Query psy7619
Match_columns 102
No_of_seqs 191 out of 1072
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 22:58:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 5.4E-30 1.2E-34 189.4 10.5 94 4-102 47-140 (1041)
2 cd01367 KISc_KIF2_like Kinesin 100.0 2.4E-29 5.2E-34 170.9 11.9 96 6-102 1-96 (322)
3 cd01370 KISc_KIP3_like Kinesin 100.0 5.6E-29 1.2E-33 170.0 11.0 95 7-102 1-99 (338)
4 cd01368 KISc_KIF23_like Kinesi 100.0 1E-28 2.2E-33 169.2 12.1 96 6-102 1-100 (345)
5 cd01371 KISc_KIF3 Kinesin moto 100.0 7.9E-29 1.7E-33 169.0 11.2 93 6-102 1-93 (333)
6 KOG4280|consensus 100.0 6.3E-29 1.4E-33 176.5 9.3 96 3-102 2-97 (574)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.1E-28 8.8E-33 165.8 10.8 86 6-102 1-86 (337)
8 cd01365 KISc_KIF1A_KIF1B Kines 100.0 7.2E-28 1.6E-32 165.5 11.7 93 6-102 1-100 (356)
9 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.1E-28 1.3E-32 165.7 10.8 93 5-102 1-93 (352)
10 KOG0245|consensus 99.9 8.9E-28 1.9E-32 176.8 9.5 91 4-102 2-99 (1221)
11 cd01369 KISc_KHC_KIF5 Kinesin 99.9 3.4E-27 7.3E-32 160.6 11.2 88 5-102 1-88 (325)
12 KOG0240|consensus 99.9 2.4E-27 5.2E-32 166.5 9.3 91 3-102 4-94 (607)
13 cd01376 KISc_KID_like Kinesin 99.9 1E-26 2.2E-31 157.9 11.4 88 7-102 1-92 (319)
14 cd01372 KISc_KIF4 Kinesin moto 99.9 7.5E-27 1.6E-31 159.7 9.5 84 7-102 2-85 (341)
15 cd01374 KISc_CENP_E Kinesin mo 99.9 1.4E-26 2.9E-31 157.4 10.6 85 7-102 1-85 (321)
16 KOG0241|consensus 99.9 8.7E-27 1.9E-31 171.1 8.8 96 5-102 3-105 (1714)
17 KOG0239|consensus 99.9 1.8E-26 3.9E-31 167.7 8.8 92 5-102 313-404 (670)
18 cd01375 KISc_KIF9_like Kinesin 99.9 1E-25 2.3E-30 153.8 10.5 90 7-102 1-92 (334)
19 KOG0242|consensus 99.9 5.6E-26 1.2E-30 165.4 9.2 95 4-102 4-98 (675)
20 PLN03188 kinesin-12 family pro 99.9 1.9E-25 4.1E-30 167.5 9.2 81 5-102 97-177 (1320)
21 cd00106 KISc Kinesin motor dom 99.9 1.1E-24 2.4E-29 148.2 11.5 90 7-102 1-90 (328)
22 cd01366 KISc_C_terminal Kinesi 99.9 1.8E-24 3.8E-29 147.4 11.2 88 5-102 1-89 (329)
23 smart00129 KISc Kinesin motor, 99.9 2.7E-24 5.9E-29 146.7 11.5 90 7-102 1-91 (335)
24 KOG0246|consensus 99.9 6.9E-25 1.5E-29 154.4 8.3 98 4-102 206-303 (676)
25 PF00225 Kinesin: Kinesin moto 99.9 1.7E-22 3.7E-27 137.9 7.6 86 13-102 1-86 (335)
26 KOG0247|consensus 99.8 4.1E-18 8.9E-23 123.2 8.0 93 6-102 31-126 (809)
27 KOG0244|consensus 99.7 7.2E-17 1.6E-21 119.1 6.0 77 14-102 1-77 (913)
28 COG5059 KIP1 Kinesin-like prot 99.7 1.4E-16 3E-21 115.2 7.2 47 56-102 55-101 (568)
29 cd01363 Motor_domain Myosin an 99.4 3.9E-13 8.5E-18 85.4 4.4 28 74-102 8-35 (186)
30 COG5059 KIP1 Kinesin-like prot 89.8 0.018 3.8E-07 42.7 -3.8 44 54-102 350-393 (568)
31 PF00308 Bac_DnaA: Bacterial d 87.8 0.82 1.8E-05 29.8 3.3 43 57-102 3-45 (219)
32 KOG1800|consensus 82.3 1.3 2.7E-05 31.9 2.4 20 82-101 101-120 (468)
33 PF11406 Tachystatin_A: Antimi 77.5 0.52 1.1E-05 22.0 -0.5 14 86-99 5-18 (44)
34 PRK14086 dnaA chromosomal repl 75.2 3.8 8.2E-05 31.1 3.1 44 56-102 282-325 (617)
35 PF06603 UpxZ: UpxZ family of 74.6 1.2 2.6E-05 25.9 0.3 19 81-99 54-72 (106)
36 COG3956 Protein containing tet 72.5 2.6 5.5E-05 29.9 1.6 32 57-88 50-82 (488)
37 KOG2721|consensus 72.4 5.7 0.00012 26.3 3.1 19 82-100 51-69 (260)
38 PF04446 Thg1: tRNAHis guanyly 67.4 6.4 0.00014 23.9 2.4 21 80-100 53-73 (135)
39 PF00319 SRF-TF: SRF-type tran 65.7 5.3 0.00012 20.1 1.6 17 85-101 28-44 (51)
40 PRK08116 hypothetical protein; 64.6 9.3 0.0002 25.8 3.0 45 56-102 79-125 (268)
41 PRK00149 dnaA chromosomal repl 62.0 13 0.00029 26.8 3.6 45 55-102 115-159 (450)
42 PRK14088 dnaA chromosomal repl 61.8 14 0.00031 26.8 3.7 43 56-102 99-141 (440)
43 PRK06893 DNA replication initi 61.7 19 0.00041 23.5 4.0 41 56-102 10-50 (229)
44 TIGR00362 DnaA chromosomal rep 60.1 17 0.00037 25.8 3.9 44 56-102 104-147 (405)
45 PRK06620 hypothetical protein; 59.1 17 0.00037 23.6 3.5 43 56-102 10-55 (214)
46 PF03467 Smg4_UPF3: Smg-4/UPF3 55.5 8.9 0.00019 24.3 1.6 22 1-22 1-22 (176)
47 TIGR01501 MthylAspMutase methy 53.8 20 0.00043 21.8 2.9 24 57-80 107-130 (134)
48 COG2805 PilT Tfp pilus assembl 52.6 16 0.00035 25.7 2.6 24 79-102 113-136 (353)
49 COG2243 CobF Precorrin-2 methy 52.2 34 0.00073 22.9 3.9 44 56-99 57-100 (234)
50 smart00432 MADS MADS domain. 51.7 18 0.0004 18.6 2.2 18 85-102 35-52 (59)
51 PF12444 Sox_N: Sox developmen 50.3 16 0.00034 20.5 1.9 26 71-96 54-79 (84)
52 TIGR02928 orc1/cdc6 family rep 50.2 38 0.00083 23.4 4.2 43 59-102 8-51 (365)
53 cd00120 MADS MADS: MCM1, Agamo 49.1 18 0.0004 18.6 1.9 17 86-102 36-52 (59)
54 PRK09087 hypothetical protein; 48.3 38 0.00081 22.2 3.8 41 56-102 15-55 (226)
55 cd00266 MADS_SRF_like SRF-like 48.1 23 0.00049 19.5 2.3 18 85-102 35-52 (83)
56 KOG0014|consensus 46.8 20 0.00044 22.5 2.3 18 85-102 36-53 (195)
57 PRK00411 cdc6 cell division co 46.4 55 0.0012 22.9 4.6 43 59-102 23-66 (394)
58 PLN00017 photosystem I reactio 45.8 54 0.0012 18.4 3.6 34 68-102 39-79 (90)
59 COG1474 CDC6 Cdc6-related prot 45.4 42 0.00092 23.8 3.9 31 72-102 23-53 (366)
60 PF07755 DUF1611: Protein of u 40.5 21 0.00045 24.8 1.7 35 64-101 117-153 (301)
61 PRK12377 putative replication 40.2 67 0.0015 21.5 4.0 42 59-102 71-112 (248)
62 PRK07952 DNA replication prote 40.1 73 0.0016 21.3 4.2 43 58-102 68-110 (244)
63 PRK14087 dnaA chromosomal repl 39.2 51 0.0011 24.1 3.6 42 58-102 111-152 (450)
64 PRK02261 methylaspartate mutas 37.4 38 0.00081 20.5 2.3 23 56-78 108-130 (137)
65 PF03451 HELP: HELP motif; In 37.1 74 0.0016 17.4 4.3 14 4-17 1-14 (77)
66 TIGR02698 CopY_TcrY copper tra 36.8 64 0.0014 19.3 3.2 29 63-91 61-89 (130)
67 COG1484 DnaC DNA replication p 36.5 80 0.0017 21.1 4.0 43 57-102 74-116 (254)
68 PF14784 ECIST_Cterm: C-termin 35.2 23 0.0005 21.3 1.1 16 87-102 81-96 (126)
69 PF04517 Microvir_lysis: Micro 34.9 17 0.00036 17.4 0.4 9 11-19 20-28 (42)
70 TIGR03420 DnaA_homol_Hda DnaA 33.8 97 0.0021 19.7 4.0 41 56-102 9-49 (226)
71 PF03965 Penicillinase_R: Peni 33.3 62 0.0013 18.6 2.7 30 62-91 59-88 (115)
72 COG2910 Putative NADH-flavin r 33.2 36 0.00078 22.3 1.8 29 69-100 45-73 (211)
73 PF10042 DUF2278: Uncharacteri 31.8 80 0.0017 20.7 3.3 27 71-99 117-143 (206)
74 PF09518 RE_HindIII: HindIII r 31.7 40 0.00087 23.5 1.9 33 64-96 55-89 (311)
75 PTZ00112 origin recognition co 31.6 1E+02 0.0023 25.4 4.3 32 70-102 759-792 (1164)
76 COG0059 IlvC Ketol-acid reduct 31.4 61 0.0013 22.9 2.8 22 64-85 80-101 (338)
77 COG0593 DnaA ATPase involved i 30.7 79 0.0017 23.0 3.4 46 54-102 79-124 (408)
78 cd02072 Glm_B12_BD B12 binding 30.7 56 0.0012 19.7 2.3 22 57-78 105-126 (128)
79 PF07796 DUF1638: Protein of u 30.2 1.3E+02 0.0028 18.6 3.9 23 79-101 18-40 (166)
80 PF04019 DUF359: Protein of un 30.2 48 0.001 19.8 1.9 18 84-101 78-95 (121)
81 PF15408 PH_7: Pleckstrin homo 29.4 46 0.001 18.8 1.6 23 79-101 46-73 (104)
82 PF06510 DUF1102: Protein of u 29.3 1.3E+02 0.0028 18.7 3.6 14 53-66 45-58 (146)
83 KOG1547|consensus 28.9 1.1E+02 0.0024 21.1 3.6 28 75-102 29-57 (336)
84 TIGR00251 conserved hypothetic 28.7 1.1E+02 0.0025 17.0 3.3 18 2-19 2-19 (87)
85 PRK08084 DNA replication initi 28.6 1.2E+02 0.0027 19.8 3.8 41 56-102 16-56 (235)
86 KOG0056|consensus 28.0 50 0.0011 25.2 2.0 29 66-94 636-668 (790)
87 KOG3957|consensus 27.5 36 0.00078 24.2 1.2 12 91-102 105-116 (387)
88 PRK05642 DNA replication initi 26.8 1.2E+02 0.0027 19.8 3.6 39 57-102 14-56 (234)
89 PRK06526 transposase; Provisio 26.5 82 0.0018 21.1 2.7 33 65-102 77-109 (254)
90 COG1909 Uncharacterized protei 26.4 56 0.0012 20.7 1.8 15 87-101 126-140 (167)
91 PTZ00454 26S protease regulato 26.3 1.2E+02 0.0026 21.9 3.7 45 58-102 141-190 (398)
92 PF11693 DUF2990: Protein of u 25.9 73 0.0016 16.8 1.9 31 60-91 14-44 (64)
93 PF02352 Decorin_bind: Decorin 25.8 52 0.0011 20.1 1.5 34 69-102 6-39 (140)
94 PRK08903 DnaA regulatory inact 25.4 1.6E+02 0.0035 18.8 3.9 42 56-102 12-53 (227)
95 PF08796 DUF1797: Protein of u 25.1 1.2E+02 0.0026 16.2 2.7 28 28-64 29-56 (67)
96 PRK12422 chromosomal replicati 25.0 1.4E+02 0.0031 21.8 3.9 45 55-102 104-152 (445)
97 COG1348 NifH Nitrogenase subun 24.9 62 0.0013 22.1 1.9 20 66-85 230-249 (278)
98 PF15062 ARL6IP6: Haemopoietic 24.5 9.7 0.00021 21.2 -1.6 21 80-100 24-44 (85)
99 PF00590 TP_methylase: Tetrapy 24.4 1.7E+02 0.0036 18.4 3.8 29 72-100 57-87 (210)
100 PF14909 SPATA6: Spermatogenes 24.3 1.1E+02 0.0025 18.8 2.8 23 56-78 47-69 (140)
101 cd03738 SOCS_SOCS4 SOCS (suppr 23.9 37 0.0008 17.5 0.6 13 9-21 42-54 (56)
102 COG3245 CycB Cytochrome c5 [En 23.4 45 0.00098 20.0 0.9 14 79-92 86-99 (126)
103 TIGR01467 cobI_cbiL precorrin- 23.1 2E+02 0.0044 18.6 4.1 31 71-101 72-102 (230)
104 PF13252 DUF4043: Protein of u 22.7 41 0.00089 23.8 0.8 22 80-101 270-291 (341)
105 cd00265 MADS_MEF2_like MEF2 (m 22.5 68 0.0015 17.3 1.5 16 86-101 36-51 (77)
106 PF00670 AdoHcyase_NAD: S-aden 22.5 56 0.0012 20.6 1.3 19 83-101 17-35 (162)
107 PF09178 DUF1945: Domain of un 22.3 52 0.0011 16.2 0.9 7 12-18 41-47 (51)
108 PRK10613 hypothetical protein; 22.2 66 0.0014 17.4 1.3 17 67-83 53-69 (74)
109 PF03193 DUF258: Protein of un 21.7 1.2E+02 0.0026 19.0 2.6 21 80-102 26-46 (161)
110 PRK06835 DNA replication prote 21.7 1.7E+02 0.0036 20.6 3.6 29 72-102 166-194 (329)
111 PF04084 ORC2: Origin recognit 21.6 1.8E+02 0.0039 20.4 3.7 17 82-98 47-63 (326)
112 COG1162 Predicted GTPases [Gen 21.5 96 0.0021 21.7 2.3 19 81-101 156-174 (301)
113 PRK01530 hypothetical protein; 21.3 95 0.0021 18.1 2.0 20 2-21 8-27 (105)
114 PF10769 DUF2594: Protein of u 21.3 78 0.0017 17.1 1.5 17 67-83 53-69 (74)
115 PRK01310 hypothetical protein; 21.1 72 0.0016 18.5 1.5 19 3-21 7-25 (104)
116 PRK06921 hypothetical protein; 20.8 2E+02 0.0043 19.4 3.7 24 79-102 102-128 (266)
117 PF06048 DUF927: Domain of unk 20.6 2.1E+02 0.0047 19.4 3.9 26 76-102 179-204 (286)
118 PRK08939 primosomal protein Dn 20.5 1.7E+02 0.0037 20.2 3.5 43 59-102 124-167 (306)
119 PRK05576 cobalt-precorrin-2 C( 20.4 1.8E+02 0.004 18.9 3.5 30 72-101 73-102 (229)
120 COG3829 RocR Transcriptional r 20.1 96 0.0021 23.6 2.2 42 55-102 238-279 (560)
121 PF00437 T2SE: Type II/IV secr 20.0 1E+02 0.0022 20.4 2.2 23 79-102 116-138 (270)
122 PF07991 IlvN: Acetohydroxy ac 20.0 63 0.0014 20.5 1.1 21 64-84 66-86 (165)
123 PRK04021 hypothetical protein; 20.0 79 0.0017 17.9 1.4 20 2-21 3-22 (92)
No 1
>KOG0243|consensus
Probab=99.97 E-value=5.4e-30 Score=189.37 Aligned_cols=94 Identities=41% Similarity=0.761 Sum_probs=82.8
Q ss_pred CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619 4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 83 (102)
Q Consensus 4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v 83 (102)
.+.||+|+|||||++.+|....+..+|.+++..+.|.+...-. .....+.|+||+||+|.+.|++||+..+.|+|
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~-----sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i 121 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA-----SKQIDKTFTFDKVFGPESQQEDLYDQAVSPII 121 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc-----cccccceeecceeeCcchhHHHHHHHHHHHHH
Confidence 4579999999999999999999999999998666677765421 22257899999999999999999999999999
Q ss_pred HHhhCcccEEEEEeccCCC
Q psy7619 84 NHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 84 ~~~l~G~n~~i~aYGqTgS 102 (102)
..+++|||||||||||||+
T Consensus 122 ~eVl~GyNCTIFAYGQTGT 140 (1041)
T KOG0243|consen 122 KEVLEGYNCTIFAYGQTGT 140 (1041)
T ss_pred HHHhccCCceEEEecCCCC
Confidence 9999999999999999996
No 2
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.96 E-value=2.4e-29 Score=170.92 Aligned_cols=96 Identities=29% Similarity=0.522 Sum_probs=83.7
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHH
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~ 85 (102)
.+|+|+|||||+.+.|...+..+++.+++. .++.+..+............+.|.||+||+++++|++||+.+++|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 479999999999999988777888888765 6788887766544434445789999999999999999999999999999
Q ss_pred hhCcccEEEEEeccCCC
Q psy7619 86 MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTgS 102 (102)
+++|+|+||||||||||
T Consensus 80 ~~~G~n~~i~ayGqtGS 96 (322)
T cd01367 80 VFEGGVATCFAYGQTGS 96 (322)
T ss_pred HhCCCceEEEeccCCCC
Confidence 99999999999999998
No 3
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.96 E-value=5.6e-29 Score=170.03 Aligned_cols=95 Identities=35% Similarity=0.655 Sum_probs=78.6
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCc----CCCCCCCceeeecceeeCCCCChHHHHHHhHHHH
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRL----KPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~ 82 (102)
+|+|+|||||+..+|...+...+|.+.++ ..+.+.++.... ........+.|.||+||+++++|++||+.+++|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 69999999999999988888899988755 444443332211 1123445789999999999999999999999999
Q ss_pred HHHhhCcccEEEEEeccCCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTgS 102 (102)
|+.+++|||+||||||||||
T Consensus 80 v~~~~~G~n~~i~ayGqtGS 99 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGA 99 (338)
T ss_pred HHHHHCCCCceEEeeCCCCC
Confidence 99999999999999999997
No 4
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.96 E-value=1e-28 Score=169.19 Aligned_cols=96 Identities=27% Similarity=0.517 Sum_probs=81.9
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCC----CCCCCceeeecceeeCCCCChHHHHHHhHHH
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKP----RQPGKARRFTFDAVYGMQATQTEIYENSVRP 81 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~----~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~ 81 (102)
++|+|+|||||+...|...+..+++.+.+ ...+.+..|...... ......+.|.||+||+++++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVIN-STTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcC-CCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 47999999999999998777788888764 567888777653221 2345678999999999999999999999999
Q ss_pred HHHHhhCcccEEEEEeccCCC
Q psy7619 82 MVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 82 ~v~~~l~G~n~~i~aYGqTgS 102 (102)
+|+.+++|+|+||||||||||
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGS 100 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNS 100 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCC
Confidence 999999999999999999998
No 5
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.96 E-value=7.9e-29 Score=169.03 Aligned_cols=93 Identities=43% Similarity=0.794 Sum_probs=85.0
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHH
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~ 85 (102)
++|+|+||+||++..|...+...++.+++++.++.+..|... .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999998888889999988899999877642 3456789999999999999999999999999999
Q ss_pred hhCcccEEEEEeccCCC
Q psy7619 86 MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTgS 102 (102)
+++|+|+||||||||||
T Consensus 77 ~~~G~n~~i~ayG~tgS 93 (333)
T cd01371 77 VLEGYNGTIFAYGQTGT 93 (333)
T ss_pred HhCCCceeEEecCCCCC
Confidence 99999999999999997
No 6
>KOG4280|consensus
Probab=99.96 E-value=6.3e-29 Score=176.53 Aligned_cols=96 Identities=40% Similarity=0.726 Sum_probs=86.5
Q ss_pred CCCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHH
Q psy7619 3 SYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82 (102)
Q Consensus 3 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~ 82 (102)
+...+++|++|+||++..+.......++.++.....+.+.++... ....++.|+||+||+++++|++||+.++.|+
T Consensus 2 ~~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~l 77 (574)
T KOG4280|consen 2 SPACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG----IEGKPKSFTFDAVFDSDSTQDDVYQETVAPL 77 (574)
T ss_pred CcccceeEEEeecCCCchhhhhhhccccccccccceeeecCCccc----ccCCCCCceeeeeecCCCCHHHHHHHHhHHH
Confidence 456799999999999999998888889999988888888877653 3456777999999999999999999999999
Q ss_pred HHHhhCcccEEEEEeccCCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTgS 102 (102)
|+.+|+||||||||||||||
T Consensus 78 V~svl~GyNgtvFaYGQTGs 97 (574)
T KOG4280|consen 78 VESVLEGYNGTVFAYGQTGS 97 (574)
T ss_pred HHHHhcccCceEEEeccCCC
Confidence 99999999999999999997
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.95 E-value=4.1e-28 Score=165.75 Aligned_cols=86 Identities=37% Similarity=0.568 Sum_probs=71.8
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHH
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~ 85 (102)
.+|+|+|||||+...|...+...++...+++ .+.+.. .+.+.|.||+||+++++|++||+.+++|+|+.
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~-~~~~~~----------~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~ 69 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSD-TLVWHS----------HPPRMFTFDHVADSNTNQEDVFQSVGKPLVED 69 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCC-cEEeeC----------CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHH
Confidence 4799999999999988766666666665443 333321 12578999999999999999999999999999
Q ss_pred hhCcccEEEEEeccCCC
Q psy7619 86 MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTgS 102 (102)
+++|||+||||||||||
T Consensus 70 ~~~G~n~ti~aYGqTGS 86 (337)
T cd01373 70 CLSGYNGSIFAYGQTGS 86 (337)
T ss_pred HhCCCceeEEEeCCCCC
Confidence 99999999999999997
No 8
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.95 E-value=7.2e-28 Score=165.55 Aligned_cols=93 Identities=33% Similarity=0.625 Sum_probs=80.7
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCC-------CChHHHHHHh
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-------ATQTEIYENS 78 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~-------~sq~~vy~~~ 78 (102)
++|+|+||+||++..|...+...++.+.+ ..+.+..+.... ......+.|.||+||+++ ++|++||+.+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~~--~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~ 76 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAAD--ATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDL 76 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCccc--ccccCceEEECCeEecccCCCCCCCCCHHHHHHHH
Confidence 48999999999999999888888888875 677777765311 123457889999999999 9999999999
Q ss_pred HHHHHHHhhCcccEEEEEeccCCC
Q psy7619 79 VRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 79 ~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
+.|+|+.+++|+|+||||||||||
T Consensus 77 ~~p~v~~~l~G~n~~i~ayGqtGS 100 (356)
T cd01365 77 GRELLDHAFEGYNVCLFAYGQTGS 100 (356)
T ss_pred HHHHHHHHhCCCceEEEEecCCCC
Confidence 999999999999999999999997
No 9
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.95 E-value=6.1e-28 Score=165.68 Aligned_cols=93 Identities=43% Similarity=0.764 Sum_probs=82.6
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
+.+|+|+||+||+...|...+...++.+..+.+.+.+..+.. .....+.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~ 75 (352)
T cd01364 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILD 75 (352)
T ss_pred CCCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHH
Confidence 358999999999999998888888999988778887776543 334678899999999999999999999999999
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+++|+|+||||||||||
T Consensus 76 ~~~~G~n~~i~ayG~tgS 93 (352)
T cd01364 76 EVLMGYNCTIFAYGQTGT 93 (352)
T ss_pred HHhCCCeEEEEECCCCCC
Confidence 999999999999999997
No 10
>KOG0245|consensus
Probab=99.95 E-value=8.9e-28 Score=176.77 Aligned_cols=91 Identities=37% Similarity=0.652 Sum_probs=77.0
Q ss_pred CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCC-------CChHHHHH
Q psy7619 4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-------ATQTEIYE 76 (102)
Q Consensus 4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~-------~sq~~vy~ 76 (102)
+..+|+|+|||||++.+|....+.+++.+.+.. +++..|.. ......|+||+.||.+ ++|+.||+
T Consensus 2 ~~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~--ttii~~~~------~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYe 73 (1221)
T KOG0245|consen 2 EGSSVKVAVRVRPFNAREKSRDAKCVVQMQGNT--TTIINPKG------SKDAPKFTFDYSYWSHDSEDPHFASQKQVYE 73 (1221)
T ss_pred CCCceEEEEEeccchhhhhhcccceEEEecCCc--eeeecCCC------cccCCceecceeeecCCCCCCchhhHHHHHH
Confidence 467999999999999999999999999998654 44444442 1223349999999764 78999999
Q ss_pred HhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 77 NSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 77 ~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
.++.++++.+++|||+||||||||||
T Consensus 74 dlg~~mL~~AfEGYN~ClFAYGQTGS 99 (1221)
T KOG0245|consen 74 DLGREMLDHAFEGYNVCLFAYGQTGS 99 (1221)
T ss_pred HHhHHHHHHHhcccceEEEEeccCCC
Confidence 99999999999999999999999998
No 11
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.95 E-value=3.4e-27 Score=160.56 Aligned_cols=88 Identities=41% Similarity=0.690 Sum_probs=78.2
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
.++|+|+||+||+...|...+...++.+.+. .++.+..+ ...+.|.||+||+++++|++||+.++.|+|+
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~---------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~ 70 (325)
T cd01369 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGS---------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVD 70 (325)
T ss_pred CCCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCC---------CCceEEEcCeEECCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999977778888888665 67777654 2467899999999999999999999999999
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+++|+|+||||||||||
T Consensus 71 ~~~~G~n~~i~ayG~tgS 88 (325)
T cd01369 71 DVLNGYNGTIFAYGQTGS 88 (325)
T ss_pred HHHcCccceEEEeCCCCC
Confidence 999999999999999997
No 12
>KOG0240|consensus
Probab=99.95 E-value=2.4e-27 Score=166.49 Aligned_cols=91 Identities=35% Similarity=0.615 Sum_probs=78.9
Q ss_pred CCCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHH
Q psy7619 3 SYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82 (102)
Q Consensus 3 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~ 82 (102)
++..+|+|+||+||++..|...+...+....+...++.+.... ..+.|.||+||+|+++|++||+.++.|+
T Consensus 4 ~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~---------~~~~y~FDrVF~pnatQe~Vy~~~a~~I 74 (607)
T KOG0240|consen 4 SAECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTK---------ETKTYVFDRVFSPNATQEDVYEFAAKPI 74 (607)
T ss_pred CCCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEeccc---------ccccceeeeecCCCccHHHHHHHHHHHH
Confidence 3678999999999999999988887777666645666665322 2388999999999999999999999999
Q ss_pred HHHhhCcccEEEEEeccCCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTgS 102 (102)
|+.+|.|||+||||||||||
T Consensus 75 v~dVL~GYNGTvfaYGqT~s 94 (607)
T KOG0240|consen 75 VDDVLLGYNGTVFAYGQTGS 94 (607)
T ss_pred HHHHhcccceeEEEecCCCC
Confidence 99999999999999999997
No 13
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.94 E-value=1e-26 Score=157.92 Aligned_cols=88 Identities=39% Similarity=0.758 Sum_probs=72.2
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEE-cCCC---cEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHH
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKI-DTTK---KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~-~~~~---~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~ 82 (102)
+|+|+|||||+.+.|. +...++.+ +.+. .++.+.+|.. ...++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN------RGETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC------CCCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 6899999999998883 23344444 3322 4677776642 345788999999999999999999999999
Q ss_pred HHHhhCcccEEEEEeccCCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTgS 102 (102)
|+.+++|+|+||||||||||
T Consensus 73 v~~~~~G~n~~i~ayG~tgS 92 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGA 92 (319)
T ss_pred HHHHhCCCceEEEEECCCCC
Confidence 99999999999999999997
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.94 E-value=7.5e-27 Score=159.70 Aligned_cols=84 Identities=32% Similarity=0.621 Sum_probs=75.7
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHHh
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 86 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~ 86 (102)
+|+|+||+||+...|...+...++.+.+.+..+.+.. .+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999998877777888877766666532 5789999999999999999999999999999
Q ss_pred hCcccEEEEEeccCCC
Q psy7619 87 LHGYNVTIFAYGQTGT 102 (102)
Q Consensus 87 l~G~n~~i~aYGqTgS 102 (102)
++|+|+||||||||||
T Consensus 70 ~~G~n~~i~ayG~tgS 85 (341)
T cd01372 70 FEGYNATVLAYGQTGS 85 (341)
T ss_pred hCCCccceeeecCCCC
Confidence 9999999999999997
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.94 E-value=1.4e-26 Score=157.40 Aligned_cols=85 Identities=44% Similarity=0.705 Sum_probs=74.6
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHHh
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 86 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~ 86 (102)
+|+|+||+||+...|. .+..++|.++.+ .++.+..+ ...+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~-~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~ 69 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDND-NTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSA 69 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCC-CEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999998887 345678888765 56766544 347889999999999999999999999999999
Q ss_pred hCcccEEEEEeccCCC
Q psy7619 87 LHGYNVTIFAYGQTGT 102 (102)
Q Consensus 87 l~G~n~~i~aYGqTgS 102 (102)
++|+|+||||||||||
T Consensus 70 l~G~n~~i~ayG~tgS 85 (321)
T cd01374 70 LEGYNGTIFAYGQTSS 85 (321)
T ss_pred HCCCceeEEeecCCCC
Confidence 9999999999999997
No 16
>KOG0241|consensus
Probab=99.94 E-value=8.7e-27 Score=171.07 Aligned_cols=96 Identities=30% Similarity=0.540 Sum_probs=81.7
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCC-------CChHHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-------ATQTEIYEN 77 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~-------~sq~~vy~~ 77 (102)
..+|||+|||||++.+|.+...+|++.++.....+.+.+|.... .....+++|.||++|++. +.|+.||+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~--~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKI--GESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccc--cccCCCceeecccccccCCccccccccchhHHHh
Confidence 67999999999999999999999999999765544444333322 233678999999999763 789999999
Q ss_pred hHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 78 SVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 78 ~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
++..+|+.+|+|||+||||||||||
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGs 105 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGS 105 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCC
Confidence 9999999999999999999999997
No 17
>KOG0239|consensus
Probab=99.94 E-value=1.8e-26 Score=167.68 Aligned_cols=92 Identities=35% Similarity=0.609 Sum_probs=73.1
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
.+||+|+|||||+.+.+.......++..+.. ..+.+..|.... ....+.|.||+||+|.++|++||+++ .|+|.
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~f~fdkVf~p~~sQ~~VF~e~-~~lv~ 386 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDKGD----KLEPQSFKFDKVFGPLASQDDVFEEV-SPLVQ 386 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCc-ceeEeecCCCCC----CCccccceeeeecCCcccHHHHHHHH-HHHHH
Confidence 5899999999999988876544444444433 446666555421 22233699999999999999999996 99999
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+|+|||.||||||||||
T Consensus 387 S~lDGYnVCIFAYGQTGS 404 (670)
T KOG0239|consen 387 SALDGYNVCIFAYGQTGS 404 (670)
T ss_pred HHhcCcceeEEEecccCC
Confidence 999999999999999997
No 18
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.93 E-value=1e-25 Score=153.77 Aligned_cols=90 Identities=39% Similarity=0.644 Sum_probs=75.8
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCC--CCCCCceeeecceeeCCCCChHHHHHHhHHHHHH
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKP--RQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
.|||+||+||+...+. ..+.+.+++..+.+..|...... .+....+.|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 4899999999986332 23667788888888887774332 24456788999999999 9999999999999999
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+++|+|+||||||||||
T Consensus 75 ~~~~G~n~~i~ayG~tgS 92 (334)
T cd01375 75 SALDGYNGTIFAYGQTGA 92 (334)
T ss_pred HHhCCCccceeeecCCCC
Confidence 999999999999999997
No 19
>KOG0242|consensus
Probab=99.93 E-value=5.6e-26 Score=165.43 Aligned_cols=95 Identities=32% Similarity=0.534 Sum_probs=75.8
Q ss_pred CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619 4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 83 (102)
Q Consensus 4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v 83 (102)
...+|.|+||+||++..+...+..+.|.+..+...+....+.... ...+..|.||+||+++++|++||+..++|+|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv 79 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPE----KSKPEKYEFDRVFGEESTQEDVYERTTKPLL 79 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccc----cccccceeeeeecCCCCCHHHHHHhccHHHH
Confidence 356899999999999987677777788877654333322222111 1116789999999999999999999999999
Q ss_pred HHhhCcccEEEEEeccCCC
Q psy7619 84 NHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 84 ~~~l~G~n~~i~aYGqTgS 102 (102)
+.+|+|+||||||||||||
T Consensus 80 ~~~l~G~N~TVFAYG~TgS 98 (675)
T KOG0242|consen 80 LSVLEGFNATVFAYGQTGS 98 (675)
T ss_pred HHHhcCcccceeeecCCCC
Confidence 9999999999999999997
No 20
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.92 E-value=1.9e-25 Score=167.48 Aligned_cols=81 Identities=38% Similarity=0.678 Sum_probs=66.5
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
..+|+|+|||||++..|. +...++.+. ...+.+. .+.|.||+||+++++|++||+.++.|+|+
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s--~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~ 159 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQKMS--NDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPLVE 159 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEEcC--CCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 469999999999998753 333333333 3345442 36799999999999999999999999999
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+++|||+||||||||||
T Consensus 160 svLdGyNaTIFAYGQTGS 177 (1320)
T PLN03188 160 NCLAGFNSSVFAYGQTGS 177 (1320)
T ss_pred HHhcCCcceeecCCCCCC
Confidence 999999999999999998
No 21
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.92 E-value=1.1e-24 Score=148.23 Aligned_cols=90 Identities=43% Similarity=0.758 Sum_probs=76.9
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHHh
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 86 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~ 86 (102)
+|+|+||+||+...| ..+...++.+++. +++.+..+... .....+.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~ 74 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESV 74 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHH
Confidence 589999999998776 3455677888765 67877766542 33567899999999999999999999999999999
Q ss_pred hCcccEEEEEeccCCC
Q psy7619 87 LHGYNVTIFAYGQTGT 102 (102)
Q Consensus 87 l~G~n~~i~aYGqTgS 102 (102)
++|+|+||||||+|||
T Consensus 75 ~~G~~~~i~~yG~tgS 90 (328)
T cd00106 75 LEGYNGTIFAYGQTGS 90 (328)
T ss_pred hCCCceeEEEecCCCC
Confidence 9999999999999997
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.92 E-value=1.8e-24 Score=147.44 Aligned_cols=88 Identities=38% Similarity=0.697 Sum_probs=73.7
Q ss_pred CCceEEEEEeCCCChhhhhcCCccEEEEcCCC-cEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTK-KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 83 (102)
Q Consensus 5 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v 83 (102)
.++|+|+||+||+...|. ....+++.+.+.+ ..+.+..+ ....+.|.||+||+++++|++||+.+ .|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~v-~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEEV-SPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHHH-HHHH
Confidence 468999999999998876 3445667777654 66666543 24578899999999999999999985 9999
Q ss_pred HHhhCcccEEEEEeccCCC
Q psy7619 84 NHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 84 ~~~l~G~n~~i~aYGqTgS 102 (102)
+.+++|+|+||||||+|||
T Consensus 71 ~~~~~G~~~~i~ayG~tgS 89 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGS 89 (329)
T ss_pred HHHhCCCceEEEEeCCCCC
Confidence 9999999999999999997
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.92 E-value=2.7e-24 Score=146.74 Aligned_cols=90 Identities=42% Similarity=0.803 Sum_probs=78.9
Q ss_pred ceEEEEEeCCCChhhhhcCCccEEEEcCCC-cEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHH
Q psy7619 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTK-KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 7 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~-~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~ 85 (102)
+|+|+||+||+...|...+..+++.+.+.+ ..+.+..+. .....+.|.||+||+++++|++||+.++.|+|+.
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 589999999999999888888888886553 467776654 2356788999999999999999999999999999
Q ss_pred hhCcccEEEEEeccCCC
Q psy7619 86 MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTgS 102 (102)
+++|+|+||||||+|||
T Consensus 75 ~~~G~~~~i~~yG~tgS 91 (335)
T smart00129 75 VLEGYNATIFAYGQTGS 91 (335)
T ss_pred HhcCCceeEEEeCCCCC
Confidence 99999999999999997
No 24
>KOG0246|consensus
Probab=99.92 E-value=6.9e-25 Score=154.41 Aligned_cols=98 Identities=29% Similarity=0.471 Sum_probs=89.1
Q ss_pred CCCceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHH
Q psy7619 4 YDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 83 (102)
Q Consensus 4 ~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v 83 (102)
+..+|.||||-||++..|......+++.+.. +..+.++.|.........-..+.|.||++||+.++++.||+.+++|||
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps-~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV 284 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPS-KNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLV 284 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEeccc-cceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHH
Confidence 5678999999999999999998889998854 467888888877766667778899999999999999999999999999
Q ss_pred HHhhCcccEEEEEeccCCC
Q psy7619 84 NHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 84 ~~~l~G~n~~i~aYGqTgS 102 (102)
..+|+|--+|+||||||||
T Consensus 285 ~~IF~~G~ATCFAYGQTGS 303 (676)
T KOG0246|consen 285 KTIFEGGMATCFAYGQTGS 303 (676)
T ss_pred HHHHhCCceeeeeeccCCC
Confidence 9999999999999999998
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.88 E-value=1.7e-22 Score=137.86 Aligned_cols=86 Identities=40% Similarity=0.734 Sum_probs=67.2
Q ss_pred EeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccE
Q psy7619 13 RCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNV 92 (102)
Q Consensus 13 RvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~ 92 (102)
||||++..|...+....+.+............. .......+.|.||+||+++++|++||+.++.|+|+.+|+|+|+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~ 76 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVN----SNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNA 76 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETT----EEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCcccccccccc----ccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCce
Confidence 999999999998888777665321112111111 1134567899999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q psy7619 93 TIFAYGQTGT 102 (102)
Q Consensus 93 ~i~aYGqTgS 102 (102)
||||||+|||
T Consensus 77 ~i~ayG~tgS 86 (335)
T PF00225_consen 77 TIFAYGQTGS 86 (335)
T ss_dssp EEEEEESTTS
T ss_pred EEEeeccccc
Confidence 9999999997
No 26
>KOG0247|consensus
Probab=99.75 E-value=4.1e-18 Score=123.17 Aligned_cols=93 Identities=26% Similarity=0.585 Sum_probs=75.4
Q ss_pred CceEEEEEeCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCC---CCCCCceeeecceeeCCCCChHHHHHHhHHHH
Q psy7619 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKP---RQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82 (102)
Q Consensus 6 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~---~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~ 82 (102)
+.+.|++|+||+.+. .+...++.+.. ...|.+..|...... +.....+.|.|.+||+++++|.+||+.++.|+
T Consensus 31 d~v~v~~rvrP~~~~---~~~~g~l~v~n-~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~pl 106 (809)
T KOG0247|consen 31 DPVLVVCRVRPLSDA---SEDEGCLRVIN-EETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPL 106 (809)
T ss_pred cchheeEeecCCCCC---ccccceEEEec-cceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHH
Confidence 578999999999862 33344555554 356777766664432 34566789999999999999999999999999
Q ss_pred HHHhhCcccEEEEEeccCCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTgS 102 (102)
|.+++.|.|..+|.||-|||
T Consensus 107 V~dlLkgqn~LlFTyGVTgS 126 (809)
T KOG0247|consen 107 VKDLLKGQNSLLFTYGVTGS 126 (809)
T ss_pred HHHHHcccceeEEEeeccCC
Confidence 99999999999999999998
No 27
>KOG0244|consensus
Probab=99.67 E-value=7.2e-17 Score=119.10 Aligned_cols=77 Identities=34% Similarity=0.629 Sum_probs=70.6
Q ss_pred eCCCChhhhhcCCccEEEEcCCCcEEEEeccCCCcCCCCCCCceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEE
Q psy7619 14 CRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVT 93 (102)
Q Consensus 14 vRP~~~~e~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~ 93 (102)
+||+...|...++..++.+.+...++.+. ....|+||+||+....|.++|+.++.|+++.+++|||+|
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig------------~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG------------KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec------------CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 69999999999999888877777777764 356799999999999999999999999999999999999
Q ss_pred EEEeccCCC
Q psy7619 94 IFAYGQTGT 102 (102)
Q Consensus 94 i~aYGqTgS 102 (102)
++|||||||
T Consensus 69 vlaygQtgs 77 (913)
T KOG0244|consen 69 VLAYGQTGS 77 (913)
T ss_pred eeeecccCC
Confidence 999999997
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.67 E-value=1.4e-16 Score=115.21 Aligned_cols=47 Identities=47% Similarity=1.012 Sum_probs=45.6
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...|.||+||++.++|++||+..++|+++.++.||||||||||||||
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgs 101 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGS 101 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCC
Confidence 67799999999999999999999999999999999999999999997
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.39 E-value=3.9e-13 Score=85.35 Aligned_cols=28 Identities=50% Similarity=1.012 Sum_probs=27.4
Q ss_pred HHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 74 IYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 74 vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
||+.++ |+|+.+++|+|+||||||||||
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGs 35 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGS 35 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCC
Confidence 999999 9999999999999999999997
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=89.82 E-value=0.018 Score=42.72 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=35.4
Q ss_pred CCceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 54 GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 54 ~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
.....|.||.++.....+..++... ..+++..++| +++|+++++
T Consensus 350 ~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~ 393 (568)
T COG5059 350 REIEEIKFDLSEDRSEIEILVFREQ-SQLSQSSLSG----IFAYMQSLK 393 (568)
T ss_pred HHHHHHHhhhhhhhhhhhhHHHHHH-Hhhhhhhhhh----HHHHHhhhh
Confidence 4556789999999999999999876 6677777777 788888764
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=87.80 E-value=0.82 Score=29.81 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=26.7
Q ss_pred eeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 57 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 57 ~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
..|+||.-. ...+++..|..+ ..+...--..+|. +|-||.+|+
T Consensus 3 ~~~tFdnfv-~g~~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~ 45 (219)
T PF00308_consen 3 PKYTFDNFV-VGESNELAYAAA-KAIAENPGERYNP-LFLYGPSGL 45 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTS
T ss_pred CCCccccCC-cCCcHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCC
Confidence 358999855 566788888764 5555542233454 778999995
No 32
>KOG1800|consensus
Probab=82.30 E-value=1.3 Score=31.90 Aligned_cols=20 Identities=25% Similarity=0.705 Sum_probs=17.6
Q ss_pred HHHHhhCcccEEEEEeccCC
Q psy7619 82 MVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 82 ~v~~~l~G~n~~i~aYGqTg 101 (102)
.+..+.++|.+.|+|||.+|
T Consensus 101 sl~eL~~~ydavvLaYGa~~ 120 (468)
T KOG1800|consen 101 SLKELTDNYDAVVLAYGADG 120 (468)
T ss_pred cHHHHhhcccEEEEEecCCC
Confidence 46778899999999999987
No 33
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=77.51 E-value=0.52 Score=22.02 Aligned_cols=14 Identities=36% Similarity=0.797 Sum_probs=8.0
Q ss_pred hhCcccEEEEEecc
Q psy7619 86 MLHGYNVTIFAYGQ 99 (102)
Q Consensus 86 ~l~G~n~~i~aYGq 99 (102)
-|+|+||.+-.||.
T Consensus 5 qlqgfncvvrsygl 18 (44)
T PF11406_consen 5 QLQGFNCVVRSYGL 18 (44)
T ss_dssp --TTEEE-S--TTS
T ss_pred eecccceEEEccCC
Confidence 37899999999984
No 34
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=75.23 E-value=3.8 Score=31.14 Aligned_cols=44 Identities=23% Similarity=0.444 Sum_probs=28.7
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...|+||..+ ...+++..|.. +..+++..-.++|. ||-||.+|+
T Consensus 282 ~~~~TFDnFv-vG~sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGs 325 (617)
T PRK14086 282 NPKYTFDTFV-IGASNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGL 325 (617)
T ss_pred CCCCCHhhhc-CCCccHHHHHH-HHHHHhCccccCCc-EEEECCCCC
Confidence 4568998744 44556666644 35555544456775 788999996
No 35
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=74.58 E-value=1.2 Score=25.85 Aligned_cols=19 Identities=37% Similarity=0.704 Sum_probs=15.5
Q ss_pred HHHHHhhCcccEEEEEecc
Q psy7619 81 PMVNHMLHGYNVTIFAYGQ 99 (102)
Q Consensus 81 ~~v~~~l~G~n~~i~aYGq 99 (102)
.+--.+|-|||++|+++|-
T Consensus 54 ~lCLaLLmGYnat~yd~ge 72 (106)
T PF06603_consen 54 NLCLALLMGYNATIYDNGE 72 (106)
T ss_pred HHHHHHHHhccchhhhCcc
Confidence 4556788999999999884
No 36
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=72.51 E-value=2.6 Score=29.93 Aligned_cols=32 Identities=19% Similarity=0.414 Sum_probs=27.3
Q ss_pred eeee-cceeeCCCCChHHHHHHhHHHHHHHhhC
Q psy7619 57 RRFT-FDAVYGMQATQTEIYENSVRPMVNHMLH 88 (102)
Q Consensus 57 ~~f~-FD~Vf~~~~sq~~vy~~~~~~~v~~~l~ 88 (102)
..|+ ||.+|..+.+=++||+.++..|++.+-+
T Consensus 50 ~~f~~fD~iYE~heqFe~VYd~I~~~LveaAke 82 (488)
T COG3956 50 IKFSFFDDIYETHEQFEAVYDFIAADLVEAAKE 82 (488)
T ss_pred ceeeehhHHHhhhhhHHHHHHHHHHHHHHhhcc
Confidence 3454 7999999999999999999999988754
No 37
>KOG2721|consensus
Probab=72.37 E-value=5.7 Score=26.27 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=15.2
Q ss_pred HHHHhhCcccEEEEEeccC
Q psy7619 82 MVNHMLHGYNVTIFAYGQT 100 (102)
Q Consensus 82 ~v~~~l~G~n~~i~aYGqT 100 (102)
.-..+|+-++--|||||++
T Consensus 51 cA~~Vl~ef~DIv~AyG~S 69 (260)
T KOG2721|consen 51 CASAVLEEFPDIVFAYGYS 69 (260)
T ss_pred HHHHHHHhccceEEEeccC
Confidence 3346788889999999986
No 38
>PF04446 Thg1: tRNAHis guanylyltransferase; InterPro: IPR007537 The Thg1 protein from Saccharomyces cerevisiae (Baker's yeast) is responsible for adding a GMP residue to the 5' end of tRNA His [].; PDB: 3OTE_A 3OTC_A 3OTD_A 3OTB_A.
Probab=67.38 E-value=6.4 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=13.6
Q ss_pred HHHHHHhhCcccEEEEEeccC
Q psy7619 80 RPMVNHMLHGYNVTIFAYGQT 100 (102)
Q Consensus 80 ~~~v~~~l~G~n~~i~aYGqT 100 (102)
......+++-+...++||||+
T Consensus 53 ~~aa~~l~~~~~~~~~aY~~S 73 (135)
T PF04446_consen 53 NEAAKALMEEFPDIVLAYGQS 73 (135)
T ss_dssp HHHHHHHHHHSSSEEEEEEET
T ss_pred HHHHHHHHHhCCCcEEEEEcC
Confidence 333344455555699999996
No 39
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=65.66 E-value=5.3 Score=20.07 Aligned_cols=17 Identities=24% Similarity=0.577 Sum_probs=14.1
Q ss_pred HhhCcccEEEEEeccCC
Q psy7619 85 HMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTg 101 (102)
..|-|...+++.||.+|
T Consensus 28 s~LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 28 STLCGVDVALIVFSPDG 44 (51)
T ss_dssp HHHHT-EEEEEEEETTS
T ss_pred eeecCCeEEEEEECCCC
Confidence 56789999999999987
No 40
>PRK08116 hypothetical protein; Validated
Probab=64.57 E-value=9.3 Score=25.76 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=28.2
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhC--cccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLH--GYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~--G~n~~i~aYGqTgS 102 (102)
-..++||. |.....++..|.. +...++.+.+ ..+..++-||.+|+
T Consensus 79 ~~~~tFdn-f~~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~Gt 125 (268)
T PRK08116 79 FRNSTFEN-FLFDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGT 125 (268)
T ss_pred HHhcchhc-ccCChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCC
Confidence 34567776 3345666666665 4666666543 33445888999996
No 41
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=61.96 E-value=13 Score=26.80 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=26.7
Q ss_pred CceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 55 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 55 ~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
-...|+||.-. ....++..|..+ ..+.+.--..+| .++-||.+|+
T Consensus 115 l~~~~tfd~fv-~g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~ 159 (450)
T PRK00149 115 LNPKYTFDNFV-VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGL 159 (450)
T ss_pred CCCCCcccccc-cCCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCC
Confidence 34568888733 345666666653 444433223345 4777999996
No 42
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=61.83 E-value=14 Score=26.79 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=27.5
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...|+||.-. ...+++..|..+ ..+... -..+|. +|-||.+|+
T Consensus 99 ~~~~tFdnFv-~g~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~ 141 (440)
T PRK14088 99 NPDYTFENFV-VGPGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGL 141 (440)
T ss_pred CCCCcccccc-cCCchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCC
Confidence 4568999855 456677777754 333332 122665 889999996
No 43
>PRK06893 DNA replication initiation factor; Validated
Probab=61.75 E-value=19 Score=23.49 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=24.7
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...++||..+... ++..+ ..+...+-.++|..++-||.+|+
T Consensus 10 ~~~~~fd~f~~~~-~~~~~-----~~~~~~~~~~~~~~l~l~G~~G~ 50 (229)
T PRK06893 10 IDDETLDNFYADN-NLLLL-----DSLRKNFIDLQQPFFYIWGGKSS 50 (229)
T ss_pred CCcccccccccCC-hHHHH-----HHHHHHhhccCCCeEEEECCCCC
Confidence 3457888877543 33222 22223333567778899999996
No 44
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=60.14 E-value=17 Score=25.79 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=25.7
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...|+||.-. ....+...|..+ ..+...--..+| .++-||.+|+
T Consensus 104 ~~~~tfd~fi-~g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~ 147 (405)
T TIGR00362 104 NPKYTFDNFV-VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGL 147 (405)
T ss_pred CCCCcccccc-cCCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCC
Confidence 4568888833 345666666553 444433212244 4677999996
No 45
>PRK06620 hypothetical protein; Validated
Probab=59.05 E-value=17 Score=23.57 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=27.7
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCccc---EEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYN---VTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n---~~i~aYGqTgS 102 (102)
...|+||... ...+++..|..+ ..+.+ .. |+| -.++=||..||
T Consensus 10 ~~~~tfd~Fv-vg~~N~~a~~~~-~~~~~-~~-~~~~~~~~l~l~Gp~G~ 55 (214)
T PRK06620 10 SSKYHPDEFI-VSSSNDQAYNII-KNWQC-GF-GVNPYKFTLLIKGPSSS 55 (214)
T ss_pred CCCCCchhhE-ecccHHHHHHHH-HHHHH-cc-ccCCCcceEEEECCCCC
Confidence 4458899866 566677788775 33332 11 333 35888999996
No 46
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=55.52 E-value=8.9 Score=24.29 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=10.4
Q ss_pred CCCCCCceEEEEEeCCCChhhh
Q psy7619 1 MKSYDENIKVVVRCRPMNVPER 22 (102)
Q Consensus 1 ~~~~~~~i~V~vRvRP~~~~e~ 22 (102)
|+.+....||+||.=|.+-.|.
T Consensus 1 ~~~~~~~~KvVIR~LPP~Ltee 22 (176)
T PF03467_consen 1 MKKEKEGTKVVIRRLPPNLTEE 22 (176)
T ss_dssp --------EEEEEEE-TTS-HH
T ss_pred CCCcccCceEEEeCCCCCCCHH
Confidence 7888899999999999876664
No 47
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=53.81 E-value=20 Score=21.79 Aligned_cols=24 Identities=13% Similarity=0.311 Sum_probs=19.1
Q ss_pred eeeecceeeCCCCChHHHHHHhHH
Q psy7619 57 RRFTFDAVYGMQATQTEIYENSVR 80 (102)
Q Consensus 57 ~~f~FD~Vf~~~~sq~~vy~~~~~ 80 (102)
+..-||+||++.+.-+++-+.+-+
T Consensus 107 ~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 107 KEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred HHcCCCEEECcCCCHHHHHHHHHH
Confidence 456799999999998888777633
No 48
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=52.56 E-value=16 Score=25.72 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.4
Q ss_pred HHHHHHHhhCcccEEEEEeccCCC
Q psy7619 79 VRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 79 ~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
..+++..+.+--++.|+.=|+|||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGS 136 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGS 136 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCC
Confidence 457788889999999999999998
No 49
>COG2243 CobF Precorrin-2 methylase [Coenzyme metabolism]
Probab=52.15 E-value=34 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=33.9
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEecc
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQ 99 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGq 99 (102)
...+.|.-.++....-++.|++.+..+...+-+|.|+.+++.|-
T Consensus 57 ~~~l~fPm~~~~~e~~~~~~~e~a~~va~~l~~G~~VAf~~lGD 100 (234)
T COG2243 57 IVELHFPMTTDMREELEDAWEEAAAEVAAELEAGRDVAFLTLGD 100 (234)
T ss_pred eeEEEeccCCchHHHHHHHHHHHHHHHHHHHHcCCeEEEEEccC
Confidence 44555555554345567899999999999999999999998873
No 50
>smart00432 MADS MADS domain.
Probab=51.67 E-value=18 Score=18.63 Aligned_cols=18 Identities=22% Similarity=0.470 Sum_probs=15.5
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+|-|...+++.|+++|.
T Consensus 35 s~Lc~~~v~~iv~sp~g~ 52 (59)
T smart00432 35 SVLCDAEVALIVFSPTGK 52 (59)
T ss_pred hhccCCeEEEEEECCCCC
Confidence 458999999999999874
No 51
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=50.27 E-value=16 Score=20.46 Aligned_cols=26 Identities=23% Similarity=0.543 Sum_probs=21.4
Q ss_pred hHHHHHHhHHHHHHHhhCcccEEEEE
Q psy7619 71 QTEIYENSVRPMVNHMLHGYNVTIFA 96 (102)
Q Consensus 71 q~~vy~~~~~~~v~~~l~G~n~~i~a 96 (102)
.++-|..+++.-|..+|+||.=++..
T Consensus 54 ~d~~fp~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 54 EDDRFPVCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred ccccccHHHHHHHHHHhccCCceeee
Confidence 46677888999999999999877653
No 52
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=50.23 E-value=38 Score=23.39 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=25.3
Q ss_pred eecceeeCCCCChHHHHHHhHHHHHHHhhC-cccEEEEEeccCCC
Q psy7619 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLH-GYNVTIFAYGQTGT 102 (102)
Q Consensus 59 f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~-G~n~~i~aYGqTgS 102 (102)
+.-|++.+.-...++-.+.+..- +..++. +....++-||..|+
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~~-l~~~~~~~~~~~i~I~G~~Gt 51 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAKA-LRPILRGSRPSNVFIYGKTGT 51 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHHH-HHHHHcCCCCCcEEEECCCCC
Confidence 33444444455566666665333 344444 45567889999986
No 53
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=49.09 E-value=18 Score=18.63 Aligned_cols=17 Identities=18% Similarity=0.487 Sum_probs=14.9
Q ss_pred hhCcccEEEEEeccCCC
Q psy7619 86 MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTgS 102 (102)
+|-|...+++.|+.+|.
T Consensus 36 ~Lc~~~v~~iv~sp~g~ 52 (59)
T cd00120 36 VLCDAEVAVIVFSPSGK 52 (59)
T ss_pred eccCCcEEEEEECCCCC
Confidence 57899999999999874
No 54
>PRK09087 hypothetical protein; Validated
Probab=48.26 E-value=38 Score=22.20 Aligned_cols=41 Identities=10% Similarity=0.128 Sum_probs=25.4
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...|+||..+ ....+..+|..+ .....-.+-.++=||.+||
T Consensus 15 ~~~~~~~~Fi-~~~~N~~a~~~l-----~~~~~~~~~~l~l~G~~Gs 55 (226)
T PRK09087 15 DPAYGRDDLL-VTESNRAAVSLV-----DHWPNWPSPVVVLAGPVGS 55 (226)
T ss_pred CCCCChhcee-ecCchHHHHHHH-----HhcccCCCCeEEEECCCCC
Confidence 3457889866 555566677743 2222223445788999997
No 55
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=48.09 E-value=23 Score=19.51 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=15.6
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+|.|...+++.|+.+|.
T Consensus 35 s~Lc~~~v~~iv~sp~~~ 52 (83)
T cd00266 35 STLCGAEVAVIVYSPSGK 52 (83)
T ss_pred HHhhCCcEEEEEECCCCC
Confidence 468999999999999873
No 56
>KOG0014|consensus
Probab=46.78 E-value=20 Score=22.53 Aligned_cols=18 Identities=11% Similarity=0.451 Sum_probs=15.7
Q ss_pred HhhCcccEEEEEeccCCC
Q psy7619 85 HMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 85 ~~l~G~n~~i~aYGqTgS 102 (102)
.+|.|...||++|+.+|.
T Consensus 36 svLCd~eiavIifsp~~~ 53 (195)
T KOG0014|consen 36 SVLCDAEIAVIVFSPSGK 53 (195)
T ss_pred HHhcCCeEEEEEECCCCC
Confidence 468899999999999874
No 57
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=46.37 E-value=55 Score=22.94 Aligned_cols=43 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred eecceeeCCCCChHHHHHHhHHHHHHHhh-CcccEEEEEeccCCC
Q psy7619 59 FTFDAVYGMQATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGT 102 (102)
Q Consensus 59 f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l-~G~n~~i~aYGqTgS 102 (102)
|..+.+.+.-...++-++.+...+ ...+ .+....++-||+.|+
T Consensus 23 l~~~~~P~~l~~Re~e~~~l~~~l-~~~~~~~~~~~~lI~G~~Gt 66 (394)
T PRK00411 23 LEPDYVPENLPHREEQIEELAFAL-RPALRGSRPLNVLIYGPPGT 66 (394)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHH-HHHhCCCCCCeEEEECCCCC
Confidence 444444444455666666654433 3444 344556788999986
No 58
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=45.85 E-value=54 Score=18.36 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCChHHHHHHhHHHHHHH-------hhCcccEEEEEeccCCC
Q psy7619 68 QATQTEIYENSVRPMVNH-------MLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 68 ~~sq~~vy~~~~~~~v~~-------~l~G~n~~i~aYGqTgS 102 (102)
+..|...|+..+.++-.. +|.|- ++|.-||.+|+
T Consensus 39 ~~~QskFFe~~A~~~tkR~~l~~fl~l~g~-~~~~~~g~~~~ 79 (90)
T PLN00017 39 NPLQSKFFETFAAPFTKRGLLLKFLALGGG-SALAYVGAKGS 79 (90)
T ss_pred ChHHHHHHHHHhhhhhHHHHHHHHHHHcCc-ceEEEecccCc
Confidence 456889999776655332 33555 66667788775
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=45.45 E-value=42 Score=23.84 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=18.4
Q ss_pred HHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 72 TEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 72 ~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
++-++.++.-+...+..+--..++.||.||+
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GT 53 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGT 53 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCC
Confidence 3444555444444444444445999999996
No 60
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=40.46 E-value=21 Score=24.79 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=22.4
Q ss_pred eeCCCCChHHHHHHhHHHHHHHhh--CcccEEEEEeccCC
Q psy7619 64 VYGMQATQTEIYENSVRPMVNHML--HGYNVTIFAYGQTG 101 (102)
Q Consensus 64 Vf~~~~sq~~vy~~~~~~~v~~~l--~G~n~~i~aYGqTg 101 (102)
+.+.++..-+.+... .+...+ .|+++.+.|=||||
T Consensus 117 ~vGTDcavGK~tTal---~L~~~l~~~G~~a~fvaTGQTG 153 (301)
T PF07755_consen 117 TVGTDCAVGKMTTAL---ELRRALRERGINAGFVATGQTG 153 (301)
T ss_dssp EEESSSSSSHHHHHH---HHHHHHHHTT--EEEEE-SHHH
T ss_pred EEccCccccHHHHHH---HHHHHHHHcCCCceEEecCCce
Confidence 456777777776654 333434 69999999999997
No 61
>PRK12377 putative replication protein; Provisional
Probab=40.16 E-value=67 Score=21.51 Aligned_cols=42 Identities=14% Similarity=0.273 Sum_probs=26.6
Q ss_pred eecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 59 f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
.+||.-......|..++.. +..++..+..+.+ .++-||.+|+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~~-~l~l~G~~Gt 112 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGCT-NFVFSGKPGT 112 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcCC-eEEEECCCCC
Confidence 4667644344556667665 4667777666543 5667899986
No 62
>PRK07952 DNA replication protein DnaC; Validated
Probab=40.07 E-value=73 Score=21.29 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=25.6
Q ss_pred eeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 58 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 58 ~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
..+||.-......|..++..+ ...++....+.. .++-||.+|+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~~-~~~l~G~~Gt 110 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNIA-SFIFSGKPGT 110 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCCc-eEEEECCCCC
Confidence 456776433344566676664 555555555544 5677899885
No 63
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=39.21 E-value=51 Score=24.11 Aligned_cols=42 Identities=21% Similarity=0.471 Sum_probs=25.0
Q ss_pred eeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 58 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 58 ~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
.|+||... ...+++..|.. +..+...--..+| .+|-||.+|+
T Consensus 111 ~~tFdnFv-~g~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~ 152 (450)
T PRK14087 111 ENTFENFV-IGSSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGM 152 (450)
T ss_pred ccchhccc-CCCcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCC
Confidence 48999855 45566667754 3444432111245 4778999985
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.45 E-value=38 Score=20.48 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=18.1
Q ss_pred ceeeecceeeCCCCChHHHHHHh
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENS 78 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~ 78 (102)
-+.+-||.||++.+.-+++-+.+
T Consensus 108 l~~~G~~~vf~~~~~~~~i~~~l 130 (137)
T PRK02261 108 FKEMGFDRVFPPGTDPEEAIDDL 130 (137)
T ss_pred HHHcCCCEEECcCCCHHHHHHHH
Confidence 34567999999999888876665
No 65
>PF03451 HELP: HELP motif; InterPro: IPR005108 The HELP (Hydrophobic ELP) domain is found in EMAP and EMAP-like proteins (ELPs) [, ]. Although called a domain it contains a predicted transmembrane helix and may not form a globular domain. It is also not clear if these proteins localize to membranes.
Probab=37.08 E-value=74 Score=17.42 Aligned_cols=14 Identities=21% Similarity=0.418 Sum_probs=9.9
Q ss_pred CCCceEEEEEeCCC
Q psy7619 4 YDENIKVVVRCRPM 17 (102)
Q Consensus 4 ~~~~i~V~vRvRP~ 17 (102)
+++.+++++|=||-
T Consensus 1 e~g~~~~~ir~~~~ 14 (77)
T PF03451_consen 1 EEGDVFMAIRGRPG 14 (77)
T ss_pred CCccEEEEEcCccc
Confidence 35677888887763
No 66
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=36.75 E-value=64 Score=19.26 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=24.4
Q ss_pred eeeCCCCChHHHHHHhHHHHHHHhhCccc
Q psy7619 63 AVYGMQATQTEIYENSVRPMVNHMLHGYN 91 (102)
Q Consensus 63 ~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n 91 (102)
++|.|-.+.++.....++.+++.+++|--
T Consensus 61 ~~Y~p~vs~ee~~~~~~~~~~~~~f~gs~ 89 (130)
T TIGR02698 61 FIYTALVSEDEAVENAAQELFSRICSRKV 89 (130)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHCCCH
Confidence 36778899999999999999998888753
No 67
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=36.50 E-value=80 Score=21.14 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=26.3
Q ss_pred eeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 57 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 57 ~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
++|.+..+=.....+...+... ..++..+-.|.| ++-||+.|+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~ 116 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGV 116 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCC
Confidence 4454444334566788888875 666666654444 445899884
No 68
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=35.23 E-value=23 Score=21.35 Aligned_cols=16 Identities=44% Similarity=0.376 Sum_probs=12.8
Q ss_pred hCcccEEEEEeccCCC
Q psy7619 87 LHGYNVTIFAYGQTGT 102 (102)
Q Consensus 87 l~G~n~~i~aYGqTgS 102 (102)
=+.-.++|||.+.||+
T Consensus 81 heq~dGti~Amc~tg~ 96 (126)
T PF14784_consen 81 HEQEDGTIFAMCMTGT 96 (126)
T ss_pred eEeccceEEEEEeccC
Confidence 3556789999999985
No 69
>PF04517 Microvir_lysis: Microvirus lysis protein (E), C terminus; InterPro: IPR007605 E protein causes host cell lysis by inhibiting MraY, a peptidoglycan biosynthesis enzyme. This leads to cell wall failure at septation []. The N-terminal transmembrane region matches the signal peptide model and must be omitted from the family.; GO: 0004857 enzyme inhibitor activity, 0019054 modulation by virus of host cellular process
Probab=34.91 E-value=17 Score=17.37 Aligned_cols=9 Identities=44% Similarity=0.833 Sum_probs=6.9
Q ss_pred EEEeCCCCh
Q psy7619 11 VVRCRPMNV 19 (102)
Q Consensus 11 ~vRvRP~~~ 19 (102)
-+|+||++.
T Consensus 20 ~~rLkPLn~ 28 (42)
T PF04517_consen 20 SVRLKPLNC 28 (42)
T ss_pred hcccccCcC
Confidence 479999873
No 70
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=33.78 E-value=97 Score=19.66 Aligned_cols=41 Identities=20% Similarity=0.392 Sum_probs=25.0
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
+..++||... . ..+...++.+ +.++ .......|+-||.+|+
T Consensus 9 ~~~~~~~~~~-~-~~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~ 49 (226)
T TIGR03420 9 PDDPTFDNFY-A-GGNAELLAAL-RQLA---AGKGDRFLYLWGESGS 49 (226)
T ss_pred CCchhhcCcC-c-CCcHHHHHHH-HHHH---hcCCCCeEEEECCCCC
Confidence 3447777654 2 2556666654 2322 2455677889999996
No 71
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=33.31 E-value=62 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=25.4
Q ss_pred ceeeCCCCChHHHHHHhHHHHHHHhhCccc
Q psy7619 62 DAVYGMQATQTEIYENSVRPMVNHMLHGYN 91 (102)
Q Consensus 62 D~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n 91 (102)
-++|.+-.++++.....+..+++.+++|.-
T Consensus 59 ~~~Y~p~is~~e~~~~~~~~~l~~~~~gs~ 88 (115)
T PF03965_consen 59 AYVYSPLISREEYLAQELRQFLDRLFDGSI 88 (115)
T ss_dssp CEEEEESSSHHHHHHHHHHHHHHHHSTTHH
T ss_pred ceEEEeCCcHHHHHHHHHHHHHHHHhCCCH
Confidence 456888999999999999999999988743
No 72
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=33.18 E-value=36 Score=22.28 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=21.9
Q ss_pred CChHHHHHHhHHHHHHHhhCcccEEEEEeccC
Q psy7619 69 ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQT 100 (102)
Q Consensus 69 ~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqT 100 (102)
.-|.+||+-. .+...+.|+++.|-|||..
T Consensus 45 i~q~Difd~~---~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 45 ILQKDIFDLT---SLASDLAGHDAVISAFGAG 73 (211)
T ss_pred eecccccChh---hhHhhhcCCceEEEeccCC
Confidence 4477888765 3367788999999999865
No 73
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=31.78 E-value=80 Score=20.73 Aligned_cols=27 Identities=15% Similarity=0.601 Sum_probs=21.6
Q ss_pred hHHHHHHhHHHHHHHhhCcccEEEEEecc
Q psy7619 71 QTEIYENSVRPMVNHMLHGYNVTIFAYGQ 99 (102)
Q Consensus 71 q~~vy~~~~~~~v~~~l~G~n~~i~aYGq 99 (102)
..++++.+ .++|..+++- +++|++||.
T Consensus 117 ~ndl~d~L-e~~l~~A~~~-~~~iyvFG~ 143 (206)
T PF10042_consen 117 DNDLNDDL-EPYLQRAISD-DATIYVFGE 143 (206)
T ss_pred cchHHHHH-HHHHHHHHhC-CCEEEEECc
Confidence 57787775 8888887765 899999995
No 74
>PF09518 RE_HindIII: HindIII restriction endonuclease; InterPro: IPR019043 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the HindIII restriction endonuclease which recognises and cleaves A^AGCTT. ; PDB: 3A4K_A 2E52_B.
Probab=31.74 E-value=40 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.472 Sum_probs=25.5
Q ss_pred eeCCCCChHHHHHHhHHHHHHHhhC--cccEEEEE
Q psy7619 64 VYGMQATQTEIYENSVRPMVNHMLH--GYNVTIFA 96 (102)
Q Consensus 64 Vf~~~~sq~~vy~~~~~~~v~~~l~--G~n~~i~a 96 (102)
.+.+++++|.+|...+.-|+...+. |+++.+++
T Consensus 55 ~y~~dSSeEkLySK~~D~lla~~~~~mg~~s~vL~ 89 (311)
T PF09518_consen 55 IYKHDSSEEKLYSKYTDALLAEWFQEMGLNSKVLT 89 (311)
T ss_dssp TS-TTSHHHHHHHHHHHHHHHHHHHHTTEEEEE-S
T ss_pred ccCCCccHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 4678999999999998888877763 88887764
No 75
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=31.64 E-value=1e+02 Score=25.40 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=18.5
Q ss_pred ChHHHHHHhHHHHHHHhhC--cccEEEEEeccCCC
Q psy7619 70 TQTEIYENSVRPMVNHMLH--GYNVTIFAYGQTGT 102 (102)
Q Consensus 70 sq~~vy~~~~~~~v~~~l~--G~n~~i~aYGqTgS 102 (102)
.-++=++.++.-| ..++. |-+.+||-||.+|+
T Consensus 759 hREeEIeeLasfL-~paIkgsgpnnvLYIyG~PGT 792 (1164)
T PTZ00112 759 CREKEIKEVHGFL-ESGIKQSGSNQILYISGMPGT 792 (1164)
T ss_pred ChHHHHHHHHHHH-HHHHhcCCCCceEEEECCCCC
Confidence 3444445543333 44443 44567889999996
No 76
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=31.43 E-value=61 Score=22.87 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=17.7
Q ss_pred eeCCCCChHHHHHHhHHHHHHH
Q psy7619 64 VYGMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 64 Vf~~~~sq~~vy~~~~~~~v~~ 85 (102)
++-|+..|.+||+.-+.|.+..
T Consensus 80 ~L~PDe~q~~vy~~~I~p~Lk~ 101 (338)
T COG0059 80 ILLPDEQQKEVYEKEIAPNLKE 101 (338)
T ss_pred EeCchhhHHHHHHHHhhhhhcC
Confidence 4578899999999877887644
No 77
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=30.73 E-value=79 Score=23.03 Aligned_cols=46 Identities=24% Similarity=0.464 Sum_probs=28.3
Q ss_pred CCceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 54 GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 54 ~~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
.....|+||. |-...++...|... .. +...-.+...-+|=||.+|+
T Consensus 79 ~l~~~ytFdn-Fv~g~~N~~A~aa~-~~-va~~~g~~~nplfi~G~~Gl 124 (408)
T COG0593 79 GLNPKYTFDN-FVVGPSNRLAYAAA-KA-VAENPGGAYNPLFIYGGVGL 124 (408)
T ss_pred cCCCCCchhh-eeeCCchHHHHHHH-HH-HHhccCCcCCcEEEECCCCC
Confidence 3456699998 44777777777653 22 22222222335788999996
No 78
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=30.69 E-value=56 Score=19.68 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=17.1
Q ss_pred eeeecceeeCCCCChHHHHHHh
Q psy7619 57 RRFTFDAVYGMQATQTEIYENS 78 (102)
Q Consensus 57 ~~f~FD~Vf~~~~sq~~vy~~~ 78 (102)
+..-||.||++.++-+++-+.+
T Consensus 105 ~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 105 KEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred HHcCCCEEECcCCCHHHHHHHH
Confidence 4467999999999888776553
No 79
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=30.24 E-value=1.3e+02 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=18.0
Q ss_pred HHHHHHHhhCcccEEEEEeccCC
Q psy7619 79 VRPMVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 79 ~~~~v~~~l~G~n~~i~aYGqTg 101 (102)
+...|+.+-.++...|++||--|
T Consensus 18 lq~~id~~~~~~d~Ill~YG~Cg 40 (166)
T PF07796_consen 18 LQEEIDKASKDYDGILLFYGLCG 40 (166)
T ss_pred HHHHHHHhhccCCeEEEEEeCCC
Confidence 45566676689999999999755
No 80
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.22 E-value=48 Score=19.79 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=11.6
Q ss_pred HHhhCcccEEEEEeccCC
Q psy7619 84 NHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 84 ~~~l~G~n~~i~aYGqTg 101 (102)
..++-.=.+++..|||-+
T Consensus 78 Pail~aP~gs~V~YGQP~ 95 (121)
T PF04019_consen 78 PAILYAPEGSVVLYGQPG 95 (121)
T ss_pred HHHHhCCCCCEEEECCCC
Confidence 344555556778888865
No 81
>PF15408 PH_7: Pleckstrin homology domain
Probab=29.35 E-value=46 Score=18.84 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=15.0
Q ss_pred HHHHHHH---hhC-cccE-EEEEeccCC
Q psy7619 79 VRPMVNH---MLH-GYNV-TIFAYGQTG 101 (102)
Q Consensus 79 ~~~~v~~---~l~-G~n~-~i~aYGqTg 101 (102)
+.|+++. .-+ |.|+ -|++||..|
T Consensus 46 s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~ 73 (104)
T PF15408_consen 46 SHPMVNFSQAVPNLGINAFGFLMYSPSR 73 (104)
T ss_pred hcccccccccCCCCCeeEEEEEEecCCc
Confidence 4555543 334 7777 788998765
No 82
>PF06510 DUF1102: Protein of unknown function (DUF1102); InterPro: IPR009482 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=29.29 E-value=1.3e+02 Score=18.72 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=11.0
Q ss_pred CCCceeeecceeeC
Q psy7619 53 PGKARRFTFDAVYG 66 (102)
Q Consensus 53 ~~~~~~f~FD~Vf~ 66 (102)
-.+...|.||.||.
T Consensus 45 lSp~S~Y~Fd~VF~ 58 (146)
T PF06510_consen 45 LSPNSTYVFDEVFE 58 (146)
T ss_pred cCCCceEeeeeEEE
Confidence 34567899999994
No 83
>KOG1547|consensus
Probab=28.87 E-value=1.1e+02 Score=21.11 Aligned_cols=28 Identities=21% Similarity=0.534 Sum_probs=20.7
Q ss_pred HHHhHHHHHHHhh-CcccEEEEEeccCCC
Q psy7619 75 YENSVRPMVNHML-HGYNVTIFAYGQTGT 102 (102)
Q Consensus 75 y~~~~~~~v~~~l-~G~n~~i~aYGqTgS 102 (102)
++.+...+=..+| .|+.-.|+.-||+|.
T Consensus 29 idtI~~Qm~~k~mk~GF~FNIMVVgqSgl 57 (336)
T KOG1547|consen 29 IDTIIEQMRKKTMKTGFDFNIMVVGQSGL 57 (336)
T ss_pred HHHHHHHHHHHHHhccCceEEEEEecCCC
Confidence 3455555655666 599999999999984
No 84
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=28.69 E-value=1.1e+02 Score=17.04 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=14.1
Q ss_pred CCCCCceEEEEEeCCCCh
Q psy7619 2 KSYDENIKVVVRCRPMNV 19 (102)
Q Consensus 2 ~~~~~~i~V~vRvRP~~~ 19 (102)
+...+.+.+.||+.|-..
T Consensus 2 ~~~~~g~~l~v~V~P~A~ 19 (87)
T TIGR00251 2 RENDDGLLIRIYVQPKAS 19 (87)
T ss_pred eEeCCeEEEEEEEeeCCC
Confidence 456778999999999653
No 85
>PRK08084 DNA replication initiation factor; Provisional
Probab=28.60 E-value=1.2e+02 Score=19.80 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=24.4
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
+..++||..+ +. .|...+..+ ..+.. ......++-||.+|+
T Consensus 16 ~~~~~fd~f~-~~-~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~ 56 (235)
T PRK08084 16 PDDETFASFY-PG-DNDSLLAAL-QNALR---QEHSGYIYLWSREGA 56 (235)
T ss_pred CCcCCccccc-cC-ccHHHHHHH-HHHHh---CCCCCeEEEECCCCC
Confidence 3447788755 44 677777654 33322 222236788999986
No 86
>KOG0056|consensus
Probab=28.04 E-value=50 Score=25.22 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=21.1
Q ss_pred CCCCChHHHHHHh-HHHHHHHhh---CcccEEE
Q psy7619 66 GMQATQTEIYENS-VRPMVNHML---HGYNVTI 94 (102)
Q Consensus 66 ~~~~sq~~vy~~~-~~~~v~~~l---~G~n~~i 94 (102)
.+.+++++||+.. +..+-+.++ +|||.-|
T Consensus 636 k~~AsneevyaAAkAA~IHdrIl~fPegY~t~V 668 (790)
T KOG0056|consen 636 KPSASNEEVYAAAKAAQIHDRILQFPEGYNTRV 668 (790)
T ss_pred CCCCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence 4789999999987 555555555 7888643
No 87
>KOG3957|consensus
Probab=27.50 E-value=36 Score=24.20 Aligned_cols=12 Identities=50% Similarity=0.789 Sum_probs=9.7
Q ss_pred cEEEEEeccCCC
Q psy7619 91 NVTIFAYGQTGT 102 (102)
Q Consensus 91 n~~i~aYGqTgS 102 (102)
-|.|-.|||||+
T Consensus 105 yc~itGyGQtG~ 116 (387)
T KOG3957|consen 105 YCSITGYGQTGR 116 (387)
T ss_pred EEEEecccccCc
Confidence 477888999985
No 88
>PRK05642 DNA replication initiation factor; Validated
Probab=26.78 E-value=1.2e+02 Score=19.80 Aligned_cols=39 Identities=21% Similarity=0.452 Sum_probs=20.8
Q ss_pred eeeecceeeCCCCChHHHHHHhHHHHHHHhhC---cc-cEEEEEeccCCC
Q psy7619 57 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLH---GY-NVTIFAYGQTGT 102 (102)
Q Consensus 57 ~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~---G~-n~~i~aYGqTgS 102 (102)
..|+||.-+. . .+...++ .+....+ +. +..++-||.+|+
T Consensus 14 ~~~tfdnF~~-~-~~~~a~~-----~~~~~~~~~~~~~~~~l~l~G~~G~ 56 (234)
T PRK05642 14 DDATFANYYP-G-ANAAALG-----YVERLCEADAGWTESLIYLWGKDGV 56 (234)
T ss_pred CcccccccCc-C-ChHHHHH-----HHHHHhhccccCCCCeEEEECCCCC
Confidence 4588888662 2 2333333 3333222 21 245778999996
No 89
>PRK06526 transposase; Provisional
Probab=26.52 E-value=82 Score=21.12 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=17.6
Q ss_pred eCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 65 f~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
+.+.-++..+..-.....++ ++.| |+-||.+|+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~Gt 109 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGT 109 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCC
Confidence 44445555554433333332 4444 677899986
No 90
>COG1909 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.40 E-value=56 Score=20.72 Aligned_cols=15 Identities=33% Similarity=0.328 Sum_probs=10.3
Q ss_pred hCcccEEEEEeccCC
Q psy7619 87 LHGYNVTIFAYGQTG 101 (102)
Q Consensus 87 l~G~n~~i~aYGqTg 101 (102)
+-+=.+++.+|||-+
T Consensus 126 ~~ap~~tvV~YGqP~ 140 (167)
T COG1909 126 LYAPLGTVVLYGQPD 140 (167)
T ss_pred hhcCCCCEEEeCCCC
Confidence 344467888899864
No 91
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=26.31 E-value=1.2e+02 Score=21.86 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=27.9
Q ss_pred eeecceeeCCCCChHHHHHHhHHHHHH-HhhC--c--ccEEEEEeccCCC
Q psy7619 58 RFTFDAVYGMQATQTEIYENSVRPMVN-HMLH--G--YNVTIFAYGQTGT 102 (102)
Q Consensus 58 ~f~FD~Vf~~~~sq~~vy~~~~~~~v~-~~l~--G--~n~~i~aYGqTgS 102 (102)
..+|+.|-+.+..-+++-+.+..|+.. ..++ | ..-.|+-||..|+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGT 190 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGT 190 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCC
Confidence 466777777666566666666556553 2333 2 2345778999986
No 92
>PF11693 DUF2990: Protein of unknown function (DUF2990); InterPro: IPR021706 This family of proteins represents a fungal protein with unknown function.
Probab=25.86 E-value=73 Score=16.76 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=23.3
Q ss_pred ecceeeCCCCChHHHHHHhHHHHHHHhhCccc
Q psy7619 60 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYN 91 (102)
Q Consensus 60 ~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n 91 (102)
-||.+++-..+-.+.|..+ ..-|+.+-++.+
T Consensus 14 ~fd~~Yd~S~dlaeFy~rV-Sk~I~~~~~~~~ 44 (64)
T PF11693_consen 14 FFDNVYDYSDDLAEFYGRV-SKYIESAKDLIK 44 (64)
T ss_pred hhhccccCCHHHHHHHHHH-HHHHHHHHhccC
Confidence 5899999999999999987 444566555543
No 93
>PF02352 Decorin_bind: Decorin binding protein; InterPro: IPR003332 Decorin is a proteoglycan that decorates collagen fibres. Borrelia burgdorferi causes lyme disease, a tick-borne infection that can develop into a chronic, multisystemic disorder. Decorin may mediate the adherence of B. burgdorferi to collagen fibres in skin and other tissues []. B. burgdorferi decorin binding protein A (DbpA) facilitates this binding [].
Probab=25.79 E-value=52 Score=20.09 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=25.8
Q ss_pred CChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 69 ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 69 ~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
++-.+|-+++-+-.-+..-+|.|---|.=++|||
T Consensus 6 SS~kdI~deI~kikkeA~~~GVnf~AFt~~~TGs 39 (140)
T PF02352_consen 6 SSAKDIKDEIDKIKKEAADKGVNFDAFTDTKTGS 39 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHhccCcccc
Confidence 4556777777555666677899998888899997
No 94
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=25.39 E-value=1.6e+02 Score=18.83 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=23.0
Q ss_pred ceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...++||..+ .. .++.....+ +.+... ...+..++-||.+|+
T Consensus 12 ~~~~~~d~f~-~~-~~~~~~~~l-~~~~~~--~~~~~~~~l~G~~G~ 53 (227)
T PRK08903 12 PPPPTFDNFV-AG-ENAELVARL-RELAAG--PVADRFFYLWGEAGS 53 (227)
T ss_pred CChhhhcccc-cC-CcHHHHHHH-HHHHhc--cCCCCeEEEECCCCC
Confidence 3458888866 22 233444432 333331 233456788999986
No 95
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=25.10 E-value=1.2e+02 Score=16.20 Aligned_cols=28 Identities=14% Similarity=0.408 Sum_probs=14.7
Q ss_pred cEEEEcCCCcEEEEeccCCCcCCCCCCCceeeeccee
Q psy7619 28 NVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64 (102)
Q Consensus 28 ~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~f~FD~V 64 (102)
|.+..++....-.+..... ...|.||.+
T Consensus 29 c~V~y~~~t~~F~l~~~~~---------~~~f~FDdI 56 (67)
T PF08796_consen 29 CTVTYDQETETFELEEYRQ---------KQKFQFDDI 56 (67)
T ss_dssp EEEEEETTTTEEEEEEEET---------TCEEEES-H
T ss_pred EEEEEECCCCeEEEEEecC---------CCEeecccc
Confidence 4455555555555554332 445999853
No 96
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=25.01 E-value=1.4e+02 Score=21.82 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=26.8
Q ss_pred CceeeecceeeCCCCChHHHHHHhHHHHHHHh--hCc--ccEEEEEeccCCC
Q psy7619 55 KARRFTFDAVYGMQATQTEIYENSVRPMVNHM--LHG--YNVTIFAYGQTGT 102 (102)
Q Consensus 55 ~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~--l~G--~n~~i~aYGqTgS 102 (102)
-...|+||.-. ...+++..|.. +..+.... ..| +|. ++-||.+|+
T Consensus 104 l~~~~tFdnFv-~g~~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~ 152 (445)
T PRK12422 104 LDPLMTFANFL-VTPENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGS 152 (445)
T ss_pred CCcccccccee-eCCcHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCC
Confidence 34568999855 45567766654 34444332 223 454 567999985
No 97
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=24.86 E-value=62 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.9
Q ss_pred CCCCChHHHHHHhHHHHHHH
Q psy7619 66 GMQATQTEIYENSVRPMVNH 85 (102)
Q Consensus 66 ~~~~sq~~vy~~~~~~~v~~ 85 (102)
.|++.|.+.|..+++.++.+
T Consensus 230 ~P~s~~a~~yr~LA~~I~~n 249 (278)
T COG1348 230 APDSNQAEEYRELAKKILEN 249 (278)
T ss_pred CcchhHHHHHHHHHHHHHhC
Confidence 48999999999998887653
No 98
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=24.49 E-value=9.7 Score=21.25 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.0
Q ss_pred HHHHHHhhCcccEEEEEeccC
Q psy7619 80 RPMVNHMLHGYNVTIFAYGQT 100 (102)
Q Consensus 80 ~~~v~~~l~G~n~~i~aYGqT 100 (102)
..++..++-|.-+|.|+|+-+
T Consensus 24 ~~~~~~ll~Gllv~~Ft~~iv 44 (85)
T PF15062_consen 24 GSLLSSLLCGLLVCSFTWTIV 44 (85)
T ss_pred hHHHHHHHHHHHHHHhhheeE
Confidence 446677788888999998753
No 99
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=24.40 E-value=1.7e+02 Score=18.38 Aligned_cols=29 Identities=17% Similarity=0.386 Sum_probs=23.0
Q ss_pred HHHHHHhHHHH--HHHhhCcccEEEEEeccC
Q psy7619 72 TEIYENSVRPM--VNHMLHGYNVTIFAYGQT 100 (102)
Q Consensus 72 ~~vy~~~~~~~--v~~~l~G~n~~i~aYGqT 100 (102)
..-|+.....+ ++.+-+|.+.++++.|-.
T Consensus 57 ~~~~~~~~~~i~~~~~~~~g~~V~~l~~GDP 87 (210)
T PF00590_consen 57 EESYDEIAEIIEAIEAAKEGKDVVVLVSGDP 87 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEESBST
T ss_pred hhhhhHHHHHHHHHHHHhccCCEEEeCCCCC
Confidence 33477777777 888889999999998853
No 100
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=24.33 E-value=1.1e+02 Score=18.77 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=18.1
Q ss_pred ceeeecceeeCCCCChHHHHHHh
Q psy7619 56 ARRFTFDAVYGMQATQTEIYENS 78 (102)
Q Consensus 56 ~~~f~FD~Vf~~~~sq~~vy~~~ 78 (102)
...|.|+++|....+-.++.+.+
T Consensus 47 hek~~FeK~F~~~~dp~~l~~~L 69 (140)
T PF14909_consen 47 HEKFRFEKVFPNAVDPAQLADLL 69 (140)
T ss_pred eeEEEeEEEecCCCCHHHHHHHh
Confidence 35699999998888877776654
No 101
>cd03738 SOCS_SOCS4 SOCS (suppressors of cytokine signaling) box of SOCS4-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.
Probab=23.95 E-value=37 Score=17.46 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=9.2
Q ss_pred EEEEEeCCCChhh
Q psy7619 9 KVVVRCRPMNVPE 21 (102)
Q Consensus 9 ~V~vRvRP~~~~e 21 (102)
++=||+|++...|
T Consensus 42 ~~~~r~~~~~~~~ 54 (56)
T cd03738 42 KSKVRVLRIDAPE 54 (56)
T ss_pred cceEEeeecCCcc
Confidence 5568999986554
No 102
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=23.35 E-value=45 Score=19.97 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=11.1
Q ss_pred HHHHHHHhhCcccE
Q psy7619 79 VRPMVNHMLHGYNV 92 (102)
Q Consensus 79 ~~~~v~~~l~G~n~ 92 (102)
..-|++.+++|||+
T Consensus 86 ~dtL~~hai~GfnA 99 (126)
T COG3245 86 KDTLLDHAINGFNA 99 (126)
T ss_pred hHHHHHHHhccccC
Confidence 34578899999986
No 103
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=23.09 E-value=2e+02 Score=18.61 Aligned_cols=31 Identities=10% Similarity=0.357 Sum_probs=23.8
Q ss_pred hHHHHHHhHHHHHHHhhCcccEEEEEeccCC
Q psy7619 71 QTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 71 q~~vy~~~~~~~v~~~l~G~n~~i~aYGqTg 101 (102)
.+.-|++.+..+++.+.+|.+.++++.|-.+
T Consensus 72 ~~~~~~~~~~~i~~~~~~g~~Vv~l~~GDP~ 102 (230)
T TIGR01467 72 LEKAWDEAAEAVAAELEEGRDVAFLTLGDPS 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4456777777777778889999999988653
No 104
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=22.67 E-value=41 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=16.0
Q ss_pred HHHHHHhhCcccEEEEEeccCC
Q psy7619 80 RPMVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 80 ~~~v~~~l~G~n~~i~aYGqTg 101 (102)
..+=..+|-|-.++++|||.++
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~ 291 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSG 291 (341)
T ss_pred cceeeeeeechhheeeeeeccC
Confidence 3444557788899999999854
No 105
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=22.55 E-value=68 Score=17.32 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=13.2
Q ss_pred hhCcccEEEEEeccCC
Q psy7619 86 MLHGYNVTIFAYGQTG 101 (102)
Q Consensus 86 ~l~G~n~~i~aYGqTg 101 (102)
+|.|...+++.|+.+|
T Consensus 36 ~Lc~~~v~lvv~sp~g 51 (77)
T cd00265 36 VLCDAEVALIIFSSSG 51 (77)
T ss_pred eccCCceeEEEEcCCC
Confidence 5788888888888877
No 106
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=22.52 E-value=56 Score=20.58 Aligned_cols=19 Identities=42% Similarity=0.784 Sum_probs=11.4
Q ss_pred HHHhhCcccEEEEEeccCC
Q psy7619 83 VNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 83 v~~~l~G~n~~i~aYGqTg 101 (102)
....+.|.++.|+.||-.|
T Consensus 17 t~~~l~Gk~vvV~GYG~vG 35 (162)
T PF00670_consen 17 TNLMLAGKRVVVIGYGKVG 35 (162)
T ss_dssp H-S--TTSEEEEE--SHHH
T ss_pred CceeeCCCEEEEeCCCccc
Confidence 3457799999999999655
No 107
>PF09178 DUF1945: Domain of unknown function (DUF1945); InterPro: IPR015261 Members of this entry, which are predominantly found in prokaryotic 4-alpha-glucanotransferase, adopt a structure composed of six antiparallel beta-strands, four of which form a beta-sheet and another two form a type I, beta-hairpin. The role of this family of domains, has not, as yet, been defined []. ; PDB: 1LWH_B 1LWJ_B.
Probab=22.30 E-value=52 Score=16.21 Aligned_cols=7 Identities=43% Similarity=0.833 Sum_probs=4.3
Q ss_pred EEeCCCC
Q psy7619 12 VRCRPMN 18 (102)
Q Consensus 12 vRvRP~~ 18 (102)
||++|+.
T Consensus 41 vr~kPy~ 47 (51)
T PF09178_consen 41 VRLKPYK 47 (51)
T ss_dssp EEE-TT-
T ss_pred EEeecce
Confidence 8999975
No 108
>PRK10613 hypothetical protein; Provisional
Probab=22.18 E-value=66 Score=17.43 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=13.2
Q ss_pred CCCChHHHHHHhHHHHH
Q psy7619 67 MQATQTEIYENSVRPMV 83 (102)
Q Consensus 67 ~~~sq~~vy~~~~~~~v 83 (102)
++..|.+||..+++.+-
T Consensus 53 eD~~QA~vf~nTv~QIK 69 (74)
T PRK10613 53 EDETQAAVFSNTVKQIK 69 (74)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 46779999999877653
No 109
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=21.74 E-value=1.2e+02 Score=19.03 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=14.2
Q ss_pred HHHHHHhhCcccEEEEEeccCCC
Q psy7619 80 RPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 80 ~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
..-+...++| ..++|+ ||+|.
T Consensus 26 ~~~l~~~l~~-k~~vl~-G~SGv 46 (161)
T PF03193_consen 26 IEELKELLKG-KTSVLL-GQSGV 46 (161)
T ss_dssp HHHHHHHHTT-SEEEEE-CSTTS
T ss_pred HHHHHHHhcC-CEEEEE-CCCCC
Confidence 3445677788 666666 99984
No 110
>PRK06835 DNA replication protein DnaC; Validated
Probab=21.69 E-value=1.7e+02 Score=20.56 Aligned_cols=29 Identities=24% Similarity=0.496 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 72 TEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 72 ~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
+.+++. +...++.+-.+. -.++-||.||+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~Gt 194 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGT 194 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCC
Confidence 344544 355777666554 45888999996
No 111
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=21.58 E-value=1.8e+02 Score=20.40 Aligned_cols=17 Identities=24% Similarity=0.722 Sum_probs=13.5
Q ss_pred HHHHhhCcccEEEEEec
Q psy7619 82 MVNHMLHGYNVTIFAYG 98 (102)
Q Consensus 82 ~v~~~l~G~n~~i~aYG 98 (102)
-.-.+.+|||-++..||
T Consensus 47 W~~eL~~GFnlL~YG~G 63 (326)
T PF04084_consen 47 WMFELSQGFNLLFYGYG 63 (326)
T ss_pred HHHHHhCCCeEEEEecC
Confidence 34567799999998887
No 112
>COG1162 Predicted GTPases [General function prediction only]
Probab=21.46 E-value=96 Score=21.66 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=14.1
Q ss_pred HHHHHhhCcccEEEEEeccCC
Q psy7619 81 PMVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 81 ~~v~~~l~G~n~~i~aYGqTg 101 (102)
..+...|.|. .++|+ ||+|
T Consensus 156 ~~l~~~l~~~-~svl~-GqSG 174 (301)
T COG1162 156 EELAELLAGK-ITVLL-GQSG 174 (301)
T ss_pred HHHHHHhcCC-eEEEE-CCCC
Confidence 4456777887 67777 9998
No 113
>PRK01530 hypothetical protein; Reviewed
Probab=21.27 E-value=95 Score=18.08 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=15.6
Q ss_pred CCCCCceEEEEEeCCCChhh
Q psy7619 2 KSYDENIKVVVRCRPMNVPE 21 (102)
Q Consensus 2 ~~~~~~i~V~vRvRP~~~~e 21 (102)
.+..+.+.+.||+.|-..+.
T Consensus 8 ~~~~~gv~l~V~V~P~Akk~ 27 (105)
T PRK01530 8 NSSSHQALLNLKVKPNAKQN 27 (105)
T ss_pred cCCCCcEEEEEEEeeCCCcc
Confidence 35678899999999966544
No 114
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=21.26 E-value=78 Score=17.14 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=13.2
Q ss_pred CCCChHHHHHHhHHHHH
Q psy7619 67 MQATQTEIYENSVRPMV 83 (102)
Q Consensus 67 ~~~sq~~vy~~~~~~~v 83 (102)
++..|.+||..+++.+-
T Consensus 53 eD~~QAevF~nTi~QIK 69 (74)
T PF10769_consen 53 EDPKQAEVFKNTIKQIK 69 (74)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 46779999998877653
No 115
>PRK01310 hypothetical protein; Validated
Probab=21.12 E-value=72 Score=18.51 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=14.7
Q ss_pred CCCCceEEEEEeCCCChhh
Q psy7619 3 SYDENIKVVVRCRPMNVPE 21 (102)
Q Consensus 3 ~~~~~i~V~vRvRP~~~~e 21 (102)
..++.+.+.||+.|-..+.
T Consensus 7 ~~~~~~~i~v~V~P~A~~~ 25 (104)
T PRK01310 7 YSADGLRLAVRLTPRGGRD 25 (104)
T ss_pred ECCCcEEEEEEEeeCCCcc
Confidence 4567899999999966544
No 116
>PRK06921 hypothetical protein; Provisional
Probab=20.82 E-value=2e+02 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=14.1
Q ss_pred HHHHHHHhhC---cccEEEEEeccCCC
Q psy7619 79 VRPMVNHMLH---GYNVTIFAYGQTGT 102 (102)
Q Consensus 79 ~~~~v~~~l~---G~n~~i~aYGqTgS 102 (102)
+...++.+-+ +....++-||++|+
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~ 128 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGS 128 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCC
Confidence 3445554432 23345778899995
No 117
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.57 E-value=2.1e+02 Score=19.37 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=17.9
Q ss_pred HHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 76 ENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 76 ~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
-..+.||+ ..+.--+..+--||+|++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~ 204 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSS 204 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCC
Confidence 34456666 555666677888999985
No 118
>PRK08939 primosomal protein DnaI; Reviewed
Probab=20.50 E-value=1.7e+02 Score=20.20 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=24.7
Q ss_pred eecceeeCCCCChHHHHHHhHHHHHHHhhCc-ccEEEEEeccCCC
Q psy7619 59 FTFDAVYGMQATQTEIYENSVRPMVNHMLHG-YNVTIFAYGQTGT 102 (102)
Q Consensus 59 f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G-~n~~i~aYGqTgS 102 (102)
.+||.+-.....+..++.. +...++....| ..-.++-||.+|+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~ 167 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGV 167 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCC
Confidence 4555533233356667664 36666665543 2235788999985
No 119
>PRK05576 cobalt-precorrin-2 C(20)-methyltransferase; Validated
Probab=20.41 E-value=1.8e+02 Score=18.86 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=22.7
Q ss_pred HHHHHHhHHHHHHHhhCcccEEEEEeccCC
Q psy7619 72 TEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101 (102)
Q Consensus 72 ~~vy~~~~~~~v~~~l~G~n~~i~aYGqTg 101 (102)
..-|+..+..+++.+.+|.+.++++.|-.+
T Consensus 73 ~~~~~~~~~~i~~~~~~g~~V~~l~~GDP~ 102 (229)
T PRK05576 73 EAVWKENAEEIAAEAEEGKNVAFITLGDPN 102 (229)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCcCcc
Confidence 345667777777777899999999988643
No 120
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=20.12 E-value=96 Score=23.60 Aligned_cols=42 Identities=21% Similarity=0.425 Sum_probs=27.6
Q ss_pred CceeeecceeeCCCCChHHHHHHhHHHHHHHhhCcccEEEEEeccCCC
Q psy7619 55 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 55 ~~~~f~FD~Vf~~~~sq~~vy~~~~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
....|+||.+.+....-.++-+. + .-..+.+++|+-+|-||+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~-----a-kr~A~tdstVLi~GESGT 279 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLEL-----A-KRIAKTDSTVLILGESGT 279 (560)
T ss_pred cccccchhhhccCCHHHHHHHHH-----H-HhhcCCCCcEEEecCCCc
Confidence 34568899888755433332222 1 335688999999999996
No 121
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=20.02 E-value=1e+02 Score=20.41 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=13.8
Q ss_pred HHHHHHHhhCcccEEEEEeccCCC
Q psy7619 79 VRPMVNHMLHGYNVTIFAYGQTGT 102 (102)
Q Consensus 79 ~~~~v~~~l~G~n~~i~aYGqTgS 102 (102)
...++...+++....+++ |.|||
T Consensus 116 ~~~~l~~~v~~~~~ili~-G~tGS 138 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILIS-GPTGS 138 (270)
T ss_dssp HHHHHHHCHHTTEEEEEE-ESTTS
T ss_pred HHHHHhhccccceEEEEE-CCCcc
Confidence 344555555555555555 99997
No 122
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=20.02 E-value=63 Score=20.46 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=13.8
Q ss_pred eeCCCCChHHHHHHhHHHHHH
Q psy7619 64 VYGMQATQTEIYENSVRPMVN 84 (102)
Q Consensus 64 Vf~~~~sq~~vy~~~~~~~v~ 84 (102)
++-|+..|.+||++.+.|.+.
T Consensus 66 ~L~PD~~q~~vy~~~I~p~l~ 86 (165)
T PF07991_consen 66 LLLPDEVQPEVYEEEIAPNLK 86 (165)
T ss_dssp E-S-HHHHHHHHHHHHHHHS-
T ss_pred EeCChHHHHHHHHHHHHhhCC
Confidence 345778899999877666643
No 123
>PRK04021 hypothetical protein; Reviewed
Probab=20.00 E-value=79 Score=17.89 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=14.7
Q ss_pred CCCCCceEEEEEeCCCChhh
Q psy7619 2 KSYDENIKVVVRCRPMNVPE 21 (102)
Q Consensus 2 ~~~~~~i~V~vRvRP~~~~e 21 (102)
+..++.+.+.||+.|-..+.
T Consensus 3 ~~~~~~v~l~v~v~P~a~~~ 22 (92)
T PRK04021 3 KETKEGVILQVYVQPKAKEN 22 (92)
T ss_pred EEeCCcEEEEEEEeeCCCcc
Confidence 34567899999999965443
Done!