RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7620
(189 letters)
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 251 bits (644), Expect = 1e-86
Identities = 89/190 (46%), Positives = 126/190 (66%), Gaps = 3/190 (1%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
M+ I + Q +++P G+ +K+R V V GPRGTL ++ KH+ + VN +++KV G
Sbjct: 1 MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG 60
Query: 61 TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSEN--NTLLEIRNFLGE 118
+K +AA+RTV S + NM+ GVTKG+ YKMR YAHFPIN E +E+RNFLG+
Sbjct: 61 GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD 120
Query: 119 KYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY 177
K IR V + GV + S KDE+++ GN +E+VS++AA +QQ V+NKDIRKFLDG+Y
Sbjct: 121 KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY 180
Query: 178 VSEKTTVVTD 187
VS K + D
Sbjct: 181 VSHKGFITED 190
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 248 bits (635), Expect = 3e-85
Identities = 81/188 (43%), Positives = 129/188 (68%), Gaps = 1/188 (0%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG 60
MR +++ V IP + K R V VKGP GT+KR F++ ++DI +K++ W
Sbjct: 1 MRHLLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQA 60
Query: 61 TKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKY 120
++KE A ++++ S I NM++GVT+G+ +KM+ A+AHFPI +++ + +EI++FLGEK
Sbjct: 61 SRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKR 120
Query: 121 IRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVS 179
IRR++ PGVK+S ++K+ L ++G D+ NVS++ ALI QS VK KDIR+FLDG+YVS
Sbjct: 121 IRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLDGIYVS 180
Query: 180 EKTTVVTD 187
+K + +
Sbjct: 181 DKRLAMNE 188
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 244 bits (624), Expect = 1e-83
Identities = 106/190 (55%), Positives = 143/190 (75%), Gaps = 2/190 (1%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMV-NKRVLKVEKWF 59
M+ I++++T++IP G+ V A+ VTV+GPRG L R+FKHL +D ++ R L+V+ WF
Sbjct: 1 MKTILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 60 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 119
GT++ +AA+RT SH+ N++ GVTKG+ YKMR YAHFPIN + +NT +EIRNFLGEK
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 120 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYV 178
+R+V M GV + S+ KDEL+++GNDIE VSRSAALI Q VKNKDIRKFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180
Query: 179 SEKTTVVTDA 188
S+K T+ DA
Sbjct: 181 SDKGTITEDA 190
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 241 bits (616), Expect = 3e-82
Identities = 125/190 (65%), Positives = 153/190 (80%), Gaps = 3/190 (1%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNK--RVLKVEKW 58
M+ I+SNQTV IP + +K RTV VKGPRGTL+RDF H+ +++ ++ K + L+V+KW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 59 FGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGE 118
+G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 119 KYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY 177
KYIRRV+M PGV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 178 VSEKTTVVTD 187
VSEK TV
Sbjct: 181 VSEKGTVQQA 190
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 222 bits (569), Expect = 3e-75
Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 5/173 (2%)
Query: 10 VKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVR 69
++IP + +TV+G G++ R + ID+ V+ + +E K ++ +
Sbjct: 6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS-VDGDTVVIESDEDNAKTMSTIG 64
Query: 70 TVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPG 129
T SHI NM GVT+G+ Y M Y+HFP+ + + I NFLGEK RR +
Sbjct: 65 TFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGD 122
Query: 130 VKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 182
V +EL + G DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 123 TDV--EIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP 173
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha
and beta (A+B), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.141.1.1
Length = 100
Score = 112 bits (283), Expect = 4e-33
Identities = 47/88 (53%), Positives = 67/88 (76%), Gaps = 2/88 (2%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNK--RVLKVEKW 58
M+ I+SNQTV IP + +K RTV VKGPRGTL+RDF H+ +++ ++ K + L+V+KW
Sbjct: 8 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 67
Query: 59 FGTKKEIAAVRTVCSHISNMLKGVTKGF 86
+G +KE+A VRT+CSH+ NM+KGVT G
Sbjct: 68 WGNRKELATVRTICSHVQNMIKGVTLGS 95
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 54.6 bits (132), Expect = 1e-09
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKE 64
+ Q + +P + ++ + + VKGP G L + +++ L+V+K T++
Sbjct: 46 IGKQPIAVPSNVTIALEGQDLKVKGPLGELALTY-PREVELTKEESGFLRVKKTVETRRA 104
Query: 65 IAAVRTVCSHISNMLKGVTKGF 86
+ NM+ GV+KGF
Sbjct: 105 NQMHGLFRTLTDNMVVGVSKGF 126
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G*
2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G*
2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 52.9 bits (128), Expect = 3e-09
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKE 64
V+ V +P G+ + + +T+KG G L R + A+++ + L G
Sbjct: 3 VAKAPVVVPAGVDVKINGQVITIKGKNGELTRTL-NDAVEVKHADN-TLTFGPRDGYADG 60
Query: 65 IAAVRTVCSHISNMLKGVTKGF 86
A T + +++M+ GVT+GF
Sbjct: 61 WAQAGTARALLNSMVIGVTEGF 82
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 51.3 bits (124), Expect = 1e-08
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKE 64
V + ++IP G+ V TVTVKGP+G L R F H + I + V+ V + K
Sbjct: 3 VGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTF-HPDMTITVEGN-VITVTRPSDEKHH 60
Query: 65 IAAVRTVCSHISNMLKGVTKGF 86
A T S ++NM++GV+KG+
Sbjct: 61 RALHGTTRSLLANMVEGVSKGY 82
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 50.3 bits (121), Expect = 3e-08
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIA 66
Q + +P G+ + VKGP+G L + + + + L VE+ +K A
Sbjct: 33 KQPIAVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGD-QLLVERPSDAQKHRA 90
Query: 67 AVRTVCSHISNMLKGVTKGF 86
+ ++N +KGV+ G+
Sbjct: 91 LHGLTRTLVANAVKGVSDGY 110
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 49.8 bits (120), Expect = 4e-08
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIA 66
+ +P+G+ V V VKGP+G L+ + + + V++VE+ ++ +
Sbjct: 6 RLPIPVPKGVSVEVAPGRVKVKGPKGELEVPV-SPEMRVVVEEG-VVRVERPSDERRHKS 63
Query: 67 AVRTVCSHISNMLKGVTKGF 86
+ I+N +KGV++G+
Sbjct: 64 LHGLTRTLIANAVKGVSEGY 83
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 49.8 bits (120), Expect = 4e-08
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIA 66
Q + +P G+ + VKGP+G L + + + + L VE+ +K A
Sbjct: 6 KQPIAVPSGVTVNAQDGVFKVKGPKGELTVPY-NTELTVRQDGD-QLLVERPSDAQKHRA 63
Query: 67 AVRTVCSHISNMLKGVTKGF 86
+ ++N +KGV+ G+
Sbjct: 64 LHGLTRTLVANAVKGVSDGY 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 3e-05
Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 69/212 (32%)
Query: 10 VKIPRGLQCFV-------KARTVTVK-GPRGTLKRDFKHLAIDIHMV------------- 48
IP L + V K +++ K I I +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 49 -NKRVL----KVEKWFGTKKEIAAVRT-VCSHISNMLKGVTKG-----F--LY------- 88
++ ++ + + + SHI + LK + F ++
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 89 -KMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGND 147
K+R + N S NTL +++ + + YI N + + L+ N
Sbjct: 505 QKIR--HDSTAWNASGSILNTLQQLKFY--KPYICD----------NDPKYERLV---NA 547
Query: 148 IEN----------VSRSAALIQQSTTVKNKDI 169
I + S+ L++ + +++ I
Sbjct: 548 ILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Score = 39.5 bits (91), Expect = 4e-04
Identities = 34/179 (18%), Positives = 54/179 (30%), Gaps = 43/179 (24%)
Query: 37 DFKHLAIDIHMVNKRVLKV-EKWFGTKKEIAAVRTVCSHISNMLKGVTKG----FLYKMR 91
DF+ K +L V E F C + +M K + + +
Sbjct: 8 DFETGEHQYQ--YKDILSVFEDAF--VDNFD-----CKDVQDMPKSILSKEEIDHIIMSK 58
Query: 92 ----AAYAHFPINCVTSEN------NTLLEIR-NFLGEKYIRRVKMAPGVKVSNSKQKDE 140
F E +L I FL + + +Q+D
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 141 LIIEGNDIE-----NVSRSAALIQQSTTVKN--KDIRK----FLDGLYVSEKTTVVTDA 188
L ND + NVSR +Q ++ ++R +DG+ S KT V D
Sbjct: 119 LY---NDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 2e-04
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 43/146 (29%)
Query: 8 QTVKIPRGLQCFVKAR--TVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEI 65
V++ V R T+ V PR L R + M+ +V F
Sbjct: 1781 SLVEV-------VFYRGMTMQVAVPRDELGRS------NYGMIAINPGRVAASFSQ---- 1823
Query: 66 AAVRTVCSHISNMLKGVTKGFLYKMRAA-YAHFPINC-----VTSEN----NTLLEIRNF 115
A++ V + T + Y N V + + +T+ + NF
Sbjct: 1824 EALQYVVERVGKR----TGWLV---EIVNY-----NVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 116 LGEKYIRRVKMAPGVKVSNSKQKDEL 141
+ + I +++ +S + + L
Sbjct: 1872 IKLQKIDIIELQ--KSLSLEEVEGHL 1895
Score = 33.9 bits (77), Expect = 0.026
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 115 FLGEKYIRRVKMAPGVKVSNSKQKDEL-----------IIEGNDIENVSRSAALIQQSTT 163
FLG Y+ + V+ S Q D++ +EGNDI ++ +T
Sbjct: 64 FLG--YV-----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 164 VKNKD-IRKFLDGLYVSEK 181
VK K+ I+ ++ ++++
Sbjct: 117 VKTKELIKNYITARIMAKR 135
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 28.7 bits (65), Expect = 0.97
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 19/80 (23%)
Query: 95 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELII---EGNDIENV 151
C +S + L +LG + P ++ + ++ G+ +
Sbjct: 38 RQ----CFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAK----MVCGPSGSQL--- 86
Query: 152 SRSAALIQQSTTVK-NKDIR 170
L++ +V N+ +
Sbjct: 87 ----VLLKLERSVTLNQRVA 102
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein
structure initiative; NMR {Salmonella typhimurium}
Length = 61
Score = 24.4 bits (54), Expect = 7.1
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 61 TKKEIAA-----VRTVCSHISNMLK 80
T I+ ++TV +H NM++
Sbjct: 15 TNHGISEKLHISIKTVETHRMNMMR 39
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 26.1 bits (58), Expect = 7.4
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 43 IDIHMV-NKRVLKVEKWFGTKKEIAAVRTVCSHISNMLK 80
+D +V R L + A + C+ + +LK
Sbjct: 102 VD--VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLK 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.374
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,708,711
Number of extensions: 151191
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 23
Length of query: 189
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 101
Effective length of database: 4,244,745
Effective search space: 428719245
Effective search space used: 428719245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)