Query psy7620
Match_columns 189
No_of_seqs 164 out of 1066
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 23:01:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 1.4E-71 4.8E-76 453.6 21.0 187 1-188 1-190 (190)
2 3u5e_H L8, RP24, YL11, 60S rib 100.0 5.4E-71 1.8E-75 450.5 21.7 186 1-187 1-190 (191)
3 4a17_E RPL9, 60S ribosomal pro 100.0 4.4E-71 1.5E-75 450.0 18.6 184 1-186 1-187 (188)
4 2zkr_e 60S ribosomal protein L 100.0 1.5E-70 5E-75 448.4 19.0 187 1-188 1-191 (192)
5 3j21_F 50S ribosomal protein L 100.0 1E-67 3.5E-72 428.9 19.5 179 2-185 3-181 (184)
6 1vq8_E 50S ribosomal protein L 100.0 2.3E-67 7.8E-72 424.6 20.5 177 6-187 2-178 (178)
7 3v2d_H 50S ribosomal protein L 100.0 2.4E-60 8.2E-65 384.7 16.7 168 5-183 4-174 (180)
8 1nkw_E 50S ribosomal protein L 100.0 3.8E-59 1.3E-63 384.8 21.9 171 1-183 28-201 (212)
9 1rl6_A Protein (ribosomal prot 100.0 3E-59 1E-63 377.3 17.2 167 5-182 3-172 (177)
10 3r8s_G 50S ribosomal protein L 100.0 8.9E-59 3E-63 374.3 13.2 167 5-182 3-172 (176)
11 3bbo_I Ribosomal protein L6; l 100.0 2.3E-58 8E-63 382.9 9.2 170 1-182 43-216 (223)
12 2zjr_E 50S ribosomal protein L 100.0 8.7E-59 3E-63 376.7 0.8 170 1-182 1-173 (185)
13 2cql_A OK/SW-CL.103, 60S ribos 100.0 7.1E-30 2.4E-34 188.5 8.6 88 1-89 8-98 (100)
14 2bol_A TSP36, small heat shock 84.1 7.4 0.00025 33.1 9.9 46 13-59 125-187 (314)
15 2cql_A OK/SW-CL.103, 60S ribos 75.2 2.1 7.3E-05 30.5 3.0 23 123-147 16-38 (100)
16 3q9p_A Heat shock protein beta 64.0 19 0.00065 24.1 5.8 45 13-58 20-82 (85)
17 3j21_F 50S ribosomal protein L 61.1 7.6 0.00026 30.6 3.8 21 9-29 121-141 (184)
18 1vq8_E 50S ribosomal protein L 57.8 9.1 0.00031 30.1 3.7 21 9-29 116-136 (178)
19 4fei_A Heat shock protein-rela 57.1 23 0.00079 24.4 5.4 45 13-58 29-92 (102)
20 3gla_A Low molecular weight he 57.0 36 0.0012 23.0 6.5 45 13-58 27-95 (100)
21 2y1y_A Alpha-crystallin B chai 55.3 25 0.00084 23.7 5.2 45 13-58 19-81 (90)
22 2wj5_A Heat shock protein beta 54.6 24 0.00083 24.4 5.2 45 13-58 24-86 (101)
23 4eld_A MJ16.5-P1, small heat s 54.3 21 0.00073 26.7 5.2 46 13-59 79-149 (161)
24 1rl6_A Protein (ribosomal prot 52.7 11 0.00036 29.6 3.3 27 149-175 62-99 (177)
25 3iz5_F 60S ribosomal protein L 51.4 14 0.00046 29.3 3.8 34 128-161 41-79 (190)
26 3u5e_H L8, RP24, YL11, 60S rib 51.2 13 0.00044 29.5 3.6 21 9-29 125-148 (191)
27 2zkr_e 60S ribosomal protein L 49.7 9.1 0.00031 30.4 2.5 13 149-161 68-80 (192)
28 3v2d_H 50S ribosomal protein L 49.4 11 0.00038 29.5 2.9 13 149-161 63-75 (180)
29 2klr_A Alpha-crystallin B chai 44.4 32 0.0011 26.5 4.9 46 13-59 86-149 (175)
30 4a17_E RPL9, 60S ribosomal pro 43.2 16 0.00054 28.9 2.9 14 9-22 123-136 (188)
31 3aab_A Putative uncharacterize 41.8 48 0.0017 23.5 5.2 45 13-58 47-113 (123)
32 2zjr_E 50S ribosomal protein L 40.8 14 0.00047 29.1 2.2 22 9-30 114-136 (185)
33 2ctf_A Vigilin; K homology typ 40.6 49 0.0017 23.1 5.0 32 129-161 58-89 (102)
34 1nkw_E 50S ribosomal protein L 40.3 1.1E+02 0.0038 24.5 7.6 72 101-177 42-129 (212)
35 3r8s_G 50S ribosomal protein L 36.6 26 0.00088 27.3 3.2 21 9-29 113-134 (176)
36 3bbo_I Ribosomal protein L6; l 35.2 16 0.00054 29.8 1.7 22 9-30 157-179 (223)
37 3l1e_A Alpha-crystallin A chai 29.4 30 0.001 24.1 2.3 19 13-31 25-43 (106)
38 2jug_A TUBC protein; docking d 27.5 21 0.00073 23.6 1.1 26 14-39 17-42 (78)
39 1gme_A Heat shock protein 16.9 27.1 1.2E+02 0.0042 22.3 5.5 46 13-59 66-136 (151)
40 2w7a_A LINE-1 ORF1P; RNA-bindi 26.5 36 0.0012 24.2 2.2 28 146-174 73-100 (100)
41 2cpq_A FragIle X mental retard 26.2 1.2E+02 0.0041 20.9 4.9 34 129-162 45-79 (91)
42 3j20_L 30S ribosomal protein S 24.6 67 0.0023 22.6 3.4 28 139-166 4-31 (102)
43 3v5w_G G gamma-I, guanine nucl 21.5 20 0.00068 24.4 0.0 25 145-169 30-55 (77)
44 3d3c_J 30S ribosomal protein S 21.2 82 0.0028 21.5 3.2 25 138-162 10-34 (87)
45 3kd4_A Putative protease; stru 21.2 1.2E+02 0.0041 26.9 5.1 34 7-40 428-461 (506)
46 2opv_A KHSRP protein; KH domai 20.3 1.5E+02 0.0052 19.4 4.4 20 141-161 63-82 (85)
47 3r8n_J 30S ribosomal protein S 20.0 52 0.0018 22.8 2.0 25 140-164 3-27 (98)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=1.4e-71 Score=453.59 Aligned_cols=187 Identities=57% Similarity=0.949 Sum_probs=178.5
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEE--ecccEEEEEeccCchhhhhHHHhHHHHHhhh
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHM--VNKRVLKVEKWFGTKKEIAAVRTVCSHISNM 78 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~--~~~~~l~v~~~~~~k~~~a~~gt~rsli~Nm 78 (189)
||+|+.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++.. ++ +.+.+++|+++|+++|+|||+||||+||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~-~~l~v~~~~~~kk~~a~~gt~rsli~Nm 79 (190)
T 3iz5_F 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGG-RKLQVDAWFGTRRTMAAIRTAISHVQNL 79 (190)
T ss_dssp CCCCCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTT-TEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCC-CEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999876788877 66 8999999999999999999999999999
Q ss_pred eeeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCC-CCEEEEEEccHhHHHHHHHH
Q psy7620 79 LKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAAL 157 (189)
Q Consensus 79 I~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~-~t~i~i~G~DKq~Vgq~AA~ 157 (189)
|+|||+||+|+|+++|+|||+.+.++.+|+.|+|+||||||||+.++||+||+++++++ +|+|+|+|+|||+|||+||+
T Consensus 80 I~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~ 159 (190)
T 3iz5_F 80 ITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAAL 159 (190)
T ss_dssp HHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHH
T ss_pred eeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHH
Confidence 99999999999999999999988777889999999999999999999999999999832 37999999999999999999
Q ss_pred HhhhccccCcceeeeeCcEEEeeeeeeeeCC
Q psy7620 158 IQQSTTVKNKDIRKFLDGLYVSEKTTVVTDA 188 (189)
Q Consensus 158 Ir~~~~yKgKgir~f~dgiyv~~K~~~~~~~ 188 (189)
||++|.+|+||+|+|||||||+||++++|++
T Consensus 160 Irq~~~vk~kD~R~F~DGiyv~ek~~~~~~~ 190 (190)
T 3iz5_F 160 INQKCHVKNKDIRKFLDGIYVSDKGTITEDA 190 (190)
T ss_dssp HHHHTCCCSSCTTTCCCEEEECCCCCCCCCC
T ss_pred HHhhccccCCcccEeecCEEEEeeeEEeccC
Confidence 9999999999999999999999999998875
No 2
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=5.4e-71 Score=450.47 Aligned_cols=186 Identities=47% Similarity=0.783 Sum_probs=176.8
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEE-EecccEEEEEeccCchhhhhHHHhHHHHHhhhe
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIH-MVNKRVLKVEKWFGTKKEIAAVRTVCSHISNML 79 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~-~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI 79 (189)
||+|+.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++. .++ +.+.+++|+++|+++|+|||+||||+|||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~-~~l~v~~~~~~kk~~a~~gt~rsli~NmI 79 (191)
T 3u5e_H 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNN-QLIKVAVHNGGRKHVAALRTVKSLVDNMI 79 (191)
T ss_dssp CCEEEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEET-TEEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecC-CeEEEEECCCCHHHHHHHHHHHHHHHhhe
Confidence 9999999999999999999999999999999999999998677776 566 89999999999999999999999999999
Q ss_pred eeeccceeeeeEEeeeeeeeeEEE--ccCCcEEEEecccCceeEEEEeCCCCeEEEecC-CCCEEEEEEccHhHHHHHHH
Q psy7620 80 KGVTKGFLYKMRAAYAHFPINCVT--SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAA 156 (189)
Q Consensus 80 ~GVt~Gf~~~L~lvGvgy~~~~~~--~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~-~~t~i~i~G~DKq~Vgq~AA 156 (189)
+|||+||+|+|+++|+|||+++.+ +.+|+.|+|+||||||||+.++||+||++++++ ++|+|+|+|+|||+|||+||
T Consensus 80 ~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA 159 (191)
T 3u5e_H 80 TGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAA 159 (191)
T ss_dssp HHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHH
T ss_pred eeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHH
Confidence 999999999999999999988766 678999999999999999999999999999983 24999999999999999999
Q ss_pred HHhhhccccCcceeeeeCcEEEeeeeeeeeC
Q psy7620 157 LIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 187 (189)
Q Consensus 157 ~Ir~~~~yKgKgir~f~dgiyv~~K~~~~~~ 187 (189)
+||++|.+|+||+|+|||||||+||++++++
T Consensus 160 ~Irq~~~vk~kD~R~FlDGiyv~ek~~~~~~ 190 (191)
T 3u5e_H 160 DLQQICRVRNKDIRKFLDGIYVSHKGFITED 190 (191)
T ss_dssp HHHHTTCCCSSCTTTCCCEEEEEEEEESSSC
T ss_pred HHHhhcccCCCcccEeecCeEEEEeeEEEec
Confidence 9999999999999999999999999999876
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=4.4e-71 Score=450.01 Aligned_cols=184 Identities=43% Similarity=0.776 Sum_probs=175.7
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEE-ecccEEEEEeccCchhhhhHHHhHHHHHhhhe
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHM-VNKRVLKVEKWFGTKKEIAAVRTVCSHISNML 79 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~-~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI 79 (189)
||+|+.++||.||+||+|+++++.|+|+||+|+|+++|+|..+++.. ++ +.+.+++|+++|+++|+|||+||||+|||
T Consensus 1 Mk~i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~-~~l~v~~~~~~kk~~a~~gt~rsli~NmI 79 (188)
T 4a17_E 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTA-DNVKLQIWQASRKERAVLQSIASQIKNMI 79 (188)
T ss_dssp CCEEEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBT-TBCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceeeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccC-CeEEEEECCCCHHHHHHHHHHHHHHHhhe
Confidence 99999999999999999999999999999999999999986778776 66 89999999999999999999999999999
Q ss_pred eeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCC--CEEEEEEccHhHHHHHHHH
Q psy7620 80 KGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQK--DELIIEGNDIENVSRSAAL 157 (189)
Q Consensus 80 ~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~--t~i~i~G~DKq~Vgq~AA~ 157 (189)
+|||+||+|+|+++|+|||+.+.++.+|+.|+|+||||||||+.++||+||+++++ ++ |+|+|+|+|||+|||+||+
T Consensus 80 ~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~-~~~k~eIil~G~Dke~Vgq~AA~ 158 (188)
T 4a17_E 80 RGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRK-DEEKNTLTLQGIDLNNVSQTCAL 158 (188)
T ss_dssp HHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECC-TTSSSEEEEEESCHHHHHHHHHH
T ss_pred EeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEEC-CCCCCEEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999887788899999999999999999999999999998 44 8999999999999999999
Q ss_pred HhhhccccCcceeeeeCcEEEeeeeeeee
Q psy7620 158 IQQSTTVKNKDIRKFLDGLYVSEKTTVVT 186 (189)
Q Consensus 158 Ir~~~~yKgKgir~f~dgiyv~~K~~~~~ 186 (189)
||++|.+|+||+|+|||||||+||+++++
T Consensus 159 Ir~~~~vk~kD~R~F~DGiyv~ek~~~~~ 187 (188)
T 4a17_E 159 IHQSCLVKEKDIRQFLDGIYVSDKRLAMN 187 (188)
T ss_dssp HHHHTCCCSSCHHHHCCEEEEEEEEECC-
T ss_pred HHhhcccCCCcccEeecCeEEEEeEEEec
Confidence 99999999999999999999999999875
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.5e-70 Score=448.37 Aligned_cols=187 Identities=66% Similarity=1.054 Sum_probs=163.2
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccE---EEEEeccCchhhhhHHHhHHHHHhh
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRV---LKVEKWFGTKKEIAAVRTVCSHISN 77 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~---l~v~~~~~~k~~~a~~gt~rsli~N 77 (189)
|++++.++||+||+||+|+++++.|+|+||+|+|+++|+++.+++..++ +. +.+++|+++++++|+|||+||||+|
T Consensus 1 Mk~~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~-~~~~~i~v~~~~~~k~~~a~~Gt~rsli~N 79 (192)
T 2zkr_e 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLG-KKKKRLRVDKWWGNRKELATVRTICSHVQN 79 (192)
T ss_dssp ---------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEET-TTTCEEEEECSCCCHHHHHHHHHHHHHHHH
T ss_pred CCcccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEec-CceeEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998677887787 77 9999999999999999999999999
Q ss_pred heeeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCC-CCEEEEEEccHhHHHHHHH
Q psy7620 78 MLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAA 156 (189)
Q Consensus 78 mI~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~-~t~i~i~G~DKq~Vgq~AA 156 (189)
||+|||+||+++|+++|+|||+.+.++.+|+.|+|+||||||||+.++||+||+++++++ +|+|+|+|+|||+||||||
T Consensus 80 mI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA 159 (192)
T 2zkr_e 80 MIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAA 159 (192)
T ss_dssp HHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHH
T ss_pred EEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999887777689999999999999999999999999999832 4999999999999999999
Q ss_pred HHhhhccccCcceeeeeCcEEEeeeeeeeeCC
Q psy7620 157 LIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDA 188 (189)
Q Consensus 157 ~Ir~~~~yKgKgir~f~dgiyv~~K~~~~~~~ 188 (189)
+||++|+.|+||+|+|||||||+||++++++|
T Consensus 160 ~IR~~~~vk~kD~R~F~Dgiyv~~k~~~~~~~ 191 (192)
T 2zkr_e 160 LIQQATTVKNKDIRKFLDGIYVSEKGTVQQAD 191 (192)
T ss_dssp HHHHHTCCSSSCTTTCCCEEEEEEC-------
T ss_pred HHHhhCcCCCCCccEeecCEEEEEeccccccC
Confidence 99999999999999999999999999998876
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-67 Score=428.91 Aligned_cols=179 Identities=40% Similarity=0.636 Sum_probs=167.9
Q ss_pred ceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheee
Q psy7620 2 RQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKG 81 (189)
Q Consensus 2 ~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~G 81 (189)
+....++||+||+||+|+++++.|+|+||+|+|+++|+|..+++..++ +.+.+++|+++|+++|+|||+||||+|||+|
T Consensus 3 ~~~~~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~-~~l~v~~~~~~kk~~a~~gt~rsli~NmI~G 81 (184)
T 3j21_F 3 VDAWIREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTED-GNVVIYKDFPRRKDVAIARTFAAHIRNMIKG 81 (184)
T ss_dssp CCSSCEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEET-TEEEEECSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchheeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeC-CEEEEEECCCCHHHHHHHHHHHHHHHhhhee
Confidence 345678999999999999999999999999999999986578888788 8999999999999999999999999999999
Q ss_pred eccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh
Q psy7620 82 VTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS 161 (189)
Q Consensus 82 Vt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~ 161 (189)
||+||+|+|+++|+|||+++.++ |+.|+|+||||||||+.++||+||+++++ + ++|+|+|+|||+|||+||+||++
T Consensus 82 Vt~Gf~~kL~lvgvgypira~~~--g~~l~l~n~LG~sh~v~~~ip~gv~v~v~-~-~~Iil~G~Dke~Vgq~AA~Ir~~ 157 (184)
T 3j21_F 82 VTEGFTYKLKVVYSHFPISVKVQ--GDEVIIENFLGEKAPRKAKILPGVTVKVR-G-QEIIVEGIDKEAVGQTAANIEQA 157 (184)
T ss_dssp HHTCEEEEEEEECSSSCCEEEEE--TTEEEEECGGGCSSCEEEECCTTEEEEEE-T-TEEEEEESCHHHHHHHHHHHHHH
T ss_pred eccCeEEEEEEEEecccceEEEc--CCEEEEEecCCccccEEEECCCCeEEEec-C-CEEEEEECCHHHHHHHHHHHhhc
Confidence 99999999999999999886554 89999999999999999999999999997 3 59999999999999999999999
Q ss_pred ccccCcceeeeeCcEEEeeeeeee
Q psy7620 162 TTVKNKDIRKFLDGLYVSEKTTVV 185 (189)
Q Consensus 162 ~~yKgKgir~f~dgiyv~~K~~~~ 185 (189)
|+|||||+|+|||||||+||+...
T Consensus 158 ~~vK~KDiR~F~DGiyv~ek~~~~ 181 (184)
T 3j21_F 158 TRITKWDRRIFQDGIYIVEKAGKP 181 (184)
T ss_dssp HCCCSSCSSSCCCEEEESCSSSCC
T ss_pred cccCCCcccEeeCCEEEEecCccc
Confidence 999999999999999999998654
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=2.3e-67 Score=424.60 Aligned_cols=177 Identities=32% Similarity=0.508 Sum_probs=162.3
Q ss_pred ceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeeccc
Q psy7620 6 SNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTKG 85 (189)
Q Consensus 6 ~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~G 85 (189)
.++||+||+||+|+++++.|+|+||+|+|+++|+|..+++..++ +.+.+++|+++|+++|+|||+||||+|||+|||+|
T Consensus 2 ~~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~-~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~G 80 (178)
T 1vq8_E 2 PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDG-DTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEG 80 (178)
T ss_dssp CEEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEET-TEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEEC-CEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccC
Confidence 35799999999999999999999999999999955467777788 89999999999999999999999999999999999
Q ss_pred eeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhhcccc
Q psy7620 86 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVK 165 (189)
Q Consensus 86 f~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~~~yK 165 (189)
|+++|+++|+||||++.+ +|+.|+|+||||||||+.++||+||+++++ + |+|+|+|+|||+|||+||+||++++.|
T Consensus 81 f~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~-~-~~I~v~G~Dkq~Vgq~AA~Ir~~r~pK 156 (178)
T 1vq8_E 81 WEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEID-G-EELTVSGPDIEAVGQTAADIEQLTRIN 156 (178)
T ss_dssp EEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEE-T-TEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred eEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEe-C-CEEEEEECCHHHHHHHHHHHhccCCCC
Confidence 999999999999877655 488899999999999999999999999997 4 999999999999999999999998889
Q ss_pred CcceeeeeCcEEEeeeeeeeeC
Q psy7620 166 NKDIRKFLDGLYVSEKTTVVTD 187 (189)
Q Consensus 166 gKgir~f~dgiyv~~K~~~~~~ 187 (189)
|||||+|+||||++||++..++
T Consensus 157 GKGIr~F~DGiyi~~k~~~~~~ 178 (178)
T 1vq8_E 157 DKDVRVFQDGVYITRKPNRGDA 178 (178)
T ss_dssp SSCTTTCCCEEEEEECC-----
T ss_pred CCceeEEECCEEEEecccccCC
Confidence 9999999999999999987653
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=2.4e-60 Score=384.72 Aligned_cols=168 Identities=21% Similarity=0.285 Sum_probs=157.7
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeecc
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 84 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 84 (189)
++++||.||+||+|+++++.|+|+||+|+|+++|+| .+++..++ +.|.+++|+++++++|+|||+||||+|||+|||+
T Consensus 4 igk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~-~v~i~~~~-~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~ 81 (180)
T 3v2d_H 4 IGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSP-EMRVVVEE-GVVRVERPSDERRHKSLHGLTRTLIANAVKGVSE 81 (180)
T ss_dssp TTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCT-TSEEEEET-TEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCC-CEEEEEEC-CEEEEEECCCcHHHHHHHHHHHHHHhhhEEeecC
Confidence 467899999999999999999999999999999998 67777777 8999999999999999999999999999999999
Q ss_pred ceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh---
Q psy7620 85 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS--- 161 (189)
Q Consensus 85 Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~--- 161 (189)
||+++|+++|+|||+. .+|+.|+|. ||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++
T Consensus 82 Gf~~kL~lvgvgyra~----~~g~~l~l~--LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~r~P 154 (180)
T 3v2d_H 82 GYSKELLIKGIGYRAR----LVGRALELT--VGFSHPVVVEPPEGITFEVP-EPTRVRVSGIDKQKVGQVAANIRAIRKP 154 (180)
T ss_dssp CEEEEEEEESTTCEEE----EETTEEEEE--CSSSSCEEECCCTTCEEECS-STTEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred CcEEEEEEEEEeeEEE----ECCCEEEEE--ecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhcccCCC
Confidence 9999999999999853 358999995 99999999999999999998 5699999999999999999999999
Q ss_pred ccccCcceeeeeCcEEEeeeee
Q psy7620 162 TTVKNKDIRKFLDGLYVSEKTT 183 (189)
Q Consensus 162 ~~yKgKgir~f~dgiyv~~K~~ 183 (189)
|||||||||. ||+||.+|.-
T Consensus 155 epYKGKGIry--~~e~I~~K~g 174 (180)
T 3v2d_H 155 SAYHEKGIYY--AGEPVRLKPG 174 (180)
T ss_dssp CSSSSCEEEE--TTCCCCCCCC
T ss_pred CCcCCCcccC--CCEEEEEeCc
Confidence 7899999985 9999999864
No 8
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=3.8e-59 Score=384.85 Aligned_cols=171 Identities=21% Similarity=0.318 Sum_probs=159.7
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|.+| +++||+||+||+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.+++|+++++++|+|||+||||+|||+
T Consensus 28 MSRI-gk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~e~-~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~ 104 (212)
T 1nkw_E 28 MSRI-GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVRQDG-DQLLVERPSDAQKHRALHGLTRTLVANAVK 104 (212)
T ss_pred cccc-cccceecCCCcEEEEeCCEEEEECCCEEEEEECCC-CeEEEEEC-CEEEEEcCCCCHHHHHHHHHHHHHhhCEEE
Confidence 8888 99999999999999999999999999999999998 78888788 899999999999999999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
|||+||+++|+++|+|||+ +.+|+.|+|. ||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||+
T Consensus 105 GVt~Gf~kkLelvGvGYra----~~~G~~L~L~--LG~SHpv~~~iP~GI~v~v~-~~t~Iiv~GiDKq~VGq~AA~IR~ 177 (212)
T 1nkw_E 105 GVSDGYTINLELRGVGFRA----KLTGKALEMN--IGYSHPVIIEPPAGVTFAVP-EPTRIDVSGIDKQLVGQVAANVRK 177 (212)
T ss_pred eeccCeEEEEEEeeeeeEE----EcCCCEEEEE--ccCCccEEEECCCCeEEEeC-CCCEEEEEeCCHHHHHHHHHHHhc
Confidence 9999999999999999984 4569999995 99999999999999999998 569999999999999999999999
Q ss_pred h---ccccCcceeeeeCcEEEeeeee
Q psy7620 161 S---TTVKNKDIRKFLDGLYVSEKTT 183 (189)
Q Consensus 161 ~---~~yKgKgir~f~dgiyv~~K~~ 183 (189)
+ ||||||||| ..|++|..|.-
T Consensus 178 ~R~PEPYKGKGIr--y~~E~I~rK~g 201 (212)
T 1nkw_E 178 VRKPDAYHGKGVR--FVGEQIALKAG 201 (212)
T ss_pred cCCCCCcCCCcEe--ECCeEEEEcCc
Confidence 9 999999997 47777777653
No 9
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=3e-59 Score=377.31 Aligned_cols=167 Identities=28% Similarity=0.419 Sum_probs=150.7
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeecc
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 84 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 84 (189)
++++||+||+||+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.+++|+++++++|||||+||||+|||+|||+
T Consensus 3 igk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~~~~-~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (177)
T 1rl6_A 3 VGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHP-DMTITVEG-NVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ----CEECCTTCEEEEETTEEEEEETTEEEEEECCT-TCEEEEET-TEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEEeC-CEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence 578999999999999999999999999999999988 77777788 8999999999999999999999999999999999
Q ss_pred ceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh---
Q psy7620 85 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS--- 161 (189)
Q Consensus 85 Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~--- 161 (189)
||+++|+++|+|||+. .+|+.|+|. ||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++
T Consensus 81 Gf~~~L~lvGvGyra~----~~G~~l~l~--LG~Shpv~~~iP~gi~v~v~-~~t~I~v~G~Dkq~Vgq~AA~Ir~~R~P 153 (177)
T 1rl6_A 81 GYEKALELVGVGYRAS----KQGKKLVLS--VGYSHPVEIEPEEGLEIEVP-SQTKIIVKGADKQRVGELAANIRAVRPP 153 (177)
T ss_dssp CEEEEEEEESTTCEEE----EETTEEEEE--SSSSSCEEECCCTTEEEEEE-ETTEEEEEESCHHHHHHHHHHHHTTSCC
T ss_pred CcEEEEEEEeeceEEE----ecCCEEEEE--ecCCccEEEeCCCCcEEEEC-CCCEEEEEeCCHHHHHHHHHHHhccCCC
Confidence 9999999999999854 458999995 99999999999999999998 4699999999999999999999999
Q ss_pred ccccCcceeeeeCcEEEeeee
Q psy7620 162 TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 162 ~~yKgKgir~f~dgiyv~~K~ 182 (189)
||||||||| -.|+++..|.
T Consensus 154 epYKGKGI~--y~~E~i~~K~ 172 (177)
T 1rl6_A 154 EPYKGKGIR--YEGELVRLKE 172 (177)
T ss_dssp CTTTCCEEE--ETTCCCCC--
T ss_pred CCcCCCcEe--ECCeEEEEcC
Confidence 999999997 4666666654
No 10
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=8.9e-59 Score=374.34 Aligned_cols=167 Identities=21% Similarity=0.362 Sum_probs=154.1
Q ss_pred eceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhheeeecc
Q psy7620 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLKGVTK 84 (189)
Q Consensus 5 ~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 84 (189)
++++||.||+||+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.+++|+++++++|||||+||||+|||+|||+
T Consensus 3 igk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~-~v~i~~~~-~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 80 (176)
T 3r8s_G 3 VAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLND-AVEVKHAD-NTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp TTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCS-SCEEEEET-TEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred ccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCC-CEEEEEeC-CEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence 478999999999999999999999999999999998 77887788 8999999999999999999999999999999999
Q ss_pred ceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh---
Q psy7620 85 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS--- 161 (189)
Q Consensus 85 Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~--- 161 (189)
||+++|+++|+||| ++.+|+.|.+ |||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++
T Consensus 81 Gf~~kL~lvgvgyr----a~~~g~~l~l--~LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~R~P 153 (176)
T 3r8s_G 81 GFTKKLQLVGVGYR----AAVKGNVINL--SLGFSHPVDHQLPAGITAECP-TQTEIVLKGADKQVIGQVAADLRAYRRP 153 (176)
T ss_dssp CEEECEEEESTTCE----EECSSSEEEE--ECSSSSCEEEECCTTCEEEEE-ETTEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEEEeeeeeE----EEeCCCEEEE--EecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhhccCCC
Confidence 99999999999998 4457898887 599999999999999999998 5799999999999999999999999
Q ss_pred ccccCcceeeeeCcEEEeeee
Q psy7620 162 TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 162 ~~yKgKgir~f~dgiyv~~K~ 182 (189)
||||||||| ..|++|..|.
T Consensus 154 epYKGKGI~--y~~E~i~~K~ 172 (176)
T 3r8s_G 154 EPYKGKGVR--YADEVVRTKE 172 (176)
T ss_dssp CSSSCCEEE--ESSCCCCCCC
T ss_pred CCccCCcee--ECCeEEEecc
Confidence 899999997 3556665553
No 11
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.3e-58 Score=382.92 Aligned_cols=170 Identities=20% Similarity=0.320 Sum_probs=156.2
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEE-EEecccEEEEEeccCchhhhhHHHhHHHHHhhhe
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDI-HMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNML 79 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~-~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI 79 (189)
|.+| +++||+||+||+|+++++.|+|+||+|+|+++|++ .+++ ..++ +.+.+++|+++++++|+|||+||||+|||
T Consensus 43 mSri-gk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~-~v~i~~~e~-~~i~v~~~~~~k~~~a~~Gt~rslI~NMI 119 (223)
T 3bbo_I 43 ESRI-GKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPR-EVELTKEES-GFLRVKKTVETRRANQMHGLFRTLTDNMV 119 (223)
T ss_dssp CCCC-CCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCS-SCEEEECSS-SCEEEECSSCCTTHHHHHHHHTTTTTHHH
T ss_pred cccc-cccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEEecC-CEEEEEcCCCcHHHHHHHHHHHHHhhcEE
Confidence 4454 78999999999999999999999999999999998 7777 6677 89999999999999999999999999999
Q ss_pred eeeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHh
Q psy7620 80 KGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQ 159 (189)
Q Consensus 80 ~GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir 159 (189)
+|||+||+++|+++|+|||+. .+|+.|+|. ||||||+.++||+||+++++ ++|+|+|+|+|||+|||+||+||
T Consensus 120 ~GVt~Gf~kkLelvGvGYra~----~~G~~L~L~--LG~SHpv~~~iP~GI~v~v~-~~t~Iii~GiDKq~Vgq~AA~IR 192 (223)
T 3bbo_I 120 VGVSKGFEKKLILVGVGYRAT----VDGKELVLN--LGFSHPVKMQIPDSLKVKVE-ENTRITVSGYDKSEIGQFAATVR 192 (223)
T ss_dssp HHTTTCEEECEECCSTTCCEE----ECSSEEEEC--SSCSSCEEEECCSSEEEECS-STTBCEEEESSSHHHHHHHHHTT
T ss_pred EeeccCcEEEEEEeeeceEEE----ecCCEEEEE--eeCCccEEEECCCCeEEEeC-CCCEEEEEeCCHHHHHHHHHHHh
Confidence 999999999999999999844 569999995 99999999999999999998 56999999999999999999999
Q ss_pred hh---ccccCcceeeeeCcEEEeeee
Q psy7620 160 QS---TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 160 ~~---~~yKgKgir~f~dgiyv~~K~ 182 (189)
++ ||||||||| ..|++|..|.
T Consensus 193 ~~R~PEPYKGKGI~--y~~E~I~rK~ 216 (223)
T 3bbo_I 193 KWRPPEPYKGKGVK--YSDEIVRRKE 216 (223)
T ss_dssp SSSCCCTTTCCSCE--ETTCCCCCCC
T ss_pred ccCCCCCcCCCcEe--ECCeEEEEec
Confidence 99 999999997 3666776664
No 12
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=8.7e-59 Score=376.68 Aligned_cols=170 Identities=21% Similarity=0.324 Sum_probs=152.7
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccEEEEEeccCchhhhhHHHhHHHHHhhhee
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~ 80 (189)
|.+| +++||+||+||+|+++++.|+|+||+|+|+++|++ .+++..++ +.+.+++|+++++++|+|||+||||+|||+
T Consensus 1 mSri-gk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~-~v~i~~~~-~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~ 77 (185)
T 2zjr_E 1 MSRI-GKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNT-ELTVRQDG-DQLLVERPSDAQKHRALHGLTRTLVANAVK 77 (185)
T ss_dssp -----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCS-SSCCBCCS-SSBBCCCSSCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCcc-cccceecCCCCEEEEeCCEEEEECCCeEEEEEcCC-CEEEEEeC-CEEEEECCCCCHHHHHHHHHHHHHhhcEEe
Confidence 4443 66799999999999999999999999999999988 66666677 889999999999999999999999999999
Q ss_pred eeccceeeeeEEeeeeeeeeEEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEEccHhHHHHHHHHHhh
Q psy7620 81 GVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQ 160 (189)
Q Consensus 81 GVt~Gf~~~L~lvGvgy~~~~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~ 160 (189)
|||+||+++|+++|+|||+. .+|+.|+|. ||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||+
T Consensus 78 GVt~Gf~kkL~lvGvGYra~----~~G~~l~l~--LG~Shpv~~~iP~gI~v~v~-~~t~I~l~G~DKq~Vgq~AA~Ir~ 150 (185)
T 2zjr_E 78 GVSDGYTINLELRGVGFRAK----LTGKALEMN--IGYSHPVIIEPPAGVTFAVP-EPTRIDVSGIDKQLVGQVAANVRK 150 (185)
T ss_dssp HHHHCEEEEEECBSTTCCCC----CBTTBCBCC--SSCSSCCBCCCCTTEEEECS-STTEEEEEESSHHHHHHHHHHHHH
T ss_pred eeccCcEEEEEEeeeccEEE----EcCCEEEEE--eeCCccEEEECCCCeEEEEC-CCCEEEEEecCHHHHHHHHHHHhc
Confidence 99999999999999999954 468999995 99999999999999999998 569999999999999999999999
Q ss_pred h---ccccCcceeeeeCcEEEeeee
Q psy7620 161 S---TTVKNKDIRKFLDGLYVSEKT 182 (189)
Q Consensus 161 ~---~~yKgKgir~f~dgiyv~~K~ 182 (189)
+ ||||||||| ..|++|..|.
T Consensus 151 ~R~PepYKGKGI~--y~~E~i~~K~ 173 (185)
T 2zjr_E 151 VRKPDAYHGKGVR--FVGEQIALKA 173 (185)
T ss_dssp HTCCCTTTCCBCC--CSSCCCCCCC
T ss_pred cCCCCCcCCCcEe--ECCeEEEEcC
Confidence 9 999999997 4666666654
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.96 E-value=7.1e-30 Score=188.47 Aligned_cols=88 Identities=52% Similarity=0.948 Sum_probs=82.0
Q ss_pred CceeeceeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEcccccEEEEEecccE---EEEEeccCchhhhhHHHhHHHHHhh
Q psy7620 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRV---LKVEKWFGTKKEIAAVRTVCSHISN 77 (189)
Q Consensus 1 m~~i~~~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~~~i~~~~~~~~~---l~v~~~~~~k~~~a~~gt~rsli~N 77 (189)
|++|..++||+||+||+|+++++.|+|+||+|+|+++|+|..|++..++ +. +.+++|+++|+++|+|||+||||+|
T Consensus 8 Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~-~~~~~i~v~~~~~~k~~ra~~Gt~RslI~N 86 (100)
T 2cql_A 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLG-KKKKRLRVDKWWGNRKELATVRTICSHVQN 86 (100)
T ss_dssp CCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEEC-SSSCEEEEECCSSSTHHHHHHHHHHHHHHH
T ss_pred cccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcC-CceeEEEEEccCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999995467777676 55 9999999999999999999999999
Q ss_pred heeeeccceeee
Q psy7620 78 MLKGVTKGFLYK 89 (189)
Q Consensus 78 mI~GVt~Gf~~~ 89 (189)
||+|||+||+|.
T Consensus 87 MI~GVt~Gf~y~ 98 (100)
T 2cql_A 87 MIKGVTLGSGPS 98 (100)
T ss_dssp HHHHHHTSCCSC
T ss_pred hhEeecCCEEEc
Confidence 999999999985
No 14
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}
Probab=84.13 E-value=7.4 Score=33.13 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=34.3
Q ss_pred CCCeEEEEeCCEEEEEeCC----------eEEEEE--ccc-c---cEEEEEe-cccEEEEEecc
Q psy7620 13 PRGLQCFVKARTVTVKGPR----------GTLKRD--FKH-L---AIDIHMV-NKRVLKVEKWF 59 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~----------G~l~~~--l~~-~---~i~~~~~-~~~~l~v~~~~ 59 (189)
|+.++|++.++.|+|+|.+ |+..+. ||. + .++.... + +.|.|+...
T Consensus 125 ~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~n-GVL~I~lPK 187 (314)
T 2bol_A 125 AEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTD-DVLVIEAPV 187 (314)
T ss_dssp TTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSS-SEEEEEEEB
T ss_pred hHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCC-CEEEEEEec
Confidence 5899999999999999986 556665 443 2 3566677 6 888887654
No 15
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=75.21 E-value=2.1 Score=30.51 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=18.4
Q ss_pred EEeCCCCeEEEecCCCCEEEEEEcc
Q psy7620 123 RVKMAPGVKVSNSKQKDELIIEGND 147 (189)
Q Consensus 123 ~~~IP~gi~v~~~~~~t~i~i~G~D 147 (189)
.++||+||+|++. ...|+++|.-
T Consensus 16 pI~IP~gV~V~i~--~~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLK--GRTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEE--TTEEEEEETT
T ss_pred cEEcCCCCEEEEe--CCEEEEECCC
Confidence 4578999999994 5789999875
No 16
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=63.99 E-value=19 Score=24.13 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=32.0
Q ss_pred CCCeEEEEeCCEEEEEeCC-----------eEEEEEc--cc-c---cEEEEEe-cccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPR-----------GTLKRDF--KH-L---AIDIHMV-NKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~-----------G~l~~~l--~~-~---~i~~~~~-~~~~l~v~~~ 58 (189)
|+.++|++.++.|+|+|.+ |+..+.| |. + .++.... + +.|.|+.+
T Consensus 20 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~-GvL~I~lP 82 (85)
T 3q9p_A 20 PDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPE-GTLTVEAP 82 (85)
T ss_dssp CSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTT-SEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCC-CEEEEEEE
Confidence 6899999999999999964 5565554 43 3 3556665 6 77777654
No 17
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.07 E-value=7.6 Score=30.63 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=12.6
Q ss_pred eeEeCCCeEEEEeCCEEEEEe
Q psy7620 9 TVKIPRGLQCFVKARTVTVKG 29 (189)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~v~G 29 (189)
.+++|+||+++..++.|.++|
T Consensus 121 ~~~ip~gv~v~v~~~~Iil~G 141 (184)
T 3j21_F 121 KAKILPGVTVKVRGQEIIVEG 141 (184)
T ss_dssp EEECCTTEEEEEETTEEEEEE
T ss_pred EEECCCCeEEEecCCEEEEEE
Confidence 456677777776544444444
No 18
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=57.79 E-value=9.1 Score=30.05 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=14.5
Q ss_pred eeEeCCCeEEEEeCCEEEEEe
Q psy7620 9 TVKIPRGLQCFVKARTVTVKG 29 (189)
Q Consensus 9 ~I~IP~~V~v~i~~~~v~v~G 29 (189)
.+++|+||++++.++.|+++|
T Consensus 116 ~~~ip~gi~v~v~~~~I~v~G 136 (178)
T 1vq8_E 116 RTTIHGDTDVEIDGEELTVSG 136 (178)
T ss_dssp EEECCTTCEEEEETTEEEEEE
T ss_pred EEeCCCCeEEEEeCCEEEEEE
Confidence 567788888887655555555
No 19
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=57.13 E-value=23 Score=24.43 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=32.4
Q ss_pred CCCeEEEEeCCEEEEEeCC-------------eEEEEEc--cc-c---cEEEEEecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPR-------------GTLKRDF--KH-L---AIDIHMVNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~-------------G~l~~~l--~~-~---~i~~~~~~~~~l~v~~~ 58 (189)
|+.++|+++++.|+|+|.+ |...+.| |. + .++...++ +.|.|...
T Consensus 29 ~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~-GvL~I~lp 92 (102)
T 4fei_A 29 AGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAG-GVLTVRFE 92 (102)
T ss_dssp GGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEET-TEEEEEEE
T ss_pred hHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEEC-CEEEEEEE
Confidence 4789999999999999954 6666654 43 2 35556677 88888754
No 20
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=57.01 E-value=36 Score=23.04 Aligned_cols=45 Identities=20% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCeEEEEeCCEEEEEeCC------------------eEEEEE--ccc-c---cEEEEEecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPR------------------GTLKRD--FKH-L---AIDIHMVNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~------------------G~l~~~--l~~-~---~i~~~~~~~~~l~v~~~ 58 (189)
|++++|+++++.|+|+|.+ |...+. ||. + .++...++ +.|.|...
T Consensus 27 ~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~~~-GvL~I~~p 95 (100)
T 3gla_A 27 PSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAGRN-GVLEIRIP 95 (100)
T ss_dssp GGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEEET-TEEEEEEE
T ss_pred HHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEEeC-CEEEEEEe
Confidence 4789999999999999843 455554 443 2 35556666 88887654
No 21
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Probab=55.32 E-value=25 Score=23.71 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCEEEEEeCCeE-----------E--EEEccc-c---cEEEEE-ecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPRGT-----------L--KRDFKH-L---AIDIHM-VNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G~-----------l--~~~l~~-~---~i~~~~-~~~~~l~v~~~ 58 (189)
|+.++|++.++.|+|+|.+-. . ++.||. + .++... ++ +.|.|...
T Consensus 19 ~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~-GvL~I~~p 81 (90)
T 2y1y_A 19 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSD-GVLTVNGP 81 (90)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTT-SEEEEEEC
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCC-CEEEEEEE
Confidence 478999999999999997532 2 223443 2 245566 56 77777654
No 22
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}
Probab=54.58 E-value=24 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCeEEEEeCCEEEEEeCCeE-----------E--EEEccc-c---cEEEEE-ecccEEEEEec
Q psy7620 13 PRGLQCFVKARTVTVKGPRGT-----------L--KRDFKH-L---AIDIHM-VNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G~-----------l--~~~l~~-~---~i~~~~-~~~~~l~v~~~ 58 (189)
|+.++|++.++.|+|+|.+.. . ++.||. + .++... ++ +.|.|+.+
T Consensus 24 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~n-GvL~I~lP 86 (101)
T 2wj5_A 24 PEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPE-GVLSIQAT 86 (101)
T ss_dssp GGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTT-SEEEEEEC
T ss_pred HHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCC-CEEEEEEE
Confidence 478999999999999998743 2 334553 2 255566 56 88888654
No 23
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=54.31 E-value=21 Score=26.74 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=32.4
Q ss_pred CCCeEEEEeCCEEEEEeC-------------------CeEEEEE--ccc-c---cEEEEEecccEEEEEecc
Q psy7620 13 PRGLQCFVKARTVTVKGP-------------------RGTLKRD--FKH-L---AIDIHMVNKRVLKVEKWF 59 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp-------------------~G~l~~~--l~~-~---~i~~~~~~~~~l~v~~~~ 59 (189)
|+.++|+++++.|+|+|. -|...+. ||. + .++...++ +.|.|....
T Consensus 79 ~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~~n-GvL~I~lpK 149 (161)
T 4eld_A 79 KEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFEN-GVLSVILPK 149 (161)
T ss_dssp GGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEEET-TEEEEEEEB
T ss_pred hHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEEEC-CEEEEEEEc
Confidence 479999999999999984 3555554 443 2 25556677 888887653
No 24
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=52.66 E-value=11 Score=29.58 Aligned_cols=27 Identities=11% Similarity=0.104 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhhh-----c------cccCcceeeeeCc
Q psy7620 149 ENVSRSAALIQQS-----T------TVKNKDIRKFLDG 175 (189)
Q Consensus 149 q~Vgq~AA~Ir~~-----~------~yKgKgir~f~dg 175 (189)
...|.+.|.|.+. + ..-|-|-|.-++|
T Consensus 62 a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G 99 (177)
T 1rl6_A 62 ALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQG 99 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEET
T ss_pred HHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecC
Confidence 5567777777765 1 3335565655555
No 25
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=51.39 E-value=14 Score=29.30 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=17.8
Q ss_pred CCeEEEecCCCCEEEEEEcc-----HhHHHHHHHHHhhh
Q psy7620 128 PGVKVSNSKQKDELIIEGND-----IENVSRSAALIQQS 161 (189)
Q Consensus 128 ~gi~v~~~~~~t~i~i~G~D-----Kq~Vgq~AA~Ir~~ 161 (189)
..+++...++++.+.++-.+ +...|.++|.|.+.
T Consensus 41 ~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~Nm 79 (190)
T 3iz5_F 41 LNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNL 79 (190)
T ss_dssp TTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 34555552123555555332 23567777777764
No 26
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=51.18 E-value=13 Score=29.49 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=12.6
Q ss_pred eeEeCCCeEEEEeC---CEEEEEe
Q psy7620 9 TVKIPRGLQCFVKA---RTVTVKG 29 (189)
Q Consensus 9 ~I~IP~~V~v~i~~---~~v~v~G 29 (189)
.+++|+||+++..+ ..|.++|
T Consensus 125 ~~~ip~Gv~v~v~~~~kteIil~G 148 (191)
T 3u5e_H 125 NVPVRDGVTIEFSTNVKDEIVLSG 148 (191)
T ss_dssp EEECCTTEEEEECTTSTTEEEEEE
T ss_pred EEECCCCEEEEECCCCCCEEEEEE
Confidence 45667777777655 3455554
No 27
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=49.72 E-value=9.1 Score=30.35 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=8.3
Q ss_pred hHHHHHHHHHhhh
Q psy7620 149 ENVSRSAALIQQS 161 (189)
Q Consensus 149 q~Vgq~AA~Ir~~ 161 (189)
...|.++|.|.+.
T Consensus 68 a~~Gt~rsli~Nm 80 (192)
T 2zkr_e 68 ATVRTICSHVQNM 80 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCE
Confidence 3566777777664
No 28
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=49.36 E-value=11 Score=29.49 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=9.2
Q ss_pred hHHHHHHHHHhhh
Q psy7620 149 ENVSRSAALIQQS 161 (189)
Q Consensus 149 q~Vgq~AA~Ir~~ 161 (189)
..+|.++|.|.+.
T Consensus 63 a~~gt~rsli~Nm 75 (180)
T 3v2d_H 63 SLHGLTRTLIANA 75 (180)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3567788888775
No 29
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A
Probab=44.42 E-value=32 Score=26.51 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCeEEEEeCCEEEEEeCCeEE-------------EEEccc-c---cEEEEE-ecccEEEEEecc
Q psy7620 13 PRGLQCFVKARTVTVKGPRGTL-------------KRDFKH-L---AIDIHM-VNKRVLKVEKWF 59 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~G~l-------------~~~l~~-~---~i~~~~-~~~~~l~v~~~~ 59 (189)
|+.++|++.++.|+|+|.+..- ++.||. + .|+... ++ +.|.|+...
T Consensus 86 ~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~d-GvL~I~lPK 149 (175)
T 2klr_A 86 PEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSD-GVLTVNGPR 149 (175)
T ss_dssp GGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTT-SCEEEEEEC
T ss_pred hHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCC-CEEEEEEEC
Confidence 5789999999999999976431 223443 2 355666 56 788886543
No 30
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=43.16 E-value=16 Score=28.88 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=8.2
Q ss_pred eeEeCCCeEEEEeC
Q psy7620 9 TVKIPRGLQCFVKA 22 (189)
Q Consensus 9 ~I~IP~~V~v~i~~ 22 (189)
.+++|+||+++..+
T Consensus 123 ~~~ip~gv~v~v~~ 136 (188)
T 4a17_E 123 RIQALPGVKISRKD 136 (188)
T ss_dssp EEECCTTCEEECCT
T ss_pred EEECCCCeEEEECC
Confidence 34566666666554
No 31
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Probab=41.82 E-value=48 Score=23.49 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=30.9
Q ss_pred CCCeEEEEeC-CEEEEEeCCe--------------EEE--EEccc-c---cE-EEEEecccEEEEEec
Q psy7620 13 PRGLQCFVKA-RTVTVKGPRG--------------TLK--RDFKH-L---AI-DIHMVNKRVLKVEKW 58 (189)
Q Consensus 13 P~~V~v~i~~-~~v~v~Gp~G--------------~l~--~~l~~-~---~i-~~~~~~~~~l~v~~~ 58 (189)
|+.++|++.+ +.|+|+|.+- ... +.||. + .+ +...++ +.|.|..+
T Consensus 47 ~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~-GvL~I~lP 113 (123)
T 3aab_A 47 KEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN-GVLTIRIP 113 (123)
T ss_dssp GGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET-TEEEEEEE
T ss_pred HHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC-CEEEEEEE
Confidence 4689999999 9999999852 233 34553 1 35 556666 88888654
No 32
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=40.80 E-value=14 Score=29.14 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.7
Q ss_pred eeEeCCCeEEEEeCC-EEEEEeC
Q psy7620 9 TVKIPRGLQCFVKAR-TVTVKGP 30 (189)
Q Consensus 9 ~I~IP~~V~v~i~~~-~v~v~Gp 30 (189)
.+++|+||++++.++ .|+++|.
T Consensus 114 ~~~iP~gI~v~v~~~t~I~l~G~ 136 (185)
T 2zjr_E 114 IIEPPAGVTFAVPEPTRIDVSGI 136 (185)
T ss_dssp BCCCCTTEEEECSSTTEEEEEES
T ss_pred EEECCCCeEEEECCCCEEEEEec
Confidence 567899998887654 6666664
No 33
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=40.61 E-value=49 Score=23.08 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.3
Q ss_pred CeEEEecCCCCEEEEEEccHhHHHHHHHHHhhh
Q psy7620 129 GVKVSNSKQKDELIIEGNDIENVSRSAALIQQS 161 (189)
Q Consensus 129 gi~v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~ 161 (189)
++.+..|+..+.|+|+|. ++.|-...+.|+..
T Consensus 58 ~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEGEDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSSSCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCEEEEECC-HHHHHHHHHHHHHH
Confidence 455555533578999999 99999988888775
No 34
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=40.28 E-value=1.1e+02 Score=24.47 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=46.8
Q ss_pred EEEccCCcEEEEecccCceeEEEEeCCCCeEEEecCCCCEEEEEE--cc---HhHHHHHHHHHhhh-----c------cc
Q psy7620 101 CVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG--ND---IENVSRSAALIQQS-----T------TV 164 (189)
Q Consensus 101 ~~~~~~g~~L~lkn~LG~Sh~i~~~IP~gi~v~~~~~~t~i~i~G--~D---Kq~Vgq~AA~Ir~~-----~------~y 164 (189)
+.+..+++.+.+++-+| .....+|+.+++... ++.|.++- .+ +...|.++|.|.+. + ..
T Consensus 42 V~V~i~~~~VtVKGPkG---~L~~~~~~~v~i~~e--~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~GVt~Gf~kkLel 116 (212)
T 1nkw_E 42 VTVNAQDGVFKVKGPKG---ELTVPYNTELTVRQD--GDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLEL 116 (212)
T ss_pred cEEEEeCCEEEEECCCE---EEEEECCCCeEEEEE--CCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEeeccCeEEEEEE
Confidence 34455678888975555 455666889999885 46788862 23 35678888888875 1 33
Q ss_pred cCcceeeeeCcEE
Q psy7620 165 KNKDIRKFLDGLY 177 (189)
Q Consensus 165 KgKgir~f~dgiy 177 (189)
-|-|-|.-++|-.
T Consensus 117 vGvGYra~~~G~~ 129 (212)
T 1nkw_E 117 RGVGFRAKLTGKA 129 (212)
T ss_pred eeeeeEEEcCCCE
Confidence 4566666555533
No 35
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=36.59 E-value=26 Score=27.27 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=12.2
Q ss_pred eeEeCCCeEEEEeC-CEEEEEe
Q psy7620 9 TVKIPRGLQCFVKA-RTVTVKG 29 (189)
Q Consensus 9 ~I~IP~~V~v~i~~-~~v~v~G 29 (189)
.+++|+||+|++.+ ..|+++|
T Consensus 113 ~~~ip~gv~v~v~~~t~Iil~G 134 (176)
T 3r8s_G 113 DHQLPAGITAECPTQTEIVLKG 134 (176)
T ss_dssp EEECCTTCEEEEEETTEEEEEE
T ss_pred EEECCCCeEEEECCCCEEEEEE
Confidence 45677777777643 3444444
No 36
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=35.16 E-value=16 Score=29.75 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=14.5
Q ss_pred eeEeCCCeEEEEeCC-EEEEEeC
Q psy7620 9 TVKIPRGLQCFVKAR-TVTVKGP 30 (189)
Q Consensus 9 ~I~IP~~V~v~i~~~-~v~v~Gp 30 (189)
.+++|+||++++.++ .|+++|.
T Consensus 157 ~~~iP~GI~v~v~~~t~Iii~Gi 179 (223)
T 3bbo_I 157 KMQIPDSLKVKVEENTRITVSGY 179 (223)
T ss_dssp EEECCSSEEEECSSTTBCEEEES
T ss_pred EEECCCCeEEEeCCCCEEEEEeC
Confidence 567788888877643 5666653
No 37
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Probab=29.42 E-value=30 Score=24.15 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.5
Q ss_pred CCCeEEEEeCCEEEEEeCC
Q psy7620 13 PRGLQCFVKARTVTVKGPR 31 (189)
Q Consensus 13 P~~V~v~i~~~~v~v~Gp~ 31 (189)
|+.++|+++++.|+|+|..
T Consensus 25 ~edi~V~v~~~~L~I~g~~ 43 (106)
T 3l1e_A 25 PEDLTVKVQEDFVEIHGKH 43 (106)
T ss_dssp GGGEEEEEETTEEEEEEEE
T ss_pred hHHEEEEEECCEEEEEEEE
Confidence 5789999999999999953
No 38
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=27.54 E-value=21 Score=23.55 Aligned_cols=26 Identities=15% Similarity=0.517 Sum_probs=21.2
Q ss_pred CCeEEEEeCCEEEEEeCCeEEEEEcc
Q psy7620 14 RGLQCFVKARTVTVKGPRGTLKRDFK 39 (189)
Q Consensus 14 ~~V~v~i~~~~v~v~Gp~G~l~~~l~ 39 (189)
.||++.++++.+.++.|+|.++-.+.
T Consensus 17 ~gi~l~~eg~kLr~~ap~g~l~~~l~ 42 (78)
T 2jug_A 17 LGVRLWVEGERLRFQAPPGVMTPELQ 42 (78)
T ss_dssp HTCEEEEETTEEEEECCTTTTCHHHH
T ss_pred cCCEEEEECCEeeeecCccccCHHHH
Confidence 47888999999999999998875443
No 39
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Probab=27.06 E-value=1.2e+02 Score=22.29 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCeEEEE-eCCEEEEEeCC------------------eEEEE--Eccc-c---cEEEEEecccEEEEEecc
Q psy7620 13 PRGLQCFV-KARTVTVKGPR------------------GTLKR--DFKH-L---AIDIHMVNKRVLKVEKWF 59 (189)
Q Consensus 13 P~~V~v~i-~~~~v~v~Gp~------------------G~l~~--~l~~-~---~i~~~~~~~~~l~v~~~~ 59 (189)
|+.++|++ +++.|+|+|.+ |...+ .||. + .++...++ +.|.|....
T Consensus 66 kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~n-GvL~I~lPK 136 (151)
T 1gme_A 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLEN-GVLTVTVPK 136 (151)
T ss_dssp GGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEEEET-TEEEEEEEC
T ss_pred hHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEEEEEC-CEEEEEEEc
Confidence 46899999 57899999954 34444 4443 2 35556677 888886543
No 40
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=26.46 E-value=36 Score=24.15 Aligned_cols=28 Identities=32% Similarity=0.312 Sum_probs=20.8
Q ss_pred ccHhHHHHHHHHHhhhccccCcceeeeeC
Q psy7620 146 NDIENVSRSAALIQQSTTVKNKDIRKFLD 174 (189)
Q Consensus 146 ~DKq~Vgq~AA~Ir~~~~yKgKgir~f~d 174 (189)
.|||.+=+.|.. ++.-.|||+-||.+.|
T Consensus 73 ~~KErILkaar~-k~~vtykg~pirlsaD 100 (100)
T 2w7a_A 73 EMKEKMLRAARE-KGRVTLKGKPIRLTVD 100 (100)
T ss_dssp HHHHHHHHHHHH-HCCEEETTEEEEEEEC
T ss_pred ccHHHHHHHHHH-hCceeeCCcceeecCC
Confidence 468888875544 3335799999998887
No 41
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.25 E-value=1.2e+02 Score=20.89 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=27.3
Q ss_pred CeE-EEecCCCCEEEEEEccHhHHHHHHHHHhhhc
Q psy7620 129 GVK-VSNSKQKDELIIEGNDIENVSRSAALIQQST 162 (189)
Q Consensus 129 gi~-v~~~~~~t~i~i~G~DKq~Vgq~AA~Ir~~~ 162 (189)
|++ +.+.+....+.|.|.|.+.+-+.-+.|...|
T Consensus 45 Gv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 45 GVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp TEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 787 8886334789999999999988888887773
No 42
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.63 E-value=67 Score=22.56 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.7
Q ss_pred CEEEEEEccHhHHHHHHHHHhhhccccC
Q psy7620 139 DELIIEGNDIENVSRSAALIQQSTTVKN 166 (189)
Q Consensus 139 t~i~i~G~DKq~Vgq~AA~Ir~~~~yKg 166 (189)
-+|.|+|-|...|-++|+.|.....++|
T Consensus 4 irI~LkS~d~~~Ld~~~~~i~~~ak~~g 31 (102)
T 3j20_L 4 ARIKIASTNVRSLDEVANQIKQIAERTG 31 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSSS
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999999998754444
No 43
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=21.53 E-value=20 Score=24.41 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=18.0
Q ss_pred EccHhHHHHHHHHHhhhc-cccCcce
Q psy7620 145 GNDIENVSRSAALIQQST-TVKNKDI 169 (189)
Q Consensus 145 G~DKq~Vgq~AA~Ir~~~-~yKgKgi 169 (189)
+++..+|+|.||++.+|| .=...|+
T Consensus 30 ~i~RikVSqaaadL~~yc~~~~~~Dp 55 (77)
T 3v5w_G 30 NIDRIKVSKAAADLMAYCEAHAKEDP 55 (77)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSGGGCT
T ss_pred ccchhhHHHHHHHHHHHHHhcCCCCC
Confidence 456778999999999993 3334444
No 44
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=21.24 E-value=82 Score=21.53 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=22.4
Q ss_pred CCEEEEEEccHhHHHHHHHHHhhhc
Q psy7620 138 KDELIIEGNDIENVSRSAALIQQST 162 (189)
Q Consensus 138 ~t~i~i~G~DKq~Vgq~AA~Ir~~~ 162 (189)
.-+|.|++-|...+-++|++|...-
T Consensus 10 kirI~L~S~d~~~Ld~~~~~Iv~~a 34 (87)
T 3d3c_J 10 RIRIRLKAFDHRLIDQATAEIVETA 34 (87)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHH
Confidence 4679999999999999999998873
No 45
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=21.20 E-value=1.2e+02 Score=26.93 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=28.2
Q ss_pred eeeeEeCCCeEEEEeCCEEEEEeCCeEEEEEccc
Q psy7620 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKH 40 (189)
Q Consensus 7 ~~~I~IP~~V~v~i~~~~v~v~Gp~G~l~~~l~~ 40 (189)
...|.+|+|-+|.-......+.-|-|++.+.+..
T Consensus 428 ~~~i~~P~g~~v~~~p~~~~i~~~~g~~~~~~~~ 461 (506)
T 3kd4_A 428 TYTVTPAEGMKLQTSTQEQVISKPFGKVTRTITP 461 (506)
T ss_dssp EEEEEECTTCEECSCCSCEEEEETTEEEEEEEEE
T ss_pred EEEEECCCCCeeecCCcCeeecCCcEEEEEEEEe
Confidence 3578999999998766677789999999998774
No 46
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=20.29 E-value=1.5e+02 Score=19.38 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.6
Q ss_pred EEEEEccHhHHHHHHHHHhhh
Q psy7620 141 LIIEGNDIENVSRSAALIQQS 161 (189)
Q Consensus 141 i~i~G~DKq~Vgq~AA~Ir~~ 161 (189)
+.|+| |.+.+-.....|+..
T Consensus 63 v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 63 LRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEe-CHHHHHHHHHHHHHH
Confidence 99999 999998877777654
No 47
>3r8n_J 30S ribosomal protein S10; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_J 3fih_J* 3j18_J* 2wwl_J 3oar_J 3oaq_J 3ofb_J 3ofa_J 3ofp_J 3ofx_J 3ofy_J 3ofo_J 3r8o_J 4a2i_J 4gd1_J 4gd2_J 3i1m_J 1p6g_J 1p87_J* 1vs7_J* ...
Probab=20.03 E-value=52 Score=22.83 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=21.6
Q ss_pred EEEEEEccHhHHHHHHHHHhhhccc
Q psy7620 140 ELIIEGNDIENVSRSAALIQQSTTV 164 (189)
Q Consensus 140 ~i~i~G~DKq~Vgq~AA~Ir~~~~y 164 (189)
+|.|+|-|...+-++|+.|......
T Consensus 3 rI~L~s~d~~~Ld~~~~~i~~~ak~ 27 (98)
T 3r8n_J 3 RIRLKAFDHRLIDQATAEIVETAKR 27 (98)
T ss_dssp CCEEEBSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999987433
Done!