RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7620
(189 letters)
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 146 bits (371), Expect = 6e-47
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 86 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 145
+ Y M Y+HFP+ + + I NFLGEK RR + V +EL + G
Sbjct: 1 WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56
Query: 146 NDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 181
DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 57 PDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 90.7 bits (225), Expect = 5e-25
Identities = 47/87 (54%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
Query: 1 MRQIVSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNK--RVLKVEKW 58
M+ I+SNQTV IP + +K RTV VKGPRGTL+RDF H+ +++ ++ K + L+V+KW
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 59 FGTKKEIAAVRTVCSHISNMLKGVTKG 85
+G +KE+A VRT+CSH+ NM+KGVT G
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLG 87
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 68.4 bits (167), Expect = 2e-16
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 10 VKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVR 69
++IP + +TV+G G++ R + ID+ V+ + +E K ++ +
Sbjct: 5 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVS-VDGDTVVIESDEDNAKTMSTIG 63
Query: 70 TVCSHISNMLKGVTKG 85
T SHI NM GVT+G
Sbjct: 64 TFQSHIENMFHGVTEG 79
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 66.0 bits (161), Expect = 2e-15
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 7 NQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIA 66
Q + +P G+ + VKGP+G L + + L VE+ +K A
Sbjct: 2 KQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVR--QDGDQLLVERPSDAQKHRA 59
Query: 67 AVRTVCSHISNMLKGVTKG 85
+ ++N +KGV+ G
Sbjct: 60 LHGLTRTLVANAVKGVSDG 78
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 64.4 bits (157), Expect = 5e-15
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 13 PRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVRTVC 72
P+G+ V V VKGP+G L+ + V + V++VE+ ++ +
Sbjct: 1 PKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVV--VEEGVVRVERPSDERRHKSLHGLTR 58
Query: 73 SHISNMLKGVTKG 85
+ I+N +KGV++G
Sbjct: 59 TLIANAVKGVSEG 71
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 62.5 bits (152), Expect = 4e-14
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKE 64
V+ V +P G+ + + +T+KG G L R L G
Sbjct: 3 VAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK--HADNTLTFGPRDGYADG 60
Query: 65 IAAVRTVCSHISNMLKGVTKG 85
A T + +++M+ GVT+G
Sbjct: 61 WAQAGTARALLNSMVIGVTEG 81
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 61.4 bits (149), Expect = 8e-14
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 VKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFGTKKEIAAVR 69
++IP G+ V TVTVKGP+G L R F H + I V V+ V + K A
Sbjct: 2 IEIPAGVTVTVNGNTVTVKGPKGELTRTF-HPDMTIT-VEGNVITVTRPSDEKHHRALHG 59
Query: 70 TVCSHISNMLKGVTKG 85
T S ++NM++GV+KG
Sbjct: 60 TTRSLLANMVEGVSKG 75
>d1rh1a1 b.110.1.1 (A:10-312) Colicin B N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 303
Score = 27.7 bits (61), Expect = 0.94
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 9 TVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDI 45
+V P G + ARTV G RG L + A+
Sbjct: 80 SVHSPWGNEKVSAARTVLENGLRGGLPEPSRPAAVSF 116
>d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human
poliovirus 1 Mahoney [TaxId: 12081]}
Length = 180
Score = 25.1 bits (55), Expect = 4.6
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 134 NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFL 173
+ D +E D + +I K +DIR +
Sbjct: 53 EVEILDAKALE--DQAGTNLEITIITLKRNEKFRDIRPHI 90
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 333
Score = 24.7 bits (53), Expect = 9.5
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 8/67 (11%)
Query: 5 VSNQTVKIPRGLQCFVKARTVTVKGPRGTLKRDFKHLAIDIHMVNKRVLKVEKWFG-TKK 63
V VKI +G + + +K +I+ R+ + T++
Sbjct: 272 VFKGAVKIRKGQAVTLMMDATNMPA----VKAIIYQYMEEIY---HRIPDSDPSSSKTRQ 324
Query: 64 EIAAVRT 70
I+ +RT
Sbjct: 325 IISTIRT 331
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.133 0.374
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 651,369
Number of extensions: 28355
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 13
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)