RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7619
(102 letters)
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 130 bits (328), Expect = 3e-38
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+NI+VVVRCRP N+ ERKA ++++ D +K +S++ + +TFD V
Sbjct: 7 GKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMV 62
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+G Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 100
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 128 bits (323), Expect = 2e-37
Identities = 39/99 (39%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDA 63
+NIKV+VRCRP+N E + + N+I++D + + Q K R FTFDA
Sbjct: 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDA 62
Query: 64 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
VY + I++ S +P+++ +L G+N TIFAYGQTG
Sbjct: 63 VYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGA 101
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 128 bits (324), Expect = 2e-37
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
++NI+V VR RP+N ER V+ + ++ ++ ++FTFD
Sbjct: 22 NQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTR-------HTLDSKLTKKFTFDRS 74
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+G ++ Q ++Y V P++ +L+GYN T+FAYGQTGT
Sbjct: 75 FGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGT 112
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 126 bits (320), Expect = 5e-37
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
E+++VVVRCRPMN E+ A + V+ +D +S++ + FTFDAV
Sbjct: 20 SESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHE----MPKTFTFDAV 75
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Y A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGT
Sbjct: 76 YDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGT 113
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 126 bits (318), Expect = 9e-37
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 1 MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFT 60
M S +IKVV R RP N E ++ + ++ C + ++ FT
Sbjct: 1 MSSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCT--------VDSKEAQG--SFT 50
Query: 61 FDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
FD V+ M Q++I++ S++P V+ +L+GYN T+FAYGQTG
Sbjct: 51 FDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGA 92
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 125 bits (317), Expect = 2e-36
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
Query: 1 MKSYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFT 60
+ ++V VR RP A ++ + R + ++
Sbjct: 16 FQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIA-------NWRNHQETLKYQ 68
Query: 61 FDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
FDA YG ++TQ +IY SV+P++ H+L G N ++ AYG TG
Sbjct: 69 FDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGA 110
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 124 bits (313), Expect = 3e-36
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ ++V +R RP+ E ++ ++++ +++ G+ R F F V
Sbjct: 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL------------GRDRHFGFHVV 57
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A Q +Y+ V+P++ G+N T+FAYGQTG+
Sbjct: 58 LAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGS 95
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 121 bits (307), Expect = 4e-35
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+++IKVV R RP+N E KA + V+K + I + + + FD V
Sbjct: 10 EDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG-----------KVYLFDKV 58
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ A+Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 59 FKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSS 96
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 121 bits (306), Expect = 7e-35
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ I V VR RP+N E +VI I + K L + ++ + + + F FD
Sbjct: 50 EHRICVCVRKRPLNKQELAKKEIDVISIPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFA 108
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 146
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 120 bits (302), Expect = 3e-34
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ I V VR RP+N E +VI + + K L + ++ + + + F FD
Sbjct: 70 EHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFA 128
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 166
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 118 bits (297), Expect = 6e-34
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ NIKV+ R RP+N E + + K + ++ + FD V
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRV 51
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ +Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 52 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 89
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 117 bits (296), Expect = 1e-33
Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 11/108 (10%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCL-----------SIQYSTDRLKPRQPG 54
++KVVVR RP N E+ A V+ + + + +T++ ++
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQN 69
Query: 55 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
K +F FDAV+ +TQ+E++E++ +P++ L+GYN T+ AYG TG
Sbjct: 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGA 117
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 115 bits (290), Expect = 9e-33
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
+KV VR RPMN E H + V+ +D K L+ +T+ K G+ + F +D +
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPV-NTNLSKGDARGQPKVFAYDHCFW 60
Query: 67 MQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A Q +++ ++ + GYN IFAYGQTG+
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGS 104
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 114 bits (288), Expect = 2e-32
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ + V VR RP+N E + T + Q ++ F FD V
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIY-----------QVDGSKSFNFDRV 51
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ T +YE P+++ + GYN TIFAYGQT +
Sbjct: 52 FHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTAS 89
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 113 bits (285), Expect = 6e-32
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
IKVVVR RP++ E+K ++I + L I ++ + + F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 68 QATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGT 102
+YEN+++P++ + +G + FAYGQTG+
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGS 96
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 112 bits (283), Expect = 9e-32
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+++ VR P + +V++ S+ F FD
Sbjct: 21 LSAVRIAVREAPYRQFLGRRE-PSVVQFPPWSDGKSLI-----------VDQNEFHFDHA 68
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ +Q E+Y+ + P+V+ +L G+ T AYGQTGT
Sbjct: 69 FPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGT 106
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 111 bits (280), Expect = 2e-31
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 7 NIKVVVRCRPMNVPERKA-HVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
NI+V+ R RP+ + + N + D + + GK F D V+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI--------IHLLHKGKPVSFELDKVF 56
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
QA+Q ++++ V+ +V + G+NV IFAYGQTG
Sbjct: 57 SPQASQQDVFQ-EVQALVTSCIDGFNVCIFAYGQTGA 92
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 112 bits (281), Expect = 6e-31
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQ-------YSTDRLKPRQPGKAR 57
N++VVVR R E + + E ++++D + S+ + R+ + +
Sbjct: 37 GANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEK 96
Query: 58 RFTFDAVYGMQ-------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
FTFD + ATQ +Y++ ++H GY+ IFAYGQTG+
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGS 148
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 110 bits (277), Expect = 9e-31
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 15/106 (14%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
++KV VR RP N E + +I++ + + + +P++ K+ F+FD
Sbjct: 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI-----VNPKQPKETPKS--FSFDYS 55
Query: 65 YGMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Y A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 56 YWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGA 101
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 110 bits (277), Expect = 1e-30
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
I+V R RP+ E A N I+ + KA++ +D V+
Sbjct: 5 GKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEH---------LWKDDKAKQHMYDRVF 55
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
ATQ +++E + +V + GYNV IFAYGQTG+
Sbjct: 56 DGNATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGS 91
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 110 bits (277), Expect = 2e-30
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 6 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 65
+NI+V R RP E D + +++ + + + + F+FD V+
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYHDES----TVELQSIDAQAKSKMGQQIFSFDQVF 114
Query: 66 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 115 HPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 150
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 108 bits (272), Expect = 4e-30
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD--RLKPRQPGKARRFTFD 62
+ + VR +P + + +I+ K+ + I D R F D
Sbjct: 22 RKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLD 76
Query: 63 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
V A+Q +YE + +V+ L GYN TI YGQTG
Sbjct: 77 GVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGA 115
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 108 bits (271), Expect = 7e-30
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSI----------QYSTDRLKPRQPGKA 56
NI+V R RP+ E ++ + P
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPR 82
Query: 57 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
F+FD V+ + Q E++E + +V L GY V IFAYGQTG+
Sbjct: 83 HDFSFDRVFPPGSGQDEVFE-EIAMLVQSALDGYPVCIFAYGQTGS 127
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 107 bits (270), Expect = 8e-30
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+V R RP + + + +++ F FD ++
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVH--EFKFDKIFD 61
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 62 QQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 96
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 106 bits (268), Expect = 1e-29
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+V R RP + E + +I+ K + + F FD ++
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTIN---RNEGRILSYNFQFDMIFE 62
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
T EI+E +R +V L GYNV IFAYGQTG+
Sbjct: 63 PSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGS 97
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 106 bits (268), Expect = 3e-29
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+V +R RP + + + S + K + + F FD ++
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQ--SMEVTKIQNTAQVHEFKFDKIFD 117
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 118 QQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGS 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 0.43
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 36 KKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQAT 70
K+ +++ LK A A+ ++AT
Sbjct: 19 KQ--ALKKLQASLKLYADDSA-----PAL-AIKAT 45
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical
bundle, structural genomics, PSI, protein structure
initiative; 1.60A {Mycobacterium tuberculosis} SCOP:
a.79.1.1
Length = 156
Score = 26.2 bits (58), Expect = 1.6
Identities = 6/32 (18%), Positives = 12/32 (37%)
Query: 45 TDRLKPRQPGKARRFTFDAVYGMQATQTEIYE 76
+DR R +AR+ ++ + E
Sbjct: 2 SDRKPVRGRHQARKRAVALLFEAEVRGISAAE 33
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT
site, phage lambda, lambdan antitermina
antitermination; HET: NHE; 1.30A {Escherichia coli}
PDB: 3d3c_A 3imq_A 1ey1_A
Length = 141
Score = 24.2 bits (53), Expect = 9.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 49 KPRQPGKARRFTFDAVYGMQATQTEIYE 76
+P +AR A+Y Q +Q +I +
Sbjct: 4 EPAARRRARECAVQALYSWQLSQNDIAD 31
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,514,617
Number of extensions: 72719
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 29
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.4 bits)