RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7618
(560 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 156 bits (396), Expect = 6e-44
Identities = 80/204 (39%), Positives = 115/204 (56%), Gaps = 2/204 (0%)
Query: 283 KKRHKCIVECCYLELYQGKIRDLLNVSRPTL-FDTKAKLTLPCKGLRSVTCQSVEEIENC 341
+ + ++ Y E+Y KIRDLL+VS+ L KG S +E+ +
Sbjct: 121 DENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDT 180
Query: 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKS 401
+G +R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE + K+
Sbjct: 181 IDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEKVSKT 239
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A L E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T ++
Sbjct: 240 GAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVIC 299
Query: 462 IGPAASTYKETLVTLEYANRAKKI 485
P++ ET TL + RAK I
Sbjct: 300 CSPSSYNESETKSTLLFGQRAKTI 323
Score = 105 bits (262), Expect = 2e-25
Identities = 51/162 (31%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
+ NIKV+ R RP+N E + + K + ++ + FD V
Sbjct: 4 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRV 49
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNA 145
+ +Q ++Y + + +V +L GYN TIFAYGQT +GKT TMEG GI+
Sbjct: 50 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRI 109
Query: 146 FRQIFDF-KQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ IF++ ++ + ++ Y E+Y KIRDLL+VS+ L
Sbjct: 110 VQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNL 151
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 156 bits (394), Expect = 1e-43
Identities = 82/218 (37%), Positives = 111/218 (50%), Gaps = 15/218 (6%)
Query: 284 KRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-----------CKGLRSVTC 332
K V C ++E+Y I DLL DT L + S
Sbjct: 125 KGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKL 184
Query: 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDL 392
+S E +E KK K R TAST N++SS SH+IFI+ L N+KT A + LNLVDL
Sbjct: 185 ESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKT-GAHSYGTLNLVDL 243
Query: 393 AGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDS 449
AGSE + S RL+E IN SL + VI + + K +IP+R+S LT LLQ S
Sbjct: 244 AGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYS 303
Query: 450 FGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKN 487
G++KTLM NI P++S ETL +L +A++ +
Sbjct: 304 LTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 341
Score = 102 bits (254), Expect = 2e-24
Identities = 53/197 (26%), Positives = 81/197 (41%), Gaps = 7/197 (3%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+V R RP + ++I ++ +Q S + K + + F FD ++
Sbjct: 2 NIRVYCRIRPALKNLENSD-TSLINVNEFDDNSGVQ-SMEVTKIQNTAQVHEFKFDKIFD 59
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ + IF
Sbjct: 60 QQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGD--GIIPSTISHIF 116
Query: 151 DFKQ--KEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFD 208
++ K K V C ++E+Y I DLL DT L
Sbjct: 117 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 176
Query: 209 FKQKEKRHKCIVECCYL 225
+ + +
Sbjct: 177 TNVTSCKLESEEMVEII 193
Score = 30.0 bits (66), Expect = 0.87
Identities = 15/66 (22%), Positives = 26/66 (39%)
Query: 207 FDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266
+ K K K V C ++E+Y I DLL DT L + + ++
Sbjct: 118 WINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 177
Query: 267 EIENCR 272
+ +C+
Sbjct: 178 NVTSCK 183
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 154 bits (389), Expect = 1e-42
Identities = 71/201 (35%), Positives = 105/201 (52%), Gaps = 8/201 (3%)
Query: 287 KCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346
V + E+Y GK+ DLLN ++ + GL+ +++ G
Sbjct: 167 NLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGS 226
Query: 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKS-NATD 405
R + T+ N SSRSHA F + L+ K +H K +LVDLAG+E + +A
Sbjct: 227 ACRTSGQTFANSNSSRSHACFQILLRT------KGRLHGKFSLVDLAGNERGADTSSADR 280
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF-GGNAKTLMIANIGP 464
E EIN SLLA+ + I + K + P+R+S LTQ+L+DSF G N++T MIA I P
Sbjct: 281 QTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISP 340
Query: 465 AASTYKETLVTLEYANRAKKI 485
S+ + TL TL YA+R K++
Sbjct: 341 GISSCEYTLNTLRYADRVKEL 361
Score = 112 bits (281), Expect = 7e-28
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 4 AHM-KKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKC 62
A M K+ + EC L + ++ I V VR RP+N E +VI + + K
Sbjct: 6 ARMIKEFRVTMECSP---LTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS-KCL 61
Query: 63 LSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYG 122
L + ++ + + + F FD + A+ +Y + RP+V + G T FAYG
Sbjct: 62 LLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYG 121
Query: 123 QTGTGKTFTM------EGSQMERGIMQNAFRQIFDFKQKEKRH--KCIVECCYLELYQGK 174
QTG+GKT TM + +GI A R +F K + + V + E+Y GK
Sbjct: 122 QTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGK 181
Query: 175 IRDL 178
+ DL
Sbjct: 182 VFDL 185
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 152 bits (384), Expect = 5e-42
Identities = 88/217 (40%), Positives = 124/217 (57%), Gaps = 8/217 (3%)
Query: 279 RKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPT------LFDTKAKLTLPCKGLRSVTC 332
K + V+ LE+Y ++ DLLN S D + K + KGL +T
Sbjct: 128 EKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITV 187
Query: 333 QSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKV--LNSKTGKALIHSKLNLV 390
+ +E+ +KG R TA+T N YSSRSH++F VT+ + + + KLNLV
Sbjct: 188 HNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLV 247
Query: 391 DLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF 450
DLAGSE + +S A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS
Sbjct: 248 DLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSL 307
Query: 451 GGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKN 487
GG +T +IA I PA+ +ETL TLEYA+RAK I N
Sbjct: 308 GGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILN 344
Score = 111 bits (278), Expect = 1e-27
Identities = 67/205 (32%), Positives = 102/205 (49%), Gaps = 19/205 (9%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ + +TFD V+G
Sbjct: 1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMVFG 56
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME-----------R 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 57 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 116
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGR 199
GI+ QIF+ K + + V+ LE+Y ++ DLLN S ++ R
Sbjct: 117 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDV---SERLQMFDDPR 172
Query: 200 QSNGTQIFDFKQKEKRHKCIVECCY 224
G I ++ +K V
Sbjct: 173 NKRGVIIKGLEEITVHNKDEVYQIL 197
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 152 bits (384), Expect = 6e-42
Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 6/290 (2%)
Query: 224 YLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRK 280
+ + + D+LN T+F T A + G I ++ + S
Sbjct: 64 FDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSIL 123
Query: 281 TAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF-DTKAKLTLPCKGLRSVTCQSVEEIE 339
++ + V Y+E+Y +IRDLL L + + KGL + SV+E+
Sbjct: 124 SSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVY 183
Query: 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQ 399
++G +R A+T N SSRSH+IF++T+ N +TG A +L LVDLAGSE +
Sbjct: 184 EVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAK-SGQLFLVDLAGSEKVG 242
Query: 400 KSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLM 458
K+ A+ L+E +IN SL A+ VI++ GK +++PYRDS LT++LQ+S GGN++T +
Sbjct: 243 KTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTL 302
Query: 459 IANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREK 508
I N P++ ETL TL + RAK IKN +N + + K
Sbjct: 303 IINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAKAK 352
Score = 101 bits (253), Expect = 3e-24
Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDA 87
+IKVV R RP N E ++ + ++ C FTFD
Sbjct: 3 SANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV----------DSKEAQGSFTFDR 52
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM----EGSQMERGIMQ 143
V+ M Q++I++ S++P V+ +L+GYN T+FAYGQTG GK++TM RG++
Sbjct: 53 VFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIP 112
Query: 144 NAFRQIFDFKQKEKRH-KCIVECCYLELYQGKIRDLLNVSRPTL 186
QIF + + V Y+E+Y +IRDLL L
Sbjct: 113 RIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNL 156
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 148 bits (373), Expect = 1e-40
Identities = 69/217 (31%), Positives = 105/217 (48%), Gaps = 5/217 (2%)
Query: 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 327
+ + K + + + E+Y GK+ DLL + K + K L
Sbjct: 117 FQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDL 176
Query: 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKL 387
+ + + EE+ G RK ND SSRSHAI + LK K K+
Sbjct: 177 KILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLK----DINKNTSLGKI 232
Query: 388 NLVDLAGSECLQKSNATD-IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLL 446
+DLAGSE + + + + IN SLLA+ + I + + K +IP+RDS LT++L
Sbjct: 233 AFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVL 292
Query: 447 QDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483
+D F G +K++MIANI P S ++TL TL Y++R K
Sbjct: 293 RDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
Score = 105 bits (262), Expect = 1e-25
Identities = 49/173 (28%), Positives = 78/173 (45%), Gaps = 8/173 (4%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
IKVVVR RP++ E+K ++I + L I ++ + + F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 92 QATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM-----EGSQMERGIMQNA 145
+YEN+++P++ + +G + FAYGQTG+GKT+TM G GI Q A
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 146 FRQIFDFKQKEKRHKCI-VECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYH 197
IF F + + + E+Y GK+ DLL + K +
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVV 173
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 144 bits (364), Expect = 3e-39
Identities = 89/324 (27%), Positives = 139/324 (42%), Gaps = 32/324 (9%)
Query: 188 DTKAKLNIYHGRQSNGTQIFDFK-QKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 246
T +N +++ + FD+ + I ++Y+ ++L F+
Sbjct: 30 STTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQ----HAFEG 85
Query: 247 KAKLTLPCKGLRSVTCQSVEEIENCRKKG----------YKSRKTAKKRHKCIVECCYLE 296
+ ++ + ++G + T VE Y+E
Sbjct: 86 YNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYME 145
Query: 297 LYQGKIRDLLNVSRPTLFDTK--AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAST 354
+Y ++RDLLN + L + L + S +I++ G K R A+T
Sbjct: 146 IYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAAT 205
Query: 355 YFNDYSSRSHAIFIVTLKVLNSKTGKALI---HSKLNLVDLAGSECLQKSNATDIRLKEC 411
N+ SSRSHA+F + + SK++LVDLAGSE + A RLKE
Sbjct: 206 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 265
Query: 412 CEINLSLLAVNKVISSTVAG------------KTYIPYRDSLLTQLLQDSFGGNAKTLMI 459
IN SL + KVIS+ +IPYRDS+LT LL+++ GGN++T M+
Sbjct: 266 ANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMV 325
Query: 460 ANIGPAASTYKETLVTLEYANRAK 483
A + PA Y ETL TL YA+RAK
Sbjct: 326 AALSPADINYDETLSTLRYADRAK 349
Score = 96.6 bits (239), Expect = 2e-22
Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQP-GKARRFTFDAVY 89
++KV VR RP N E + +I++ + + + P+QP + F+FD Y
Sbjct: 2 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 53
Query: 90 GM--------QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ--MER 139
A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q ++
Sbjct: 54 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 113
Query: 140 GIMQNAFRQIFD--FKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ +F VE Y+E+Y ++RDLLN
Sbjct: 114 GIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 156
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 136 bits (343), Expect = 3e-36
Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 271 CRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPCKGL 327
R + ++ +LE+Y + DLL+ + + K + +
Sbjct: 156 VDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNI 215
Query: 328 RSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKL 387
T + + +R TAST N+ SSRSHA+ + L +++ + + +
Sbjct: 216 TEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISV-GSI 274
Query: 388 NLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQ 447
NLVDLAG +S T R+ E IN SL + VI + + + +IPYR+S LT LL
Sbjct: 275 NLVDLAG----SESPKTSTRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLM 330
Query: 448 DSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483
S GGN+KTLM N+ P ++E++ +L +A
Sbjct: 331 PSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVN 366
Score = 103 bits (256), Expect = 1e-24
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 7/261 (2%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+V R RP E D + +++ + + + + F+FD V+
Sbjct: 46 NIRVFCRIRPPLESEENRMCCTWTYHDES----TVELQSIDAQAKSKMGQQIFSFDQVFH 101
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
++Q++I+E V P++ L GYN+ IFAYGQTG+GKT+TM+G G++ +F
Sbjct: 102 PLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLF 160
Query: 151 --DFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFD 208
+ + ++ +LE+Y + DLL+ + + AK N SN T+
Sbjct: 161 DSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETV 220
Query: 209 FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 268
RH + + S + + + V+
Sbjct: 221 LDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLA 280
Query: 269 ENCRKKGYKSRKTAKKRHKCI 289
+ K K ++ +
Sbjct: 281 GSESPKTSTRMTETKNINRSL 301
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 132 bits (333), Expect = 8e-35
Identities = 84/247 (34%), Positives = 129/247 (52%), Gaps = 9/247 (3%)
Query: 285 RHKCIVECCYLELYQGKIRDLLNVSRPT----LFDTKAKLTLPCKGLRSVTCQSVEEIEN 340
+ ++ +ELYQ + DLL + +K + + + V+ + EE++
Sbjct: 119 KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKT 178
Query: 341 CRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQK 400
++G + R T T N+ SSRSH I V ++ N +A+ KL+ VDLAGSE ++K
Sbjct: 179 IIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTN-LQTQAIARGKLSFVDLAGSERVKK 237
Query: 401 SNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIA 460
S + +LKE IN SL A+ VIS+ +G +IPYR+ LT L+ DS GGNAKTLM
Sbjct: 238 SGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFV 297
Query: 461 NIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALEDLAQCK 520
NI PA S ET +L YA+R + I N P+ N ++ ++++ E +
Sbjct: 298 NISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE----VARLKKLVSYWKEQAGRKG 353
Query: 521 MDYEMAE 527
D E+ E
Sbjct: 354 DDEELEE 360
Score = 93.1 bits (230), Expect = 3e-21
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 11/194 (5%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
I+V R RP+ E A N I+ + + KA++ +D V+
Sbjct: 2 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHL---------WKDDKAKQHMYDRVFDG 52
Query: 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFD 151
ATQ +++E + +V + GYNV IFAYGQTG+GKTFT+ G+ G+ A ++F
Sbjct: 53 NATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFR 111
Query: 152 FKQKE-KRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFK 210
+K+ + ++ +ELYQ + DLL + K + +
Sbjct: 112 IMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSIS 171
Query: 211 QKEKRHKCIVECCY 224
E+ I
Sbjct: 172 TYEELKTIIQRGSE 185
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 166
Score = 29.4 bits (65), Expect = 0.82
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 438 RDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVT 475
+ +D+F G + N+ A Y+ TL+T
Sbjct: 128 SMPEYIERFEDAFPGQENPVTFDNMAVAIEAYEATLIT 165
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 27.3 bits (60), Expect = 1.8
Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 12/65 (18%)
Query: 113 GYNVTIFAYGQTGTGKTFTMEGS------------QMERGIMQNAFRQIFDFKQKEKRHK 160
G +T++ + T TF+++ + ++E G+ + ++ + H
Sbjct: 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHC 66
Query: 161 CIVEC 165
+
Sbjct: 67 SLGSY 71
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 27.0 bits (58), Expect = 4.0
Identities = 8/59 (13%), Positives = 13/59 (22%), Gaps = 1/59 (1%)
Query: 109 HMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCY 167
HML T+ G GKT + + + +
Sbjct: 2 HMLKKGMTTVLD-FHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL 59
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 6.2
Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 18/176 (10%)
Query: 116 VTIFAYGQTGTGKT--------------FTMEGSQMERGIMQNAFRQIFDFKQKEKRHKC 161
T++ G +G GKT + F + +E+ +
Sbjct: 20 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRR 79
Query: 162 IVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVE 221
I E L G + +S P D I+ G ++F + V+
Sbjct: 80 IAEVAKLFADAGLVCITSFIS-PYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVK 138
Query: 222 CCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI-ENCRKKGY 276
Y + G+I+ + +L L V V+++ E +++
Sbjct: 139 GLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSC-DVN-DCVQQVVELLQERDI 192
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 26.2 bits (56), Expect = 8.2
Identities = 30/181 (16%), Positives = 47/181 (25%), Gaps = 20/181 (11%)
Query: 116 VTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKI 175
TIF G +GK ++ + Q R + RH+ E + +
Sbjct: 7 FTIFLTGYMNSGKDAI--ARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTN 64
Query: 176 RD------------LLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVEC- 222
V + + S F C
Sbjct: 65 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDK 124
Query: 223 --CYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI-ENCRKKGYKSR 279
Y +G+I+ V P KA L + SV V EI +G+ R
Sbjct: 125 RGIYAAARRGEIKGFTGVDDPYETPEKADLVVDFSKQ-SVR-SIVHEIILVLESQGFLER 182
Query: 280 K 280
+
Sbjct: 183 Q 183
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 26.7 bits (57), Expect = 8.4
Identities = 20/199 (10%), Positives = 43/199 (21%), Gaps = 6/199 (3%)
Query: 80 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER 139
+ + + + ++ + N H T+ G+ GTGKT T+
Sbjct: 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATL--LGRPGTGKTVTLRKLWELY 67
Query: 140 GIMQNA----FRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLNI 195
A + +G RD +
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 196 YHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK 255
+ + + + + + V T+ +
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 256 GLRSVTCQSVEEIENCRKK 274
T + +I R K
Sbjct: 188 RFSPYTKDQIFDILLDRAK 206
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 26.8 bits (58), Expect = 8.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 118 IFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFK 153
+ G TGTGK+ + G+++ I D
Sbjct: 53 LLVNGATGTGKSVLLR-ELAYTGLLRGDRMVIVDPN 87
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus
denitrificans [TaxId: 266]}
Length = 252
Score = 26.3 bits (57), Expect = 9.5
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 449 SFGGNAKTLMIANIGPAASTYKETL------VTLEYANRAKKIKNAPNINFYREDRCHNE 502
F +A+ M+ + A K TL V ++ + A +I +
Sbjct: 6 KFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKF 65
Query: 503 EKMREKYKK 511
E M + +
Sbjct: 66 ENMGAQMVR 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.388
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,005,931
Number of extensions: 93885
Number of successful extensions: 357
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 41
Length of query: 560
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 470
Effective length of database: 1,171,896
Effective search space: 550791120
Effective search space used: 550791120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)