BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7619
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 62/99 (62%), Gaps = 8/99 (8%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA--RRFTFDA 63
E+++VVVRCRPMN E+ A + V+ +D +S++ P+ + FTFDA
Sbjct: 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVK------NPKGTAHEMPKTFTFDA 74
Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
VY A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGT
Sbjct: 75 VYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 113
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 72
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 73 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 109
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 64
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 100
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 74 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 109
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 72
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 73 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 109
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 2 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 57
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 58 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 94
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 16 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 71
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 72 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 108
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 85.5 bits (210), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 17 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 72
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 73 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 109
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+
Sbjct: 19 KNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVF 74
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 75 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 111
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 83.2 bits (204), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVR RP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 74 ASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGT 109
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 79.7 bits (195), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAV 64
+NIKV+VRCRP+N E + + N+I++D + + Q K R FTFDAV
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
Y + I++ S +P+++ +L G+N TIFAYGQTG
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTG 100
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 78.6 bits (192), Expect = 9e-16, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 63/99 (63%), Gaps = 8/99 (8%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQ-PGK-ARRFTFDA 63
E +KVV RCRP++ E A E ++ +D ++++ PR PG+ + FTFDA
Sbjct: 21 EALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLR------NPRAAPGELPKTFTFDA 74
Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
VY + Q ++Y+ +VRP+++ +L G+N T+FAYGQTGT
Sbjct: 75 VYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGT 113
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 7/101 (6%)
Query: 2 KSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTF 61
K ++NI+V VR RP+N ER V+ + ++ ++ +L ++FTF
Sbjct: 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKL-------TKKFTF 71
Query: 62 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
D +G ++ Q ++Y V P++ +L+GYN T+FAYGQTGT
Sbjct: 72 DRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGT 112
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 55/101 (54%), Gaps = 10/101 (9%)
Query: 1 MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFT 60
M S +IKVV R RP N E ++ + ++ C T K Q FT
Sbjct: 1 MSSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTC------TVDSKEAQG----SFT 50
Query: 61 FDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
FD V+ M Q++I++ S++P V+ +L+GYN T+FAYGQTG
Sbjct: 51 FDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 91
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 11/106 (10%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKI--------DTTKKCLSI---QYSTDRLKPRQPGK 55
++KVVVR RP N E+ A V+ + D ++ +S + +T++ ++ K
Sbjct: 11 HMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNK 70
Query: 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
+F FDAV+ +TQ+E++E++ +P++ L+GYN T+ AYG TG
Sbjct: 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATG 116
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 15/100 (15%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKI--DTTKKCLSIQYSTDRLKPRQPGKARRFTFD 62
+++IKVV R RP+N E KA + V+K + + C+SI + + FD
Sbjct: 10 EDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-------------AGKVYLFD 56
Query: 63 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
V+ A+Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 57 KVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSS 96
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 65
++KV VR RP N E + +I++ + +T + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGS--------TTTIVNPKQPKETPKSFSFDYSY 56
Query: 66 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 100
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 65
++KV VR RP N E + +I++ + +T + P+QP + + F+FD Y
Sbjct: 21 SVKVAVRVRPFNSREMSRDSKCIIQMSGS--------TTTIVNPKQPKETPKSFSFDYSY 72
Query: 66 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 73 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 116
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 65
++KV VR RP N E + +I++ + +T + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGS--------TTTIVNPKQPKETPKSFSFDYSY 56
Query: 66 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 100
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 17/104 (16%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 65
++KV VR RP N E + +I++ + +T + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGS--------TTTIVNPKQPKETPKSFSFDYSY 56
Query: 66 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 100
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
++V +R RP+ +P+ H + CL ++ R+ G+ R F F V
Sbjct: 13 VRVALRVRPL-LPKELLHGH--------QSCLQVEPGLGRVTL---GRDRHFGFHVVLAE 60
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A Q +Y+ V+P++ G+N T+FAYGQTG+
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGS 95
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
++V +R RP+ +P+ H + CL ++ R+ G+ R F F V
Sbjct: 13 VRVALRVRPL-LPKELLHGH--------QSCLQVEPGLGRVTL---GRDRHFGFHVVLAE 60
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A Q +Y+ V+P++ G+N T+FAYGQTG+
Sbjct: 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGS 95
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 51 RQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
R + ++ FDA YG ++TQ +IY SV+P++ H+L G N ++ AYG TG
Sbjct: 59 RNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTG 109
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 7 NIKVVVRCRP--MNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGK--ARRFTFD 62
NI+V R RP +N P+ +H+ + K + K S+ + R G+ + F FD
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHIL-IEKFNEAKGAQSLTIN------RNEGRILSYNFQFD 58
Query: 63 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
++ T EI+E +R +V L GYNV IFAYGQTG+
Sbjct: 59 MIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGS 97
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
+ V VR RP+N E ++ + + + TD Q ++ F FD V+
Sbjct: 6 VAVCVRVRPLNSRE-----------ESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHG 54
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
T +YE P+++ + GYN TIFAYGQT +
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTAS 89
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 52.8 bits (125), Expect = 6e-08, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 10/95 (10%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
I+V R RP+N E + ++ TT ++++ P + K ++ +D V+ M
Sbjct: 15 IRVYCRIRPLNEKESSEREKQML---TTVDEFTVEH------PWKDDKRKQHIYDRVFDM 65
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+A+Q +I+E++ + +V + GYNV IFAYGQTG+
Sbjct: 66 RASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGS 99
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 52.0 bits (123), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V +R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 115
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 116 FDQQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGS 152
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 96
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 3 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 58
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 59 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 95
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 96
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 96
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 7/98 (7%)
Query: 7 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 15 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 70
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 71 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 107
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 49.7 bits (117), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFD----- 62
+KV VR RPMN E H + V+ +D K L+ +T+ K G+ + F +D
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILN-PVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 63 ---AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+V A Q +++ ++ + GYN IFAYGQTG+
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGS 104
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 7 NIKVVVRCRPMNVPERKA-HVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
NI+V+ R RP+ + + N + D + + GK F D V+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI--------IHLLHKGKPVSFELDKVF 56
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
QA+Q ++++ V+ +V + G+NV IFAYGQTG
Sbjct: 57 SPQASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTG 91
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NIKV+ R RP+N E + V K Q + +P + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKF---------QGEDTVMIASKP-----YAFDRVFQ 53
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 89
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 48.9 bits (115), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKI-----DTTKKCLSIQYSTDRLKPRQPGKARRFTF 61
NI+V R RP +P ++E+ IK+ D + ++I ++ P F F
Sbjct: 29 NIRVYCRIRP-PLPHEDDNIEH-IKVQPFDDDNGDQGMTINRGNSQVIP--------FKF 78
Query: 62 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
D ++ Q T EI++ V ++ L GYNV IFAYGQTG+
Sbjct: 79 DKIFDQQETNDEIFK-EVGQLIQSSLDGYNVCIFAYGQTGS 118
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NIKV+ R RP+N E + + K Q + +P + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF---------QGEDTVVIASKP-----YAFDRVFQ 53
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 89
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NIKV+ R RP+N E + + K Q + +P + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKF---------QGEDTVVIASKP-----YAFDRVFQ 53
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 89
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 12/96 (12%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIK-IDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
I+V R RP+ E A N I+ +D +++ + L + KA++ +D V+
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVD--------EFTVEHL--WKDDKAKQHMYDRVFD 56
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
ATQ +++E++ + +V + GYNV IFAYGQTG+
Sbjct: 57 GNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGS 91
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 7/98 (7%)
Query: 6 ENIKVVVRCRP-MNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+NI+V R RP + E + ++T + SI +Q F+FD V
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQI-----FSFDQV 113
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ ++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 114 FHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 150
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 102 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 144
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 105 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 147
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPGKARRFTFDA 63
+ I V VR RP+N E +VI I + KCL + + ++ + + + F FD
Sbjct: 50 EHRICVCVRKRPLNKQELAKKEIDVISIPS--KCLLLVHEPKLKVDLTKYLENQAFCFDF 107
Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 108 AFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 146
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 116 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 158
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPGKARRFTFDAVYG 66
I V VR RP+N E +VI + + KCL + + ++ + + + F FD +
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPS--KCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 130
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 166
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQ+G+
Sbjct: 105 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGS 147
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 45.8 bits (107), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPGKARRFTFDAVYG 66
I V VR RP+N E +VI + + KCL + + ++ + + + F FD +
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPS--KCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 58
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 59 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 94
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 54 GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G+ + + FD V TQ ++Y + +V +L GYN TIFAYGQT +
Sbjct: 41 GQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSS 89
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARR--FTFDAVY 65
IKVVVR RP++ E+K ++I T K ++ R K R F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDII---TVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVF 58
Query: 66 GMQATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGT 102
+YEN+++P++ + +G + FAYGQTG+
Sbjct: 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGS 96
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 43.9 bits (102), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F FD + +Q E+Y+ + P+V+ +L G+ T AYGQTGT
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGT 106
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F FD + +Q E+Y+ + P+V+ +L G+ T AYGQTGT
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGT 106
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 21 ERKAHVENVIKID--TTKKCLSIQYSTDRLKPRQPGKARR------FTFDAVYGMQ---- 68
E + + E ++++D T + L + TD R ++RR FTFD +
Sbjct: 53 ELERNAECIVEMDPATERTSLLVPQETDFADARG-ARSRRVLEEKSFTFDKSFWSHNTED 111
Query: 69 ---ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
ATQ +Y++ ++H GY+ IFAYGQTG+
Sbjct: 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGS 148
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 41.6 bits (96), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 53 PGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
P F+FD V+ + Q E++E + +V L GY V IFAYGQTG+
Sbjct: 79 PPPRHDFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGS 127
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
I V VR RP+N E + +VI I +K + + ++ + + + F FD +
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDD 149
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A +Y + RP+V + T FAYGQTG+
Sbjct: 150 SAPNEMVYRFTARPLVETIFERGMATCFAYGQTGS 184
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
F D V A+Q +YE + +V+ L GYN TI YGQTG
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTG 115
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 58 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
RF FD ++ + + ++E + ++ L G NV +FAYGQTG+
Sbjct: 431 RFLFDKIFEREQSNDLVFE-ELSQLIQCSLDGTNVCVFAYGQTGS 474
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,954,309
Number of Sequences: 62578
Number of extensions: 94372
Number of successful extensions: 247
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 56
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)