Query psy7621
Match_columns 247
No_of_seqs 165 out of 1033
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 23:03:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 1.5E-59 5.2E-64 396.4 17.2 169 8-246 4-190 (190)
2 3u5e_H L8, RP24, YL11, 60S rib 100.0 5E-59 1.7E-63 393.5 17.1 168 8-245 4-190 (191)
3 4a17_E RPL9, 60S ribosomal pro 100.0 4.4E-59 1.5E-63 393.1 14.6 168 8-245 4-188 (188)
4 2zkr_e 60S ribosomal protein L 100.0 6.9E-56 2.3E-60 374.1 16.2 170 8-247 4-192 (192)
5 3j21_F 50S ribosomal protein L 100.0 2.1E-55 7.3E-60 369.6 16.7 160 10-243 7-181 (184)
6 1vq8_E 50S ribosomal protein L 100.0 4.9E-53 1.7E-57 354.6 17.5 161 11-245 3-178 (178)
7 3v2d_H 50S ribosomal protein L 100.0 5.4E-48 1.9E-52 322.9 13.7 156 7-241 1-174 (180)
8 3r8s_G 50S ribosomal protein L 100.0 1.4E-44 4.8E-49 301.4 11.8 151 8-237 1-169 (176)
9 1nkw_E 50S ribosomal protein L 100.0 1.6E-42 5.4E-47 298.5 17.5 157 5-240 26-200 (212)
10 1rl6_A Protein (ribosomal prot 100.0 7.8E-43 2.7E-47 291.5 14.5 153 8-239 1-171 (177)
11 2zjr_E 50S ribosomal protein L 100.0 1E-43 3.6E-48 299.2 4.2 154 7-239 1-172 (185)
12 3bbo_I Ribosomal protein L6; l 100.0 1.4E-42 4.8E-47 300.4 9.4 156 5-239 41-215 (223)
13 2cql_A OK/SW-CL.103, 60S ribos 99.7 7.9E-17 2.7E-21 124.1 5.4 71 3-73 4-94 (100)
14 2cql_A OK/SW-CL.103, 60S ribos 59.6 9.1 0.00031 29.0 3.8 23 181-205 16-38 (100)
15 2ctf_A Vigilin; K homology typ 48.6 25 0.00086 26.2 4.6 33 186-219 57-89 (102)
16 3iz5_F 60S ribosomal protein L 35.3 35 0.0012 28.6 3.9 34 186-219 41-79 (190)
17 3u5e_H L8, RP24, YL11, 60S rib 35.1 35 0.0012 28.6 3.9 11 209-219 68-78 (191)
18 3j21_F 50S ribosomal protein L 34.0 36 0.0012 28.4 3.7 11 209-219 68-78 (184)
19 1vq8_E 50S ribosomal protein L 33.9 38 0.0013 28.2 3.9 35 183-219 33-73 (178)
20 4a17_E RPL9, 60S ribosomal pro 32.1 36 0.0012 28.5 3.5 11 209-219 68-78 (188)
21 1rl6_A Protein (ribosomal prot 31.3 38 0.0013 28.1 3.5 11 209-219 64-74 (177)
22 2zkr_e 60S ribosomal protein L 31.3 32 0.0011 28.9 3.0 35 183-219 37-80 (192)
23 3bbn_S Ribosomal protein S19; 30.8 22 0.00076 27.2 1.8 16 1-16 44-60 (92)
24 3r8n_S 30S ribosomal protein S 29.2 20 0.00069 26.7 1.3 16 1-16 42-58 (79)
25 3v2d_H 50S ribosomal protein L 28.5 41 0.0014 27.9 3.2 11 209-219 65-75 (180)
26 3a1p_B 30S ribosomal protein S 28.0 23 0.0008 27.1 1.5 16 1-16 44-60 (93)
27 2w7a_A LINE-1 ORF1P; RNA-bindi 27.8 26 0.00088 27.1 1.8 35 197-232 63-100 (100)
28 2opv_A KHSRP protein; KH domai 24.5 98 0.0034 21.6 4.2 20 199-219 63-82 (85)
29 3i1m_S 30S ribosomal protein S 24.1 26 0.0009 26.8 1.2 16 1-16 44-60 (92)
30 2cpq_A FragIle X mental retard 20.1 60 0.002 24.4 2.4 43 178-220 36-79 (91)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=1.5e-59 Score=396.38 Aligned_cols=169 Identities=53% Similarity=0.791 Sum_probs=159.6
Q ss_pred eecceeeeeCCCc---------EEeeCCeEEEEEEE-----ee---eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccc
Q psy7621 8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKT-----YR---WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGV 70 (247)
Q Consensus 8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~-----~~---~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGV 70 (247)
++++.|++||++| +|+||+|+|.++++ +. .++.+.|+.++++|+++|+|||+||||+||++||
T Consensus 4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GV 83 (190)
T 3iz5_F 4 ILASETMEIPEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGV 83 (190)
T ss_dssp CCCCEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCccEECCCCCEEEEeCCEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeee
Confidence 5689999999998 69999999999885 12 4678999999999999999999999999999999
Q ss_pred cccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEE
Q psy7621 71 TKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRA 150 (247)
Q Consensus 71 tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~ 150 (247)
|+ ||.|+||+
T Consensus 84 t~----------------------------------------------------------------------Gf~~kL~l 93 (190)
T 3iz5_F 84 TK----------------------------------------------------------------------GYRYKMRF 93 (190)
T ss_dssp HT----------------------------------------------------------------------CEEEEEEE
T ss_pred cc----------------------------------------------------------------------CEEEEEEE
Confidence 99 99999999
Q ss_pred EEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCC-CCeEEEEeccHhHHhHHHHhhhccccccccceee
Q psy7621 151 AYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDIRK 229 (247)
Q Consensus 151 ~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kq-kdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRk 229 (247)
+|+||||++.++++|+.|+|+||||||||++++||+||+++.+++ +|+|+|+|+|+|.|||+||+|||+|++||||||+
T Consensus 94 vgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vgq~AA~Irq~~~vk~kD~R~ 173 (190)
T 3iz5_F 94 VYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRK 173 (190)
T ss_dssp ECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHHHHHHHHHHHTCCCSSCTTT
T ss_pred EEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHHHHHHHHHhhccccCCcccE
Confidence 999999999888899999999999999999999999999999954 5899999999999999999999999999999999
Q ss_pred eeceEEEeeeeeeecCC
Q psy7621 230 FLDGLYVSEKTTVVTDA 246 (247)
Q Consensus 230 FlDGiYvsek~~vqq~d 246 (247)
||||||||||++++|++
T Consensus 174 F~DGiyv~ek~~~~~~~ 190 (190)
T 3iz5_F 174 FLDGIYVSDKGTITEDA 190 (190)
T ss_dssp CCCEEEECCCCCCCCCC
T ss_pred eecCEEEEeeeEEeccC
Confidence 99999999999999874
No 2
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=5e-59 Score=393.47 Aligned_cols=168 Identities=45% Similarity=0.683 Sum_probs=158.6
Q ss_pred eecceeeeeCCCc---------EEeeCCeEEEEEEEe-------eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621 8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-------RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71 (247)
Q Consensus 8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-------~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt 71 (247)
++++.|++||++| +|+||+|+|.++++. ..++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus 4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 83 (191)
T 3u5e_H 4 IQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVT 83 (191)
T ss_dssp EEEEEEEECCTTCEEEEETTEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeec
Confidence 5689999999998 699999999998862 137889999999999999999999999999999999
Q ss_pred ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621 72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA 151 (247)
Q Consensus 72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~ 151 (247)
+ ||.|+||++
T Consensus 84 ~----------------------------------------------------------------------Gf~~kL~lv 93 (191)
T 3u5e_H 84 K----------------------------------------------------------------------GYKYKMRYV 93 (191)
T ss_dssp T----------------------------------------------------------------------CEEEEEEEE
T ss_pred c----------------------------------------------------------------------CEEEEEEEE
Confidence 9 999999999
Q ss_pred EeecCceeee--ccCCCeeEEecccCceeeEEEeCCCCeEEEecC-CCCeEEEEeccHhHHhHHHHhhhcccccccccee
Q psy7621 152 YAHFPINCVT--SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIR 228 (247)
Q Consensus 152 ~ahfpi~~~~--~en~~~leirnfLGek~~~~vkmp~GVkvs~~k-qkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiR 228 (247)
|+||||++.+ +++|+.|+|+||||||||++++||+||+++.++ |+|+|+|+|+|+|.|||+||+|||+|++||||||
T Consensus 94 gvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~~vk~kD~R 173 (191)
T 3u5e_H 94 YAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIR 173 (191)
T ss_dssp CSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTTCCCSSCTT
T ss_pred EEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhcccCCCccc
Confidence 9999999877 889999999999999999999999999999994 3799999999999999999999999999999999
Q ss_pred eeeceEEEeeeeeeecC
Q psy7621 229 KFLDGLYVSEKTTVVTD 245 (247)
Q Consensus 229 kFlDGiYvsek~~vqq~ 245 (247)
+||||||||||++++|+
T Consensus 174 ~FlDGiyv~ek~~~~~~ 190 (191)
T 3u5e_H 174 KFLDGIYVSHKGFITED 190 (191)
T ss_dssp TCCCEEEEEEEEESSSC
T ss_pred EeecCeEEEEeeEEEec
Confidence 99999999999999886
No 3
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=4.4e-59 Score=393.05 Aligned_cols=168 Identities=39% Similarity=0.677 Sum_probs=157.1
Q ss_pred eecceeeeeCCCc---------EEeeCCeEEEEEEEe-----e--eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621 8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-----R--WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71 (247)
Q Consensus 8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-----~--~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt 71 (247)
++++.|++||++| +|+||+|+|.++++. . .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus 4 i~~~~~I~IP~gV~v~i~~~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 83 (188)
T 4a17_E 4 LLTEVNVPIPDKVTITAKQRVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVT 83 (188)
T ss_dssp EEEEEECCCCTTCEEEEETTEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecccEECCCCcEEEEeCCEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeec
Confidence 6689999999999 699999999998852 2 46789999999999999999999999999999999
Q ss_pred ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621 72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA 151 (247)
Q Consensus 72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~ 151 (247)
+ ||.|+|+++
T Consensus 84 ~----------------------------------------------------------------------Gf~~kL~lv 93 (188)
T 4a17_E 84 E----------------------------------------------------------------------GYKFKMKLA 93 (188)
T ss_dssp S----------------------------------------------------------------------CEEEEEEEE
T ss_pred c----------------------------------------------------------------------CeEEEEEEE
Confidence 9 999999999
Q ss_pred EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecC-CCCeEEEEeccHhHHhHHHHhhhccccccccceeee
Q psy7621 152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKF 230 (247)
Q Consensus 152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~k-qkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkF 230 (247)
|+||||++.++++|+.|+|+||||||||++++||+||+++.++ ++|+|+|+|+|+|.|||+||+|||+|++||||||+|
T Consensus 94 gvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vgq~AA~Ir~~~~vk~kD~R~F 173 (188)
T 4a17_E 94 FAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQF 173 (188)
T ss_dssp CSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHHHHHHHHHHHTCCCSSCHHHH
T ss_pred EEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHHHHHHHHHhhcccCCCcccEe
Confidence 9999999988889999999999999999999999999999994 359999999999999999999999999999999999
Q ss_pred eceEEEeeeeeeecC
Q psy7621 231 LDGLYVSEKTTVVTD 245 (247)
Q Consensus 231 lDGiYvsek~~vqq~ 245 (247)
|||||||||++++++
T Consensus 174 ~DGiyv~ek~~~~~~ 188 (188)
T 4a17_E 174 LDGIYVSDKRLAMNE 188 (188)
T ss_dssp CCEEEEEEEEECC--
T ss_pred ecCeEEEEeEEEecC
Confidence 999999999999874
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=6.9e-56 Score=374.13 Aligned_cols=170 Identities=60% Similarity=0.859 Sum_probs=147.6
Q ss_pred eecceeeeeCCCc---------EEeeCCeEEEEEEEe-e-----eCCE---EEEEecCCChhhhhhHhhHHHHHhhhccc
Q psy7621 8 IYQSFFYEIPPDL---------NPGGGGGCLYLNKTY-R-----WEET---FDVDCDNGTKKEIAAVRTVCSHISNMLKG 69 (247)
Q Consensus 8 srgK~~ieIP~~v---------~v~Gp~G~L~l~~~~-~-----~~~~---~~V~~~~~~kk~~a~~gTv~S~I~NMikG 69 (247)
+..+.|++||++| +|+||+|+|.++++. . .++. +.|..++++|+++|+|||+||||+||++|
T Consensus 4 ~~~k~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~G 83 (192)
T 2zkr_e 4 ILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKG 83 (192)
T ss_dssp ------CCCCTTCEEEEETTEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcEEcCCCCEEEEeCCEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEe
Confidence 3478999999998 699999999998873 2 3566 99999999999999999999999999999
Q ss_pred ccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEE
Q psy7621 70 VTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMR 149 (247)
Q Consensus 70 Vtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr 149 (247)
||+ ||.|+|+
T Consensus 84 Vt~----------------------------------------------------------------------Gf~~~L~ 93 (192)
T 2zkr_e 84 VTL----------------------------------------------------------------------GFRYKMR 93 (192)
T ss_dssp HHT----------------------------------------------------------------------CEEEEEE
T ss_pred ecc----------------------------------------------------------------------CcEEEEE
Confidence 999 9999999
Q ss_pred EEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCC-CCeEEEEeccHhHHhHHHHhhhcccccccccee
Q psy7621 150 AAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNKDIR 228 (247)
Q Consensus 150 ~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kq-kdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiR 228 (247)
++|+|||+++..+++|+.|+||||||||||+.++||+||+++.+++ +|+|+|+|+|+|.|+|+||.||++|.+||||||
T Consensus 94 lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vgq~AA~IR~~~~vk~kD~R 173 (192)
T 2zkr_e 94 SVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173 (192)
T ss_dssp EECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHHHHHHHHHHHTCCSSSCTT
T ss_pred EEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHHHHHHHHHhhCcCCCCCcc
Confidence 9999999998777789999999999999999999999999999854 599999999999999999999999999999999
Q ss_pred eeeceEEEeeeeeeecCCC
Q psy7621 229 KFLDGLYVSEKTTVVTDAS 247 (247)
Q Consensus 229 kFlDGiYvsek~~vqq~d~ 247 (247)
+||||||||||++++++|.
T Consensus 174 ~F~Dgiyv~~k~~~~~~~~ 192 (192)
T 2zkr_e 174 KFLDGIYVSEKGTVQQADE 192 (192)
T ss_dssp TCCCEEEEEEC--------
T ss_pred EeecCEEEEEeccccccCC
Confidence 9999999999999998773
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-55 Score=369.60 Aligned_cols=160 Identities=38% Similarity=0.534 Sum_probs=149.7
Q ss_pred cceeeeeCCCc---------EEeeCCeEEEEEEE-----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccccc
Q psy7621 10 QSFFYEIPPDL---------NPGGGGGCLYLNKT-----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVK 74 (247)
Q Consensus 10 gK~~ieIP~~v---------~v~Gp~G~L~l~~~-----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~~ 74 (247)
.+.|++||++| +|+||+|+|.++++ +. .++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus 7 ~~~~I~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~-- 84 (184)
T 3j21_F 7 IREEVEIPEGVEVTVEGYKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTE-- 84 (184)
T ss_dssp CEEEEECCSSCEEEESSSEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred eeEEEeCCCCcEEEEeCCEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeecc--
Confidence 57899999998 69999999999884 12 478999999999999999999999999999999999
Q ss_pred cceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEee
Q psy7621 75 DCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAH 154 (247)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ah 154 (247)
||.|+|+++|+|
T Consensus 85 --------------------------------------------------------------------Gf~~kL~lvgvg 96 (184)
T 3j21_F 85 --------------------------------------------------------------------GFTYKLKVVYSH 96 (184)
T ss_dssp --------------------------------------------------------------------CEEEEEEEECSS
T ss_pred --------------------------------------------------------------------CeEEEEEEEEec
Confidence 999999999999
Q ss_pred cCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeeceE
Q psy7621 155 FPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGL 234 (247)
Q Consensus 155 fpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlDGi 234 (247)
|||++..+ |+.|+|+||||||||++++||+||+++.++ ++|+|+|+|+|.|||+||+|||+|+|||||||+|||||
T Consensus 97 ypira~~~--g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~--~~Iil~G~Dke~Vgq~AA~Ir~~~~vK~KDiR~F~DGi 172 (184)
T 3j21_F 97 FPISVKVQ--GDEVIIENFLGEKAPRKAKILPGVTVKVRG--QEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDGI 172 (184)
T ss_dssp SCCEEEEE--TTEEEEECGGGCSSCEEEECCTTEEEEEET--TEEEEEESCHHHHHHHHHHHHHHHCCCSSCSSSCCCEE
T ss_pred ccceEEEc--CCEEEEEecCCccccEEEECCCCeEEEecC--CEEEEEECCHHHHHHHHHHHhhccccCCCcccEeeCCE
Confidence 99999775 788999999999999999999999999985 59999999999999999999999999999999999999
Q ss_pred EEeeeeeee
Q psy7621 235 YVSEKTTVV 243 (247)
Q Consensus 235 Yvsek~~vq 243 (247)
|||||+-..
T Consensus 173 yv~ek~~~~ 181 (184)
T 3j21_F 173 YIVEKAGKP 181 (184)
T ss_dssp EESCSSSCC
T ss_pred EEEecCccc
Confidence 999998544
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=4.9e-53 Score=354.62 Aligned_cols=161 Identities=34% Similarity=0.526 Sum_probs=147.1
Q ss_pred ceeeeeCCCc---------EEeeCCeEEEEEE-E----e-eeCCEEEEEecCCChhhhhhHhhHHHHHhhhccccccccc
Q psy7621 11 SFFYEIPPDL---------NPGGGGGCLYLNK-T----Y-RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKD 75 (247)
Q Consensus 11 K~~ieIP~~v---------~v~Gp~G~L~l~~-~----~-~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk~~~ 75 (247)
+.|++||++| +|+||+|+|.+++ + + ..++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus 3 ~~pI~IP~gV~v~i~~~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~--- 79 (178)
T 1vq8_E 3 RVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTE--- 79 (178)
T ss_dssp EEEEECCTTCEEEEETTEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred cccEEcCCCCEEEEeCCEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEcc---
Confidence 5799999998 6999999999988 4 2 2578899999999999999999999999999999999
Q ss_pred ceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEEeec
Q psy7621 76 CAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAYAHF 155 (247)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ahf 155 (247)
||.|+|+++|+||
T Consensus 80 -------------------------------------------------------------------Gf~~~L~ivGvGy 92 (178)
T 1vq8_E 80 -------------------------------------------------------------------GWEYGMEVFYSHF 92 (178)
T ss_dssp -------------------------------------------------------------------CEEEEEEEECSSS
T ss_pred -------------------------------------------------------------------CeEEEEEEEeeCC
Confidence 9999999999999
Q ss_pred CceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccccccccceeeeeceEE
Q psy7621 156 PINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFLDGLY 235 (247)
Q Consensus 156 pi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~~K~KdiRkFlDGiY 235 (247)
||++..+ |+.|+||||||||||+.++||+||+++.++ |+|+|+|+|+|.|+|+||.||++++.||||||+|+||+|
T Consensus 93 pira~~~--g~~l~l~N~LG~shpv~~~ip~gi~v~v~~--~~I~v~G~Dkq~Vgq~AA~Ir~~r~pKGKGIr~F~DGiy 168 (178)
T 1vq8_E 93 PMQVNVE--GDEVVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVY 168 (178)
T ss_dssp CCEEEEE--TTEEEEESGGGCSSCEEEECCTTCEEEEET--TEEEEEESCHHHHHHHHHHHHHTTCCSSSCTTTCCCEEE
T ss_pred ceEEEEc--CCEEEEEccccccccEEEeCCCCeEEEEeC--CEEEEEECCHHHHHHHHHHHhccCCCCCCceeEEECCEE
Confidence 9999776 556999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred EeeeeeeecC
Q psy7621 236 VSEKTTVVTD 245 (247)
Q Consensus 236 vsek~~vqq~ 245 (247)
|+||++..++
T Consensus 169 i~~k~~~~~~ 178 (178)
T 1vq8_E 169 ITRKPNRGDA 178 (178)
T ss_dssp EEECC-----
T ss_pred EEecccccCC
Confidence 9999987653
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=5.4e-48 Score=322.91 Aligned_cols=156 Identities=19% Similarity=0.173 Sum_probs=144.2
Q ss_pred eee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621 7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71 (247)
Q Consensus 7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt 71 (247)
||| |+.|++||++| +|+||+|+|.++++. . .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus 1 mSrigk~pI~IP~gV~v~i~~~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt 80 (180)
T 3v2d_H 1 MSRIGRLPIPVPKGVSVEVAPGRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVS 80 (180)
T ss_dssp -CCTTTSCEECCTTCEEEEETTEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCceeeCCCCcEEEEeCCEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeec
Confidence 899 99999999999 699999999998872 2 47899999999999999999999999999999999
Q ss_pred ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621 72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA 151 (247)
Q Consensus 72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~ 151 (247)
+ ||.|+|+++
T Consensus 81 ~----------------------------------------------------------------------Gf~~kL~lv 90 (180)
T 3v2d_H 81 E----------------------------------------------------------------------GYSKELLIK 90 (180)
T ss_dssp T----------------------------------------------------------------------CEEEEEEEE
T ss_pred C----------------------------------------------------------------------CcEEEEEEE
Confidence 9 999999999
Q ss_pred EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhcccc---cccccee
Q psy7621 152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIR 228 (247)
Q Consensus 152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~~---~K~KdiR 228 (247)
|+|||+++ +|+.|+| |||||||++++||+||+++.++ +|+|+|+|+|+|.|+|+||+||++++ |||||||
T Consensus 91 gvgyra~~----~g~~l~l--~LG~sh~v~~~ip~gv~v~v~~-~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGKGIr 163 (180)
T 3v2d_H 91 GIGYRARL----VGRALEL--TVGFSHPVVVEPPEGITFEVPE-PTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIY 163 (180)
T ss_dssp STTCEEEE----ETTEEEE--ECSSSSCEEECCCTTCEEECSS-TTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSCEEE
T ss_pred EEeeEEEE----CCCEEEE--EecCCeeEEEECCCCeEEEECC-CCEEEEEECcHHHHHHHHHHhcccCCCCCcCCCccc
Confidence 99999644 3788999 7999999999999999999994 59999999999999999999999986 9999999
Q ss_pred eeeceEEEeeeee
Q psy7621 229 KFLDGLYVSEKTT 241 (247)
Q Consensus 229 kFlDGiYvsek~~ 241 (247)
. ||.||.+|.-
T Consensus 164 y--~~e~I~~K~g 174 (180)
T 3v2d_H 164 Y--AGEPVRLKPG 174 (180)
T ss_dssp E--TTCCCCCCCC
T ss_pred C--CCEEEEEeCc
Confidence 7 9999998863
No 8
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=1.4e-44 Score=301.43 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=136.3
Q ss_pred ee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621 8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72 (247)
Q Consensus 8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk 72 (247)
|| ++.|++||++| +|+||+|+|.++++. . .++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus 1 Srigk~pI~IP~gV~v~i~~~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~ 80 (176)
T 3r8s_G 1 SRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80 (176)
T ss_dssp CTTTTSCEECCTTCCCEESSSEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHH
T ss_pred CCccccceeCCCCcEEEEeCCEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhccc
Confidence 56 89999999998 699999999998872 2 478899999999999999999999999999999999
Q ss_pred cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621 73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY 152 (247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ 152 (247)
||.|+|+++|
T Consensus 81 ----------------------------------------------------------------------Gf~~kL~lvg 90 (176)
T 3r8s_G 81 ----------------------------------------------------------------------GFTKKLQLVG 90 (176)
T ss_dssp ----------------------------------------------------------------------CEEECEEEES
T ss_pred ----------------------------------------------------------------------CeEEEEEEee
Confidence 9999999999
Q ss_pred eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccceee
Q psy7621 153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIRK 229 (247)
Q Consensus 153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiRk 229 (247)
+|||+++ +|+.|+ +||||||+++++||+||+++.+ ++|+|+|+|+|+|.|||+||+||+.+ ||||||||
T Consensus 91 vgyra~~----~g~~l~--l~LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKGI~- 162 (176)
T 3r8s_G 91 VGYRAAV----KGNVIN--LSLGFSHPVDHQLPAGITAECP-TQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVR- 162 (176)
T ss_dssp TTCEEEC----SSSEEE--EECSSSSCEEEECCTTCEEEEE-ETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCEEE-
T ss_pred eeeEEEe----CCCEEE--EEecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCcee-
Confidence 9999655 467776 5899999999999999999999 58999999999999999999999997 89999998
Q ss_pred eeceEEEe
Q psy7621 230 FLDGLYVS 237 (247)
Q Consensus 230 FlDGiYvs 237 (247)
..|.+|-
T Consensus 163 -y~~E~i~ 169 (176)
T 3r8s_G 163 -YADEVVR 169 (176)
T ss_dssp -ESSCCCC
T ss_pred -ECCeEEE
Confidence 4444443
No 9
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=1.6e-42 Score=298.54 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=142.5
Q ss_pred eeeee-cceeeeeCCCc---------EEeeCCeEEEEEEE----ee-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccc
Q psy7621 5 TFMIY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----YR-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKG 69 (247)
Q Consensus 5 ~fMsr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikG 69 (247)
+=||| ++.||+||++| +|+||+|+|.++++ +. .++.+.|+.++++|+++|+|||+||||+||++|
T Consensus 26 ~~MSRIgk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~G 105 (212)
T 1nkw_E 26 DNMSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKG 105 (212)
T ss_pred cccccccccceecCCCcEEEEeCCEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEe
Confidence 34999 99999999998 69999999998886 22 578899999999999999999999999999999
Q ss_pred ccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEE
Q psy7621 70 VTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMR 149 (247)
Q Consensus 70 Vtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr 149 (247)
||+ ||.|+|+
T Consensus 106 Vt~----------------------------------------------------------------------Gf~kkLe 115 (212)
T 1nkw_E 106 VSD----------------------------------------------------------------------GYTINLE 115 (212)
T ss_pred ecc----------------------------------------------------------------------CeEEEEE
Confidence 999 9999999
Q ss_pred EEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccc
Q psy7621 150 AAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKD 226 (247)
Q Consensus 150 ~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~Kd 226 (247)
++|+|||+++ +|+.|+| ||||||++.++||+||++++++ +|+|+|+|+|+|.|+|+||.||+.+ ||||||
T Consensus 116 lvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~-~t~Iiv~GiDKq~VGq~AA~IR~~R~PEPYKGKG 188 (212)
T 1nkw_E 116 LRGVGFRAKL----TGKALEM--NIGYSHPVIIEPPAGVTFAVPE-PTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKG 188 (212)
T ss_pred EeeeeeEEEc----CCCEEEE--EccCCccEEEECCCCeEEEeCC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCc
Confidence 9999999764 5888999 7999999999999999999995 5999999999999999999999996 899999
Q ss_pred eeeeeceEEEeeee
Q psy7621 227 IRKFLDGLYVSEKT 240 (247)
Q Consensus 227 iRkFlDGiYvsek~ 240 (247)
|| ..|.+|--|.
T Consensus 189 Ir--y~~E~I~rK~ 200 (212)
T 1nkw_E 189 VR--FVGEQIALKA 200 (212)
T ss_pred Ee--ECCeEEEEcC
Confidence 98 6777776553
No 10
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=7.8e-43 Score=291.52 Aligned_cols=153 Identities=22% Similarity=0.237 Sum_probs=133.8
Q ss_pred ee-cceeeeeCCCc---------EEeeCCeEEEEEEE----e-eeCCEEEEEecCCChhhhhhHhhHHHHHhhhcccccc
Q psy7621 8 IY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----Y-RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72 (247)
Q Consensus 8 sr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~-~~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVtk 72 (247)
|| |+.|++||++| +|+||+|+|.++++ + ..++.+.|+.++++|+++|+|||+||||+||++|||+
T Consensus 1 srigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~ 80 (177)
T 1rl6_A 1 SRVGKKPIEIPAGVTVTVNGNTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 80 (177)
T ss_dssp ------CEECCTTCEEEEETTEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccceEcCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcC
Confidence 56 89999999998 69999999998887 2 2578899999999999999999999999999999999
Q ss_pred cccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEEE
Q psy7621 73 VKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAAY 152 (247)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~~ 152 (247)
||.|+|+++|
T Consensus 81 ----------------------------------------------------------------------Gf~~~L~lvG 90 (177)
T 1rl6_A 81 ----------------------------------------------------------------------GYEKALELVG 90 (177)
T ss_dssp ----------------------------------------------------------------------CEEEEEEEES
T ss_pred ----------------------------------------------------------------------CcEEEEEEEe
Confidence 9999999999
Q ss_pred eecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---cccccceee
Q psy7621 153 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIRK 229 (247)
Q Consensus 153 ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiRk 229 (247)
+|||++. +|+.|+| +|||||++.++||+||++++++ +|+|+|+|+|+|.|+|+||.||+.+ ||||||||
T Consensus 91 vGyra~~----~G~~l~l--~LG~Shpv~~~iP~gi~v~v~~-~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKGI~- 162 (177)
T 1rl6_A 91 VGYRASK----QGKKLVL--SVGYSHPVEIEPEEGLEIEVPS-QTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIR- 162 (177)
T ss_dssp TTCEEEE----ETTEEEE--ESSSSSCEEECCCTTEEEEEEE-TTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCEEE-
T ss_pred eceEEEe----cCCEEEE--EecCCccEEEeCCCCcEEEECC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEe-
Confidence 9999764 4788999 7999999999999999999995 5999999999999999999999996 89999998
Q ss_pred eeceEEEeee
Q psy7621 230 FLDGLYVSEK 239 (247)
Q Consensus 230 FlDGiYvsek 239 (247)
..|.+|--|
T Consensus 163 -y~~E~i~~K 171 (177)
T 1rl6_A 163 -YEGELVRLK 171 (177)
T ss_dssp -ETTCCCCC-
T ss_pred -ECCeEEEEc
Confidence 555555433
No 11
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=1e-43 Score=299.21 Aligned_cols=154 Identities=19% Similarity=0.219 Sum_probs=136.0
Q ss_pred eee-cceeeeeCCCc---------EEeeCCeEEEEEEEe----e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhccccc
Q psy7621 7 MIY-QSFFYEIPPDL---------NPGGGGGCLYLNKTY----R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVT 71 (247)
Q Consensus 7 Msr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~~----~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMikGVt 71 (247)
||| ++.|++||++| +|+||+|+|.++++. . .++.+.|+.++++|+++|+|||+||||+||++|||
T Consensus 1 mSrigk~pI~IP~gV~V~i~~~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt 80 (185)
T 2zjr_E 1 MSRIGKQPIAVPSGVTVNAQDGVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVS 80 (185)
T ss_dssp ----CCCCBCCCTTCCEECCTTCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeec
Confidence 899 99999999988 799999999988762 1 46779999899999999999999999999999999
Q ss_pred ccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEEEEE
Q psy7621 72 KVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKMRAA 151 (247)
Q Consensus 72 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykmr~~ 151 (247)
+ ||.|+|+++
T Consensus 81 ~----------------------------------------------------------------------Gf~kkL~lv 90 (185)
T 2zjr_E 81 D----------------------------------------------------------------------GYTINLELR 90 (185)
T ss_dssp H----------------------------------------------------------------------CEEEEEECB
T ss_pred c----------------------------------------------------------------------CcEEEEEEe
Confidence 9 999999999
Q ss_pred EeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccccee
Q psy7621 152 YAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIR 228 (247)
Q Consensus 152 ~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~KdiR 228 (247)
|+|||+++ +|+.|+| +||||||+.++||+||++++++ +|+|+|+|+|+|.|+|+||+||+.+ ||||||||
T Consensus 91 GvGYra~~----~G~~l~l--~LG~Shpv~~~iP~gI~v~v~~-~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGKGI~ 163 (185)
T 2zjr_E 91 GVGFRAKL----TGKALEM--NIGYSHPVIIEPPAGVTFAVPE-PTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVR 163 (185)
T ss_dssp STTCCCCC----BTTBCBC--CSSCSSCCBCCCCTTEEEECSS-TTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBCC
T ss_pred eeccEEEE----cCCEEEE--EeeCCccEEEECCCCeEEEECC-CCEEEEEecCHHHHHHHHHHHhccCCCCCcCCCcEe
Confidence 99999765 4777888 8999999999999999999995 5999999999999999999999996 89999998
Q ss_pred eeeceEEEeee
Q psy7621 229 KFLDGLYVSEK 239 (247)
Q Consensus 229 kFlDGiYvsek 239 (247)
..|.+|--|
T Consensus 164 --y~~E~i~~K 172 (185)
T 2zjr_E 164 --FVGEQIALK 172 (185)
T ss_dssp --CSSCCCCCC
T ss_pred --ECCeEEEEc
Confidence 555555433
No 12
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.4e-42 Score=300.42 Aligned_cols=156 Identities=18% Similarity=0.187 Sum_probs=140.6
Q ss_pred eeeee-cceeeeeCCCc---------EEeeCCeEEEEEEE----e-e-eCCEEEEEecCCChhhhhhHhhHHHHHhhhcc
Q psy7621 5 TFMIY-QSFFYEIPPDL---------NPGGGGGCLYLNKT----Y-R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLK 68 (247)
Q Consensus 5 ~fMsr-gK~~ieIP~~v---------~v~Gp~G~L~l~~~----~-~-~~~~~~V~~~~~~kk~~a~~gTv~S~I~NMik 68 (247)
+-||| |+.||+||++| +|+||+|+|.++++ + . .++.+.|+.++++|+++|+|||+||||+||++
T Consensus 41 ~~mSrigk~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~ 120 (223)
T 3bbo_I 41 CKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVV 120 (223)
T ss_dssp -CCCCCCCCCCCCSTTSCEEESSSEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHH
T ss_pred cccccccccceecCCCCEEEEeCCEEEEECCCeEEEEEcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEE
Confidence 35999 99999999998 79999999998886 3 3 46789999999999999999999999999999
Q ss_pred cccccccceeeeehhhhhhhhhhhhccceeeeecchhHHHHHHHhhhhhccccceEEEEeeecccCceeeeeccceEEEE
Q psy7621 69 GVTKVKDCAVKVQQSTLDLLCEFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGGFVCISFTGFLYKM 148 (247)
Q Consensus 69 GVtk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gf~ykm 148 (247)
|||+ ||.|+|
T Consensus 121 GVt~----------------------------------------------------------------------Gf~kkL 130 (223)
T 3bbo_I 121 GVSK----------------------------------------------------------------------GFEKKL 130 (223)
T ss_dssp HTTT----------------------------------------------------------------------CEEECE
T ss_pred eecc----------------------------------------------------------------------CcEEEE
Confidence 9999 999999
Q ss_pred EEEEeecCceeeeccCCCeeEEecccCceeeEEEeCCCCeEEEecCCCCeEEEEeccHhHHhHHHHhhhccc---ccccc
Q psy7621 149 RAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNK 225 (247)
Q Consensus 149 r~~~ahfpi~~~~~en~~~leirnfLGek~~~~vkmp~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~---~~K~K 225 (247)
+++|+|||+++ +|+.|+| +||||||+.++||+||++++++ +|+|+|+|+|+|.|+|+||+||+.+ |||||
T Consensus 131 elvGvGYra~~----~G~~L~L--~LG~SHpv~~~iP~GI~v~v~~-~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYKGK 203 (223)
T 3bbo_I 131 ILVGVGYRATV----DGKELVL--NLGFSHPVKMQIPDSLKVKVEE-NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGK 203 (223)
T ss_dssp ECCSTTCCEEE----CSSEEEE--CSSCSSCEEEECCSSEEEECSS-TTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCC
T ss_pred EEeeeceEEEe----cCCEEEE--EeeCCccEEEECCCCeEEEeCC-CCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCC
Confidence 99999999764 5888999 8999999999999999999985 5999999999999999999999996 89999
Q ss_pred ceeeeeceEEEeee
Q psy7621 226 DIRKFLDGLYVSEK 239 (247)
Q Consensus 226 diRkFlDGiYvsek 239 (247)
||| ..|.+|--|
T Consensus 204 GI~--y~~E~I~rK 215 (223)
T 3bbo_I 204 GVK--YSDEIVRRK 215 (223)
T ss_dssp SCE--ETTCCCCCC
T ss_pred cEe--ECCeEEEEe
Confidence 998 455555443
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.65 E-value=7.9e-17 Score=124.11 Aligned_cols=71 Identities=35% Similarity=0.453 Sum_probs=60.5
Q ss_pred cceeeee--cceeeeeCCCc---------EEeeCCeEEEEEEEe---e---eCCE---EEEEecCCChhhhhhHhhHHHH
Q psy7621 3 GHTFMIY--QSFFYEIPPDL---------NPGGGGGCLYLNKTY---R---WEET---FDVDCDNGTKKEIAAVRTVCSH 62 (247)
Q Consensus 3 g~~fMsr--gK~~ieIP~~v---------~v~Gp~G~L~l~~~~---~---~~~~---~~V~~~~~~kk~~a~~gTv~S~ 62 (247)
|-.-|.+ .+.||+||++| +|+||+|+|.+++++ . .++. +.|+.++++|+++|+|||+|||
T Consensus 4 ~~~~Mk~i~~k~pI~IP~gV~V~i~~~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~Rsl 83 (100)
T 2cql_A 4 GSSGMKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSH 83 (100)
T ss_dssp CCSSCCCCCCCEEECCCSSCEEEEETTEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHH
T ss_pred CCcccccccccCcEEcCCCCEEEEeCCEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHH
Confidence 3344766 59999999998 699999999999872 1 3444 9999999999999999999999
Q ss_pred Hhhhccccccc
Q psy7621 63 ISNMLKGVTKV 73 (247)
Q Consensus 63 I~NMikGVtk~ 73 (247)
|+||++|||++
T Consensus 84 I~NMI~GVt~G 94 (100)
T 2cql_A 84 VQNMIKGVTLG 94 (100)
T ss_dssp HHHHHHHHHTS
T ss_pred HHhhhEeecCC
Confidence 99999999993
No 14
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=59.62 E-value=9.1 Score=29.04 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=17.0
Q ss_pred EEeCCCCeEEEecCCCCeEEEEecc
Q psy7621 181 RVKMAPGVKVSNSKQKDELIIEGND 205 (247)
Q Consensus 181 ~vkmp~GVkvs~~kqkdeliIeG~D 205 (247)
.+++|+||+|+.. ...+.++|.-
T Consensus 16 pI~IP~gV~V~i~--~~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLK--GRTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEE--TTEEEEEETT
T ss_pred cEEcCCCCEEEEe--CCEEEEECCC
Confidence 5678888888875 3678888864
No 15
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=48.58 E-value=25 Score=26.21 Aligned_cols=33 Identities=27% Similarity=0.458 Sum_probs=26.4
Q ss_pred CCeEEEecCCCCeEEEEeccHhHHhHHHHhhhcc
Q psy7621 186 PGVKVSNSKQKDELIIEGNDIENVSRSAALIQQS 219 (247)
Q Consensus 186 ~GVkvs~~kqkdeliIeG~D~e~V~~~AA~Iqq~ 219 (247)
+++.+..|+..|.+.|+|. ++.|...-+.|++.
T Consensus 57 ~~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 57 PKVHIEFTEGEDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSSEEEECSSSCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCEEEEECC-HHHHHHHHHHHHHH
Confidence 4677777656789999999 99999888888764
No 16
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=35.27 E-value=35 Score=28.60 Aligned_cols=34 Identities=6% Similarity=0.001 Sum_probs=16.3
Q ss_pred CCeEEEecCCCCeEEEEecc--H---hHHhHHHHhhhcc
Q psy7621 186 PGVKVSNSKQKDELIIEGND--I---ENVSRSAALIQQS 219 (247)
Q Consensus 186 ~GVkvs~~kqkdeliIeG~D--~---e~V~~~AA~Iqq~ 219 (247)
+.|+++..+.+++|.++=.+ + ...+-..|+|+..
T Consensus 41 ~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~Nm 79 (190)
T 3iz5_F 41 LNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNL 79 (190)
T ss_dssp TTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhh
Confidence 34555543234556665332 2 2344555666554
No 17
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=35.11 E-value=35 Score=28.60 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=5.7
Q ss_pred HhHHHHhhhcc
Q psy7621 209 VSRSAALIQQS 219 (247)
Q Consensus 209 V~~~AA~Iqq~ 219 (247)
.+-..|+|+..
T Consensus 68 ~gt~rsli~Nm 78 (191)
T 3u5e_H 68 LRTVKSLVDNM 78 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 44555555544
No 18
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.97 E-value=36 Score=28.43 Aligned_cols=11 Identities=27% Similarity=0.142 Sum_probs=6.0
Q ss_pred HhHHHHhhhcc
Q psy7621 209 VSRSAALIQQS 219 (247)
Q Consensus 209 V~~~AA~Iqq~ 219 (247)
++-..|+|+..
T Consensus 68 ~gt~rsli~Nm 78 (184)
T 3j21_F 68 ARTFAAHIRNM 78 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 45555666554
No 19
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=33.88 E-value=38 Score=28.19 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=19.0
Q ss_pred eC-CCCeEEEecCCCCeEEEEe--ccH---hHHhHHHHhhhcc
Q psy7621 183 KM-APGVKVSNSKQKDELIIEG--NDI---ENVSRSAALIQQS 219 (247)
Q Consensus 183 km-p~GVkvs~~kqkdeliIeG--~D~---e~V~~~AA~Iqq~ 219 (247)
.+ ++.++++.. .++|.++= .++ ...+-..|+|+..
T Consensus 33 ~~~~~~v~i~~~--~~~i~v~~~~~~k~~~a~~Gt~rsli~Nm 73 (178)
T 1vq8_E 33 RLWYPDIDVSVD--GDTVVIESDEDNAKTMSTIGTFQSHIENM 73 (178)
T ss_dssp ECCCTTCEEEEE--TTEEEEECSCCSHHHHHHHHHHHHHHHHH
T ss_pred EEECCeEEEEEE--CCEEEEEcCCCCHHHHHHHHHHHHHHcCE
Confidence 45 666666654 35566652 122 3455666666654
No 20
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=32.13 E-value=36 Score=28.49 Aligned_cols=11 Identities=18% Similarity=0.205 Sum_probs=6.1
Q ss_pred HhHHHHhhhcc
Q psy7621 209 VSRSAALIQQS 219 (247)
Q Consensus 209 V~~~AA~Iqq~ 219 (247)
++-..|+|+..
T Consensus 68 ~gt~rsli~Nm 78 (188)
T 4a17_E 68 LQSIASQIKNM 78 (188)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 45555666554
No 21
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=31.32 E-value=38 Score=28.05 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=5.1
Q ss_pred HhHHHHhhhcc
Q psy7621 209 VSRSAALIQQS 219 (247)
Q Consensus 209 V~~~AA~Iqq~ 219 (247)
.+-..|+|+..
T Consensus 64 ~Gt~rsli~Nm 74 (177)
T 1rl6_A 64 HGTTRSLLANM 74 (177)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhCE
Confidence 33445555443
No 22
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.27 E-value=32 Score=28.86 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=17.8
Q ss_pred eCCC-CeEEEecCCCCe---EEEEec--cH---hHHhHHHHhhhcc
Q psy7621 183 KMAP-GVKVSNSKQKDE---LIIEGN--DI---ENVSRSAALIQQS 219 (247)
Q Consensus 183 kmp~-GVkvs~~kqkde---liIeG~--D~---e~V~~~AA~Iqq~ 219 (247)
.+|+ .+++...+ ++ |.++=. ++ ...+-..|+|+..
T Consensus 37 ~~~~~~v~i~~~~--~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nm 80 (192)
T 2zkr_e 37 DFNHINVELSLLG--KKKKRLRVDKWWGNRKELATVRTICSHVQNM 80 (192)
T ss_dssp ECCSSSCEEEEET--TTTCEEEEECSCCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEec--CceeEEEEEcCCCCHHHHHHHHHHHHHHhCE
Confidence 4555 66666542 33 666521 22 2455566666654
No 23
>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=30.80 E-value=22 Score=27.18 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=14.1
Q ss_pred CCcceeeee-cceeeee
Q psy7621 1 MCGHTFMIY-QSFFYEI 16 (247)
Q Consensus 1 m~g~~fMsr-gK~~ieI 16 (247)
|.||+|.++ |+.++++
T Consensus 44 mVG~ti~VhNGK~fv~V 60 (92)
T 3bbn_S 44 MIGHTIAIHNGREHLPI 60 (92)
T ss_dssp CTTCCEEEECSSCEEEE
T ss_pred hcCcEEEEecCceEEEE
Confidence 789999999 9988765
No 24
>3r8n_S 30S ribosomal protein S19; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_S 3fih_S* 3j18_S* 2wwl_S 3oar_S 3oaq_S 3ofb_S 3ofa_S 3ofp_S 3ofx_S 3ofy_S 3ofo_S 3r8o_S 4a2i_S 4gd1_S 4gd2_S 2gy9_S 2gyb_S
Probab=29.23 E-value=20 Score=26.71 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=13.9
Q ss_pred CCcceeeee-cceeeee
Q psy7621 1 MCGHTFMIY-QSFFYEI 16 (247)
Q Consensus 1 m~g~~fMsr-gK~~ieI 16 (247)
|.||+|.++ |+.++++
T Consensus 42 mVG~ti~VyNGk~f~~V 58 (79)
T 3r8n_S 42 MIGLTIAVHNGRQHVPV 58 (79)
T ss_dssp TTTCCEEEECSSSEECC
T ss_pred HCCCEEEEECCCeeEEE
Confidence 789999999 9888754
No 25
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=28.49 E-value=41 Score=27.87 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=6.0
Q ss_pred HhHHHHhhhcc
Q psy7621 209 VSRSAALIQQS 219 (247)
Q Consensus 209 V~~~AA~Iqq~ 219 (247)
++-+.++|+..
T Consensus 65 ~gt~rsli~Nm 75 (180)
T 3v2d_H 65 HGLTRTLIANA 75 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 44555666554
No 26
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=28.05 E-value=23 Score=27.13 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.8
Q ss_pred CCcceeeee-cceeeee
Q psy7621 1 MCGHTFMIY-QSFFYEI 16 (247)
Q Consensus 1 m~g~~fMsr-gK~~ieI 16 (247)
|.||+|.++ |+.++++
T Consensus 44 mVG~ti~VhNGK~fv~V 60 (93)
T 3a1p_B 44 MVGHTIAVYNGKQHVPV 60 (93)
T ss_dssp GTTCEEEEECSSSEEEE
T ss_pred hcCcEEEEecCceEEEE
Confidence 789999999 8888765
No 27
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=27.78 E-value=26 Score=27.07 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=25.4
Q ss_pred CeEEEEe---ccHhHHhHHHHhhhccccccccceeeeec
Q psy7621 197 DELIIEG---NDIENVSRSAALIQQSTTVKNKDIRKFLD 232 (247)
Q Consensus 197 deliIeG---~D~e~V~~~AA~Iqq~~~~K~KdiRkFlD 232 (247)
-.||+.= .|+|.+-+.|..-+ .-+|||+-||-+.|
T Consensus 63 RhIIvK~~~~~~KErILkaar~k~-~vtykg~pirlsaD 100 (100)
T 2w7a_A 63 RHIIVRFTKVEMKEKMLRAAREKG-RVTLKGKPIRLTVD 100 (100)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHC-CEEETTEEEEEEEC
T ss_pred CeEEEEecccccHHHHHHHHHHhC-ceeeCCcceeecCC
Confidence 4466554 58899998665543 46899999998766
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=24.54 E-value=98 Score=21.61 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=17.2
Q ss_pred EEEEeccHhHHhHHHHhhhcc
Q psy7621 199 LIIEGNDIENVSRSAALIQQS 219 (247)
Q Consensus 199 liIeG~D~e~V~~~AA~Iqq~ 219 (247)
+.|.| |.+.+......|+..
T Consensus 63 v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 63 LRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp EEEEE-CHHHHHHHHHHHHHH
T ss_pred EEEEe-CHHHHHHHHHHHHHH
Confidence 99999 999999888888654
No 29
>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...
Probab=24.07 E-value=26 Score=26.79 Aligned_cols=16 Identities=19% Similarity=0.193 Sum_probs=13.9
Q ss_pred CCcceeeee-cceeeee
Q psy7621 1 MCGHTFMIY-QSFFYEI 16 (247)
Q Consensus 1 m~g~~fMsr-gK~~ieI 16 (247)
|.||+|.++ |+.++++
T Consensus 44 mVG~ti~VyNGK~fv~V 60 (92)
T 3i1m_S 44 MIGLTIAVHNGRQHVPV 60 (92)
T ss_dssp GSSCCCEEECSSSEEEC
T ss_pred HCCCEEEEEcCceEEEE
Confidence 789999999 8888764
No 30
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=20.08 E-value=60 Score=24.43 Aligned_cols=43 Identities=16% Similarity=0.376 Sum_probs=31.9
Q ss_pred eeEEEeCCCCeE-EEecCCCCeEEEEeccHhHHhHHHHhhhccc
Q psy7621 178 YIRRVKMAPGVK-VSNSKQKDELIIEGNDIENVSRSAALIQQST 220 (247)
Q Consensus 178 ~~~~vkmp~GVk-vs~~kqkdeliIeG~D~e~V~~~AA~Iqq~~ 220 (247)
.++.+.--.|++ +....+...+.|.|.|.|.+.+.-+.|....
T Consensus 36 ~Ik~I~e~tGv~~IdI~eddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 36 NIQQARKVPGVTAIELDEDTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp HHHHHHTSTTEEEEEEETTTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhCCeEEEEEcCCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 333333344998 8887545789999999999988888887654
Done!