BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7622
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50882|RL9_DROME 60S ribosomal protein L9 OS=Drosophila melanogaster GN=RpL9 PE=1
SV=2
Length = 190
Score = 193 bits (491), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 97/122 (79%), Positives = 106/122 (86%), Gaps = 1/122 (0%)
Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
+ T V+ GTKKE+AAVRTVCSHI NM+KGVT GF YKMRA YAHFPINCVTSENNT+
Sbjct: 50 KRTLKVEKWFGTKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTV 109
Query: 84 LEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+EIRNFLGEKYIRRV+MAPGV V NS QKDELI+EGNDIE+VS SAALIQQSTTVKNKD
Sbjct: 110 IEIRNFLGEKYIRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKD 169
Query: 143 IH 144
I
Sbjct: 170 IR 171
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 OS=Spodoptera frugiperda GN=RpL9 PE=2 SV=1
Length = 190
Score = 189 bits (480), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 91/111 (81%), Positives = 102/111 (91%), Gaps = 1/111 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G+KKE+AAVRTVCSH+ NM+KGVTKGF YKMR+ YAHFPINCVT+E N+++EIRNFLGEK
Sbjct: 60 GSKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEK 119
Query: 94 YIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
YIRRVKMAPGV V NS KQKDELIIEGN +E+VS SAALIQQSTTVKNKDI
Sbjct: 120 YIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDI 170
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1
Length = 192
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M PGV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|Q3SYR7|RL9_BOVIN 60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1
Length = 192
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M PGV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 OS=Macaca fascicularis GN=RPL9 PE=2 SV=1
Length = 192
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 94/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A +RT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M PGV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|Q5R9Q7|RL9_PONAB 60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1
Length = 192
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 93/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M PGV S S+ QKDELI+ GNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9 OS=Mus musculus GN=Rpl9 PE=2 SV=2
Length = 192
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 93/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M GV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|P17077|RL9_RAT 60S ribosomal protein L9 OS=Rattus norvegicus GN=Rpl9 PE=1 SV=1
Length = 192
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/112 (72%), Positives = 93/112 (83%), Gaps = 1/112 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRNFLGEK
Sbjct: 62 GNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEK 121
Query: 94 YIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
YIRRV+M GV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 122 YIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIR 173
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1
Length = 192
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/122 (65%), Positives = 97/122 (79%), Gaps = 1/122 (0%)
Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
++ VD G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V E +L
Sbjct: 52 QKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSL 111
Query: 84 LEIRNFLGEKYIRRVKMAPGVKVS-NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+EIRNFLGEKYIRRV+M PGV + ++ QKDEL++EGNDIE VS SAALIQQ+TTVKNKD
Sbjct: 112 VEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKD 171
Query: 143 IH 144
I
Sbjct: 172 IR 173
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1
SV=1
Length = 189
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/111 (61%), Positives = 87/111 (78%), Gaps = 1/111 (0%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KE+AA+RTVCSHI NM+KGVT GF YKMR+ YAHFPIN + N +EIRNFLGEK
Sbjct: 60 GVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEK 119
Query: 94 YIRRVKMAPGVKVS-NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
+RRV + GV + ++ QKDE+++EGND++ VS++AA IQQST VK KDI
Sbjct: 120 IVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDI 170
>sp|P49210|RL9_ORYSJ 60S ribosomal protein L9 OS=Oryza sativa subsp. japonica GN=RPL9
PE=2 SV=3
Length = 190
Score = 139 bits (350), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Query: 27 FDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEI 86
VD GT++ +AA+RT SH+ N++ GVTKG+ YKMR YAHFPIN + +NT +EI
Sbjct: 54 LQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEI 113
Query: 87 RNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
RNFLGEK +R+V M GV + S K KDEL+++GNDIE VSRSAALI Q VKNKDI
Sbjct: 114 RNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDI 171
>sp|Q9SZX9|RL92_ARATH 60S ribosomal protein L9-2 OS=Arabidopsis thaliana GN=RPL9D PE=2
SV=1
Length = 194
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
+D G++K A++RT SH+ N++ GVT+GFLY+MR YAHFPIN NN +EIRN
Sbjct: 60 IDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMRFVYAHFPINASIDGNNKSIEIRN 119
Query: 89 FLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
FLGEK +R+V+M GVK+ S K KDE+I+EGNDIE VSRS ALI Q VK KDI
Sbjct: 120 FLGEKKVRKVEMLDGVKIVRSEKVKDEIILEGNDIELVSRSCALINQKCHVKKKDI 175
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9b PE=3 SV=1
Length = 189
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 33 NGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGE 92
+G++K A +RT S I+NM+ GVT+GF YKMR YAHFPIN +EN T++EIRNFLGE
Sbjct: 59 HGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGE 118
Query: 93 KYIRRVKMAPGVKVS-NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
+ R +K PGV VS +S KDE+IIEGN +ENVS+SAA I+Q V+NKDI
Sbjct: 119 RITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIR 171
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl9a PE=3 SV=1
Length = 190
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 85/112 (75%), Gaps = 1/112 (0%)
Query: 33 NGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGE 92
+G++K A +R+V S I+NM+ GVT+GF YKMR YAHFPIN +EN T++EIRNFLGE
Sbjct: 59 HGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGE 118
Query: 93 KYIRRVKMAPGVKVS-NSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
+ R +K PGV VS +S KDE+I+EGN +ENVS+SAA I+Q V+NKDI
Sbjct: 119 RITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDI 170
>sp|P49209|RL91_ARATH 60S ribosomal protein L9-1 OS=Arabidopsis thaliana GN=RPL9B PE=2
SV=3
Length = 194
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 1/116 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
+D GT+K A++RT SH+ N++ GVT+GF YKMR YAHFPIN + +EIRN
Sbjct: 60 IDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMRFVYAHFPINASIGGDGKSIEIRN 119
Query: 89 FLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
FLGEK +R+V+M GV + S K KDE++++GNDIE VSRS ALI Q VK KDI
Sbjct: 120 FLGEKKVRKVEMLDGVTIVRSEKVKDEIVLDGNDIELVSRSCALINQKCHVKKKDI 175
>sp|P30707|RL9_PEA 60S ribosomal protein L9 OS=Pisum sativum GN=RPL9 PE=2 SV=1
Length = 193
Score = 123 bits (308), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
+D G++K AA+RT SH+ N++ GVTKGF YKMR YA FPIN + +N +EIRN
Sbjct: 59 IDAWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRN 118
Query: 89 FLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
FLGEK +R+V + GV + S K KDE++++GNDIE VSRS ALI Q VK KDI
Sbjct: 119 FLGEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIR 175
>sp|Q54XI5|RL9_DICDI 60S ribosomal protein L9 OS=Dictyostelium discoideum GN=rpl9 PE=1
SV=2
Length = 188
Score = 113 bits (282), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 54/117 (46%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
VD G +K+IA ++T+ S I NM+ GVTKG+ YKMR YAHFPIN ++ ++EIRN
Sbjct: 55 VDLWFGNRKQIACIKTITSIIENMITGVTKGYEYKMRFVYAHFPINVAVTDGGRVVEIRN 114
Query: 89 FLGEKYIRRVKMAPGVK-VSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
F GEK +RR+++ G+ N K KDE+++ GN +E +S+S A IQ + +K KD+
Sbjct: 115 FFGEKIVRRIELLDGITCYRNEKAKDEIVLTGNSLELLSQSCATIQLRSAIKYKDVR 171
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9B PE=1 SV=1
Length = 191
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINC--VTSENNT 82
+ V NG +K +AA+RTV S + NM+ GVTKG+ YKMR YAHFPIN V +
Sbjct: 51 QLIKVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAK 110
Query: 83 LLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNK 141
+E+RNFLG+K IR V + GV + S KDE+++ GN +E+VS++AA +QQ V+NK
Sbjct: 111 FIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNK 170
Query: 142 DI 143
DI
Sbjct: 171 DI 172
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL9A PE=1 SV=2
Length = 191
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINC--VTSENNT 82
+ V NG +K +AA+RTV S + NM+ GVTKG+ YKMR YAHFPIN V +
Sbjct: 51 QLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAK 110
Query: 83 LLEIRNFLGEKYIRRVKMAPGVKVSNSKQ-KDELIIEGNDIENVSRSAALIQQSTTVKNK 141
+E+RNFLG+K IR V + GV + S KDE+++ GN +E+VS++AA +QQ V+NK
Sbjct: 111 FIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNK 170
Query: 142 DI 143
DI
Sbjct: 171 DI 172
>sp|Q22AX5|RL9_TETTS 60S ribosomal protein L9 OS=Tetrahymena thermophila (strain SB210)
GN=RPL9 PE=1 SV=1
Length = 188
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 82/112 (73%), Gaps = 1/112 (0%)
Query: 33 NGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGE 92
++KE A ++++ S I NM++GVT+G+ +KM+ A+AHFPI +++ + +EI++FLGE
Sbjct: 59 QASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGE 118
Query: 93 KYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
K IRR++ PGVK+S ++K+ L ++G D+ NVS++ ALI QS VK KDI
Sbjct: 119 KRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDI 170
>sp|A2BMD5|RL6_HYPBU 50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl6p PE=3 SV=1
Length = 186
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/103 (49%), Positives = 70/103 (67%), Gaps = 4/103 (3%)
Query: 40 AAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVK 99
A V T+ +HI NM+ GVTKGF YK++ Y+HFP+ + ++E NFLGEK R K
Sbjct: 71 ALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAK 128
Query: 100 MAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+ PGV V QKD++I+EG DIE V ++AA I+Q+T VK+KD
Sbjct: 129 IMPGVTVKV--QKDDVIVEGIDIEAVGQTAANIEQATKVKDKD 169
>sp|Q9V1V1|RL6_PYRAB 50S ribosomal protein L6P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 72/111 (64%), Gaps = 4/111 (3%)
Query: 32 DNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLG 91
D +K++A VRT +HI+NM+KGVT+GF YK++ Y+HFPI + ++E NFLG
Sbjct: 58 DFPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLG 115
Query: 92 EKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
EK RR K+ PGV V Q E+I+EG D E V ++AA I+Q+T + D
Sbjct: 116 EKAPRRAKILPGVTVKVKGQ--EIIVEGIDKEAVGQTAANIEQATRITKWD 164
>sp|O02376|RL9_HAECO 60S ribosomal protein L9 (Fragment) OS=Haemonchus contortus PE=2
SV=1
Length = 141
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 52/67 (77%)
Query: 34 GTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEK 93
G +KEIAA+RTVCSHI NM+KGVTKGF YKMR+ YAHFPIN + +EIRNFLGEK
Sbjct: 60 GVRKEIAAIRTVCSHIQNMIKGVTKGFRYKMRSVYAHFPINVTLQDGGRTVEIRNFLGEK 119
Query: 94 YIRRVKM 100
+R V +
Sbjct: 120 IVRPVPL 126
>sp|Q8U015|RL6_PYRFU 50S ribosomal protein L6P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl6p PE=1 SV=1
Length = 184
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 32 DNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLG 91
D +K++A RT +HI NM+KGVT+GF YK++ Y+HFPI+ + ++E NFLG
Sbjct: 58 DFPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIE--NFLG 115
Query: 92 EKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
EK R+ K+ PGV V Q E+I+EG D E V ++AA I+Q+T + D
Sbjct: 116 EKAPRKAKILPGVTVKVRGQ--EIIVEGIDKEAVGQTAANIEQATRITKWD 164
>sp|O59433|RL6_PYRHO 50S ribosomal protein L6P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl6p PE=3 SV=2
Length = 184
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 4/111 (3%)
Query: 32 DNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLG 91
D +K++A VRT +HI+NM+KGVT+GF YK++ Y+HFPI + ++E NFLG
Sbjct: 58 DFPRRKDVAIVRTFKAHINNMIKGVTEGFTYKLKVVYSHFPITVKVQGDEVIIE--NFLG 115
Query: 92 EKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
EK RR K+ PGV V Q E+I+EG D E ++AA I+Q+T + D
Sbjct: 116 EKAPRRAKILPGVTVKVKGQ--EIIVEGIDKEATGQTAANIEQATRITKWD 164
>sp|C5A269|RL6_THEGJ 50S ribosomal protein L6P OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=rpl6p PE=3 SV=1
Length = 184
Score = 94.7 bits (234), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK+IA RT +HI+NM+KGVT+GF YK++ Y+HFP+ + ++E NFLGEK
Sbjct: 62 KKDIAIARTFKAHINNMIKGVTEGFTYKLKVVYSHFPVTVKVQGDEVIIE--NFLGEKNP 119
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
RR K+ PGV V Q E+ +EG D E V ++AA I+Q+T + D
Sbjct: 120 RRAKILPGVTVKVRGQ--EITVEGIDKEKVGQTAANIEQATRITKWD 164
>sp|A3DNC3|RL6_STAMF 50S ribosomal protein L6P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl6p PE=3 SV=1
Length = 185
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 77/118 (65%), Gaps = 6/118 (5%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLL 84
ETF D +++ A V T+ SHI NM+KGV KG+ YK++ Y+HFPI + N ++
Sbjct: 57 ETFFAD-----RRKKALVGTIASHIENMIKGVLKGYRYKLKIIYSHFPITVEVDDRNRIV 111
Query: 85 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
I+NFLGEK R K+ G V + + +++I+EG DIE+V ++AA I+ +T VK+KD
Sbjct: 112 RIKNFLGEKSDRIAKII-GEDVKVTVKGEDIIVEGIDIEHVGQTAANIELATKVKDKD 168
>sp|B6YSN0|RL6_THEON 50S ribosomal protein L6P OS=Thermococcus onnurineus (strain NA1)
GN=rpl6p PE=3 SV=1
Length = 184
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK+IA RT +HI+NM+KGVT+GF YK++ Y+HFP+ + ++E NFLGEK
Sbjct: 62 KKDIAIARTFKAHIANMIKGVTEGFTYKLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNP 119
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
RR K+ PGV V E+I+EG D E V ++AA I+Q+T + D
Sbjct: 120 RRAKILPGVTVKV--MGSEVIVEGIDKEAVGQTAANIEQATRITKWD 164
>sp|P54042|RL6_METJA 50S ribosomal protein L6P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl6p PE=3 SV=1
Length = 182
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 74/112 (66%), Gaps = 4/112 (3%)
Query: 31 CDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFL 90
C+ +K+ A V T+ +HI+NM+KGVT+GF YK++ YAHFP+ N ++E NFL
Sbjct: 57 CEYPRRKDKAMVGTIRAHINNMIKGVTEGFTYKLKIRYAHFPMKVSVKGNEVIIE--NFL 114
Query: 91 GEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
GEK+ RR ++ GV V S +++I+ G D E V ++AA I+Q+T +K +D
Sbjct: 115 GEKHPRRARIMEGVTVKIS--GEDVIVTGIDKEKVGQTAANIEQATRIKGRD 164
>sp|B8D5V4|RL6_DESK1 50S ribosomal protein L6P OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl6p PE=3 SV=1
Length = 184
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 7/118 (5%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLL 84
ETF D +K+ A V T+ +HI NM+ GV +G+ YK++ ++HFPI E N ++
Sbjct: 57 ETFVAD-----RKQKALVGTIAAHIRNMITGVVRGYRYKLKIIFSHFPITVSVDEKNKVV 111
Query: 85 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
IRNF+GEK R K+ VKV S + ++IIEG DIE V +AA I+++T V ++D
Sbjct: 112 RIRNFMGEKSDRIAKIYGNVKVKVSGE--DIIIEGVDIEEVGLTAASIERATRVTDRD 167
>sp|A9A9P8|RL6_METM6 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl6p PE=3 SV=1
Length = 182
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 76/121 (62%), Gaps = 4/121 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++C K + A V T SHI NM+KGVT GF YK+ YAHFP+ V+++ NT++ I N
Sbjct: 55 IECTFPRKAQTAIVGTYRSHIQNMIKGVTDGFEYKLVIRYAHFPMK-VSAKGNTVM-IDN 112
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPG 148
FLGEKY R K+ GV V S + E+I+ G + E V ++AA I+Q+T VK +D +
Sbjct: 113 FLGEKYTRTAKIMDGVTVKVSGE--EVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQD 170
Query: 149 G 149
G
Sbjct: 171 G 171
>sp|A8AC04|RL6_IGNH4 50S ribosomal protein L6P OS=Ignicoccus hospitalis (strain KIN4/I /
DSM 18386 / JCM 14125) GN=rpl6p PE=3 SV=1
Length = 186
Score = 90.5 bits (223), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
V+ +K A V TV +HI NM+ GVTKG+ YKM+ ++HFPI+ + +EI N
Sbjct: 60 VETFFANRKRKALVNTVAAHIKNMITGVTKGWRYKMKIVFSHFPISVKVVGDR--VEIHN 117
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
F+GEK R K+ PGV V Q ++IIEG DIE V+++AA I+Q+T + D
Sbjct: 118 FIGEKAPRVAKVLPGVTVKV--QGRDVIIEGTDIEKVAQTAANIEQATKITEFD 169
>sp|Q5JJG4|RL6_PYRKO 50S ribosomal protein L6P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl6p PE=3 SV=1
Length = 184
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK++A VRT +HI+NM+KGVT+GF Y+++ Y+HFP+ + ++E NFLGEK
Sbjct: 62 KKDVAIVRTFKAHINNMIKGVTEGFKYRLKVVYSHFPMTVKVQGDEVVIE--NFLGEKNP 119
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
RR K+ PGV V + E+ +EG D E V ++AA I+Q+T + D
Sbjct: 120 RRAKILPGVTVKV--KGSEIEVEGIDKEAVGQTAANIEQATRITKWD 164
>sp|Q9YF91|RL6_AERPE 50S ribosomal protein L6P OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl6p PE=3
SV=1
Length = 182
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 69/103 (66%), Gaps = 4/103 (3%)
Query: 40 AAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVK 99
A V + HI NM+KGV GF YK++ Y+HFPIN V E + + I NFLGEK +R +
Sbjct: 67 ALVGAIAGHIRNMIKGVQGGFRYKLKIMYSHFPIN-VKVEGDKFI-ISNFLGEKGLRIAR 124
Query: 100 MAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+ PGVKV + ++I+EG D+E V+++AA I+ +T VK+KD
Sbjct: 125 IMPGVKVQV--KGSDVIVEGIDVEKVAQTAANIELATKVKDKD 165
>sp|A6VH01|RL6_METM7 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl6p PE=3 SV=1
Length = 182
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++C K + A V T SHI NM+ GVT GF YK+ YAHFP+ V+++ NT+ I N
Sbjct: 55 IECTFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMK-VSAKGNTVT-IDN 112
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPG 148
FLGEKY R K+ GV V S + E+I+ G + E V ++AA I+Q+T VK +D +
Sbjct: 113 FLGEKYTRTAKIMDGVTVKVSGE--EVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQD 170
Query: 149 G 149
G
Sbjct: 171 G 171
>sp|A4FWA5|RL6_METM5 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl6p PE=3 SV=1
Length = 182
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 74/121 (61%), Gaps = 4/121 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++C K + A V T SHI NM+ GVT GF YK+ YAHFP+ V+++ NT+ I N
Sbjct: 55 IECTFPRKVQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMK-VSAKGNTVT-IDN 112
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPG 148
FLGEKY R K+ GV V S + E+I+ G + E V ++AA I+Q+T VK +D +
Sbjct: 113 FLGEKYTRTAKIMDGVTVKVSGE--EVIVSGANKEFVGQTAANIEQATKVKGRDTRIFQD 170
Query: 149 G 149
G
Sbjct: 171 G 171
>sp|Q6LXD7|RL6_METMP 50S ribosomal protein L6P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl6p PE=3 SV=1
Length = 182
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++C K + A V T SHI NM+ GVT GF YK+ YAHFP+ V+++ NT++ I N
Sbjct: 55 IECAFPRKAQTAIVGTYRSHIQNMITGVTDGFEYKLVIRYAHFPMK-VSAKGNTVM-IDN 112
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPG 148
FLGEKY R K+ GV V S + ++++ G + E V ++AA I+Q+T VK +D +
Sbjct: 113 FLGEKYTRTAKIMDGVTVKVSGE--DVVVSGANKEFVGQTAANIEQATKVKGRDTRIFQD 170
Query: 149 G 149
G
Sbjct: 171 G 171
>sp|A6UQ60|RL6_METVS 50S ribosomal protein L6P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl6p PE=3 SV=1
Length = 182
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLL 84
E V+ K + A V T SHI NM+KGV++GF YK+ YAHFP+ VT + NT++
Sbjct: 51 EKVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMK-VTFKGNTVI 109
Query: 85 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
I NFLGEKY R K+ GV V + +E+I+ G + E V ++AA I+Q+T VK +D
Sbjct: 110 -IDNFLGEKYPRTAKVMEGVTVKVN--GEEVIVSGTNKEFVGQTAANIEQATKVKGRDTR 166
Query: 145 L 145
+
Sbjct: 167 I 167
>sp|P14030|RL6_METVA 50S ribosomal protein L6P OS=Methanococcus vannielii GN=rpl6p PE=3
SV=1
Length = 182
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLL 84
E V+ K + A V T SHI NM+KGV++GF YK+ YAHFP+ VT + NT++
Sbjct: 51 EKVVVESTFPKKNQTAMVGTYRSHIQNMIKGVSEGFEYKLVIRYAHFPMK-VTFKGNTVI 109
Query: 85 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
I NFLGEKY R K+ GV V + +E+I+ G + E V ++AA I+Q+T VK +D
Sbjct: 110 -IDNFLGEKYPRTAKVMEGVTVKVN--GEEVIVSGTNKEFVGQTAANIEQATKVKGRDTR 166
Query: 145 L 145
+
Sbjct: 167 I 167
>sp|Q2FSG5|RL6_METHJ 50S ribosomal protein L6P OS=Methanospirillum hungatei (strain JF-1
/ DSM 864) GN=rpl6p PE=3 SV=1
Length = 176
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINC-VTSENNTLLEIRNFLGEKY 94
K + V T+ SH SNM GVTKG+LY M+ Y+HFPI V E LEI NFLGEKY
Sbjct: 58 KAVTSMVGTLASHCSNMCTGVTKGYLYSMKVVYSHFPIQIKVVGET---LEIVNFLGEKY 114
Query: 95 IRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
R ++ PG V DE+ + G D E V +AA I+++T ++++D
Sbjct: 115 PRSARILPGTTVKVG--SDEVTVTGIDKEVVGSTAANIERATRIRDRD 160
>sp|A6UWV4|RL6_META3 50S ribosomal protein L6P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl6p PE=3 SV=1
Length = 183
Score = 84.0 bits (206), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK+ A + T SHI N++ GV++GF YKM+ YAHFP+ N +++ NFLGEK+
Sbjct: 63 KKQAAIIGTFASHIKNIITGVSEGFEYKMKIRYAHFPMKISVKGNEVIID--NFLGEKHP 120
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
R+ + GVKV S + ++I+ G D E ++AA I+Q+T V+ +D
Sbjct: 121 RKATIMEGVKVKVSGE--DVIVTGIDKEKTGQTAANIEQATRVRGRD 165
>sp|A0B9V4|RL6_METTP 50S ribosomal protein L6P OS=Methanosaeta thermophila (strain DSM
6194 / PT) GN=rpl6p PE=3 SV=1
Length = 176
Score = 83.6 bits (205), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
K+ +A V T+ +HI NM++GVT GF Y+MR Y+HFPI ++ + I NFLGE+
Sbjct: 60 KQHLAMVGTIAAHIKNMIRGVTDGFEYRMRVVYSHFPIQVKVADGK--VAISNFLGERKP 117
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGG 149
R + V V KDE++I G D E V ++ A I+Q+T V+ D+ + G
Sbjct: 118 RFATIVGDVNVEVG--KDEILIRGMDKEAVGQTMANIEQATRVRGFDVRIFQDG 169
>sp|Q975J6|RL6_SULTO 50S ribosomal protein L6P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl6p PE=3 SV=1
Length = 186
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 70/114 (61%), Gaps = 4/114 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
V+ +++ A ++ +HI NM GVTKG+ Y ++ Y HFP+ S N ++I+N
Sbjct: 55 VETTFADRRKKAQFYSIIAHIENMFTGVTKGYRYYLKIIYTHFPVTVKVSGNE--VQIQN 112
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+GEK IRR K+ GVKV N K +D +I+EG DIE V ++AA I+ ++ + D
Sbjct: 113 LIGEKNIRRAKIMTGVKV-NVKGED-IIVEGQDIEKVGQTAANIELASKITGYD 164
>sp|O28370|RL6_ARCFU 50S ribosomal protein L6P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl6p PE=3 SV=1
Length = 196
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK A V T HI N++ GV +GF Y ++ YAHFPI N ++E NF+GEK+
Sbjct: 80 KKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHP 137
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
RR K+ +V S Q ++ + G DIE ++AA ++Q+T +K KD
Sbjct: 138 RRAKIVGRAQVEISGQ--DIYVRGIDIEECGQTAANLEQATKIKRKD 182
>sp|O26127|RL6_METTH 50S ribosomal protein L6P OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=rpl6p PE=3 SV=1
Length = 177
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 69/107 (64%), Gaps = 4/107 (3%)
Query: 36 KKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYI 95
KK+ A + TV +HISNM+ GVT+GF Y+M+ YAHFP++ + + ++E NFLGE++
Sbjct: 61 KKDKAMIGTVRAHISNMITGVTEGFRYRMKIVYAHFPMSVKVAGDKVVIE--NFLGERHP 118
Query: 96 RRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
R + KV + DE+ I G + E+V ++ A I+Q+T +K +D
Sbjct: 119 RTARFVGDTKVQV--KGDEVEITGINKEHVGQTMANIEQATKIKGRD 163
>sp|P14135|RL6_HALMA 50S ribosomal protein L6P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl6p PE=1
SV=3
Length = 178
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 25 ETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLL 84
+T ++ D K ++ + T SHI NM GVT+G+ Y M Y+HFP+ + ++
Sbjct: 46 DTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVI 105
Query: 85 EIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIH 144
E NFLGEK RR + V + EL + G DIE V ++AA I+Q T + +KD+
Sbjct: 106 E--NFLGEKAPRRTTIHGDTDVEIDGE--ELTVSGPDIEAVGQTAADIEQLTRINDKDVR 161
Query: 145 L 145
+
Sbjct: 162 V 162
>sp|Q2NFX3|RL6_METST 50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl6p PE=3 SV=1
Length = 184
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 3/119 (2%)
Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
EE V KK+ A V T+ SHISNM+ GV GF YKM+ YAHFP+ +
Sbjct: 50 EENVTVKVAFPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTV--KVQGKI 107
Query: 84 LEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+ I NFLGE+ R+ K+ G V S + +++ I G + E+V ++ A I+Q+T +K +D
Sbjct: 108 VTIDNFLGERSPRKAKII-GDDVKVSVKGEDVTITGINKEHVGQTMANIEQATKIKGRD 165
>sp|O05637|RL6_SULAC 50S ribosomal protein L6P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl6p PE=3 SV=1
Length = 189
Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 66/103 (64%), Gaps = 4/103 (3%)
Query: 40 AAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVK 99
A + ++ +HI NM+ G G+ Y ++ HFPI+ S + +++ N +GEK IRR K
Sbjct: 69 ALLYSIIAHIKNMITGTINGYRYYLKVISTHFPISVKVSGDE--VQVSNLIGEKNIRRAK 126
Query: 100 MAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+ PGVKV+ + +++++EG+DI NV+++AA I+ ST + D
Sbjct: 127 ILPGVKVTV--KGEDIVVEGSDIYNVAQTAANIESSTKIVGYD 167
>sp|Q12ZT5|RL6_METBU 50S ribosomal protein L6P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl6p PE=3 SV=1
Length = 177
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
VD + KK+ A V T SHI+NM+KGV GF Y M+ Y+HFP+ N I N
Sbjct: 53 VDSASSRKKQKAMVGTYTSHITNMMKGVVDGFEYHMKVVYSHFPMQI--KVNGKKFVINN 110
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
FLGEK R + V S DE+I+ G + E+V ++AA I+Q T +K D
Sbjct: 111 FLGEKKPRVSNILGETSVKAS--GDEVIVSGINKEDVGQTAANIEQKTKIKRFD 162
>sp|Q3IMX2|RL6_NATPD 50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl6p PE=3 SV=1
Length = 177
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++ D+ K + V T SH++NM GVT+G+ Y M Y+HFP+ + ++E N
Sbjct: 49 IETDDDNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGDIVIE--N 106
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPG 148
FLGEK R+ + V + EL + G IE+V ++AA I+Q T V +KD +
Sbjct: 107 FLGEKAPRKTPVRGDTSVEVDGE--ELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQD 164
Query: 149 GGGGGCLYLNKT 160
G +Y+ +T
Sbjct: 165 G-----VYITET 171
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,335,971
Number of Sequences: 539616
Number of extensions: 2938777
Number of successful extensions: 7617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 7464
Number of HSP's gapped (non-prelim): 143
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)