RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7619
(102 letters)
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 87.3 bits (215), Expect = 1e-22
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ I V VR RP+N E +VI + + K L + ++ + + + F FD
Sbjct: 29 EHRICVCVRKRPLNKQELAKKEIDVISVPS-KCLLLVHEPKLKVDLTKYLENQAFCFDFA 87
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ A+ +Y + RP+V + G T FAYGQTG+
Sbjct: 88 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 125
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 83.4 bits (205), Expect = 4e-21
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 3 SYDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFD 62
S +IKVV R RP N E ++ + ++ C FTFD
Sbjct: 2 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV----------DSKEAQGSFTFD 51
Query: 63 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
V+ M Q++I++ S++P V+ +L+GYN T+FAYGQTG
Sbjct: 52 RVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGA 91
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 83.1 bits (204), Expect = 5e-21
Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+VVVRCRP N+ ERKA ++++ D +K +S++ + +TFD V+G
Sbjct: 1 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTG----GLADKSSRKTYTFDMVFG 56
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q ++Y + V P+++ ++ GYN TIFAYGQTGT
Sbjct: 57 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGT 92
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 78.9 bits (193), Expect = 1e-19
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
IKVVVR RP++ E+K ++I + L I ++ + + F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKN-NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 68 QATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGT 102
+YEN+++P++ + +G + FAYGQTG+
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGS 96
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 76.5 bits (187), Expect = 9e-19
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 5 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 64
+ NIKV+ R RP+N E + + K + ++ + FD V
Sbjct: 4 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRV 49
Query: 65 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
+ +Q ++Y + + +V +L GYN TIFAYGQT +
Sbjct: 50 FQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSS 87
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 73.0 bits (178), Expect = 2e-17
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+V R RP E D + +++ + + + + F+FD V+
Sbjct: 46 NIRVFCRIRPPLESEENRMCCTWTYHDES----TVELQSIDAQAKSKMGQQIFSFDQVFH 101
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
++Q++I+E V P++ L GYN+ IFAYGQTG+
Sbjct: 102 PLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGS 136
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 72.7 bits (177), Expect = 3e-17
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 8 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 67
I+V R RP+ E A N I+ + + KA++ +D V+
Sbjct: 2 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHL---------WKDDKAKQHMYDRVFDG 52
Query: 68 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
ATQ +++E + +V + GYNV IFAYGQTG+
Sbjct: 53 NATQDDVFE-DTKYLVQSAVDGYNVCIFAYGQTGS 86
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 70.4 bits (171), Expect = 2e-16
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 66
NI+V R RP + ++I ++ +Q S + K + + F FD ++
Sbjct: 2 NIRVYCRIRPALKNLENSD-TSLINVNEFDDNSGVQ-SMEVTKIQNTAQVHEFKFDKIFD 59
Query: 67 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
Q T ++++ V +V L GYNV IFAYGQTG+
Sbjct: 60 QQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGS 94
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 67.3 bits (163), Expect = 3e-15
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 17/105 (16%)
Query: 7 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQP-GKARRFTFDAVY 65
++KV VR RP N E + +I++ + + + P+QP + F+FD Y
Sbjct: 2 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 53
Query: 66 GM--------QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGT 102
A+Q ++Y + M+ H GYNV IFAYGQTG
Sbjct: 54 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGA 98
>d1eyfa_ g.48.1.1 (A:) Ada DNA repair protein, N-terminal domain
(N-Ada 10) {Escherichia coli [TaxId: 562]}
Length = 92
Score = 23.3 bits (50), Expect = 4.1
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 13 RCRPMNVPERKAHVENVIK 31
RC+P R+ ++ +
Sbjct: 71 RCQPDKANPRQHRLDKITH 89
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 372,297
Number of extensions: 14181
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 14
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.6 bits)