BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7621
(247 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 183 bits (465), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/102 (88%), Positives = 95/102 (93%), Gaps = 1/102 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
GF YKMRA YAHFPINCVTSENNT++EIRNFLGEKYIRRV+MAPGV V NS QKDELI+
Sbjct: 85 GFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIV 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 243
EGNDIE+VS SAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV
Sbjct: 145 EGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 186
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 27/34 (79%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71
+ T V+ GTKKE+AAVRTVCSHI NM+KGVT
Sbjct: 50 KRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVT 83
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 87/104 (83%), Positives = 94/104 (90%), Gaps = 1/104 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
GF YKMR+ YAHFPINCVT+E N+++EIRNFLGEKYIRRVKMAPGV V NS KQKDELII
Sbjct: 85 GFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELII 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
EGN +E+VS SAALIQQSTTVKNKDIRKFLDGLYVSEKTTV D
Sbjct: 145 EGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVEVD 188
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/25 (80%), Positives = 24/25 (96%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVTK 72
G+KKE+AAVRTVCSH+ NM+KGVTK
Sbjct: 60 GSKKELAAVRTVCSHVENMIKGVTK 84
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M PGV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A +RT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATIRTICSHVQNMIKGVT 85
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M PGV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVT 85
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/101 (78%), Positives = 87/101 (86%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M PGV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVT 85
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 77/106 (72%), Positives = 88/106 (83%), Gaps = 1/106 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
GF YKMR+ YAHFPIN V E +L+EIRNFLGEKYIRRV+M PGV + ++ QKDEL++
Sbjct: 87 GFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 247
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TVV S
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPES 192
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71
++ VD G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 52 QKKLRVDKWWGNRKELATVRTICSHVQNMIKGVT 85
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M PGV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
GNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 GGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVT 85
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M GV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVT 85
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 155 bits (392), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 86/101 (85%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELII 201
GF YKMR+ YAHFPIN V EN +L+EIRNFLGEKYIRRV+M GV S S+ QKDELI+
Sbjct: 87 GFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRTGVACSVSQAQKDELIL 146
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGNDIE VS SAALIQQ+TTVKNKDIRKFLDG+YVSEK TV
Sbjct: 147 EGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVT 71
G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVT 85
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 137 bits (345), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
GF YKMR+ YAHFPIN + N +EIRNFLGEK +RRV + GV + ++ QKDE+++
Sbjct: 85 GFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVV 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 243
EGND++ VS++AA IQQST VK KDIRKFLDG+YVSEKTT+V
Sbjct: 145 EGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQ 107
G +KE+AA+RTVCSHI NM+KGVT V + + F NV+L R +
Sbjct: 60 GVRKELAAIRTVCSHIKNMIKGVT------VGFRYKMRSVYAHFPINVTLQDGNRTVEIR 113
Query: 108 VFL 110
FL
Sbjct: 114 NFL 116
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 135 bits (340), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/105 (62%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELII 201
G+ YKMR YAHFPIN + +NT +EIRNFLGEK +R+V M GV + S++ KDEL++
Sbjct: 86 GYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVL 145
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDA 246
+GNDIE VSRSAALI Q VKNKDIRKFLDG+YVS+K T+ DA
Sbjct: 146 DGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITEDA 190
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 41 FDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
VD GT++ +AA+RT SH+ N++ GVTK
Sbjct: 54 LQVDAWFGTRRTMAAIRTAISHVQNLITGVTK 85
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELII 201
GFLY+MR YAHFPIN NN +EIRNFLGEK +R+V+M GVK+ S++ KDE+I+
Sbjct: 90 GFLYRMRFVYAHFPINASIDGNNKSIEIRNFLGEKKVRKVEMLDGVKIVRSEKVKDEIIL 149
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
EGNDIE VSRS ALI Q VK KDIRKFLDG+YVSEK + +
Sbjct: 150 EGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGKIAVE 193
Score = 30.8 bits (68), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVTK 72
G++K A++RT SH+ N++ GVT+
Sbjct: 65 GSRKTSASIRTALSHVDNLIAGVTQ 89
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 64/101 (63%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
GF YKMR YAHFPIN +EN T++EIRNFLGE+ R +K PGV VS +S KDE+II
Sbjct: 85 GFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIII 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGN +ENVS+SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 145 EGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELII 201
GF YKMR YAHFPIN +EN T++EIRNFLGE+ R +K PGV VS +S KDE+I+
Sbjct: 85 GFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIL 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
EGN +ENVS+SAA I+Q V+NKDIRKFLDG+YVSE+ +
Sbjct: 145 EGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 124 bits (310), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 1/104 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELII 201
GF YKMR YAHFPIN + +EIRNFLGEK +R+V+M GV + S++ KDE+++
Sbjct: 90 GFRYKMRFVYAHFPINASIGGDGKSIEIRNFLGEKKVRKVEMLDGVTIVRSEKVKDEIVL 149
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
+GNDIE VSRS ALI Q VK KDIRKFLDG+YVSEK+ +V +
Sbjct: 150 DGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKSKIVEE 193
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVTK 72
GT+K A++RT SH+ N++ GVT+
Sbjct: 65 GTRKTSASIRTALSHVDNLISGVTR 89
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 121 bits (303), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 76/104 (73%), Gaps = 1/104 (0%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELII 201
GF YKMR YA FPIN + +N +EIRNFLGEK +R+V + GV + S++ KDE+++
Sbjct: 89 GFRYKMRFVYADFPINASITNDNKSIEIRNFLGEKKVRKVDLLDGVSIIRSEKVKDEVVL 148
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
+GNDIE VSRS ALI Q VK KDIRKFLDG+YVSEK VV +
Sbjct: 149 DGNDIELVSRSCALINQKCHVKKKDIRKFLDGIYVSEKGAVVVE 192
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 48 GTKKEIAAVRTVCSHISNMLKGVTK 72
G++K AA+RT SH+ N++ GVTK
Sbjct: 64 GSRKTSAAIRTALSHVENLITGVTK 88
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 108 bits (269), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELII 201
G+ +KM+ A+AHFPI +++ + +EI++FLGEK IRR++ PGVK+S ++K+ L +
Sbjct: 85 GYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTL 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
+G D+ NVS++ ALI QS VK KDIR+FLDG+YVS+K
Sbjct: 145 QGIDLNNVSQTCALIHQSCLVKEKDIRQFLDGIYVSDK 182
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 70/98 (71%), Gaps = 1/98 (1%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVK-VSNSKQKDELII 201
G+ YKMR YAHFPIN ++ ++EIRNF GEK +RR+++ G+ N K KDE+++
Sbjct: 85 GYEYKMRFVYAHFPINVAVTDGGRVVEIRNFFGEKIVRRIELLDGITCYRNEKAKDEIVL 144
Query: 202 EGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
GN +E +S+S A IQ + +K KD+RKFLDG+YVSE+
Sbjct: 145 TGNSLELLSQSCATIQLRSAIKYKDVRKFLDGIYVSER 182
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
VD G +K+IA ++T+ S I NM+ GVTK
Sbjct: 55 VDLWFGNRKQIACIKTITSIIENMITGVTK 84
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 143 GFLYKMRAAYAHFPINC--VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDEL 199
G+ YKMR YAHFPIN V + +E+RNFLG+K IR V + GV + S KDE+
Sbjct: 85 GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
++ GN +E+VS++AA +QQ V+NKDIRKFLDG+YVS K +V D
Sbjct: 145 VLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIVED 190
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
V NG +K +AA+RTV S + NM+ GVTK
Sbjct: 55 VAVHNGDRKHVAALRTVKSLVDNMITGVTK 84
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 143 GFLYKMRAAYAHFPINC--VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDEL 199
G+ YKMR YAHFPIN V + +E+RNFLG+K IR V + GV + S KDE+
Sbjct: 85 GYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEI 144
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTD 245
++ GN +E+VS++AA +QQ V+NKDIRKFLDG+YVS K + D
Sbjct: 145 VLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFITED 190
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
V NG +K +AA+RTV S + NM+ GVTK
Sbjct: 55 VAVHNGGRKHVAALRTVKSLVDNMITGVTK 84
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFP+ + ++E NFLGEK R K+ PGV V QKD++I+E
Sbjct: 90 GFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTVKV--QKDDVIVE 145
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G DIE V ++AA I+Q+T VK+KD R F+DG+Y+ EK
Sbjct: 146 GIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 70/100 (70%), Gaps = 4/100 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFPIN V E + + I NFLGEK +R ++ PGVKV + ++I+E
Sbjct: 86 GFRYKLKIMYSHFPIN-VKVEGDKFI-ISNFLGEKGLRIARIMPGVKVQV--KGSDVIVE 141
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTV 242
G D+E V+++AA I+ +T VK+KD RKF+DG+Y+ E+ +
Sbjct: 142 GIDVEKVAQTAANIELATKVKDKDRRKFMDGIYIYEREVI 181
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ YK++ ++HFPI E N ++ IRNF+GEK R K+ VKV S + ++IIE
Sbjct: 86 GYRYKLKIIFSHFPITVSVDEKNKVVRIRNFMGEKSDRIAKIYGNVKVKVSGE--DIIIE 143
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G DIE V +AA I+++T V ++D R F+DG+Y+ EK
Sbjct: 144 GVDIEEVGLTAASIERATRVTDRDRRVFMDGIYIYEK 180
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 85.1 bits (209), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFPI + ++E NFLGEK RR K+ PGV V Q E+I+E
Sbjct: 85 GFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTVKVKGQ--EIIVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E V ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 141 GIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 46 DNGTKKEIAAVRTVCSHISNMLKGVTK 72
D +K++A VRT +HI+NM+KGVT+
Sbjct: 58 DFPRRKDVAIVRTFKAHINNMIKGVTE 84
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFPI+ + ++E NFLGEK R+ K+ PGV V Q E+I+E
Sbjct: 85 GFTYKLKVVYSHFPISVKVQGDEVIIE--NFLGEKAPRKAKILPGVTVKVRGQ--EIIVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E V ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 141 GIDKEAVGQTAANIEQATRITKWDRRIFQDGIYIVEKA 178
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 46 DNGTKKEIAAVRTVCSHISNMLKGVTK 72
D +K++A RT +HI NM+KGVT+
Sbjct: 58 DFPRRKDVAIARTFAAHIRNMIKGVTE 84
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/98 (43%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFPI + ++E NFLGEK RR K+ PGV V Q E+I+E
Sbjct: 85 GFTYKLKVVYSHFPITVKVQGDEVIIE--NFLGEKAPRRAKILPGVTVKVKGQ--EIIVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 141 GIDKEATGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 46 DNGTKKEIAAVRTVCSHISNMLKGVTK 72
D +K++A VRT +HI+NM+KGVT+
Sbjct: 58 DFPRRKDVAIVRTFKAHINNMIKGVTE 84
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ YAHFP+ N ++E NFLGEK+ RR ++ GV V S + ++I+
Sbjct: 85 GFTYKLKIRYAHFPMKVSVKGNEVIIE--NFLGEKHPRRARIMEGVTVKISGE--DVIVT 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E V ++AA I+Q+T +K +D R F DG+Y+ EK
Sbjct: 141 GIDKEKVGQTAANIEQATRIKGRDPRVFQDGIYIVEKA 178
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 45 CDNGTKKEIAAVRTVCSHISNMLKGVTK 72
C+ +K+ A V T+ +HI+NM+KGVT+
Sbjct: 57 CEYPRRKDKAMVGTIRAHINNMIKGVTE 84
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ V+++ NT++ I NFLGEKY R K+ GV V S + E+I+
Sbjct: 85 GFEYKLVIRYAHFPMK-VSAKGNTVM-IDNFLGEKYTRTAKIMDGVTVKVSGE--EVIVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK++ Y+HFP+ + ++E NFLGEK RR K+ PGV V Q E+ +E
Sbjct: 85 GFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNPRRAKILPGVTVKVRGQ--EITVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E V ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 141 GIDKEKVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 50 KKEIAAVRTVCSHISNMLKGVTK 72
KK+IA RT +HI+NM+KGVT+
Sbjct: 62 KKDIAIARTFKAHINNMIKGVTE 84
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ V+++ NT+ I NFLGEKY R K+ GV V S + E+I+
Sbjct: 85 GFEYKLVIRYAHFPMK-VSAKGNTVT-IDNFLGEKYTRTAKIMDGVTVKVSGE--EVIVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 80.9 bits (198), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ V+++ NT+ I NFLGEKY R K+ GV V S + E+I+
Sbjct: 85 GFEYKLVIRYAHFPMK-VSAKGNTVT-IDNFLGEKYTRTAKIMDGVTVKVSGE--EVIVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 141 FTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELI 200
G+ YK++ Y+HFPI + N ++ I+NFLGEK R K+ G V + + +++I
Sbjct: 84 LKGYRYKLKIIYSHFPITVEVDDRNRIVRIKNFLGEKSDRIAKII-GEDVKVTVKGEDII 142
Query: 201 IEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYV 236
+EG DIE+V ++AA I+ +T VK+KD R F DG+Y+
Sbjct: 143 VEGIDIEHVGQTAANIELATKVKDKDRRVFADGIYI 178
>sp|A6UWV4|RL6_META3 50S ribosomal protein L6P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1
Length = 183
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YKM+ YAHFP+ N +++ NFLGEK+ R+ + GVKV S + ++I+
Sbjct: 86 GFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHPRKATIMEGVKVKVSGE--DVIVT 141
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
G D E ++AA I+Q+T V+ +D R F DG+Y+ EK
Sbjct: 142 GIDKEKTGQTAANIEQATRVRGRDTRVFQDGIYIVEKA 179
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ V+++ NT++ I NFLGEKY R K+ GV V S + ++++
Sbjct: 85 GFEYKLVIRYAHFPMK-VSAKGNTVM-IDNFLGEKYTRTAKIMDGVTVKVSGE--DVVVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GANKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ VT + NT++ I NFLGEKY R K+ GV V + +E+I+
Sbjct: 85 GFEYKLVIRYAHFPMK-VTFKGNTVI-IDNFLGEKYPRTAKVMEGVTVKVNG--EEVIVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|P14030|RL6_METVA 50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3
SV=1
Length = 182
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YK+ YAHFP+ VT + NT++ I NFLGEKY R K+ GV V + +E+I+
Sbjct: 85 GFEYKLVIRYAHFPMK-VTFKGNTVI-IDNFLGEKYPRTAKVMEGVTVKVNG--EEVIVS 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E V ++AA I+Q+T VK +D R F DG+Y+ EK
Sbjct: 141 GTNKEFVGQTAANIEQATKVKGRDTRIFQDGIYIVEK 177
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 8/100 (8%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGV--KVSNSKQKDELI 200
GF YK++ Y+HFP+ + ++E NFLGEK RR K+ PGV KV S E+I
Sbjct: 85 GFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTVKVMGS----EVI 138
Query: 201 IEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
+EG D E V ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 139 VEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 50 KKEIAAVRTVCSHISNMLKGVTK 72
KK+IA RT +HI+NM+KGVT+
Sbjct: 62 KKDIAIARTFKAHIANMIKGVTE 84
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 61/94 (64%), Gaps = 4/94 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ YKM+ ++HFPI+ + +EI NF+GEK R K+ PGV V Q ++IIE
Sbjct: 90 GWRYKMKIVFSHFPISVKVVGDR--VEIHNFIGEKAPRVAKVLPGVTVKV--QGRDVIIE 145
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYV 236
G DIE V+++AA I+Q+T + D R F+DG+Y+
Sbjct: 146 GTDIEKVAQTAANIEQATKITEFDRRVFMDGIYI 179
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 11/108 (10%)
Query: 137 VCISFT-GFLYKMRAAYAHFPINC-VTSENNTLLEIRNFLGEKYIRRVKMAPG--VKVSN 192
+C T G+LY M+ Y+HFPI V E LEI NFLGEKY R ++ PG VKV +
Sbjct: 74 MCTGVTKGYLYSMKVVYSHFPIQIKVVGET---LEIVNFLGEKYPRSARILPGTTVKVGS 130
Query: 193 SKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
DE+ + G D E V +AA I+++T ++++D R F DG+Y+ ++
Sbjct: 131 ----DEVTVTGIDKEVVGSTAANIERATRIRDRDPRVFQDGIYIVSRS 174
>sp|O28370|RL6_ARCFU 50S ribosomal protein L6P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl6p PE=3 SV=1
Length = 196
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF Y ++ YAHFPI N ++E NF+GEK+ RR K+ +V S Q ++ +
Sbjct: 103 GFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ--DIYVR 158
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G DIE ++AA ++Q+T +K KD R F DG+Y+ +K
Sbjct: 159 GIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 66/105 (62%), Gaps = 4/105 (3%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ Y ++ Y HFP+ S N ++I+N +GEK IRR K+ GVKV N K +D +I+E
Sbjct: 85 GYRYYLKIIYTHFPVTVKVSGNE--VQIQNLIGEKNIRRAKIMTGVKV-NVKGED-IIVE 140
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 247
G DIE V ++AA I+ ++ + D R F DG+Y+ +K + ++ +
Sbjct: 141 GQDIEKVGQTAANIELASKITGYDRRVFADGIYIYKKEVIGSEQT 185
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 8/100 (8%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGV--KVSNSKQKDELI 200
GF Y+++ Y+HFP+ + ++E NFLGEK RR K+ PGV KV S E+
Sbjct: 85 GFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNPRRAKILPGVTVKVKGS----EIE 138
Query: 201 IEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKT 240
+EG D E V ++AA I+Q+T + D R F DG+Y+ EK
Sbjct: 139 VEGIDKEAVGQTAANIEQATRITKWDRRVFQDGIYIVEKA 178
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 50 KKEIAAVRTVCSHISNMLKGVTK 72
KK++A VRT +HI+NM+KGVT+
Sbjct: 62 KKDVAIVRTFKAHINNMIKGVTE 84
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 68/108 (62%), Gaps = 4/108 (3%)
Query: 140 SFTGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDEL 199
+ G+ Y ++ HFPI+ S + +++ N +GEK IRR K+ PGVKV+ + +++
Sbjct: 85 TINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAKILPGVKVT--VKGEDI 140
Query: 200 IIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVTDAS 247
++EG+DI NV+++AA I+ ST + D R F DG+Y+ +K + + S
Sbjct: 141 VVEGSDIYNVAQTAANIESSTKIVGYDRRIFSDGIYIYKKEVIGLEQS 188
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF Y+MR Y+HFPI ++ + I NFLGE+ R + V V K DE++I
Sbjct: 83 GFEYRMRVVYSHFPIQVKVADGK--VAISNFLGERKPRFATIVGDVNVEVGK--DEILIR 138
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G D E V ++ A I+Q+T V+ D+R F DG+Y+ EK
Sbjct: 139 GMDKEAVGQTMANIEQATRVRGFDVRIFQDGIYLVEK 175
>sp|P14135|RL6_HALMA 50S ribosomal protein L6P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl6p PE=1
SV=3
Length = 178
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ Y M Y+HFP+ + ++E NFLGEK RR + V + EL +
Sbjct: 80 GWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRTTIHGDTDVEIDGE--ELTVS 135
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 136 GPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172
>sp|Q9HPB8|RL6_HALSA 50S ribosomal protein L6P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl6p PE=1 SV=3
Length = 178
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ YK+ Y+HFP+ V E ++ I+NFLGEK RR ++ V + E+ +
Sbjct: 80 GWEYKLEVHYSHFPMQ-VDVEGEEVV-IQNFLGEKAARRTQIRGDTDVVVDDE--EVTLS 135
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G IE+V ++AA I+Q T V +KD R F DG+Y+ EK
Sbjct: 136 GPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 4/97 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF Y+M+ YAHFP++ + + ++E NFLGE++ R + KV + DE+ I
Sbjct: 84 GFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHPRTARFVGDTKVQV--KGDEVEIT 139
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E+V ++ A I+Q+T +K +D R F DG+Y+ K
Sbjct: 140 GINKEHVGQTMANIEQATKIKGRDPRVFQDGIYLVSK 176
>sp|Q3IMX2|RL6_NATPD 50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl6p PE=3 SV=1
Length = 177
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
G+ Y M Y+HFP+ + ++E NFLGEK R+ + V + EL +
Sbjct: 79 GWEYSMEVFYSHFPMQVSVEGGDIVIE--NFLGEKAPRKTPVRGDTSVEVDGE--ELTVS 134
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSE 238
G IE+V ++AA I+Q T V +KD R F DG+Y++E
Sbjct: 135 GPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
>sp|Q2NFX3|RL6_METST 50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl6p PE=3 SV=1
Length = 184
Score = 67.4 bits (163), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 143 GFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE 202
GF YKM+ YAHFP+ ++ I NFLGE+ R+ K+ G V S + +++ I
Sbjct: 85 GFTYKMKIVYAHFPMTVKVQ--GKIVTIDNFLGERSPRKAKII-GDDVKVSVKGEDVTIT 141
Query: 203 GNDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
G + E+V ++ A I+Q+T +K +D R F DG+Y+ +K
Sbjct: 142 GINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
>sp|Q8TW14|RL6_METKA 50S ribosomal protein L6P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl6p PE=3 SV=1
Length = 204
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 78/155 (50%), Gaps = 24/155 (15%)
Query: 91 FLW---NVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYK 147
+LW + ++ TR+ Q +L ++ K++I QK + G YK
Sbjct: 62 YLWVEDDEVVIAATRSNRRQKAILGMI------KAYIENMQKGVTEG---------HEYK 106
Query: 148 MRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK---QKDELIIEGN 204
++ Y+HFP + + I NF+GE R +A V N++ Q ++I+ G
Sbjct: 107 LKLVYSHFPPEVKVDQKEGKVYIENFMGENVPR---VAEIVDPENTEVIVQGQDIIVRGI 163
Query: 205 DIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
D E V ++AA ++Q+T +K++D R F DG+Y+ EK
Sbjct: 164 DKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,600,361
Number of Sequences: 539616
Number of extensions: 3466035
Number of successful extensions: 7965
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 7748
Number of HSP's gapped (non-prelim): 130
length of query: 247
length of database: 191,569,459
effective HSP length: 114
effective length of query: 133
effective length of database: 130,053,235
effective search space: 17297080255
effective search space used: 17297080255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)