 EEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGS 395
+ + +R TAST N+ SSRSHA+ + L +++ + +NLVDLAGS
Sbjct: 238 NHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEIS-VGSINLVDLAGS 296
Query: 396 ECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAK 455
E S T R+ E IN SL + VI + + + +IPYR+S LT LL S GGN+K
Sbjct: 297 E----SPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSK 352
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK-NAPNIN 492
TLM N+ P ++E++ +L +A K N
Sbjct: 353 TLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
Score = 178 bits (454), Expect = 1e-50
Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 67/280 (23%)
Query: 7 KKLKRHNECRRTKSLHPNEHHQD--ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLS 64
++L + N R+ LH N D +NI+V R RP E D + +
Sbjct: 38 EQLFQSNMERK--ELH-NTV-MDLRDNIRVFCRIRPPLESEENRMCCTWTYHDES----T 89
Query: 65 IQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQT 124
++ + + + + F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQT
Sbjct: 90 VELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQT 148
Query: 125 GTGKTFTMEGSQMERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLLNVS 182
G+GKT+TM+G G++ +FD + + ++ +LE+Y + DLL+
Sbjct: 149 GSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNE 208
Query: 183 RPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 242
+ ++ + N +
Sbjct: 209 Q-----KDMEIRMAK-NNKNDIYV------------------------------------ 226
Query: 243 LFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTA 282
+ T + + +R TA
Sbjct: 227 ------------SNITEETVLDPNHLRHLMHTAKMNRATA 254
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 127 bits (320), Expect = 4e-35
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 415 NLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETL 473
N SL A+ VIS+ G T++PYRDS +T++LQDS GGN +T ++ P+ ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 474 VTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALEDLAQCKMDYEMAEKRADTL 533
TL + RAK IKN ++N + E+ ++KY+K E K + E +
Sbjct: 61 STLMFGQRAKTIKNTVSVN---LEL--TAEEWKKKYEKEKEKNKALKSVIQHLEVELNRW 115
Query: 534 KN 535
+N
Sbjct: 116 RN 117
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 125 bits (317), Expect = 7e-35
Identities = 40/102 (39%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 414 INLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKET 472
IN SL A+ VIS+ G T++PYRDS +T++LQDS GN +T ++ P+ ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 473 LVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALE 514
TL + RAK IKN ++N + E+ ++KY+K E
Sbjct: 64 KSTLMFGQRAKTIKNTVSVN---LEL--TAEEWKKKYEKEKE 100
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.7 bits (206), Expect = 6e-17
Identities = 99/653 (15%), Positives = 189/653 (28%), Gaps = 208/653 (31%)
Query: 22 HPNEHHQD-ENIKVVVRCR---PMNVPERKA-----HVENVIK-IDTTKKCLSIQYSTDR 71
H + HH D E + + + + V+++ K I + ++ I S D
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 72 ----------LKPRQPGKARRFTFDAV---YG--MQATQTE---------IYENSVRPMV 107
L +Q ++F + + Y M +TE +Y +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 108 N--HMLHGYNVT--------------------IFAYGQTGTGKT---------FTMEGSQ 136
N + YNV+ + G G+GKT + ++ +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CK 179
Query: 137 MERGI-----------------MQNAFRQI-FDFKQKEKRHKCIVECCYLELYQGKIRDL 178
M+ I +Q QI ++ + I + Q ++R L
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL--RIHSIQAELRRL 237
Query: 179 L-------------NVSRPTL---FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVEC 222
L NV F+ K+ + + Q+ DF ++
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHISLDH 293
Query: 223 CYLELYQGKIRDLLNVSRPTLFDTKAK-LTLPCKGLRSVTCQ------SV--EEIEN--C 271
+ L +++ LL K L + L S+ E I +
Sbjct: 294 HSMTLTPDEVKSLL-----------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 272 RKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF--DTKAKLTLPCKGL-- 327
+K K I+E L + R + + R ++F +P L
Sbjct: 343 TWDNWKHVNCDKLTT--IIESSLNVLEPAEYRKMFD--RLSVFPPSAH----IPTILLSL 394
Query: 328 --RSVTCQSVEEIEN-CRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH 384
V V + N K ++ + + +I+ L++ + +H
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIY---LELKVKLENEYALH 446
Query: 385 SKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPY------- 437
+VD +I + +L +++ S +I +
Sbjct: 447 RS--IVD-----------HYNIPKTFDSD-DLIPPYLDQYFYS------HIGHHLKNIEH 486
Query: 438 --RDSLLTQLLQD-SFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKK--IKNAPN-- 490
R +L + D F K I + A + L TL+ K N P
Sbjct: 487 PERMTLFRMVFLDFRFLE-QK---IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 491 ------INFYREDRCHNEEKMREKYKKALEDLAQCKMD------YEMAEKRAD 531
++F + E + KY DL + + +E A K+
Sbjct: 543 RLVNAILDFLPK---IEENLICSKYT----DLLRIALMAEDEAIFEEAHKQVQ 588
Score = 38.3 bits (88), Expect = 0.008
Identities = 33/228 (14%), Positives = 67/228 (29%), Gaps = 87/228 (38%)
Query: 1 MSSAHMKKL-KRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTT 59
++ H L ++ T S+ +I + ++ + N E H +++
Sbjct: 408 VNKLHKYSLVEKQP-KESTISIP--------SIYLELKVKLEN--EYALH-RSIVDHYNI 455
Query: 60 KKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIF 119
K S D + P Y Y +H+ G+++
Sbjct: 456 PKTFD---SDDLIPPYLDQ----------Y--------FY--------SHI--GHHL--- 481
Query: 120 AYGQTGTGKTFTMEGSQMERGIMQNAFRQIF-DFK--QKEKRHKCIVECCY--------- 167
+E FR +F DF+ +++ RH
Sbjct: 482 ---------------KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526
Query: 168 LELYQGKIRDLLNVSRPTL---------FDTKAKLNIYHGRQSNGTQI 206
L+ Y+ I D + P F K + N+ + ++ +I
Sbjct: 527 LKFYKPYICD----NDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.8 bits (152), Expect = 3e-10
Identities = 70/477 (14%), Positives = 142/477 (29%), Gaps = 151/477 (31%)
Query: 138 ERGIMQN------AFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---- 187
E ++ A + + + + K +++ Y+ R S LF
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN-YITARIMAKRPFDKKSNSALFRAVG 150
Query: 188 DTKAKL-NIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 246
+ A+L I+ G Q N F+ E R Y + Y + DL+ S TL +
Sbjct: 151 EGNAQLVAIFGG-QGNTDDYFE----ELRD------LY-QTYHVLVGDLIKFSAETLSE- 197
Query: 247 KAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLL 306
++ + E +G I + L
Sbjct: 198 --------------LIRTTLDAEKVFTQGL------------------------NILEWL 219
Query: 307 N--VSRP-TLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRS 363
+ P + ++ P G+ Q + + G+ + +Y + S
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGV----IQLAHYVVTAKLLGF-TPGELRSYLKGATGHS 274
Query: 364 HAIFIVTLKVLNSKTGKALIHSKLNLVDLA---GSECLQKSNATDIR---LKECCE---- 413
+ + + + + + ++ S + + G C + T + L++ E
Sbjct: 275 QGL-VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 414 --------INLSLLAVNKVISST-----VAGKTYIPYRDSLLTQLLQDSFGGN-AKTLMI 459
NL+ V ++ T + I SL+ N AK L++
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI----SLV----------NGAKNLVV 379
Query: 460 ANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRC---HNEEK------------ 504
+ GP S L L R K K + D+ +E K
Sbjct: 380 S--GPPQS-----LYGLNLTLR--KAKAPSGL-----DQSRIPFSERKLKFSNRFLPVAS 425
Query: 505 ------MREKYKKALEDLAQCKMDYEMAEKRA---DTL--KNMAIKQMKDVAELLVD 550
+ +DL + + + + + DT ++ + ++E +VD
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLS-GSISERIVD 481
Score = 48.9 bits (116), Expect = 4e-06
Identities = 51/319 (15%), Positives = 87/319 (27%), Gaps = 119/319 (37%)
Query: 298 YQGKIRDLLNVSRPT---LFDTKAKLTLPCKGLRSVTCQSVEEI--ENCRKK-----GYK 347
QG DL S +++ G S+ +I N G K
Sbjct: 1628 EQGMGMDLYKTS-KAAQDVWNRADNHFKDTYGF------SILDIVINNPVNLTIHFGGEK 1680
Query: 348 SRKTASTY-------FNDYSSRSHAIFIVTLKVLNSKTGKALIHS---KLN--------- 388
++ Y D ++ IF K +N + S L+
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIF----KEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 389 -LVDLAGSECLQKSNATDIRLKECCEINLSL-----L-AVNKVIS-----STVAGKTYIP 436
L++ A E L+ + SL L ++ V+S V
Sbjct: 1737 TLMEKAAFEDLKSKGLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVVF------ 1787
Query: 437 YRDSLLTQLLQDSFGGNAKTLMIA-NIGPAASTY-------------KETLVTLEYANRA 482
YR + + G + MIA N G A+++ K T +E N
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN-- 1845
Query: 483 KKIKNAPNINFYREDRCHNEEKMREKY-----KKALEDLAQCKMDYEMAEKRADTLKNMA 537
N N ++Y +AL+ + + +K
Sbjct: 1846 ---YNVEN----------------QQYVAAGDLRALDTVTNV----------LNFIKLQK 1876
Query: 538 IK--------QMKDVAELL 548
I +++V L
Sbjct: 1877 IDIIELQKSLSLEEVEGHL 1895
Score = 45.4 bits (107), Expect = 6e-05
Identities = 80/545 (14%), Positives = 140/545 (25%), Gaps = 197/545 (36%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFT--F 85
+ +I + + +IK Y T R+ ++P + + F
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKN----------YITARIMAKRPFDKKSNSALF 146
Query: 86 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNA 145
AV ++ IF GQ G +
Sbjct: 147 RAV---GEGNAQLV-----------------AIFG-GQ-GNTDDY--------------- 169
Query: 146 FRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFD---TKAKLNIYHGRQSN 202
F+ E R Y + Y + DL+ S TL + T +
Sbjct: 170 ----FE----ELRD------LY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--- 211
Query: 203 GTQIFDF-KQKEKRHK------CIVECCYLELYQ----GKIRDLLNVSRPTLFDTKAKLT 251
G I ++ + + C + + Q LL + L T
Sbjct: 212 GLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 252 LPCKGLRSVTC----QSVEE-IENCRKK-------GYKSRKTAKKRHKCIVECCYLELYQ 299
+GL + S E + RK G + + L
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPN----------TSLPP 321
Query: 300 GKIRDLLNVS--RPTLFDTKAKLTLP---CKGLRSVTCQSVEEIENCRKKGYKSRKTAST 354
+ D L + P+ P L Q + ++ +
Sbjct: 322 SILEDSLENNEGVPS----------PMLSISNLTQEQVQDY--VNKTNSHLPAGKQVEIS 369
Query: 355 YFNDYSSRSHAIFIVT-----LKVLNS--KTGKA----------------------L-I- 383
N + +V+ L LN + KA L +
Sbjct: 370 LVN---GAKN--LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 384 ---HSKLNLV--------DLAGSECLQKS-----------NATDIRLKECCEINLSLLAV 421
HS L LV DL + + + +D+R I+ + V
Sbjct: 425 SPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR-VLSGSISERI--V 480
Query: 422 NKVISSTV-------AGKTYI----PYRDSLLTQLLQDSFGGNAKTLMIA---NIGPAAS 467
+ +I V T+I P S L L + G +++A +I P
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDD 540
Query: 468 T-YKE 471
+K+
Sbjct: 541 YGFKQ 545
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.007
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 495 REDRCHNE-EKM---REKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMKD 543
+ DR E E + RE+ +K L+ ++D + + A K +++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQ-----ELDAASKVMEQE-WREKAKKDLEE 122
Score = 27.8 bits (61), Expect = 7.6
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 10/45 (22%)
Query: 502 EEKMREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMKDVAE 546
E++ REK KK LE+ + ++ + KN + +
Sbjct: 109 EQEWREKAKKDLEEW------NQRQSEQVE--KN--KINNRIADK 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 30.4 bits (69), Expect = 0.87
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 80 ARRF---TFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130
A+R+ D + +Q ++R V++ + G G GKT
Sbjct: 1 AKRYWNANLDTYHPKNVSQNRALL-TIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 30.6 bits (70), Expect = 1.5
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 122 GQTGTGKTFTM 132
G TGTGKT TM
Sbjct: 35 GATGTGKTVTM 45
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex,
hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus
subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A*
1d9x_A 2d7d_B* 2nmv_B*
Length = 661
Score = 30.6 bits (70), Expect = 1.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Query: 122 GQTGTGKTFTM 132
G TGTGKTFT+
Sbjct: 39 GATGTGKTFTV 49
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 30.5 bits (67), Expect = 1.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 503 EKMREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMKDVAELL 548
+K+++K +K +D+ + K YE + K D ++ M+ V E
Sbjct: 188 KKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQC 233
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 30.2 bits (68), Expect = 1.7
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 77 PGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132
P R + A++ E + + V ++ YG G GK++ +
Sbjct: 115 PKSYRHIHLSDIDVNNASRMEAFSAILD-FVEQYPSAEQKGLYLYGDMGIGKSYLL 169
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 29.6 bits (66), Expect = 2.8
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 114 YNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQG 173
N TI + G GK+FT + R MQ + I D +++ K + ++ G
Sbjct: 36 SNWTIL--AKPGAGKSFTA-KMLLLREYMQGSRVIIIDPEREYKEMCRKLGGVWINCTGG 92
Query: 174 KIR 176
+ +
Sbjct: 93 EGK 95
>3gs9_A Protein GP18; NP_465809.1, structural genomics center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: MLY MSE; 1.70A {Listeria monocytogenes egd-e}
Length = 342
Score = 29.3 bits (65), Expect = 3.3
Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 6/138 (4%)
Query: 383 IHSKLNLVDLAGSECLQKSNATDIRLKECCEI-NLSLLAVNKVI----SSTVAGKTYIPY 437
I N+++ E +N + + + + + ++ N+ + KT
Sbjct: 130 IIDPSNILEXVQQENFGNNNYLTL-IDQLLDDYGVVVIPDNRHLVFXPREIYGAKTENFI 188
Query: 438 RDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYRED 497
R T + I G S + Y + + ++
Sbjct: 189 RYXYNTDEASFDIDTLSLXTXIXGYGXVDSNGNNYFSPITYTSPEVEXWGIRWQEPVSDE 248
Query: 498 RCHNEEKMREKYKKALED 515
R M+ + L+D
Sbjct: 249 RYTVAGNMQRRLXLELQD 266
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix,
protein-DNA, transcription factor, terminat
mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O
3n7q_A*
Length = 343
Score = 28.5 bits (63), Expect = 6.5
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 499 CHNEEKMREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQMKDVAELLVDIG 552
CHN + K + L++L +D +MA KR + + I +D+ L+ G
Sbjct: 9 CHNTDSEPLKNEDLLKNLLTMGVDIDMARKRQPGVFHRMITNEQDLKMFLLSKG 62
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 28.1 bits (63), Expect = 6.9
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 77 PGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130
P + R + V + + + R + + ++ +G G GKT+
Sbjct: 16 PREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY 69
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 28.4 bits (63), Expect = 8.2
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTG 379
++ TY+ D +R++ V+LKV+NS TG
Sbjct: 496 KQVTQTYWEDQPTRAYGYSGVSLKVVNSTTG 526
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,139,922
Number of extensions: 471704
Number of successful extensions: 1439
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1255
Number of HSP's successfully gapped: 109
Length of query: 560
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 462
Effective length of database: 3,965,535
Effective search space: 1832077170
Effective search space used: 1832077170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)