RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7619
(102 letters)
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 110 bits (277), Expect = 1e-30
Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ NI+VVVRCRP N ERK V+++ + K + + + +TFD V
Sbjct: 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKV 55
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+G +A Q E+Y V P+++ +L GYN TIFAYGQTGT
Sbjct: 56 FGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGT 93
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 106 bits (268), Expect = 2e-29
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVR RP+N E+ +V+ + P+ ++FTFD V+
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGK-----TLTVRSPKNRQGEKKFTFDKVFD 55
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A+Q +++E + P+V+ +L GYN TIFAYGQTG+
Sbjct: 56 ATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGS 91
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 106 bits (266), Expect = 3e-29
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 8/99 (8%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGK--ARRFTFDA 63
EN+KVVVRCRP+N E+ ++ +D + +++ P+ K + FTFDA
Sbjct: 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVH------NPKADAKEPPKVFTFDA 54
Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
VY +TQ ++Y + RP+V+ +L GYN TIFAYGQTGT
Sbjct: 55 VYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGT 93
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 90.7 bits (226), Expect = 3e-23
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 13 RCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQT 72
R RP+N E+ +++ +D T G+ + FTFD V+ +ATQ
Sbjct: 1 RVRPLNEREKSRGSSDIVNVDETDSEDKESVVIT-----NKGREKTFTFDRVFDPEATQE 55
Query: 73 EIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+YE + +P+V +L GYNVTIFAYGQTG+
Sbjct: 56 FVYEETAKPLVESVLEGYNVTIFAYGQTGS 85
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 90.4 bits (225), Expect = 3e-23
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 6/96 (6%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVR RP+N E K+ E+ I +D K + K + + FTFD V+
Sbjct: 1 NIRVVVRIRPLNGRESKSE-ESCITVDDNK-----TVTLTPPKDGRKAGPKSFTFDHVFD 54
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+TQ ++YE + +P+V +L GYN TIFAYGQTG+
Sbjct: 55 PNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGS 90
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 88.1 bits (219), Expect = 3e-22
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 12/94 (12%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
++V VR RP+ E ++ + C+S+ ++ G + FTFD V+
Sbjct: 3 VRVAVRVRPLLPKE---------LLEGCQVCVSVVPGEPQV---TVGTDKSFTFDYVFDP 50
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
+Q E+Y V P+V+ + GYN T+ AYGQTG
Sbjct: 51 STSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTG 84
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 85.8 bits (213), Expect = 2e-21
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 9/101 (8%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCL------SIQYSTDRLKPRQPGKARRFT 60
++ V VR RP N E++ V+K+ + L + R K +++
Sbjct: 1 SLTVAVRVRPFNEKEKQEGTRRVVKV-VDDRMLVFDPKDEEDAFRNLRARR--NKELKYS 57
Query: 61 FDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
FD V+ +TQ E+YEN+ +P+V+ +L+GYN T+FAYG TG
Sbjct: 58 FDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATG 98
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 84.3 bits (209), Expect = 5e-21
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ NIKVV R RP+N E ++++K +SI S D + F+FD V
Sbjct: 1 ECNIKVVCRFRPLNEKEELRGSKSIVKFPGED-TVSIAGSDD---------GKTFSFDRV 50
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
+ TQ ++Y +P+V+ +L+GYN TIFAYGQTG
Sbjct: 51 FPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTG 87
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 76.7 bits (189), Expect = 4e-18
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
N++VVVR RP + + V ID+ + + PR G+ +++ FDA YG
Sbjct: 1 NVRVVVRVRPF-LDCEEDSSSCVRGIDSDQGQAKSVEIEN---PRNRGETKKYQFDAFYG 56
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ TQ +I+ V+P+V H+L G N T+FAYG TG
Sbjct: 57 TECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGA 92
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 76.5 bits (189), Expect = 5e-18
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDT-TKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
NI+V R RP+ P +VI + + T GK + F+FD V+
Sbjct: 3 NIRVFCRVRPLL-PSESTEYSSVISFPDEDGGTIELSKGT--------GKKKSFSFDRVF 53
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A+Q +++E V P+V L GYNV IFAYGQTG+
Sbjct: 54 DPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGS 89
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 75.8 bits (187), Expect = 9e-18
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKID---TTKKCLSIQYSTDRLKPRQPGKARRFTFD 62
N+KV VR RP N E+ + ++++ TT K +T + K + F+FD
Sbjct: 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRK-------KPKSFSFD 53
Query: 63 AVY-------GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
Y A+Q +++E+ R +++H GYNV +FAYGQTG
Sbjct: 54 HSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTG 99
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 70.8 bits (174), Expect = 5e-16
Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVI-KIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
IKV VR RP+N R++ E V ID + + + + + FTFD V+
Sbjct: 1 KIKVSVRVRPLN--PRESDNEQVAWSID----------NDNTISLEESTPGQSFTFDRVF 48
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G ++T E+YE +P+V L GYN TIFAYGQT +
Sbjct: 49 GGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSS 85
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 68.4 bits (168), Expect = 3e-15
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
I V VR RP+N E +V+ ++ +++ ++ + + F FD V+
Sbjct: 1 MKITVAVRKRPLNDKELSKGETDVVSCES-NPTVTVHEPKTKVDLTKYIEKHTFRFDYVF 59
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
T E+Y ++V+P++ H+ G T FAYGQTG+
Sbjct: 60 DEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGS 96
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 64.8 bits (158), Expect = 9e-14
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+IK +R P + ER + + K K + FD V+
Sbjct: 22 SDIKSTIRIIPGELGERLINTSKKSHVSLEK-----------------SKEGTYAFDKVF 64
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
G ATQ ++YE +++P+++ +L GYN T+FAYGQTG+
Sbjct: 65 GPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGS 101
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 63.7 bits (155), Expect = 2e-13
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKID--TTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+KVVVR RP N E +K T S P R FTFD V
Sbjct: 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS--------HP-----PRMFTFDHV 48
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q +++++ +P+V L GYN +IFAYGQTG+
Sbjct: 49 ADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGS 86
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 62.1 bits (151), Expect = 7e-13
Identities = 36/96 (37%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPG-KARRFTFDAVY 65
I+V VR RP K + IK+ K +S D + F FD V+
Sbjct: 2 IQVFVRVRP---TPTKQG--SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVF 56
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
A+Q E+YE +P+V+ L GYN TIFAYGQTG
Sbjct: 57 H-NASQEEVYETVAKPVVDSALDGYNGTIFAYGQTG 91
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 60.5 bits (147), Expect = 3e-12
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIK-IDTTKKCLSIQYSTDRLKPRQPG--KARRFTFD 62
+ +KV +R RP++ E ++ E I+ I++T L + K + G K +F+F
Sbjct: 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFS 60
Query: 63 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTG 101
V+G TQ E +E + P+V +L G N +F YG T
Sbjct: 61 KVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTN 99
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 58.4 bits (141), Expect = 2e-11
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 17/98 (17%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
D +KV+VR +P+N K +I + L+I T FTFD++
Sbjct: 97 DSGVKVIVRMKPLN----KGEEGEMIVQKMSNDSLTINGQT-------------FTFDSI 139
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
++TQ +I++ P+V + L G+N ++FAYGQTG+
Sbjct: 140 ADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGS 177
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 44.8 bits (106), Expect = 6e-07
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 77 NSVRPMVNHMLHGYNVTIFAYGQTGT 102
V P++ L GYNV IFAYGQTG+
Sbjct: 10 RDVGPLLQSALDGYNVCIFAYGQTGS 35
>gnl|CDD|166000 PLN02359, PLN02359, ethanolaminephosphotransferase.
Length = 389
Score = 25.9 bits (57), Expect = 4.0
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 60 TFDAVYGMQATQTEIYENSVRPMVNHMLHG 89
TFDAV G QA +T NS P+ HG
Sbjct: 93 TFDAVDGKQARRT----NSSSPLGELFDHG 118
>gnl|CDD|166679 PLN03039, PLN03039, ethanolaminephosphotransferase; Provisional.
Length = 337
Score = 25.7 bits (56), Expect = 4.4
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 60 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYN-----VTIFAYGQTG 101
TFDAV G QA +T NS P+ HG + A+G T
Sbjct: 41 TFDAVDGKQARRT----NSSSPLGELFDHGCDALACAFEAMAFGSTA 83
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 25.3 bits (56), Expect = 6.9
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 71 QTEIYENSVRPMVNHMLHGYN-VTIFAYGQTGT 102
Q E ++RP+ L G +F YG+TGT
Sbjct: 23 QIEELAKALRPI----LRGSRPSNVFIYGKTGT 51
>gnl|CDD|148296 pfam06603, UpxZ, UpxZ family of transcription anti-terminator
antagonists. The UpxZ family of proteins acts to
inhibit transcription of heterologous capsular
polysaccharide loci in Bacteroides species by
interfering with the action of the UpxY family of
transcription anti-terminators. As antagonists of
polysaccharide locus-specific UpxY transcription
anti-terminators, the UpxZ proteins exert a
hierarchical level of regulation, insuring that only
one of the multiple phase-variable capsular
polysaccharide loci per cell characteristic of this
genus is transcribed at a time.
Length = 106
Score = 24.6 bits (54), Expect = 7.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 86 MLHGYNVTIFAYG 98
+L GYN TI+ G
Sbjct: 59 LLMGYNATIYNNG 71
>gnl|CDD|223049 PHA03334, PHA03334, putative DNA polymerase catalytic subunit;
Provisional.
Length = 1545
Score = 25.2 bits (55), Expect = 7.4
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 20 PERKAHVENVI-----KIDTTKKCLSIQYSTDRLKPRQPGKARRFT 60
P+ A V + KID ++ Y+ R KP +P RRFT
Sbjct: 681 PDCTARVRGWVVFDWKKIDRGFGKATLMYTILRTKPEEPSW-RRFT 725
>gnl|CDD|200361 TIGR04110, heme_HutZ, heme utilization protein HutZ. Members of
this family are heme utilization proteins, typically
designated HutZ. They are members of the PPOX family
(pfam01243) and, except for the lack of an N-terminal
extension, are closely related to one form of heme
oxidase (1.14.99.3), HugZ (TIGR04109). Members typically
are found in a three-gene operon with radical SAM enzyme
HutW and a protein of unknown function, HutX.
Length = 168
Score = 24.7 bits (54), Expect = 8.0
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 34 TTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 82
+S+ D + R +R TFDA + +E + ++ +
Sbjct: 65 KAVPKVSLMLIEDEAEARTIFARKRLTFDATAELVERDSERWTQAIAAL 113
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,977,063
Number of extensions: 385638
Number of successful extensions: 314
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 29
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (23.9 bits)