RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7621
(247 letters)
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 93
Score = 156 bits (396), Expect = 9e-50
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 144 FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 203
+ Y M Y+HFP+ + + I NFLGEK RR + V +EL + G
Sbjct: 1 WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56
Query: 204 NDIENVSRSAALIQQSTTVKNKDIRKFLDGLYVSEK 239
DIE V ++AA I+Q T + +KD+R F DG+Y++ K
Sbjct: 57 PDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 92
>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 41.4 bits (97), Expect = 6e-06
Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 43 VDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
VD G +KE+A VRT+CSH+ NM+KGVT
Sbjct: 57 VDKWWGNRKELATVRTICSHVQNMIKGVTL 86
>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
thermophilus [TaxId: 274]}
Length = 71
Score = 39.8 bits (93), Expect = 1e-05
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
E V+ + ++ + + I+N +KGV++
Sbjct: 36 EGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSE 70
>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 78
Score = 36.7 bits (85), Expect = 2e-04
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
+ V+ + +K A + ++N +KGV+
Sbjct: 43 GDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSD 77
>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 75
Score = 36.7 bits (85), Expect = 2e-04
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
V + K A T S ++NM++GV+K
Sbjct: 40 GNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSK 74
>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
[TaxId: 562]}
Length = 81
Score = 35.5 bits (82), Expect = 6e-04
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 38 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTK 72
+ T +G A T + +++M+ GVT+
Sbjct: 46 DNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTE 80
>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 79
Score = 34.5 bits (79), Expect = 0.001
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 45 CDNGTKKEIAAVRTVCSHISNMLKGVTK 72
D K ++ + T SHI NM GVT+
Sbjct: 51 SDEDNAKTMSTIGTFQSHIENMFHGVTE 78
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 28.4 bits (63), Expect = 0.18
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 26 GGCLYLNKTYRWEETFDVD------CDNGTKKEIAAVRTVCSHISNMLKGVTKVKDC 76
G C+ + Y ++ + + CD G + +C + + L +C
Sbjct: 8 GSCVQDGQRYNDKDVWKPEPCRICVCDTG---TVLCDDIICEDVKDCLSPEIPFGEC 61
>d1dkia_ d.3.1.1 (A:) Streptococcal pyrogenic exotoxin B
{Streptococcus pyogenes [TaxId: 1314]}
Length = 335
Score = 28.5 bits (63), Expect = 0.83
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 3/119 (2%)
Query: 30 YLNKTYRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKVKDCAVKVQQSTLDLLC 89
+ Y W + + A+ + + + + + + L
Sbjct: 172 ISTRQYNWNNILPTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKE 231
Query: 90 EFLWNVSLVLCTRNTLAQVFLLALVLCMSVEKSFIVVYQKYTSTGG--FVCISFTGFLY 146
F +N S+ R ++ A + + ++ V YQ GG FV G +
Sbjct: 232 NFGYNQSVHQINRGDFSKQDWEAQID-KELSQNQPVYYQGVGKVGGHAFVIDGADGRNF 289
>d3bdwa1 d.169.1.1 (A:59-179) CD94 {Human (Homo sapiens) [TaxId:
9606]}
Length = 121
Score = 26.9 bits (58), Expect = 1.1
Identities = 5/38 (13%), Positives = 10/38 (26%), Gaps = 3/38 (7%)
Query: 10 QSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
+ + P C+ N D C++
Sbjct: 76 SALSQYLFPSFETFNTKNCIAYNPNGNA---LDESCED 110
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
C-terminal domain {Pseudomonas fluorescens [TaxId:
294]}
Length = 70
Score = 25.8 bits (57), Expect = 1.5
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 7/41 (17%)
Query: 49 TKKEIAA-----VRTVCSHISNMLK--GVTKVKDCAVKVQQ 82
K+IA TV H N+++ V + + V++
Sbjct: 29 MNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEK 69
>d2msba_ d.169.1.1 (A:) Mannose-binding protein A, C-lectin domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 112
Score = 26.5 bits (57), Expect = 1.9
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 1 MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
+ Y ++ + P + G G C+ + W D+ C
Sbjct: 62 YVTGGRLTYSNWKKDEPN--DHGSGEDCVTIVDNGLW---NDISCQA 103
>d1r13a1 d.169.1.1 (A:110-228) Surfactant protein, lectin domain
{Rat (Rattus norvegicus), SP-A [TaxId: 10116]}
Length = 119
Score = 25.4 bits (54), Expect = 4.0
Identities = 7/47 (14%), Positives = 12/47 (25%), Gaps = 5/47 (10%)
Query: 1 MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
+ + +Y P G C+ + W D C
Sbjct: 70 HYLDGASVSYTNWYPGEP--RGQGKEKCVEMYTDGTW---NDRGCLQ 111
>d1t8da1 d.169.1.1 (A:1-143) Low affinity immunoglobulin epsilon Fc
receptor {Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 25.7 bits (55), Expect = 4.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 10 QSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
S + P + G C+ + + RW D CD
Sbjct: 87 YSNWAPGEPT-SRSQGEDCVMMRGSGRW---NDAFCDR 120
>d1pwba1 d.169.1.1 (A:235-355) Surfactant protein, lectin domain
{Human (Homo sapiens), SP-D [TaxId: 9606]}
Length = 121
Score = 25.0 bits (53), Expect = 5.2
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 4/47 (8%)
Query: 1 MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
+ S + P+ + GG C+ + +W D C
Sbjct: 71 TYPTGESLVYSNWAPGEPN-DDGGSEDCVEIFTNGKW---NDRACGE 113
>d1l1na_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human
poliovirus 1 Mahoney [TaxId: 12081]}
Length = 180
Score = 25.5 bits (56), Expect = 5.6
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 192 NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIRKFL 231
+ D +E D + +I K +DIR +
Sbjct: 53 EVEILDAKALE--DQAGTNLEITIITLKRNEKFRDIRPHI 90
>d1jzna_ d.169.1.1 (A:) Galactose-specific C-type lectin {Western
diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]}
Length = 135
Score = 24.8 bits (52), Expect = 7.5
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 1 MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
+ + PD + C+ L + D C++
Sbjct: 80 EWTDRSCTDYLTWDKNQPD-HYQNKEFCVELVSLTGYRLWNDQVCES 125
>d1uv0a_ d.169.1.1 (A:) Pancreatitis-associated protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 140
Score = 24.7 bits (52), Expect = 7.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 21 NPGGGGGCLYLNKTYRWEETFDVDCDN 47
G C L+++ + D +C+
Sbjct: 104 TISSPGHCASLSRSTAFLRWKDYNCNV 130
>d1dv8a_ d.169.1.1 (A:) H1 subunit of the asialoglycoprotein
receptor {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 24.4 bits (51), Expect = 9.9
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 1 MCGHTFMIYQSFFYEIPPDLNPGGGGGCLYLNKTYRWEETFDVDCDN 47
F ++ + GGG C + RW D C
Sbjct: 75 DYETGFKNWRPEQPDDWYGHGLGGGEDCAHFTDDGRW---NDDVCQR 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.406
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 898,349
Number of extensions: 39795
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 20
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)