Query psy7620
Match_columns 189
No_of_seqs 164 out of 1066
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 23:01:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00027 60S ribosomal protein 100.0 7E-65 1.5E-69 415.4 23.3 185 1-186 1-188 (190)
2 PRK05518 rpl6p 50S ribosomal p 100.0 1.2E-64 2.5E-69 410.9 22.9 178 1-183 1-178 (180)
3 PTZ00179 60S ribosomal protein 100.0 1.2E-63 2.6E-68 407.8 22.3 179 4-186 3-187 (189)
4 TIGR03653 arch_L6P archaeal ri 100.0 1.5E-62 3.3E-67 395.5 22.6 169 7-181 1-170 (170)
5 COG0097 RplF Ribosomal protein 100.0 7.6E-57 1.6E-61 362.4 20.7 172 1-184 1-175 (178)
6 CHL00140 rpl6 ribosomal protei 100.0 1.6E-55 3.5E-60 357.3 21.9 171 1-183 1-174 (178)
7 TIGR03654 L6_bact ribosomal pr 100.0 5.8E-54 1.2E-58 347.3 22.4 167 5-182 3-172 (175)
8 PRK05498 rplF 50S ribosomal pr 100.0 2.8E-53 6E-58 344.2 22.6 171 1-183 1-174 (178)
9 KOG3254|consensus 100.0 4.8E-45 1E-49 292.0 13.4 168 5-182 34-206 (211)
10 KOG3255|consensus 99.9 2.8E-28 6E-33 197.0 3.3 176 1-184 1-179 (179)
11 PF00347 Ribosomal_L6: Ribosom 99.8 2.6E-19 5.7E-24 125.7 7.6 72 12-85 1-77 (77)
12 PF00347 Ribosomal_L6: Ribosom 98.0 5.1E-06 1.1E-10 57.8 3.5 66 100-170 4-75 (77)
13 cd06479 ACD_HspB7_like Alpha c 72.7 11 0.00023 26.6 5.0 43 13-56 21-78 (81)
14 PF12970 DUF3858: Domain of Un 71.8 15 0.00032 28.0 5.8 33 8-40 41-73 (116)
15 cd06497 ACD_alphaA-crystallin_ 71.2 11 0.00023 26.7 4.8 19 13-31 23-41 (86)
16 CHL00140 rpl6 ribosomal protei 67.3 49 0.0011 26.7 8.4 74 98-176 12-101 (178)
17 TIGR03654 L6_bact ribosomal pr 63.2 53 0.0011 26.5 7.8 73 100-177 13-101 (175)
18 PF00011 HSP20: Hsp20/alpha cr 61.7 27 0.00058 24.7 5.4 45 13-58 20-86 (102)
19 cd00298 ACD_sHsps_p23-like Thi 61.3 26 0.00056 22.4 4.9 20 13-32 19-38 (80)
20 cd06481 ACD_HspB9_like Alpha c 58.0 33 0.00071 24.3 5.2 19 13-31 20-38 (87)
21 PRK05498 rplF 50S ribosomal pr 56.7 90 0.0019 25.1 8.2 73 100-177 14-102 (178)
22 cd06469 p23_DYX1C1_like p23_li 53.5 54 0.0012 21.8 5.6 45 13-58 19-67 (78)
23 COG0097 RplF Ribosomal protein 52.9 16 0.00035 29.9 3.2 25 8-32 113-138 (178)
24 cd02393 PNPase_KH Polynucleoti 52.5 38 0.00082 22.3 4.5 30 128-158 31-60 (61)
25 TIGR03653 arch_L6P archaeal ri 50.7 1.3E+02 0.0028 24.2 8.1 58 99-161 8-71 (170)
26 PRK05518 rpl6p 50S ribosomal p 49.8 21 0.00045 29.1 3.4 22 9-30 120-141 (180)
27 cd06470 ACD_IbpA-B_like Alpha- 49.8 48 0.001 23.3 5.0 18 13-30 24-41 (90)
28 COG0071 IbpA Molecular chapero 48.1 46 0.00099 25.6 5.0 46 13-59 63-132 (146)
29 cd06477 ACD_HspB3_Like Alpha c 42.5 18 0.00039 25.6 1.8 19 13-31 20-38 (83)
30 cd06471 ACD_LpsHSP_like Group 41.7 96 0.0021 21.6 5.5 19 13-31 23-41 (93)
31 cd06478 ACD_HspB4-5-6 Alpha-cr 40.2 24 0.00053 24.6 2.1 18 13-30 20-37 (83)
32 cd06476 ACD_HspB2_like Alpha c 40.1 20 0.00044 25.2 1.7 19 13-31 20-38 (83)
33 cd06498 ACD_alphaB-crystallin_ 39.7 21 0.00046 25.1 1.8 18 13-30 20-37 (84)
34 cd06480 ACD_HspB8_like Alpha-c 38.5 22 0.00047 25.8 1.7 19 13-31 28-46 (91)
35 cd06472 ACD_ScHsp26_like Alpha 38.0 1.3E+02 0.0029 20.9 5.8 19 13-31 22-41 (92)
36 PTZ00027 60S ribosomal protein 36.9 2E+02 0.0042 23.6 7.3 59 98-161 13-79 (190)
37 cd06482 ACD_HspB10 Alpha cryst 33.5 30 0.00065 24.7 1.7 18 13-30 21-38 (87)
38 cd06526 metazoan_ACD Alpha-cry 33.5 29 0.00063 23.9 1.7 19 13-31 20-38 (83)
39 PTZ00179 60S ribosomal protein 33.3 2.6E+02 0.0055 22.9 7.4 59 98-161 12-78 (189)
40 PF05137 PilN: Fimbrial assemb 32.3 1.1E+02 0.0023 20.3 4.3 41 125-165 9-52 (78)
41 cd06475 ACD_HspB1_like Alpha c 31.4 37 0.00081 23.9 1.9 18 13-30 23-40 (86)
42 cd01231 PH_Lnk LNK-family Plec 30.2 1.1E+02 0.0024 22.9 4.3 38 123-160 67-106 (107)
43 COG1072 CoaA Panthothenate kin 29.0 38 0.00083 29.7 2.0 35 116-152 167-201 (283)
44 PRK14424 acylphosphatase; Prov 28.2 41 0.00088 24.4 1.7 58 86-161 11-68 (94)
45 cd00068 GGL G protein gamma su 27.6 46 0.001 21.8 1.7 28 147-176 18-46 (57)
46 PF10162 G8: G8 domain; Inter 26.3 2.3E+02 0.005 21.2 5.7 30 7-39 12-46 (125)
47 PF00712 DNA_pol3_beta: DNA po 25.4 1.2E+02 0.0027 22.2 4.0 50 5-56 22-71 (120)
48 PF13476 AAA_23: AAA domain; P 25.3 1E+02 0.0022 23.6 3.6 26 109-135 1-26 (202)
49 COG3466 ISA1214 Putative trans 25.0 1.3E+02 0.0029 19.6 3.4 39 1-40 1-40 (52)
50 KOG4119|consensus 24.3 49 0.0011 23.1 1.4 31 145-177 24-55 (71)
51 PF00013 KH_1: KH domain syndr 23.2 1.7E+02 0.0036 18.5 3.8 19 139-158 42-60 (60)
52 PF00338 Ribosomal_S10: Riboso 22.9 1.2E+02 0.0026 21.4 3.4 29 140-168 2-30 (97)
53 cd07429 Cby_like Chibby, a nuc 21.7 47 0.001 25.0 1.0 14 170-183 52-65 (108)
54 cd02394 vigilin_like_KH K homo 21.5 2E+02 0.0043 18.2 4.0 20 138-158 42-61 (62)
55 cd06464 ACD_sHsps-like Alpha-c 21.3 69 0.0015 21.4 1.8 20 13-32 20-39 (88)
56 PRK10743 heat shock protein Ib 20.9 66 0.0014 24.9 1.7 18 13-30 58-75 (137)
57 PRK11597 heat shock chaperone 20.6 68 0.0015 25.1 1.7 18 13-30 56-73 (142)
58 PRK14940 DNA polymerase III su 20.4 6E+02 0.013 22.4 10.9 49 5-56 22-70 (367)
No 1
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=100.00 E-value=7e-65 Score=415.39 Aligned_cols=185 Identities=58% Similarity=0.919 Sum_probs=172.4
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccc--cEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhh
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHL--AIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNM 78 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~--~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~Nm 78 (189)
|+.++...||+||+||+|+++++.|+|+||+|+|+++|++. .+.+..++ +.+.+++|.++++.+|+|||+||||+||
T Consensus 1 ~~~~~~~~~I~IP~~V~V~i~~~~v~VkGp~G~L~~~~~~~~~~i~i~~~~-~~i~v~~~~~~~k~~a~~Gt~rslI~Nm 79 (190)
T PTZ00027 1 MKTIFSSEKIRIPEGVTVTVKSRKVTVTGKYGELTRSFRHLPVDIKLSKDG-KYIKVEMWFGTPSHLACIRTVCSHIKNM 79 (190)
T ss_pred CcccccCCCEecCCCCEEEEECCEEEEECCCceEEEEecCCCceEEEEeCC-CEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999973 45555577 8999999999999999999999999999
Q ss_pred eeeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecC-CCCEEEEEEccHhHHHHHHHH
Q psy7620 79 LKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAAL 157 (189)
Q Consensus 79 I~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~-~~t~i~i~G~DKq~Vgq~AA~ 157 (189)
|+||++||+++|+++|+|||+.++++.+|+.|.|+||||||||+.++||+|+++++++ .+|+|+|+|+|||+||||||+
T Consensus 80 I~GVt~Gf~~~LeivGvGyra~~~v~~~g~~L~l~N~LG~Sh~i~~~iP~gv~v~~~~~~~t~I~i~G~DKq~Vgq~AA~ 159 (190)
T PTZ00027 80 MTGVTKKFQYKMRLVYAHFPINSNITDNGKTIEIRNFLGEKRVRTVKMLPGVVVEKSESVKDEIIVTGADLELVSRSAAL 159 (190)
T ss_pred hhhhcCCEEEEEEEEEeeeeEEEEEcCCCCEEEEEccCCCceeEEEECCCCeEEEeCCCCCCEEEEEeCCHHHHHHHHHH
Confidence 9999999999999999999988666668999999999999999999999999999983 248999999999999999999
Q ss_pred HhhhccccCcceeeeeCcEEEeeeeeeee
Q psy7620 158 IQQSTTVKNKDIRKFLDGLYVSEKTTVVT 186 (189)
Q Consensus 158 Ir~~~~yKgKgir~f~dgiyv~~K~~~~~ 186 (189)
||+.|..|+||+|+|+||||+++|++..+
T Consensus 160 I~~~~~~~~~d~r~f~dgiy~~~k~~~~~ 188 (190)
T PTZ00027 160 IHQSTLVRNKDIRKFLDGIYVSEKGTVDK 188 (190)
T ss_pred HHHHhcccCCCccEeecCEEEEEeeeecc
Confidence 99999999999999999999999996544
No 2
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=100.00 E-value=1.2e-64 Score=410.87 Aligned_cols=178 Identities=42% Similarity=0.648 Sum_probs=168.3
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|-+++.++||+||++|+|+++++.++|+||+|+|+++|++..+++..++ +.+.+++|+++++++|+|||+||||+|||+
T Consensus 1 ~~~~~~~~pI~IP~~V~v~i~~~~v~VkGp~G~L~~~~~~~~v~i~~~~-~~i~v~~~~~~kk~ra~~gt~rslI~NmI~ 79 (180)
T PRK05518 1 MVAAYIREEIEIPEGVTVEIEGLVVTVKGPKGELTRDFWYPGVTISVED-GKVVIETEFARKKTKAMVGTFASHIKNMIK 79 (180)
T ss_pred CccccccccEEcCCCCEEEEECCEEEEECCCeEEEEEecCCcEEEEEEC-CEEEEEECCCCHHHHHHHHHHHHHHHhhhe
Confidence 6678999999999999999999999999999999999987578887788 899999999999999999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
|||+||+++|+++|+|||+++.+ +|+.|.|+|+||||||+.++||+||+++++ + |+|+|+|+|||+||||||+||+
T Consensus 80 GVt~Gf~~~LelvGvGypira~~--~g~~l~l~n~LG~Sh~v~~~iP~gV~v~~~-~-t~I~i~GiDKq~Vgq~AA~Ir~ 155 (180)
T PRK05518 80 GVTEGFEYKLKIVYSHFPMQVKV--QGNEVVIENFLGEKSPRRAKILGGVKVKVK-G-EDVIVEGIDKEDVGQTAANIEQ 155 (180)
T ss_pred ecccceEEEEEEEecCccEEEEE--cCCEEEEEeccccceeEEEeCCCCeEEEec-C-CEEEEEeCCHHHHHHHHHHHHH
Confidence 99999999999999999877544 578899999999999999999999999997 5 9999999999999999999999
Q ss_pred hccccCcceeeeeCcEEEeeeee
Q psy7620 161 STTVKNKDIRKFLDGLYVSEKTT 183 (189)
Q Consensus 161 ~~~yKgKgir~f~dgiyv~~K~~ 183 (189)
.|..|+||+|+|+|||||+||+.
T Consensus 156 ~~~~~~kd~r~f~dgiyv~~k~~ 178 (180)
T PRK05518 156 ATKIKGFDRRVFQDGIYIVEKEV 178 (180)
T ss_pred hhcccCCCCCEeecCEEEEEecc
Confidence 99999999999999999999974
No 3
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=100.00 E-value=1.2e-63 Score=407.80 Aligned_cols=179 Identities=52% Similarity=0.825 Sum_probs=165.8
Q ss_pred eeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccc--cEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheee
Q psy7620 4 IVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHL--AIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKG 81 (189)
Q Consensus 4 i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~--~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~G 81 (189)
++..+||+||+||+|+++++.|+|+||+|+|+++|++. .+.+..++ +.|.+++|+++++.+|+|||+||||+|||+|
T Consensus 3 ~~~~~pI~IP~~V~V~i~~~~ItVkGpkG~Ls~~~~~~~~~i~i~~~~-~~I~v~~~~~~kk~~al~Gt~rslI~NMI~G 81 (189)
T PTZ00179 3 IKSQDTITIPEDVTVSVKDRIVTVKGKRGTLTKDLRHLQLDFRVNKKN-RTFTAVRWFGSKIPNSTINTALSHVRNMITG 81 (189)
T ss_pred ccccccEeCCCCCEEEEeCCEEEEECCCcEEEEEcCCCCcEEEEEecC-CEEEEEeCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 45667999999999999999999999999999999984 46665566 7999999999999999999999999999999
Q ss_pred eccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCC----CEEEEEEccHhHHHHHHHH
Q psy7620 82 VTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQK----DELIIEGNDIENVSRSAAL 157 (189)
Q Consensus 82 Vt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~----t~i~i~G~DKq~Vgq~AA~ 157 (189)
||+||+++|+++|+||||++.+ +|+.|.|+||||||||+.++||+|++++++ +| |+|+|+|+|||+||||||+
T Consensus 82 Vt~GF~k~L~ivgvgyp~ra~v--~g~~l~l~N~LG~sh~~~~~ip~gv~v~~~-~~~~~k~~i~i~G~DKq~Vgq~AA~ 158 (189)
T PTZ00179 82 VTKGFRFKVRFAYAHFPISVSV--ENQLVEIRNFLGEKRVRRQVVADTVKVYRT-DPSKVKDELVLEGNDLEQVSREAAV 158 (189)
T ss_pred hcCCEEEEEEEEEeCcceEEEE--cCCEEEEEecCCCCccEEEECCCCEEEEec-CCcccCCEEEEEeCCHHHHHHHHHH
Confidence 9999999999999999887654 588899999999999999999999999997 45 8999999999999999999
Q ss_pred HhhhccccCcceeeeeCcEEEeeeeeeee
Q psy7620 158 IQQSTTVKNKDIRKFLDGLYVSEKTTVVT 186 (189)
Q Consensus 158 Ir~~~~yKgKgir~f~dgiyv~~K~~~~~ 186 (189)
|++.|..|+||+|+|+||||+++|++.+.
T Consensus 159 i~~~~~~~~~d~r~f~dgiy~~~k~~~~~ 187 (189)
T PTZ00179 159 MHQLCLVKKKDIRKFLDGIYVQTKTNVEA 187 (189)
T ss_pred HHHhhcccCCCccEeecCEEEEEeecccc
Confidence 99999999999999999999999996543
No 4
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=100.00 E-value=1.5e-62 Score=395.51 Aligned_cols=169 Identities=43% Similarity=0.702 Sum_probs=158.9
Q ss_pred eeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEc-ccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeeccc
Q psy7620 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDF-KHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKG 85 (189)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l-~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~G 85 (189)
++||.||++|+|+++++.|+|+||+|+|+++| ++ .+++..++ +.+.+++|+++++++|+|||+||||+|||+|||+|
T Consensus 1 ~~pI~IP~~V~v~i~~~~i~vkGp~G~L~~~~~~~-~v~i~~~~-~~i~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~G 78 (170)
T TIGR03653 1 REEIEIPEGVSVTIEGNIVTVKGPKGEVTRELWYP-GIEISVED-GKVVIETDFARKKDKAMVGTYRSHIKNMIKGVTEG 78 (170)
T ss_pred CceEecCCCCEEEEeCCEEEEECCCeEEEEEEeCC-cEEEEEeC-CEEEEEeCCCCHHHHHHHHHHHHHHHhheeecccC
Confidence 47999999999999999999999999999999 55 77887787 89999999999999999999999999999999999
Q ss_pred eeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhhcccc
Q psy7620 86 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVK 165 (189)
Q Consensus 86 f~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~~~yK 165 (189)
|+++|+++|+|||+++.+ +|+.|.|+|+||||||+.++||+||+++++ + ++|+|+|+|||+||||||+||+.|+.|
T Consensus 79 f~~~LeivGvGy~~ra~~--~g~~L~l~n~LG~Sh~i~~~iP~gI~v~~~-~-~~I~i~G~DKq~Vgq~AA~Ir~~~~~~ 154 (170)
T TIGR03653 79 FEYKMKVVYSHFPMQVKV--EGNKVVIENFLGEKAPRRAKIPGGVKVKVK-G-EEVIVTGIDKEDVGQTAANIEQATRIK 154 (170)
T ss_pred eEEEEEEEeccccEEEEE--cCCeEEEeeccccceeEEEECCCCeEEEec-C-CEEEEEeCCHHHHHHHHHHHHHhhccc
Confidence 999999999999876544 578899999999999999999999999997 4 499999999999999999999999999
Q ss_pred CcceeeeeCcEEEeee
Q psy7620 166 NKDIRKFLDGLYVSEK 181 (189)
Q Consensus 166 gKgir~f~dgiyv~~K 181 (189)
+||+|+|+||||++||
T Consensus 155 ~~d~r~f~dgiy~~~~ 170 (170)
T TIGR03653 155 GRDPRVFQDGIYIVEK 170 (170)
T ss_pred CCCccEeecCEEEEeC
Confidence 9999999999999997
No 5
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-57 Score=362.39 Aligned_cols=172 Identities=32% Similarity=0.479 Sum_probs=152.4
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|.++ ++.||.+|+||+|+++++.++++||+|+|+++|++..|.+..++ +.+.+.+++. ++.+|||||+||||+||++
T Consensus 1 Msri-~k~~i~~P~gV~V~i~~~~v~vkGpkGeL~~~~~~~~v~v~~~~-~~~vv~~~~~-k~~~a~~Gt~rali~Nmv~ 77 (178)
T COG0097 1 MSRI-GKRPIVIPAGVTVSIEGQVVTVKGPKGELTREFHDNVVKVEVED-NILVVRPVDG-KRKRALHGTVRALINNMVK 77 (178)
T ss_pred CCce-eeccEecCCCeEEEEeccEEEEECCCcEEEEEecCcceEEEecC-CEEEEeeccc-chhHHHHHHHHHHHHHHhe
Confidence 4444 45688889999999999999999999999999998336887777 7788877766 6666999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
|||+||+|+|+++|+|||+.+ .|+.|.+ |||||||+.++||+|++++++ .+|+|+|+|+|||+||||||+||+
T Consensus 78 GVteGf~~kL~ivgvgyra~v----~g~~l~l--~LG~shp~~~~ip~gi~v~v~-~~t~I~v~GidKe~VGQ~AA~Ir~ 150 (178)
T COG0097 78 GVTEGFEKKLEIVGVGYRAQV----VGGNLEL--FLGYSHPVVIEIPEGITVEVP-GPTEIVVEGIDKELVGQVAANIRA 150 (178)
T ss_pred ecccceEEEEEEEEecceeEE----eccEEEE--eecccCCeEEECCCCeEEEec-CCCEEEEEcCCHHHHhHHHHHHHh
Confidence 999999999999999999775 2555555 699999999999999999998 579999999999999999999999
Q ss_pred h---ccccCcceeeeeCcEEEeeeeee
Q psy7620 161 S---TTVKNKDIRKFLDGLYVSEKTTV 184 (189)
Q Consensus 161 ~---~~yKgKgir~f~dgiyv~~K~~~ 184 (189)
+ +||||||+ |+||+|+.+|+-.
T Consensus 151 ~r~pepykgKgi--~ydge~I~~K~gK 175 (178)
T COG0097 151 ARKPEPYKGKGI--RYDGEYIRRKEGK 175 (178)
T ss_pred ccCCCCCCCcce--EEcCEEEEEeccc
Confidence 9 89999997 7899999999754
No 6
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=100.00 E-value=1.6e-55 Score=357.27 Aligned_cols=171 Identities=29% Similarity=0.399 Sum_probs=156.8
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|.+| +++||+||+||+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.+.+|+++++++|+|||+||||+|||+
T Consensus 1 msri-g~~~I~IP~~V~v~i~~~~v~vkGp~G~l~~~~~~-~v~i~~~~-~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~ 77 (178)
T CHL00140 1 MSRI-GKLPIKIPDNVNVSIDDQIIKVKGPKGTLSRKIPD-LITIEIQD-NSLFVSKKDESKKARALHGLYRTLINNMVI 77 (178)
T ss_pred CCcc-cceeeecCCCCEEEEECCEEEEECCCEEEEEECCC-CeEEEEeC-CEEEEEcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5444 55799999999999999999999999999999999 77887777 899999999999999999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
||++||+++|+++|+||++. .+|+.|.|+ ||||||+.++||+|++|+|+ ++|+|+|+|+|||+||||||+||+
T Consensus 78 GVt~Gf~~~L~lvGvGyr~~----~~g~~l~l~--LG~sh~i~~~IP~gv~v~~~-~~t~I~i~G~dke~Vgq~AA~Ir~ 150 (178)
T CHL00140 78 GVSEGFEKKLELQGVGYRAQ----VQGKDLILN--LGYSHPVKIKIPPGISVEVE-NNTNITIKGIDKELVGQFAAKIRS 150 (178)
T ss_pred hcccCceEEEEEEEEEEEEE----EeCCcEEEE--ecCCeeEEEECCCCeEEEeC-CCCEEEEEECCHHHHHHHHHHHhc
Confidence 99999999999999999854 347789995 99999999999999999997 579999999999999999999999
Q ss_pred h---ccccCcceeeeeCcEEEeeeee
Q psy7620 161 S---TTVKNKDIRKFLDGLYVSEKTT 183 (189)
Q Consensus 161 ~---~~yKgKgir~f~dgiyv~~K~~ 183 (189)
+ ||||||||| .+|+++..|.-
T Consensus 151 ~r~pepYKGKGI~--y~~e~i~~K~g 174 (178)
T CHL00140 151 VRPPEPYKGKGIR--YKGEVIRRKAG 174 (178)
T ss_pred cCCCCCcCCccEe--ECCEEEEEecc
Confidence 9 999999996 58888887753
No 7
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=100.00 E-value=5.8e-54 Score=347.34 Aligned_cols=167 Identities=26% Similarity=0.398 Sum_probs=153.7
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeecc
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 84 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 84 (189)
+++.||+||++|+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.++.|+++++++|+|||+||||+|||+||++
T Consensus 3 ig~~~I~IP~~V~v~~~~~~v~v~Gp~G~l~~~l~~-~i~i~~~~-~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~ 80 (175)
T TIGR03654 3 IGKKPIAIPAGVEVTIDGNVVTVKGPKGELSRTLHP-GVTVKVED-GQLTVSRPNDSKEARALHGTTRALINNMVIGVSE 80 (175)
T ss_pred ccccceecCCCcEEEEeCCEEEEEcCCeEEEEEcCC-CeEEEEEC-CEEEEEecCCCHHHHHHHHHHHHHHHHHhheecc
Confidence 578899999999999999999999999999999976 77787777 8999999999999999999999999999999999
Q ss_pred ceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh---
Q psy7620 85 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS--- 161 (189)
Q Consensus 85 Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~--- 161 (189)
||+++|+++|+||++. .+|+.|.|+ ||||||+.++||+|++++++ ++|+|+|+|+|||+||||||+||++
T Consensus 81 Gf~~~L~lvGvgyrv~----~~g~~l~l~--LG~sh~i~~~Ip~~v~v~~~-~~t~I~i~G~dke~Vgq~AA~Ir~~r~p 153 (175)
T TIGR03654 81 GFEKKLEIVGVGYRAQ----LQGKKLNLS--LGYSHPVEYEIPEGITVEVP-KPTEIVVKGIDKQLVGQVAAEIRAFRKP 153 (175)
T ss_pred CcEEEEEEEEEEEEEE----EeCCeEEEE--ecCceeEEEECCCCeEEEeC-CCCEEEEEECCHHHHHHHHHHHhccCCC
Confidence 9999999999999743 457889996 99999999999999999997 5789999999999999999999999
Q ss_pred ccccCcceeeeeCcEEEeeee
Q psy7620 162 TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 162 ~~yKgKgir~f~dgiyv~~K~ 182 (189)
||||||||| .+|+++..|.
T Consensus 154 epYKgkGi~--~~~e~I~~K~ 172 (175)
T TIGR03654 154 EPYKGKGIR--YAGEVVRRKE 172 (175)
T ss_pred CCcCCCcEe--ECCEEEEEeC
Confidence 999999996 4777776664
No 8
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=100.00 E-value=2.8e-53 Score=344.18 Aligned_cols=171 Identities=27% Similarity=0.405 Sum_probs=155.9
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|.+| ++.+|+||++|+|+++++.|+|+||+|+|+++|++ .+++..++ +.|.++.|.++++++|+|||+||||+|||+
T Consensus 1 ms~i-g~~~I~IP~~V~v~~~~~~v~vkGp~G~l~~~~~~-~v~i~~~~-~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~ 77 (178)
T PRK05498 1 MSRI-GKKPIAIPAGVEVTINGNVVTVKGPKGELSRTLNP-DVTVKVED-NEITVTRPDDSKKARALHGTTRALINNMVV 77 (178)
T ss_pred CCcc-cccceecCCCCEEEEECCEEEEECCCEEEEEEcCC-CeEEEEEC-CEEEEEcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5554 45699999999999999999999999999999976 77787777 899999999999999999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
||++||+++|+++|+||++. .+|+.|.|. ||||||+.++||+|++|+++ ++|+|+|+|+|||+||||||+||+
T Consensus 78 GVt~Gf~~~L~lvGvgyrv~----~~g~~l~l~--LG~sh~i~~~Ip~gv~v~~~-~~t~I~i~G~dke~Vg~~AA~Ir~ 150 (178)
T PRK05498 78 GVTEGFEKKLEIVGVGYRAQ----VKGKKLNLS--LGYSHPVEYEIPEGITVEVP-KPTEIVVKGIDKQLVGQVAAEIRS 150 (178)
T ss_pred hcCCCeEEEEEEEeEEEEEE----EeCCeEEEE--ecCCEEEEEECCCCeEEEeC-CCCEEEEEECCHHHHHHHHHHHhc
Confidence 99999999999999999754 357889995 99999999999999999997 568999999999999999999999
Q ss_pred h---ccccCcceeeeeCcEEEeeeee
Q psy7620 161 S---TTVKNKDIRKFLDGLYVSEKTT 183 (189)
Q Consensus 161 ~---~~yKgKgir~f~dgiyv~~K~~ 183 (189)
+ ||||||||| .+|+++..|.-
T Consensus 151 ~r~pe~YkgkGi~--~~~e~i~~K~g 174 (178)
T PRK05498 151 YRPPEPYKGKGIR--YAGEVVRRKEG 174 (178)
T ss_pred cCCCCCccCCcEe--ECCEEEEEecc
Confidence 9 999999995 68888887753
No 9
>KOG3254|consensus
Probab=100.00 E-value=4.8e-45 Score=292.00 Aligned_cols=168 Identities=24% Similarity=0.299 Sum_probs=143.7
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEE--EecccEEEEEeccCchhhhhHHHhHHHHHhhheeee
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIH--MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGV 82 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~--~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GV 82 (189)
+++..|..|++-.-+++++.++|+||+|+|.+++|. .++++ .+..+........+.|++++||||+|||++||+.||
T Consensus 34 ~~~k~i~~~e~k~~~lege~l~vkGP~gel~l~~P~-~l~L~~dkk~~g~~~~~k~~etkkqr~mwgt~R~l~~N~v~GV 112 (211)
T KOG3254|consen 34 VGKKEIIVKENKQRDLEGEQLQVKGPHGELNLRFPN-YLNLSNDKKKSGMDANIKKQETKKQRAMWGTFRALLANNVKGV 112 (211)
T ss_pred ecceeEEeehhhccccccCceEeeCCcceeeccCCc-cccccchhhhcceeeeecchhhHHHHHHHHHHHHHHhccchhh
Confidence 466788888888888899999999999999999998 44443 222133333445678999999999999999999999
Q ss_pred ccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh-
Q psy7620 83 TKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS- 161 (189)
Q Consensus 83 t~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~- 161 (189)
|.||.+.|++||+|||++ .+|+.|+++ |||||++.+.||+++.|+++ .||.++++|+|||+|+||||.+|+|
T Consensus 113 t~g~~k~l~lVGvGYRa~----legk~l~lk--lG~S~~v~l~iP~~v~Vk~p-~ptsl~~~G~dKq~V~qFAAkvRsfk 185 (211)
T KOG3254|consen 113 TMGFLKILKLVGVGYRAS----LEGKFLHLK--LGYSHDVLLSIPTDVQVKNP-TPTSLVLRGIDKQKVTQFAAKVRSFK 185 (211)
T ss_pred hhhhhheeeEEeeeeEEE----ecCceEEEE--eccccceeecCCCceEEecC-CCCEEEEecccHHHHHHHHHHHhccC
Confidence 999999999999999854 459999999 99999999999999999998 5899999999999999999999999
Q ss_pred --ccccCcceeeeeCcEEEeeee
Q psy7620 162 --TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 162 --~~yKgKgir~f~dgiyv~~K~ 182 (189)
||||||||- .|++-+..|.
T Consensus 186 pPEPYKGKGIy--v~dE~vklK~ 206 (211)
T KOG3254|consen 186 PPEPYKGKGIY--VDDEKVKLKA 206 (211)
T ss_pred CCCCcCCCceE--eccceeeecc
Confidence 999999994 4666655543
No 10
>KOG3255|consensus
Probab=99.94 E-value=2.8e-28 Score=197.03 Aligned_cols=176 Identities=61% Similarity=0.958 Sum_probs=161.7
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecc--cEEEEEeccCchhhhhHHHhHHHHHhhh
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNK--RVLKVEKWFGTKKEIAAVRTVCSHISNM 78 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~--~~l~v~~~~~~k~~~a~~gt~rsli~Nm 78 (189)
|+.|+.++.+.||++|.+++++..++++||+|+|.++|.|+++++....+ +.+.+..|...|+..|..-|..|+++||
T Consensus 1 mk~Ilsn~tv~iPe~v~it~k~~v~~v~gprgtl~~d~~hi~~~~~~~~~~~~~ik~~~~~~~Rk~va~l~t~~s~ien~ 80 (179)
T KOG3255|consen 1 MKTILSNQTVHIPENVDITLKGHVVIVKGPRGTLWRDFNHINVELSLLGKKKKRLKIDKWWGTRKGVACLRTVVSHIENC 80 (179)
T ss_pred CceEEeceEEecCCCceEEEeeEEEEEeCCCcceeccccccchhhhhhcchhhhhhhhhhhccchhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998777764442 2488888999999999999999999999
Q ss_pred eeeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEec-CCCCEEEEEEccHhHHHHHHHH
Q psy7620 79 LKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAAL 157 (189)
Q Consensus 79 I~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~-~~~t~i~i~G~DKq~Vgq~AA~ 157 (189)
++||+.||.+++..++.||+++.....++...++.||||.+.+..+++++|+..... ..++++.++|+|-+.|+|.||.
T Consensus 81 i~gvt~~~i~k~~av~a~f~in~~~~~~~~s~~i~n~l~~k~~~~~~~~~Gv~~~~~~~~~~~i~~~~~~~~~vs~~~a~ 160 (179)
T KOG3255|consen 81 IKGVTIGFIYKMRAVYAHFPINTVIQENGKSEEIRNFLGEKLVRRVEMRPGVTIVRSSKVKDEIVLEGNDLELVSQSAAL 160 (179)
T ss_pred HhcchHHHHHHhhhHHhhccccceecCCCcchhhhhhhhhhccceEecCCCeEEeeehhcchhheecccchhhhhhHhHh
Confidence 999999999999999999999998888888899999999999999999999998886 5678999999999999999888
Q ss_pred HhhhccccCcceeeeeCcEEEeeeeee
Q psy7620 158 IQQSTTVKNKDIRKFLDGLYVSEKTTV 184 (189)
Q Consensus 158 Ir~~~~yKgKgir~f~dgiyv~~K~~~ 184 (189)
++.|..+++ +| ||+||+++
T Consensus 161 -~~~~~~~~~-----ld--yv~~k~~~ 179 (179)
T KOG3255|consen 161 -QQICTVKNK-----LD--YVSEKGTI 179 (179)
T ss_pred -hccceehhh-----cc--hhhhcccC
Confidence 888888866 78 99999864
No 11
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=99.79 E-value=2.6e-19 Score=125.66 Aligned_cols=72 Identities=38% Similarity=0.622 Sum_probs=66.2
Q ss_pred eCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEE--EecccEEEEEeccCchhhhh---HHHhHHHHHhhheeeeccc
Q psy7620 12 IPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIH--MVNKRVLKVEKWFGTKKEIA---AVRTVCSHISNMLKGVTKG 85 (189)
Q Consensus 12 IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~--~~~~~~l~v~~~~~~k~~~a---~~gt~rsli~NmI~GVt~G 85 (189)
||+||+|+++++.++++||+|+|++++|+ .+.+. .++ +.+.+..+.+++++++ +|||+|||++||++||++|
T Consensus 1 IP~gV~v~~~~~~i~v~G~~g~l~~~~~~-~v~v~~~~~~-~~~~~~~~~~~~k~~~~~a~~gt~rsli~n~i~GV~~G 77 (77)
T PF00347_consen 1 IPEGVKVTIKGNIITVKGPKGELSRPIPP-GVKVEIKVED-NKITVSVLSGNKKQKAFAAMIGTYRSLINNMIKGVTEG 77 (77)
T ss_dssp SSTTCEEEEETTEEEEESSSSEEEEEETT-TEEEEEEEET-TSEEEEEEEESHHHHHHHHHHHHHHHHHHHHHHHHHTE
T ss_pred CCCcEEEEEeCcEEEEECCCEeEEEECCC-CeeEEEEcCC-CceEEEECcccHhHhhhHHhhccccccccCceeEECCC
Confidence 79999999999999999999999999999 45554 667 8899999999999999 9999999999999999987
No 12
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=98.02 E-value=5.1e-06 Score=57.83 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=50.7
Q ss_pred eEEEccCCcEEEEecccCceeEEEEeCCCCeEEEec---CCCCEEEEEEccHhHHHHHHHHHhhh---ccccCccee
Q psy7620 100 NCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS---KQKDELIIEGNDIENVSRSAALIQQS---TTVKNKDIR 170 (189)
Q Consensus 100 ~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~---~~~t~i~i~G~DKq~Vgq~AA~Ir~~---~~yKgKgir 170 (189)
++++..+++.+.+ .|++|...+++|+++++++. .+.+....++.|+++. +||.++.+ ..|..+|+.
T Consensus 4 gV~v~~~~~~i~v---~G~~g~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~k~~~--~~a~~gt~rsli~n~i~GV~ 75 (77)
T PF00347_consen 4 GVKVTIKGNIITV---KGPKGELSRPIPPGVKVEIKVEDNKITVSVLSGNKKQKA--FAAMIGTYRSLINNMIKGVT 75 (77)
T ss_dssp TCEEEEETTEEEE---ESSSSEEEEEETTTEEEEEEEETTSEEEEEEEESHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCcEEEE---ECCCEeEEEECCCCeeEEEEcCCCceEEEECcccHhHhh--hHHhhccccccccCceeEEC
Confidence 3445556766666 89999999999999999953 2234567899999998 99998877 677777753
No 13
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=72.74 E-value=11 Score=26.65 Aligned_cols=43 Identities=9% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCCeEEEEeCCEEEEEeCC--------eEEEEEcc--c-c---cEEEEE-ecccEEEEE
Q psy7620 13 PRGLQCFVKARTVTVKGPR--------GTLKRDFK--H-L---AIDIHM-VNKRVLKVE 56 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~--------G~l~~~l~--~-~---~i~~~~-~~~~~l~v~ 56 (189)
|+.++|++.++.|+|+|-+ |+.++.+. . + .++... ++ +.|.|+
T Consensus 21 pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~-GvL~I~ 78 (81)
T cd06479 21 PEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGED-GTLTIK 78 (81)
T ss_pred HHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCC-CEEEEE
Confidence 6899999999999999965 66666544 2 1 244444 45 667665
No 14
>PF12970 DUF3858: Domain of Unknown Function with PDB structure (DUF3858); InterPro: IPR024544 This domain of unknown function is structurally similar to part of neuropilin-2. The proteins it occurs in have not yet been functionally characterised.; PDB: 3KD4_A.
Probab=71.81 E-value=15 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.407 Sum_probs=23.3
Q ss_pred eeeEeCCCeEEEEeCCEEEEEeCCeEEEEEccc
Q psy7620 8 QTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKH 40 (189)
Q Consensus 8 ~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~ 40 (189)
..|.+|+|-++.-....-.++.|-|++++.+..
T Consensus 41 yti~~pegm~l~t~~~~K~I~N~~Gk~~isv~~ 73 (116)
T PF12970_consen 41 YTIELPEGMKLVTPPMEKKIDNPVGKVSISVKP 73 (116)
T ss_dssp EEEEE-TT-EE-S--S-EEEEETTEEEEEEEEE
T ss_pred EEEEcCCCCeeecCccceeccCCcceEEEEEEe
Confidence 468899999988877888999999999988775
No 15
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=71.19 E-value=11 Score=26.73 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=17.1
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.|+|+|.+
T Consensus 23 ~edi~V~v~~~~L~I~g~~ 41 (86)
T cd06497 23 PEDLTVKVLDDYVEIHGKH 41 (86)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 6899999999999999965
No 16
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=67.28 E-value=49 Score=26.74 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=50.8
Q ss_pred eeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEcc--Hh---HHHHHHHHHhhh-----------
Q psy7620 98 PINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGND--IE---NVSRSAALIQQS----------- 161 (189)
Q Consensus 98 ~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~D--Kq---~Vgq~AA~Ir~~----------- 161 (189)
|-++.++.+++.|.+++-+| -....+|..+.+... ++.|.++-.+ ++ ..|.++|.|++.
T Consensus 12 P~~V~v~i~~~~v~vkGp~G---~l~~~~~~~v~i~~~--~~~i~v~~~~~~k~~~a~~gt~~slI~Nmi~GVt~Gf~~~ 86 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKG---TLSRKIPDLITIEIQ--DNSLFVSKKDESKKARALHGLYRTLINNMVIGVSEGFEKK 86 (178)
T ss_pred CCCCEEEEECCEEEEECCCE---EEEEECCCCeEEEEe--CCEEEEEcCCCCHHHHHHHHHHHHHHHHHHhhcccCceEE
Confidence 34445666788899975555 667889999998884 3678887443 32 479999999885
Q ss_pred ccccCcceeeeeCcE
Q psy7620 162 TTVKNKDIRKFLDGL 176 (189)
Q Consensus 162 ~~yKgKgir~f~dgi 176 (189)
-...|-|.|.-++|-
T Consensus 87 L~lvGvGyr~~~~g~ 101 (178)
T CHL00140 87 LELQGVGYRAQVQGK 101 (178)
T ss_pred EEEEEEEEEEEEeCC
Confidence 134566677655553
No 17
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=63.18 E-value=53 Score=26.47 Aligned_cols=73 Identities=16% Similarity=0.211 Sum_probs=48.7
Q ss_pred eEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEcc--H---hHHHHHHHHHhhh-----------cc
Q psy7620 100 NCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGND--I---ENVSRSAALIQQS-----------TT 163 (189)
Q Consensus 100 ~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~D--K---q~Vgq~AA~Ir~~-----------~~ 163 (189)
.+.+..+++.|.+++-+| -....+|+++.+... ++.|.++-.+ + ...|-++|.|++. -.
T Consensus 13 ~V~v~~~~~~v~v~Gp~G---~l~~~l~~~i~i~~~--~~~i~v~~~~~~kk~~a~~gt~~s~i~Nmi~GVt~Gf~~~L~ 87 (175)
T TIGR03654 13 GVEVTIDGNVVTVKGPKG---ELSRTLHPGVTVKVE--DGQLTVSRPNDSKEARALHGTTRALINNMVIGVSEGFEKKLE 87 (175)
T ss_pred CcEEEEeCCEEEEEcCCe---EEEEEcCCCeEEEEE--CCEEEEEecCCCHHHHHHHHHHHHHHHHHhheeccCcEEEEE
Confidence 334555678899987777 455666899999884 4678887544 2 3678888888874 13
Q ss_pred ccCcceeeeeCcEE
Q psy7620 164 VKNKDIRKFLDGLY 177 (189)
Q Consensus 164 yKgKgir~f~dgiy 177 (189)
.-|-|-|+-++|-+
T Consensus 88 lvGvgyrv~~~g~~ 101 (175)
T TIGR03654 88 IVGVGYRAQLQGKK 101 (175)
T ss_pred EEEEEEEEEEeCCe
Confidence 34666666666543
No 18
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=61.73 E-value=27 Score=24.71 Aligned_cols=45 Identities=16% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCEEEEEeCCe------------------EEEEEccc-c---cEEEEEecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPRG------------------TLKRDFKH-L---AIDIHMVNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G------------------~l~~~l~~-~---~i~~~~~~~~~l~v~~~ 58 (189)
|++++|+++++.|+++|.+. .-++.||. + .++...++ +.|.|..+
T Consensus 20 ~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~-GvL~I~~p 86 (102)
T PF00011_consen 20 KEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN-GVLTITIP 86 (102)
T ss_dssp GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT-SEEEEEEE
T ss_pred hHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC-CEEEEEEE
Confidence 57999999999999999887 23344543 1 35556666 78887654
No 19
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=61.29 E-value=26 Score=22.37 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=17.1
Q ss_pred CCCeEEEEeCCEEEEEeCCe
Q psy7620 13 PRGLQCFVKARTVTVKGPRG 32 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G 32 (189)
|+.+.|.++++.+.|+|...
T Consensus 19 ~~~i~v~~~~~~l~v~~~~~ 38 (80)
T cd00298 19 KEDIKVEVEDNVLTISGKRE 38 (80)
T ss_pred HHHeEEEEECCEEEEEEEEc
Confidence 47899999999999998754
No 20
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=57.98 E-value=33 Score=24.25 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=17.1
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.|+|+|.+
T Consensus 20 ~edI~V~v~~~~L~I~g~~ 38 (87)
T cd06481 20 PEDLSVRVDGRKLVVTGKR 38 (87)
T ss_pred hHHeEEEEECCEEEEEEEE
Confidence 7899999999999999964
No 21
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=56.68 E-value=90 Score=25.15 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=47.9
Q ss_pred eEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEE--ccHh---HHHHHHHHHhhh-----------cc
Q psy7620 100 NCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG--NDIE---NVSRSAALIQQS-----------TT 163 (189)
Q Consensus 100 ~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G--~DKq---~Vgq~AA~Ir~~-----------~~ 163 (189)
++.+..+++.|.+++-+| -....+|.++.+... ++.|.++- .++. .+|-++|.|++. -.
T Consensus 14 ~V~v~~~~~~v~vkGp~G---~l~~~~~~~v~i~~~--~~~i~v~~~~~~k~~~a~~gt~~s~I~Nmi~GVt~Gf~~~L~ 88 (178)
T PRK05498 14 GVEVTINGNVVTVKGPKG---ELSRTLNPDVTVKVE--DNEITVTRPDDSKKARALHGTTRALINNMVVGVTEGFEKKLE 88 (178)
T ss_pred CCEEEEECCEEEEECCCE---EEEEEcCCCeEEEEE--CCEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhcCCCeEEEEE
Confidence 344555678899987777 344566889999884 46788873 3344 678888888885 13
Q ss_pred ccCcceeeeeCcEE
Q psy7620 164 VKNKDIRKFLDGLY 177 (189)
Q Consensus 164 yKgKgir~f~dgiy 177 (189)
..|-|-|+.++|-+
T Consensus 89 lvGvgyrv~~~g~~ 102 (178)
T PRK05498 89 IVGVGYRAQVKGKK 102 (178)
T ss_pred EEeEEEEEEEeCCe
Confidence 34566666665543
No 22
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=53.48 E-value=54 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCEEEEEeCCeEEEEEccc-cc---EEEEEecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPRGTLKRDFKH-LA---IDIHMVNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G~l~~~l~~-~~---i~~~~~~~~~l~v~~~ 58 (189)
|++++|+++++.+++.|+.=.+..+|++ +. .+....+ +.|.+...
T Consensus 19 ~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~-~~l~i~L~ 67 (78)
T cd06469 19 TSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGN-GVLVFTLV 67 (78)
T ss_pred cccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeC-CEEEEEEE
Confidence 6789999999999999966566777776 22 2233445 66666543
No 23
>COG0097 RplF Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]
Probab=52.92 E-value=16 Score=29.89 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=19.2
Q ss_pred eeeEeCCCeEEEEeC-CEEEEEeCCe
Q psy7620 8 QTVKIPRGLQCFVKA-RTVTVKGPRG 32 (189)
Q Consensus 8 ~~I~IP~~V~v~i~~-~~v~v~Gp~G 32 (189)
..++||+|+++++.+ ..|+++|+.=
T Consensus 113 ~~~~ip~gi~v~v~~~t~I~v~GidK 138 (178)
T COG0097 113 VVIEIPEGITVEVPGPTEIVVEGIDK 138 (178)
T ss_pred eEEECCCCeEEEecCCCEEEEEcCCH
Confidence 356788998888877 6688888653
No 24
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=52.50 E-value=38 Score=22.26 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=22.8
Q ss_pred CCeEEEecCCCCEEEEEEccHhHHHHHHHHH
Q psy7620 128 PGVKVSNSKQKDELIIEGNDIENVSRSAALI 158 (189)
Q Consensus 128 ~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~I 158 (189)
.|+++.++ +...+.|+|.|++.+-...+.|
T Consensus 31 tg~~I~i~-~~g~v~I~G~~~~~v~~A~~~I 60 (61)
T cd02393 31 TGVKIDIE-DDGTVYIAASDKEAAEKAKKMI 60 (61)
T ss_pred HCCEEEeC-CCCEEEEEeCCHHHHHHHHHHh
Confidence 46777776 3478999999999888766655
No 25
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=50.67 E-value=1.3e+02 Score=24.22 Aligned_cols=58 Identities=14% Similarity=0.215 Sum_probs=41.0
Q ss_pred eeEEEccCCcEEEEecccCceeEEEEeC-CCCeEEEecCCCCEEEEEEcc--H---hHHHHHHHHHhhh
Q psy7620 99 INCVTSENNTLLEIRNFLGEKYIRRVKM-APGVKVSNSKQKDELIIEGND--I---ENVSRSAALIQQS 161 (189)
Q Consensus 99 ~~~~~~~~g~~L~lkn~LG~Sh~i~~~I-P~gi~v~~~~~~t~i~i~G~D--K---q~Vgq~AA~Ir~~ 161 (189)
-.+.+..+++.+.+++-+| ....++ |+.+++... ++.|.++-.+ + ...|.+.|.|++.
T Consensus 8 ~~V~v~i~~~~i~vkGp~G---~L~~~~~~~~v~i~~~--~~~i~v~~~~~~k~~~a~~gt~rsli~Nm 71 (170)
T TIGR03653 8 EGVSVTIEGNIVTVKGPKG---EVTRELWYPGIEISVE--DGKVVIETDFARKKDKAMVGTYRSHIKNM 71 (170)
T ss_pred CCCEEEEeCCEEEEECCCe---EEEEEEeCCcEEEEEe--CCEEEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 3444556678899986666 455777 889999884 4678888554 3 3567788888774
No 26
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=49.81 E-value=21 Score=29.12 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=12.3
Q ss_pred eeEeCCCeEEEEeCCEEEEEeC
Q psy7620 9 TVKIPRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~v~Gp 30 (189)
.++||+||+++..+..|+++|.
T Consensus 120 ~~~iP~gV~v~~~~t~I~i~Gi 141 (180)
T PRK05518 120 RAKILGGVKVKVKGEDVIVEGI 141 (180)
T ss_pred EEeCCCCeEEEecCCEEEEEeC
Confidence 4566677766554434555553
No 27
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=49.75 E-value=48 Score=23.31 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.1
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|++++|++.++.|+|+|.
T Consensus 24 kedi~v~~~~~~L~I~g~ 41 (90)
T cd06470 24 EDDLEIEVENNQLTVTGK 41 (90)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 478999999999999986
No 28
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=48.14 E-value=46 Score=25.62 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCEEEEEeCC------------------eEEEEE--ccc-cc---EEEEEecccEEEEEecc
Q psy7620 13 PRGLQCFVKARTVTVKGPR------------------GTLKRD--FKH-LA---IDIHMVNKRVLKVEKWF 59 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~------------------G~l~~~--l~~-~~---i~~~~~~~~~l~v~~~~ 59 (189)
|+.++|++.++.++|+|.. |+..+. ||. +. +....++ +-|.|+...
T Consensus 63 kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n-GvL~I~lpk 132 (146)
T COG0071 63 KEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN-GLLTVTLPK 132 (146)
T ss_pred hHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC-cEEEEEEec
Confidence 5789999999999999987 444443 443 32 4445556 778776543
No 29
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=42.52 E-value=18 Score=25.62 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=14.8
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.|+|+|.+
T Consensus 20 ~edI~V~v~~~~L~I~ge~ 38 (83)
T cd06477 20 PEDIIIQVFEGWLLIKGQH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5778888888888888853
No 30
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=41.66 E-value=96 Score=21.58 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=16.3
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.++|+|.+
T Consensus 23 ~edi~v~~~~~~L~I~g~~ 41 (93)
T cd06471 23 KEDIKLDYKDGYLTISAKR 41 (93)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 3789999999999998854
No 31
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=40.20 E-value=24 Score=24.64 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=14.8
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|+.++|++.++.++|+|.
T Consensus 20 ~edI~V~v~~~~L~I~g~ 37 (83)
T cd06478 20 PEELSVKVLGDFVEIHGK 37 (83)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 578888888888888884
No 32
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=40.05 E-value=20 Score=25.22 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=15.1
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.|+|+|.+
T Consensus 20 ~edi~V~v~~~~L~I~g~~ 38 (83)
T cd06476 20 PDEITVRTVDNLLEVSARH 38 (83)
T ss_pred HHHeEEEEECCEEEEEEEE
Confidence 5788888888888888854
No 33
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=39.69 E-value=21 Score=25.13 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|+.++|++.++.++++|.
T Consensus 20 ~edi~V~v~~~~L~I~g~ 37 (84)
T cd06498 20 PEELKVKVLGDFIEIHGK 37 (84)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 678899999999999984
No 34
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=38.51 E-value=22 Score=25.78 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|++.++.|+|+|..
T Consensus 28 pEDL~Vkv~~~~L~V~Gkh 46 (91)
T cd06480 28 PEELTVKTKDGFVEVSGKH 46 (91)
T ss_pred HHHcEEEEECCEEEEEEEE
Confidence 7788888888888888754
No 35
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=38.01 E-value=1.3e+02 Score=20.89 Aligned_cols=19 Identities=21% Similarity=0.420 Sum_probs=15.6
Q ss_pred CCCeEEEEeC-CEEEEEeCC
Q psy7620 13 PRGLQCFVKA-RTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~-~~v~v~Gp~ 31 (189)
|+.++|++.+ +.++|+|.+
T Consensus 22 ~edi~i~v~~~~~L~I~g~~ 41 (92)
T cd06472 22 KEDVKVEVEDGRVLRISGER 41 (92)
T ss_pred hHhEEEEEeCCCEEEEEEEe
Confidence 5899999986 589999953
No 36
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=36.93 E-value=2e+02 Score=23.62 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=39.2
Q ss_pred eeeEEEccCCcEEEEecccCceeEEEEeCCC---CeEEEecCCCCEEEEEEcc-----HhHHHHHHHHHhhh
Q psy7620 98 PINCVTSENNTLLEIRNFLGEKYIRRVKMAP---GVKVSNSKQKDELIIEGND-----IENVSRSAALIQQS 161 (189)
Q Consensus 98 ~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~---gi~v~~~~~~t~i~i~G~D-----Kq~Vgq~AA~Ir~~ 161 (189)
|-.+.+..+++.+.+++-+|. ...++|. ++.+... ++.|.++-.+ +...|.++|.|++-
T Consensus 13 P~~V~V~i~~~~v~VkGp~G~---L~~~~~~~~~~i~i~~~--~~~i~v~~~~~~~k~~a~~Gt~rslI~Nm 79 (190)
T PTZ00027 13 PEGVTVTVKSRKVTVTGKYGE---LTRSFRHLPVDIKLSKD--GKYIKVEMWFGTPSHLACIRTVCSHIKNM 79 (190)
T ss_pred CCCCEEEEECCEEEEECCCce---EEEEecCCCceEEEEeC--CCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 334456666888999877773 3345544 7777664 4678887444 23678888888875
No 37
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=33.50 E-value=30 Score=24.74 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=12.5
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|+.++|++.++.|+|+|.
T Consensus 21 kedI~V~v~~~~L~I~ge 38 (87)
T cd06482 21 PDQVKVKVKDGKVQVSAE 38 (87)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 456777777777777774
No 38
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=33.47 E-value=29 Score=23.93 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.5
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|+++++.|+|+|.+
T Consensus 20 ~edI~v~v~~~~L~I~g~~ 38 (83)
T cd06526 20 PEELKVKVSDNKLVVEGKH 38 (83)
T ss_pred HHHcEEEEECCEEEEEEEE
Confidence 5788888888888888864
No 39
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=33.31 E-value=2.6e+02 Score=22.91 Aligned_cols=59 Identities=7% Similarity=0.129 Sum_probs=40.1
Q ss_pred eeeEEEccCCcEEEEecccCceeEEEEeCCC---CeEEEecCCCCEEEEEEcc--H---hHHHHHHHHHhhh
Q psy7620 98 PINCVTSENNTLLEIRNFLGEKYIRRVKMAP---GVKVSNSKQKDELIIEGND--I---ENVSRSAALIQQS 161 (189)
Q Consensus 98 ~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~---gi~v~~~~~~t~i~i~G~D--K---q~Vgq~AA~Ir~~ 161 (189)
|-++.+..+++.|.+++-+| .....+|+ ++.+... +++|.++-.+ + ...|.++|.|++.
T Consensus 12 P~~V~V~i~~~~ItVkGpkG---~Ls~~~~~~~~~i~i~~~--~~~I~v~~~~~~kk~~al~Gt~rslI~NM 78 (189)
T PTZ00179 12 PEDVTVSVKDRIVTVKGKRG---TLTKDLRHLQLDFRVNKK--NRTFTAVRWFGSKIPNSTINTALSHVRNM 78 (189)
T ss_pred CCCCEEEEeCCEEEEECCCc---EEEEEcCCCCcEEEEEec--CCEEEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 34445666688899986666 45567776 6777663 4688888543 2 3668888888875
No 40
>PF05137 PilN: Fimbrial assembly protein (PilN); InterPro: IPR007813 PilN is a plasmid-encoded, lipoprotein which locates to the outer membrane of bacteria and are part of a thin pilus required only for liquid mating [].
Probab=32.33 E-value=1.1e+02 Score=20.27 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=30.5
Q ss_pred eCCCCeEEEec-CCCCEEEEEEc--cHhHHHHHHHHHhhhcccc
Q psy7620 125 KMAPGVKVSNS-KQKDELIIEGN--DIENVSRSAALIQQSTTVK 165 (189)
Q Consensus 125 ~IP~gi~v~~~-~~~t~i~i~G~--DKq~Vgq~AA~Ir~~~~yK 165 (189)
.+|+|+.++-. -+.+.+.|+|. |.+.|.+|..++++..-++
T Consensus 9 ~~P~~v~l~~l~~~~~~l~i~G~a~~~~~v~~f~~~L~~~~~f~ 52 (78)
T PF05137_consen 9 ALPEGVWLTSLSINGNTLSISGYADSYQSVAAFLRNLEQSPFFS 52 (78)
T ss_pred hCCCCEEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHhhCCCcc
Confidence 57999988775 34678888886 5788888888888764333
No 41
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=31.37 E-value=37 Score=23.92 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=13.6
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|+.++|++.++.++|+|.
T Consensus 23 ~edi~V~v~~~~L~I~g~ 40 (86)
T cd06475 23 PEELVVKTKDGVVEITGK 40 (86)
T ss_pred HHHEEEEEECCEEEEEEE
Confidence 467778887788888874
No 42
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=30.24 E-value=1.1e+02 Score=22.94 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=29.2
Q ss_pred EEeCCCCeEEEec--CCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 123 RVKMAPGVKVSNS--KQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 123 ~~~IP~gi~v~~~--~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
..++|+.....+. +++++++++-.|-|++.+--|.||.
T Consensus 67 ~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 67 RLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 3456665555443 3578999999999999999999984
No 43
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=29.01 E-value=38 Score=29.67 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=28.5
Q ss_pred cCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHH
Q psy7620 116 LGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVS 152 (189)
Q Consensus 116 LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vg 152 (189)
=.|||.++-.+|....+.- +++.++++|++-=+-+
T Consensus 167 Pvysh~~yD~vpd~~~v~~--~pdIlI~EG~nvLq~~ 201 (283)
T COG1072 167 PVYSHLIYDPVPDAFQVVP--QPDILIVEGNNVLQDG 201 (283)
T ss_pred ccccccccccCCCceeecC--CCCEEEEechhhhcCC
Confidence 6899999999999888754 5789999999854333
No 44
>PRK14424 acylphosphatase; Provisional
Probab=28.19 E-value=41 Score=24.43 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=32.8
Q ss_pred eeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh
Q psy7620 86 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS 161 (189)
Q Consensus 86 f~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~ 161 (189)
+...=++.|||||..+. .....+-| +--+. .+|+| + =+|.++|.+ +.|-+|.+.|++.
T Consensus 11 ~~v~G~VQGVGFR~~v~--~~A~~~gl------~G~V~-N~~dG-~-------Vei~~qG~~-~~v~~f~~~l~~g 68 (94)
T PRK14424 11 VRVRGVVQGVGFRHATV--REAHALGL------RGWVA-NLEDG-T-------VEAMIQGPA-AQIDRMLAWLRHG 68 (94)
T ss_pred EEEEEeecCCchHHHHH--HHHHHcCC------eEEEE-ECCCC-C-------EEEEEEECH-HHHHHHHHHHHhC
Confidence 33334567899986643 11222333 33332 55555 0 146677866 4499999999854
No 45
>cd00068 GGL G protein gamma subunit-like motifs, the alpha-helical G-gamma chain dimerizes with the G-beta propeller subunit as part of the heterotrimeric G-protein complex; involved in signal transduction via G-protein-coupled receptors
Probab=27.59 E-value=46 Score=21.81 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=22.2
Q ss_pred cHhHHHHHHHHHhhh-ccccCcceeeeeCcE
Q psy7620 147 DIENVSRSAALIQQS-TTVKNKDIRKFLDGL 176 (189)
Q Consensus 147 DKq~Vgq~AA~Ir~~-~~yKgKgir~f~dgi 176 (189)
..-+|++.|+.|.+| +.+...|+ |+-|.
T Consensus 18 ~RikvS~a~~~l~~y~e~~~~~Dp--ll~g~ 46 (57)
T cd00068 18 ERLKVSKAAAELLKYCEQNAENDP--LLTGP 46 (57)
T ss_pred chhhHHHHHHHHHHHHHhcCCCCC--CCCCC
Confidence 456799999999999 78888887 45554
No 46
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=26.35 E-value=2.3e+02 Score=21.21 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=23.8
Q ss_pred eeeeEeCCCeEEEEeCC-----EEEEEeCCeEEEEEcc
Q psy7620 7 NQTVKIPRGLQCFVKAR-----TVTVKGPRGTLKRDFK 39 (189)
Q Consensus 7 ~~~I~IP~~V~v~i~~~-----~v~v~Gp~G~l~~~l~ 39 (189)
...+.||+|.+|.++.. .+.| .|+|.++-.
T Consensus 12 g~~V~I~~g~~v~lD~~~~~l~~l~I---~G~L~f~~~ 46 (125)
T PF10162_consen 12 GDNVVIPAGQTVLLDVSTPKLGSLII---GGTLIFDDD 46 (125)
T ss_pred CCEEEECCCCEEEEcCCChheeEEEE---EEEEEEccC
Confidence 45789999999999875 6667 788888764
No 47
>PF00712 DNA_pol3_beta: DNA polymerase III beta subunit, N-terminal domain; InterPro: IPR022634 This entry describes the N-terminal domain of the beta chain of DNA polymerase III. This is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The beta chain is required for initiation of replication from an RNA primer, nucleotide triphosphate (dNTP) residues being added to the 5'-end of the growing DNA chain.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3P16_A 3RB9_B 2AWA_C 1VPK_A 2XUR_B 3Q4K_A 3BEP_A 3D1G_A 1UNN_B 3Q4J_D ....
Probab=25.41 E-value=1.2e+02 Score=22.15 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=35.1
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEE
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVE 56 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~ 56 (189)
-.+..++|=.||.++.+++.+++++-..++.....- ..+...++ +.+.+.
T Consensus 22 ~~k~~~piL~~ili~a~~~~l~l~atD~e~~i~~~i-~~~~~~~~-G~~~v~ 71 (120)
T PF00712_consen 22 PSKSTIPILSNILIEAKDNKLTLTATDLEISIRTTI-PAEIEEEE-GSILVP 71 (120)
T ss_dssp SSSSSSGGGGEEEEEEETTEEEEEEE-SSEEEEEEE-ETEEEEE--EEEEEE
T ss_pred CCCCChHHhccEEEEEeCCEEEEEEEcCeEEEEEEE-eceeecCC-eEEEEE
Confidence 345566777999999999999999999888877553 33333344 777776
No 48
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=25.33 E-value=1e+02 Score=23.63 Aligned_cols=26 Identities=27% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEecccCceeEEEEeCCCCeEEEec
Q psy7620 109 LLEIRNFLGEKYIRRVKMAPGVKVSNS 135 (189)
Q Consensus 109 ~L~lkn~LG~Sh~i~~~IP~gi~v~~~ 135 (189)
.|.++||.+|.+ ..+..++|+++-+-
T Consensus 1 ~i~i~nf~~~~~-~~i~f~~g~~vi~G 26 (202)
T PF13476_consen 1 KIHIKNFRSFKD-LEIDFSPGLNVIYG 26 (202)
T ss_dssp EEEEEEETTEEE-EEEE--SEEEEEEE
T ss_pred CEEEEEeCCCcc-eEEEcCCCcEEEEC
Confidence 378999999966 55888888888773
No 49
>COG3466 ISA1214 Putative transposon-encoded protein [Function unknown]
Probab=24.96 E-value=1.3e+02 Score=19.59 Aligned_cols=39 Identities=13% Similarity=0.237 Sum_probs=28.9
Q ss_pred Ccee-eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEccc
Q psy7620 1 MRQI-VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKH 40 (189)
Q Consensus 1 m~~i-~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~ 40 (189)
|+++ +.+...-+|+++++.++ +.++-=|..|.+..+=.+
T Consensus 1 ~~r~kI~k~~~il~~~ve~~~e-k~VtpfGnsakVdvPK~y 40 (52)
T COG3466 1 MRRVKIKKGDFILKEEVEVVFE-KRVTPFGNSAKVDVPKRY 40 (52)
T ss_pred CceEEEeeccEEechheEEEEE-EEEEecCCcceeeCchHH
Confidence 5566 45567788999999998 577877888887665444
No 50
>KOG4119|consensus
Probab=24.26 E-value=49 Score=23.08 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=23.8
Q ss_pred EccHhHHHHHHHHHhhh-ccccCcceeeeeCcEE
Q psy7620 145 GNDIENVSRSAALIQQS-TTVKNKDIRKFLDGLY 177 (189)
Q Consensus 145 G~DKq~Vgq~AA~Ir~~-~~yKgKgir~f~dgiy 177 (189)
++|...|++.||.+++| |.-.++|. ++.|+-
T Consensus 24 ~~~R~~vS~a~~el~~y~E~~~~~Dp--Ll~gv~ 55 (71)
T KOG4119|consen 24 NIERIKVSKAAAELLEYCETHATEDP--LLEGVP 55 (71)
T ss_pred HhhHhhHHHHHHHHHHHHHhcCccCc--cccCCc
Confidence 45788999999999999 56677775 556654
No 51
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=23.23 E-value=1.7e+02 Score=18.45 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.7
Q ss_pred CEEEEEEccHhHHHHHHHHH
Q psy7620 139 DELIIEGNDIENVSRSAALI 158 (189)
Q Consensus 139 t~i~i~G~DKq~Vgq~AA~I 158 (189)
..+.|+| +.+.|-+..+.|
T Consensus 42 ~~v~I~G-~~~~v~~A~~~I 60 (60)
T PF00013_consen 42 DIVTISG-SPEQVEKAKKMI 60 (60)
T ss_dssp EEEEEEE-SHHHHHHHHHHH
T ss_pred EEEEEEe-CHHHHHHHHhhC
Confidence 5799999 888887766554
No 52
>PF00338 Ribosomal_S10: Ribosomal protein S10p/S20e; InterPro: IPR001848 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Evidence suggests that, in prokaryotes, the peptidyl transferase reaction is performed by the large subunit 23S rRNA, whereas proteins probably have a greater role in eukaryotic ribosomes. Most of the proteins lie close to, or on the surface of, the 30S subunit, arranged peripherally around the rRNA []. The small subunit ribosomal proteins can be categorised as primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S10 consists of about 100 amino acid residues. In Escherichia coli, S10 is involved in binding tRNA to the ribosome, and also operates as a transcriptional elongation factor []. Experimental evidence [] has revealed that S10 has virtually no groups exposed on the ribosomal surface, and is one of the "split proteins": these are a discrete group that are selectively removed from 30S subunits under low salt conditions and are required for the formation of activated 30S reconstitution intermediate (RI*) particles. S10 belongs to a family of proteins [] that includes: bacteria S10; algal chloroplast S10; cyanelle S10; archaebacterial S10; Marchantia polymorpha and Prototheca wickerhamii mitochondrial S10; Arabidopsis thaliana mitochondrial S10 (nuclear encoded); vertebrate S20; plant S20; and yeast URP2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1S1H_J 3U5G_U 3O30_N 3O2Z_N 3IZB_J 3U5C_U 3R2C_J 3R2D_J 2ZKQ_j 2XQD_J ....
Probab=22.88 E-value=1.2e+02 Score=21.39 Aligned_cols=29 Identities=7% Similarity=0.075 Sum_probs=24.1
Q ss_pred EEEEEEccHhHHHHHHHHHhhhccccCcc
Q psy7620 140 ELIIEGNDIENVSRSAALIQQSTTVKNKD 168 (189)
Q Consensus 140 ~i~i~G~DKq~Vgq~AA~Ir~~~~yKgKg 168 (189)
+|.|+|-|...|-.+|..|.++....|-.
T Consensus 2 ~I~l~s~d~~~l~~~~~~i~~~~~~~~~~ 30 (97)
T PF00338_consen 2 RIKLKSYDKKLLESYVKFIHKLAKNLGIK 30 (97)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHCTSSC
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHHhCCc
Confidence 48899999999999999999986544443
No 53
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=21.69 E-value=47 Score=25.00 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=11.8
Q ss_pred eeeeCcEEEeeeee
Q psy7620 170 RKFLDGLYVSEKTT 183 (189)
Q Consensus 170 r~f~dgiyv~~K~~ 183 (189)
.+|.||+|++|.+-
T Consensus 52 l~F~dG~W~~e~~~ 65 (108)
T cd07429 52 LVFEDGRWISESGG 65 (108)
T ss_pred EEeeCCEEecCCCC
Confidence 46999999999765
No 54
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=21.45 E-value=2e+02 Score=18.20 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=14.4
Q ss_pred CCEEEEEEccHhHHHHHHHHH
Q psy7620 138 KDELIIEGNDIENVSRSAALI 158 (189)
Q Consensus 138 ~t~i~i~G~DKq~Vgq~AA~I 158 (189)
.+.++|+|. .+.|-...+.|
T Consensus 42 ~~~v~I~G~-~~~v~~A~~~i 61 (62)
T cd02394 42 SDTITITGP-KENVEKAKEEI 61 (62)
T ss_pred CCEEEEEcC-HHHHHHHHHHh
Confidence 578999999 56666655544
No 55
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=21.31 E-value=69 Score=21.36 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.3
Q ss_pred CCCeEEEEeCCEEEEEeCCe
Q psy7620 13 PRGLQCFVKARTVTVKGPRG 32 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G 32 (189)
|++++|++.++.|.|+|.+-
T Consensus 20 ~~~i~V~v~~~~l~I~g~~~ 39 (88)
T cd06464 20 KEDIKVEVEDGVLTISGERE 39 (88)
T ss_pred HHHeEEEEECCEEEEEEEEe
Confidence 47889999999999987553
No 56
>PRK10743 heat shock protein IbpA; Provisional
Probab=20.91 E-value=66 Score=24.88 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.4
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|+.++|+++++.++++|.
T Consensus 58 kedi~V~v~~~~LtI~ge 75 (137)
T PRK10743 58 ESELEITAQDNLLVVKGA 75 (137)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 467788888888888884
No 57
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=20.58 E-value=68 Score=25.08 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred CCCeEEEEeCCEEEEEeC
Q psy7620 13 PRGLQCFVKARTVTVKGP 30 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp 30 (189)
|++++|+++++.++++|.
T Consensus 56 kedi~V~v~~~~LtI~ge 73 (142)
T PRK11597 56 QEDLDIQLEGTRLTVKGT 73 (142)
T ss_pred HHHeEEEEECCEEEEEEE
Confidence 467899999999999985
No 58
>PRK14940 DNA polymerase III subunit beta; Provisional
Probab=20.39 E-value=6e+02 Score=22.43 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=37.0
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEE
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVE 56 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~ 56 (189)
-.+..++|-.||-++.+++.++++|-.+++.....- ..++. ++ +.+.+.
T Consensus 22 ~~k~~~piL~~ill~a~~~~l~l~atD~e~~i~~~i-~~~i~-e~-G~v~v~ 70 (367)
T PRK14940 22 STKKALSILSNVLLAAQDGSLTIKATDTKVSFETSI-PVNIL-AE-GSTTVF 70 (367)
T ss_pred cCCCchHHhcCEEEEEECCEEEEEEECCceEEEEEE-Eeeec-cC-eEEEEE
Confidence 345567888999999999999999999998887543 44443 33 777775
Done!