Query psy7622
Match_columns 179
No_of_seqs 163 out of 1028
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 23:04:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_F 60S ribosomal protein L 100.0 7.7E-62 2.6E-66 400.9 14.6 157 4-166 23-189 (190)
2 4a17_E RPL9, 60S ribosomal pro 100.0 3.9E-62 1.3E-66 402.1 11.5 157 4-166 23-188 (188)
3 3u5e_H L8, RP24, YL11, 60S rib 100.0 2E-61 7E-66 398.7 12.3 158 4-166 23-190 (191)
4 2zkr_e 60S ribosomal protein L 100.0 5.8E-61 2E-65 396.2 13.5 158 4-167 23-191 (192)
5 3j21_F 50S ribosomal protein L 100.0 6.4E-60 2.2E-64 387.8 14.6 152 4-164 24-181 (184)
6 1vq8_E 50S ribosomal protein L 100.0 1E-58 3.5E-63 379.1 13.6 153 4-165 19-177 (178)
7 3v2d_H 50S ribosomal protein L 100.0 1.8E-52 6.2E-57 342.4 13.1 142 4-159 22-171 (180)
8 3r8s_G 50S ribosomal protein L 100.0 2.8E-51 9.6E-56 334.3 11.7 136 4-146 21-164 (176)
9 1rl6_A Protein (ribosomal prot 100.0 1E-50 3.5E-55 331.4 12.8 136 4-146 21-164 (177)
10 1nkw_E 50S ribosomal protein L 100.0 8.1E-50 2.8E-54 334.1 16.1 136 4-146 49-192 (212)
11 2zjr_E 50S ribosomal protein L 100.0 1.1E-50 3.7E-55 333.3 4.5 135 4-145 22-164 (185)
12 3bbo_I Ribosomal protein L6; l 100.0 1.4E-49 4.9E-54 334.8 8.9 136 4-146 64-208 (223)
13 2cql_A OK/SW-CL.103, 60S ribos 99.8 8.3E-20 2.8E-24 136.6 2.5 60 4-63 30-98 (100)
14 2cql_A OK/SW-CL.103, 60S ribos 85.3 0.72 2.5E-05 33.7 3.5 25 97-123 16-40 (100)
15 3j21_F 50S ribosomal protein L 71.5 3.5 0.00012 33.1 3.8 14 123-136 66-79 (184)
16 3u5e_H L8, RP24, YL11, 60S rib 70.3 3.7 0.00013 33.2 3.7 14 123-136 66-79 (191)
17 3iz5_F 60S ribosomal protein L 70.3 3.7 0.00013 33.1 3.7 12 124-135 68-79 (190)
18 1vq8_E 50S ribosomal protein L 70.1 3.8 0.00013 32.8 3.7 36 99-136 33-74 (178)
19 1rl6_A Protein (ribosomal prot 68.9 3.5 0.00012 32.9 3.2 27 123-149 62-99 (177)
20 2zkr_e 60S ribosomal protein L 67.7 3.1 0.00011 33.6 2.7 14 123-136 68-81 (192)
21 4a17_E RPL9, 60S ribosomal pro 67.7 3.8 0.00013 33.0 3.2 13 124-136 67-79 (188)
22 3v2d_H 50S ribosomal protein L 66.8 3.6 0.00012 32.9 2.9 27 123-149 63-100 (180)
23 1nkw_E 50S ribosomal protein L 64.5 4.2 0.00014 33.5 2.9 27 123-149 90-127 (212)
24 3bbo_I Ribosomal protein L6; l 58.2 3.9 0.00013 34.0 1.6 21 98-120 51-71 (223)
25 3r8s_G 50S ribosomal protein L 56.6 3.6 0.00012 32.8 1.1 28 122-149 61-99 (176)
26 2zjr_E 50S ribosomal protein L 53.5 3.7 0.00013 33.1 0.7 21 98-120 9-29 (185)
27 2ctf_A Vigilin; K homology typ 47.6 33 0.0011 24.4 5.1 32 103-135 58-89 (102)
28 2w7a_A LINE-1 ORF1P; RNA-bindi 37.1 13 0.00045 27.1 1.5 28 120-148 73-100 (100)
29 2opv_A KHSRP protein; KH domai 31.2 76 0.0026 21.3 4.6 31 103-135 44-82 (85)
30 4eld_A MJ16.5-P1, small heat s 30.1 88 0.003 23.4 5.2 46 65-123 50-99 (161)
31 1vig_A Vigilin; RNA-binding pr 28.2 95 0.0033 20.2 4.5 32 102-135 34-69 (71)
32 4fqn_A Malcavernin; helical do 24.8 27 0.00094 25.6 1.3 17 121-137 30-46 (98)
33 2apn_A Protein HI1723; HI1723 24.4 42 0.0014 23.9 2.3 12 139-150 29-40 (114)
34 2ctj_A Vigilin; K homology typ 23.9 86 0.0029 21.9 3.9 33 103-136 48-83 (95)
35 3lyw_A YBBR family protein; st 23.9 60 0.002 23.0 3.0 25 93-118 58-82 (90)
36 3gla_A Low molecular weight he 23.0 85 0.0029 21.3 3.7 30 92-123 14-47 (100)
37 1nwb_A Hypothetical protein AQ 22.4 44 0.0015 24.4 2.1 12 140-151 31-42 (124)
38 3j20_L 30S ribosomal protein S 22.3 81 0.0028 22.6 3.5 28 113-140 4-31 (102)
39 2js7_A Myeloid differentiation 21.8 44 0.0015 25.3 2.1 33 115-151 21-53 (160)
40 3q9p_A Heat shock protein beta 21.8 1E+02 0.0035 20.7 3.8 21 101-123 20-40 (85)
41 2ctk_A Vigilin; K homology typ 21.4 1.3E+02 0.0043 21.3 4.4 33 102-136 46-82 (104)
42 4fei_A Heat shock protein-rela 21.2 97 0.0033 21.4 3.7 29 93-123 17-49 (102)
No 1
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=100.00 E-value=7.7e-62 Score=400.92 Aligned_cols=157 Identities=48% Similarity=0.686 Sum_probs=148.5
Q ss_pred cccccccCCcEEEEEee------ec--cCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeE
Q psy7622 4 RNLNPGGGGGCLYLNKT------YR--WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINC 75 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~------~~--~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v 75 (179)
+.|+||||+|+|++.+. .. +++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 23 ~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyr~~~ 102 (190)
T 3iz5_F 23 KVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINA 102 (190)
T ss_dssp TEEEEEETTEEEEEECCCTTEEEEEETTTTEEEEEESCCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEE
T ss_pred CEEEEECCCceEEEEccCCcEEEEEEcCCCEEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCEEEEEEEEEEccccee
Confidence 45899999999999983 23 78999999999999999999999999999999999999999999999999998
Q ss_pred EeccCCceeEEeccCCceeeEEEeCCCCcEEEecCCC--CEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCc
Q psy7622 76 VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQK--DELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGG 153 (179)
Q Consensus 76 ~i~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~--t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~ 153 (179)
+++++|+.|+|+||||||||+.++||+||++++| ++ |+|+|+|+|||+|||+||+||++|++|+||+|+||||
T Consensus 103 ~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~-~~~k~eIil~G~Dke~Vgq~AA~Irq~~~vk~kD~R~F~DG---- 177 (190)
T 3iz5_F 103 SITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRS-EKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDG---- 177 (190)
T ss_dssp EEETTTTEEEEESGGGCSSCEEEECCSSCEEEEC-CTTTCEEEEEESCHHHHHHHHHHHHHHTCCCSSCTTTCCCE----
T ss_pred EEccCCCEEEEEecCCccccEEEECCCCeEEEEc-CCCCCEEEEEECCHHHHHHHHHHHHhhccccCCcccEeecC----
Confidence 8877899999999999999999999999999998 54 8999999999999999999999999999999999999
Q ss_pred eEEeccccceeec
Q psy7622 154 CLYLNKTYRWEET 166 (179)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (179)
||+|++|.+.++
T Consensus 178 -iyv~ek~~~~~~ 189 (190)
T 3iz5_F 178 -IYVSDKGTITED 189 (190)
T ss_dssp -EEECCCCCCCCC
T ss_pred -EEEEeeeEEecc
Confidence 999999998765
No 2
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=100.00 E-value=3.9e-62 Score=402.13 Aligned_cols=157 Identities=36% Similarity=0.601 Sum_probs=147.1
Q ss_pred cccccccCCcEEEEEeee------c-cCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEE
Q psy7622 4 RNLNPGGGGGCLYLNKTY------R-WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCV 76 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~~------~-~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~ 76 (179)
+.|+||||+|+|++.+.. . +++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||+++
T Consensus 23 ~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyr~~~~ 102 (188)
T 4a17_E 23 RVVEVKGPLGTIKRAFRYASVDIQKPTADNVKLQIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEA 102 (188)
T ss_dssp TEEEEEETTEEEEEECTTSCCEECCCBTTBCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCEEEEEEEECSSSCCEEE
T ss_pred CEEEEEcCCeEEEEEccCCeEEEEEccCCeEEEEECCCCHHHHHHHHHHHHHHHhheEeeccCeEEEEEEEEEcccceEE
Confidence 458999999999999832 3 689999999999999999999999999999999999999999999999999887
Q ss_pred eccCCceeEEeccCCceeeEEEeCCCCcEEEecCCC--CEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCce
Q psy7622 77 TSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQK--DELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGC 154 (179)
Q Consensus 77 i~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~--t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~~ 154 (179)
++++|+.|+|+||||||||+.++||+||++++| ++ |+|+|+|+|||+|||+||+||++|++|+||+|+||||
T Consensus 103 v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~-~~~k~eIil~G~Dke~Vgq~AA~Ir~~~~vk~kD~R~F~DG----- 176 (188)
T 4a17_E 103 VAKDGSSIEIKHFLGEKRIRRIQALPGVKISRK-DEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDIRQFLDG----- 176 (188)
T ss_dssp ECSSSCEEEEECGGGCCCEEEEECCTTCEEECC-TTSSSEEEEEESCHHHHHHHHHHHHHHTCCCSSCHHHHCCE-----
T ss_pred EccCCCEEEEEeccCCcccEEEECCCCeEEEEC-CCCCCEEEEEEcCHHHHHHHHHHHHhhcccCCCcccEeecC-----
Confidence 777899999999999999999999999999998 55 9999999999999999999999999999999999999
Q ss_pred EEeccccceeec
Q psy7622 155 LYLNKTYRWEET 166 (179)
Q Consensus 155 ~~~~~~~~~~~~ 166 (179)
||+|++|.+.+|
T Consensus 177 iyv~ek~~~~~~ 188 (188)
T 4a17_E 177 IYVSDKRLAMNE 188 (188)
T ss_dssp EEEEEEEECC--
T ss_pred eEEEEeEEEecC
Confidence 999999998764
No 3
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=100.00 E-value=2e-61 Score=398.68 Aligned_cols=158 Identities=42% Similarity=0.612 Sum_probs=147.7
Q ss_pred cccccccCCcEEEEEeee-------ccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEE
Q psy7622 4 RNLNPGGGGGCLYLNKTY-------RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCV 76 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~~-------~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~ 76 (179)
+.|+||||+|+|++.+.. .+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||+++
T Consensus 23 ~~V~VkGPkG~L~~~~~~~~v~i~~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyri~a~ 102 (191)
T 3u5e_H 23 RIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVN 102 (191)
T ss_dssp TEEEEEETTEEEEEECTTTCCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEE
T ss_pred CEEEEEcCCeEEEEEccCCcEEEEEecCCeEEEEECCCCHHHHHHHHHHHHHHHhheeeeccCEEEEEEEEEEeeeEEEE
Confidence 458999999999999842 3489999999999999999999999999999999999999999999999998876
Q ss_pred e--ccCCceeEEeccCCceeeEEEeCCCCcEEEec-CCCCEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCc
Q psy7622 77 T--SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGG 153 (179)
Q Consensus 77 i--~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~-~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~ 153 (179)
+ +++|+.|+|+||||||||+.++||+||++++| .++|+|+|+|+|||+|||+||+||++|++|+||+|+||||
T Consensus 103 v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~Vgq~AA~Irq~~~vk~kD~R~FlDG---- 178 (191)
T 3u5e_H 103 IVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDG---- 178 (191)
T ss_dssp EECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHHHHHHHHHHHHTTCCCSSCTTTCCCE----
T ss_pred EEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHHHHHHHHHHHhhcccCCCcccEeecC----
Confidence 7 66899999999999999999999999999998 2359999999999999999999999999999999999999
Q ss_pred eEEeccccceeec
Q psy7622 154 CLYLNKTYRWEET 166 (179)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (179)
||+|++|.+.++
T Consensus 179 -iyv~ek~~~~~~ 190 (191)
T 3u5e_H 179 -IYVSHKGFITED 190 (191)
T ss_dssp -EEEEEEEESSSC
T ss_pred -eEEEEeeEEEec
Confidence 999999998765
No 4
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=5.8e-61 Score=396.19 Aligned_cols=158 Identities=56% Similarity=0.790 Sum_probs=142.9
Q ss_pred cccccccCCcEEEEEeee------ccCCe---EEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEecee
Q psy7622 4 RNLNPGGGGGCLYLNKTY------RWEET---FDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPIN 74 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~~------~~~~~---l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~ 74 (179)
+.|+||||+|+|++.+.. .+++. |.|++|+++|+++|+|||+||||+|||+|||+||+|+|+++|+||||+
T Consensus 23 ~~VtVkGpkG~L~~~~~~~~v~i~~~~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~NmI~GVt~Gf~~~L~lvGvGyra~ 102 (192)
T 2zkr_e 23 RTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPIN 102 (192)
T ss_dssp TEEEEEETTEEEEEECCSSSCEEEEETTTTCEEEEECSCCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCE
T ss_pred CEEEEECCCeEEEEEeCCCCEEEEEecCceeEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeeccCcEEEEEEEEecceeE
Confidence 468999999999999953 46777 999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCceeEEeccCCceeeEEEeCCCCcEEEecCCC--CEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCC
Q psy7622 75 CVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQK--DELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGG 152 (179)
Q Consensus 75 v~i~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~--t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~ 152 (179)
++++++|+.|+|+||||||||+.++||+||+++++ ++ |+|+|+|+|||+|||+||+||++|++|+||+|+||||
T Consensus 103 v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~-~~~~t~I~v~GiDKq~Vgq~AA~IR~~~~vk~kD~R~F~Dg--- 178 (192)
T 2zkr_e 103 VVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVS-QAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDG--- 178 (192)
T ss_dssp EEECTTCSEEEEESGGGCSSCEEEECCSSCEEEEC-SSCSSEEEEEESCHHHHHHHHHHHHHHTCCSSSCTTTCCCE---
T ss_pred EEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEc-CCCCCEEEEEeCCHHHHHHHHHHHHhhCcCCCCCccEeecC---
Confidence 76676799999999999999999999999999998 54 9999999999999999999999999999999999999
Q ss_pred ceEEeccccceeecc
Q psy7622 153 GCLYLNKTYRWEETF 167 (179)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (179)
||||++|.+++++
T Consensus 179 --iyv~~k~~~~~~~ 191 (192)
T 2zkr_e 179 --IYVSEKGTVQQAD 191 (192)
T ss_dssp --EEEEEC-------
T ss_pred --EEEEEeccccccC
Confidence 9999999998765
No 5
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=6.4e-60 Score=387.84 Aligned_cols=152 Identities=35% Similarity=0.521 Sum_probs=142.1
Q ss_pred cccccccCCcEEEEEee------eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEe
Q psy7622 4 RNLNPGGGGGCLYLNKT------YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVT 77 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~------~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i 77 (179)
+.|+||||+|+|++.+. +.+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||.+++
T Consensus 24 ~~V~VkGpkG~L~~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgypira~~ 103 (184)
T 3j21_F 24 YKVKVKGPKGELEREFFWPGIQIFTEDGNVVIYKDFPRRKDVAIARTFAAHIRNMIKGVTEGFTYKLKVVYSHFPISVKV 103 (184)
T ss_dssp SEEEEECSSCEEEEECCCTTCEEEEETTEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEE
T ss_pred CEEEEEcCCeEEEEEecCCcEEEEEeCCEEEEEECCCCHHHHHHHHHHHHHHHhhheeeccCeEEEEEEEEecccceEEE
Confidence 45899999999999983 247899999999999999999999999999999999999999999999999888766
Q ss_pred ccCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCceEEe
Q psy7622 78 SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYL 157 (179)
Q Consensus 78 ~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~~~~~ 157 (179)
+ |+.|+|+||||||||+.++||+||++++| + ++|+|+|+|||+|||+||+||++|+|||||+|+|||| ||+
T Consensus 104 ~--g~~l~l~n~LG~sh~v~~~ip~gv~v~v~-~-~~Iil~G~Dke~Vgq~AA~Ir~~~~vK~KDiR~F~DG-----iyv 174 (184)
T 3j21_F 104 Q--GDEVIIENFLGEKAPRKAKILPGVTVKVR-G-QEIIVEGIDKEAVGQTAANIEQATRITKWDRRIFQDG-----IYI 174 (184)
T ss_dssp E--TTEEEEECGGGCSSCEEEECCTTEEEEEE-T-TEEEEEESCHHHHHHHHHHHHHHHCCCSSCSSSCCCE-----EEE
T ss_pred c--CCEEEEEecCCccccEEEECCCCeEEEec-C-CEEEEEECCHHHHHHHHHHHhhccccCCCcccEeeCC-----EEE
Confidence 4 89999999999999999999999999997 5 4999999999999999999999999999999999999 999
Q ss_pred cccccee
Q psy7622 158 NKTYRWE 164 (179)
Q Consensus 158 ~~~~~~~ 164 (179)
|+++--.
T Consensus 175 ~ek~~~~ 181 (184)
T 3j21_F 175 VEKAGKP 181 (184)
T ss_dssp SCSSSCC
T ss_pred EecCccc
Confidence 9987543
No 6
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=1e-58 Score=379.11 Aligned_cols=153 Identities=31% Similarity=0.490 Sum_probs=140.1
Q ss_pred cccccccCCcEEEEEe-ee-----ccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEe
Q psy7622 4 RNLNPGGGGGCLYLNK-TY-----RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVT 77 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~-~~-----~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i 77 (179)
+.|+||||+|+|++.+ +. .+++.|.|++|+++|+++|+|||+||||+|||+|||+||+|+|+++|+|||+.+++
T Consensus 19 ~~vtVkGpkG~L~~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~ivGvGypira~~ 98 (178)
T 1vq8_E 19 LDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNV 98 (178)
T ss_dssp TEEEEEETTEEEEEECCCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECSSSCCEEEE
T ss_pred CEEEEECCCeEEEEEEECCeEEEEEECCEEEEEcCCCCHHHHHHHHHHHHHHcCEEEEEccCeEEEEEEEeeCCceEEEE
Confidence 4689999999999999 42 58999999999999999999999999999999999999999999999999655544
Q ss_pred ccCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCCCceEEe
Q psy7622 78 SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYL 157 (179)
Q Consensus 78 ~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~~~~~~~ 157 (179)
+|+.|+|+||||||||+.++||+||+++++ + |+|+|+|+|||+|||+||+||++|+.||||||+|||| ||+
T Consensus 99 --~g~~l~l~N~LG~shpv~~~ip~gi~v~v~-~-~~I~v~G~Dkq~Vgq~AA~Ir~~r~pKGKGIr~F~DG-----iyi 169 (178)
T 1vq8_E 99 --EGDEVVIENFLGEKAPRRTTIHGDTDVEID-G-EELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDG-----VYI 169 (178)
T ss_dssp --ETTEEEEESGGGCSSCEEEECCTTCEEEEE-T-TEEEEEESCHHHHHHHHHHHHHTTCCSSSCTTTCCCE-----EEE
T ss_pred --cCCEEEEEccccccccEEEeCCCCeEEEEe-C-CEEEEEECCHHHHHHHHHHHhccCCCCCCceeEEECC-----EEE
Confidence 488999999999999999999999999997 6 9999999999999999999999999999999999999 999
Q ss_pred ccccceee
Q psy7622 158 NKTYRWEE 165 (179)
Q Consensus 158 ~~~~~~~~ 165 (179)
++++...+
T Consensus 170 ~~k~~~~~ 177 (178)
T 1vq8_E 170 TRKPNRGD 177 (178)
T ss_dssp EECC----
T ss_pred EecccccC
Confidence 99987653
No 7
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=1.8e-52 Score=342.37 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=133.5
Q ss_pred cccccccCCcEEEEEee-----eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEec
Q psy7622 4 RNLNPGGGGGCLYLNKT-----YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTS 78 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~-----~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i~ 78 (179)
+.|+|+||+|+|++.|. ..+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 22 ~~v~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~kk~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~--- 98 (180)
T 3v2d_H 22 GRVKVKGPKGELEVPVSPEMRVVVEEGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARL--- 98 (180)
T ss_dssp TEEEEECSSCEEEEECCTTSEEEEETTEEEEECSCSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEE---
T ss_pred CEEEEEeCCcEEEEEeCCCEEEEEECCEEEEEECCCcHHHHHHHHHHHHHHhhhEEeecCCcEEEEEEEEEeeEEEE---
Confidence 45899999999999984 2578999999999999999999999999999999999999999999999999976
Q ss_pred cCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcc---ccCCceeecCCCCCCceE
Q psy7622 79 ENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIHLNPGGGGGGCL 155 (179)
Q Consensus 79 ~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~---~KgKdiR~FlDG~~~~~~ 155 (179)
+|+.|+| |||||||+.++||+||+|+++ ++|+|+|+|+|||+||||||+||++|+ |||||||+ || .
T Consensus 99 -~g~~l~l--~LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~r~PepYKGKGIry--~~-----e 167 (180)
T 3v2d_H 99 -VGRALEL--TVGFSHPVVVEPPEGITFEVP-EPTRVRVSGIDKQKVGQVAANIRAIRKPSAYHEKGIYY--AG-----E 167 (180)
T ss_dssp -ETTEEEE--ECSSSSCEEECCCTTCEEECS-STTEEEEEESCHHHHHHHHHHHHHHTCCCSSSSCEEEE--TT-----C
T ss_pred -CCCEEEE--EecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhcccCCCCCcCCCcccC--CC-----E
Confidence 4899999 699999999999999999998 889999999999999999999999997 99999999 88 7
Q ss_pred Eecc
Q psy7622 156 YLNK 159 (179)
Q Consensus 156 ~~~~ 159 (179)
|++.
T Consensus 168 ~I~~ 171 (180)
T 3v2d_H 168 PVRL 171 (180)
T ss_dssp CCCC
T ss_pred EEEE
Confidence 7773
No 8
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=2.8e-51 Score=334.31 Aligned_cols=136 Identities=18% Similarity=0.264 Sum_probs=127.7
Q ss_pred cccccccCCcEEEEEee-----eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEec
Q psy7622 4 RNLNPGGGGGCLYLNKT-----YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTS 78 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~-----~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i~ 78 (179)
+.|+|+||+|+|++.++ ..+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 21 ~~V~VkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~--- 97 (176)
T 3r8s_G 21 QVITIKGKNGELTRTLNDAVEVKHADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAV--- 97 (176)
T ss_dssp SEEECCBTTBCCEEECCSSCEEEEETTEEEEECCTTCSSTHHHHHHHHHHHHHTTTHHHHCEEECEEEESTTCEEEC---
T ss_pred CEEEEEcCCEEEEEECCCCEEEEEeCCEEEEEECCCcHHHHHHHHHHHHHHHhHhhhcccCeEEEEEEeeeeeEEEe---
Confidence 45899999999999984 2578999999999999999999999999999999999999999999999999976
Q ss_pred cCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhc---cccCCceeec
Q psy7622 79 ENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQST---TVKNKDIHLN 146 (179)
Q Consensus 79 ~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~---~~KgKdiR~F 146 (179)
+|+.|++ |||||||+.++||+||+|++| ++|+|+|+|+|||+||||||+||++| ||||||||..
T Consensus 98 -~g~~l~l--~LG~sh~v~~~ip~gv~v~v~-~~t~Iil~G~Dke~Vgq~AA~Ir~~R~PepYKGKGI~y~ 164 (176)
T 3r8s_G 98 -KGNVINL--SLGFSHPVDHQLPAGITAECP-TQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGKGVRYA 164 (176)
T ss_dssp -SSSEEEE--ECSSSSCEEEECCTTCEEEEE-ETTEEEEEESCHHHHHHHHHHHHHTTCCCSSSCCEEEES
T ss_pred -CCCEEEE--EecCCeeEEEECCCCeEEEEC-CCCEEEEEECcHHHHHHHHHHhhccCCCCCccCCceeEC
Confidence 5888876 799999999999999999998 89999999999999999999999999 4999999864
No 9
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=1e-50 Score=331.38 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=128.1
Q ss_pred cccccccCCcEEEEEee-----eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEec
Q psy7622 4 RNLNPGGGGGCLYLNKT-----YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTS 78 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~-----~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i~ 78 (179)
+.|+|+||+|+|++.++ ..+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 21 ~~VtVkGpkG~L~~~~~~~v~i~~~~~~l~v~~~~~~k~~~a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~--- 97 (177)
T 1rl6_A 21 NTVTVKGPKGELTRTFHPDMTITVEGNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASK--- 97 (177)
T ss_dssp TEEEEEETTEEEEEECCTTCEEEEETTEEEEECSCCSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEE---
T ss_pred CEEEEECCCeEEEEEcCCCEEEEEeCCEEEEEcCCCCHHHHHHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEe---
Confidence 46899999999999984 2589999999999999999999999999999999999999999999999999986
Q ss_pred cCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcc---ccCCceeec
Q psy7622 79 ENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIHLN 146 (179)
Q Consensus 79 ~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~---~KgKdiR~F 146 (179)
+|+.|+| |||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++|+ |||||||..
T Consensus 98 -~G~~l~l--~LG~Shpv~~~iP~gi~v~v~-~~t~I~v~G~Dkq~Vgq~AA~Ir~~R~PepYKGKGI~y~ 164 (177)
T 1rl6_A 98 -QGKKLVL--SVGYSHPVEIEPEEGLEIEVP-SQTKIIVKGADKQRVGELAANIRAVRPPEPYKGKGIRYE 164 (177)
T ss_dssp -ETTEEEE--ESSSSSCEEECCCTTEEEEEE-ETTEEEEEESCHHHHHHHHHHHHTTSCCCTTTCCEEEET
T ss_pred -cCCEEEE--EecCCccEEEeCCCCcEEEEC-CCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEeEC
Confidence 5999999 699999999999999999998 889999999999999999999999995 999999953
No 10
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=8.1e-50 Score=334.12 Aligned_cols=136 Identities=17% Similarity=0.199 Sum_probs=128.2
Q ss_pred cccccccCCcEEEEEee-----eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEec
Q psy7622 4 RNLNPGGGGGCLYLNKT-----YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTS 78 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~-----~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i~ 78 (179)
+.|+|+||+|+|++.+. ..+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 49 ~~VtVKGPkG~L~~~~~~~v~i~~e~~~i~v~~~~~~k~~ra~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~--- 125 (212)
T 1nkw_E 49 GVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKL--- 125 (212)
T ss_pred CEEEEECCCEEEEEECCCCeEEEEECCEEEEEcCCCCHHHHHHHHHHHHHhhCEEEeeccCeEEEEEEeeeeeEEEc---
Confidence 46899999999999984 2589999999999999999999999999999999999999999999999999986
Q ss_pred cCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcc---ccCCceeec
Q psy7622 79 ENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIHLN 146 (179)
Q Consensus 79 ~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~---~KgKdiR~F 146 (179)
+|+.|+| |||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++|+ |||||||..
T Consensus 126 -~G~~L~L--~LG~SHpv~~~iP~GI~v~v~-~~t~Iiv~GiDKq~VGq~AA~IR~~R~PEPYKGKGIry~ 192 (212)
T 1nkw_E 126 -TGKALEM--NIGYSHPVIIEPPAGVTFAVP-EPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRFV 192 (212)
T ss_pred -CCCEEEE--EccCCccEEEECCCCeEEEeC-CCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEeEC
Confidence 6999999 699999999999999999998 889999999999999999999999995 999999864
No 11
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=1.1e-50 Score=333.34 Aligned_cols=135 Identities=17% Similarity=0.206 Sum_probs=127.3
Q ss_pred cccccccCCcEEEEEeee-----ccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEec
Q psy7622 4 RNLNPGGGGGCLYLNKTY-----RWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTS 78 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~~-----~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i~ 78 (179)
+.|+|+||+|+|++.++. .+++.|.|++|+++|+++|||||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 22 ~~VtVkGpkG~L~~~~~~~v~i~~~~~~i~v~~~~~~k~~~a~~Gt~rslI~NmI~GVt~Gf~kkL~lvGvGYra~~--- 98 (185)
T 2zjr_E 22 GVFKVKGPKGELTVPYNTELTVRQDGDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKL--- 98 (185)
T ss_dssp TCCEECCSSCCCCCCCCSSSCCBCCSSSBBCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHCEEEEEECBSTTCCCCC---
T ss_pred CEEEEECCCeEEEEEcCCCEEEEEeCCEEEEECCCCCHHHHHHHHHHHHHhhcEEeeeccCcEEEEEEeeeccEEEE---
Confidence 468999999999998842 578899999999999999999999999999999999999999999999999986
Q ss_pred cCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcc---ccCCceee
Q psy7622 79 ENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIHL 145 (179)
Q Consensus 79 ~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~---~KgKdiR~ 145 (179)
+|+.|+| |||||||+.++||+||+++++ ++|+|+|+|+|||+||||||+||++|+ |||||||.
T Consensus 99 -~G~~l~l--~LG~Shpv~~~iP~gI~v~v~-~~t~I~l~G~DKq~Vgq~AA~Ir~~R~PepYKGKGI~y 164 (185)
T 2zjr_E 99 -TGKALEM--NIGYSHPVIIEPPAGVTFAVP-EPTRIDVSGIDKQLVGQVAANVRKVRKPDAYHGKGVRF 164 (185)
T ss_dssp -BTTBCBC--CSSCSSCCBCCCCTTEEEECS-STTEEEEEESSHHHHHHHHHHHHHHTCCCTTTCCBCCC
T ss_pred -cCCEEEE--EeeCCccEEEECCCCeEEEEC-CCCEEEEEecCHHHHHHHHHHHhccCCCCCcCCCcEeE
Confidence 5999999 699999999999999999998 889999999999999999999999995 99999995
No 12
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.4e-49 Score=334.77 Aligned_cols=136 Identities=19% Similarity=0.217 Sum_probs=128.2
Q ss_pred cccccccCCcEEEEEee------eccCCeEEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEEEEEEEEEeceeEEe
Q psy7622 4 RNLNPGGGGGCLYLNKT------YRWEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVT 77 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~------~~~~~~l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~kL~ivgvgyra~v~i 77 (179)
+.|+||||+|+|++.++ ..+++.|.|++|+++|+++|+|||+||||+|||+|||+||+|+|+++|+||||++
T Consensus 64 ~~VtVKGPkG~L~~~~~~~v~i~~~e~~~i~v~~~~~~k~~~a~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~-- 141 (223)
T 3bbo_I 64 QDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATV-- 141 (223)
T ss_dssp SEEEECCSSCCEEEECCSSCEEEECSSSCEEEECSSCCTTHHHHHHHHTTTTTHHHHHTTTCEEECEECCSTTCCEEE--
T ss_pred CEEEEECCCeEEEEEcCCCEEEEEecCCEEEEEcCCCcHHHHHHHHHHHHHhhcEEEeeccCcEEEEEEeeeceEEEe--
Confidence 46899999999999883 4588999999999999999999999999999999999999999999999999986
Q ss_pred ccCCceeEEeccCCceeeEEEeCCCCcEEEecCCCCEEEEEEccHHHHHHHHHHHhhhcc---ccCCceeec
Q psy7622 78 SENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTT---VKNKDIHLN 146 (179)
Q Consensus 78 ~~~G~~l~i~NfLG~shpi~~~IP~GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~~~---~KgKdiR~F 146 (179)
+|+.|+| |||||||+.++||+||+++++ ++|+|+|+|+|||+|||+||+||++|+ |||||||..
T Consensus 142 --~G~~L~L--~LG~SHpv~~~iP~GI~v~v~-~~t~Iii~GiDKq~Vgq~AA~IR~~R~PEPYKGKGI~y~ 208 (223)
T 3bbo_I 142 --DGKELVL--NLGFSHPVKMQIPDSLKVKVE-ENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYS 208 (223)
T ss_dssp --CSSEEEE--CSSCSSCEEEECCSSEEEECS-STTBCEEEESSSHHHHHHHHHTTSSSCCCTTTCCSCEET
T ss_pred --cCCEEEE--EeeCCccEEEECCCCeEEEeC-CCCEEEEEeCCHHHHHHHHHHHhccCCCCCcCCCcEeEC
Confidence 6999999 699999999999999999998 889999999999999999999999995 999999973
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=99.77 E-value=8.3e-20 Score=136.61 Aligned_cols=60 Identities=38% Similarity=0.478 Sum_probs=53.8
Q ss_pred cccccccCCcEEEEEee-e-----ccCCe---EEEEccCCChhhhhHhhhHHHHHhcceeecccCeEEE
Q psy7622 4 RNLNPGGGGGCLYLNKT-Y-----RWEET---FDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYK 63 (179)
Q Consensus 4 ~~~~~~Gp~G~l~~~~~-~-----~~~~~---l~V~~~~~~kk~~a~~GT~rSlI~NMI~GVt~Gf~~k 63 (179)
+.|+||||+|+|++.+. . .+++. |.|++|+++|+++|+|||+||||+|||+|||+||+|.
T Consensus 30 ~~VtVKGPkG~L~~~~~h~~v~i~~e~~~~~~i~v~~~~~~k~~ra~~Gt~RslI~NMI~GVt~Gf~y~ 98 (100)
T 2cql_A 30 RTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGSGPS 98 (100)
T ss_dssp TEEEEEETTEEEEEECCSSCCEEEEECSSSCEEEEECCSSSTHHHHHHHHHHHHHHHHHHHHHTSCCSC
T ss_pred CEEEEECCCceEEEEeccCcEEEEEcCCceeEEEEEccCCCHHHHHHHHHHHHHHHhhhEeecCCEEEc
Confidence 46899999999999995 3 35555 9999999999999999999999999999999999974
No 14
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=85.33 E-value=0.72 Score=33.65 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=19.7
Q ss_pred EEeCCCCcEEEecCCCCEEEEEEccHH
Q psy7622 97 RVKMAPGVKVSNSKQKDELIIEGNDIE 123 (179)
Q Consensus 97 ~~~IP~GV~v~v~~~~t~IiI~GiDKe 123 (179)
.++||+||+|++ +.+.|+++|+-=+
T Consensus 16 pI~IP~gV~V~i--~~~~VtVKGPkG~ 40 (100)
T 2cql_A 16 TVDIPENVDITL--KGRTVIVKGPRGT 40 (100)
T ss_dssp EECCCSSCEEEE--ETTEEEEEETTEE
T ss_pred cEEcCCCCEEEE--eCCEEEEECCCce
Confidence 457899999999 5678999998633
No 15
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.46 E-value=3.5 Score=33.13 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhhc
Q psy7622 123 ENVSRSAALIQQST 136 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~ 136 (179)
..+|-+.|.|++.-
T Consensus 66 a~~gt~rsli~NmI 79 (184)
T 3j21_F 66 AIARTFAAHIRNMI 79 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 35777777777653
No 16
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=70.32 E-value=3.7 Score=33.17 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhhhc
Q psy7622 123 ENVSRSAALIQQST 136 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~ 136 (179)
..+|-++|.|.+.-
T Consensus 66 a~~gt~rsli~NmI 79 (191)
T 3u5e_H 66 AALRTVKSLVDNMI 79 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhe
Confidence 34777777777653
No 17
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=70.32 E-value=3.7 Score=33.15 Aligned_cols=12 Identities=8% Similarity=0.177 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhh
Q psy7622 124 NVSRSAALIQQS 135 (179)
Q Consensus 124 ~Vgq~AA~Ir~~ 135 (179)
.+|-+.|.|.+.
T Consensus 68 ~~gt~rsli~Nm 79 (190)
T 3iz5_F 68 AIRTAISHVQNL 79 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 566677766664
No 18
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=70.08 E-value=3.8 Score=32.80 Aligned_cols=36 Identities=19% Similarity=0.420 Sum_probs=21.6
Q ss_pred eC-CCCcEEEecCCCCEEEEEE--cc---HHHHHHHHHHHhhhc
Q psy7622 99 KM-APGVKVSNSKQKDELIIEG--ND---IENVSRSAALIQQST 136 (179)
Q Consensus 99 ~I-P~GV~v~v~~~~t~IiI~G--iD---Ke~Vgq~AA~Ir~~~ 136 (179)
++ |+.++++. ++++|.++= .+ +...|.++|.|.+.-
T Consensus 33 ~~~~~~v~i~~--~~~~i~v~~~~~~k~~~a~~Gt~rsli~Nmi 74 (178)
T 1vq8_E 33 RLWYPDIDVSV--DGDTVVIESDEDNAKTMSTIGTFQSHIENMF 74 (178)
T ss_dssp ECCCTTCEEEE--ETTEEEEECSCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEECCeEEEEE--ECCEEEEEcCCCCHHHHHHHHHHHHHHcCEE
Confidence 45 56666666 344566651 12 346788888887754
No 19
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=68.91 E-value=3.5 Score=32.92 Aligned_cols=27 Identities=7% Similarity=0.083 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhhcc-----------ccCCceeecCCC
Q psy7622 123 ENVSRSAALIQQSTT-----------VKNKDIHLNPGG 149 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~~-----------~KgKdiR~FlDG 149 (179)
...|.+.|.|.+.-. +-|-|-|..++|
T Consensus 62 a~~Gt~rsli~Nmi~GVt~Gf~~~L~lvGvGyra~~~G 99 (177)
T 1rl6_A 62 ALHGTTRSLLANMVEGVSKGYEKALELVGVGYRASKQG 99 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEET
T ss_pred HHHHHHHHHHhCEEEeEcCCcEEEEEEEeeceEEEecC
Confidence 556667777766432 345555666555
No 20
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=67.68 E-value=3.1 Score=33.60 Aligned_cols=14 Identities=14% Similarity=0.143 Sum_probs=9.1
Q ss_pred HHHHHHHHHHhhhc
Q psy7622 123 ENVSRSAALIQQST 136 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~ 136 (179)
...|-+.|.|.+.-
T Consensus 68 a~~Gt~rsli~NmI 81 (192)
T 2zkr_e 68 ATVRTICSHVQNMI 81 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCEE
Confidence 36677777777643
No 21
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=67.65 E-value=3.8 Score=33.04 Aligned_cols=13 Identities=15% Similarity=0.102 Sum_probs=8.6
Q ss_pred HHHHHHHHHhhhc
Q psy7622 124 NVSRSAALIQQST 136 (179)
Q Consensus 124 ~Vgq~AA~Ir~~~ 136 (179)
.+|-++|.|.+.-
T Consensus 67 ~~gt~rsli~NmI 79 (188)
T 4a17_E 67 VLQSIASQIKNMI 79 (188)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhe
Confidence 4677777777653
No 22
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=66.77 E-value=3.6 Score=32.89 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhhhcc-----------ccCCceeecCCC
Q psy7622 123 ENVSRSAALIQQSTT-----------VKNKDIHLNPGG 149 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~~-----------~KgKdiR~FlDG 149 (179)
..+|-+.|.|++.-. +-|-+.|..++|
T Consensus 63 a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~~g 100 (180)
T 3v2d_H 63 SLHGLTRTLIANAVKGVSEGYSKELLIKGIGYRARLVG 100 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEEESTTCEEEEET
T ss_pred HHHHHHHHHHhhhEEeecCCcEEEEEEEEEeeEEEECC
Confidence 457778888876532 345555666655
No 23
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=64.52 E-value=4.2 Score=33.54 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhcc-----------ccCCceeecCCC
Q psy7622 123 ENVSRSAALIQQSTT-----------VKNKDIHLNPGG 149 (179)
Q Consensus 123 e~Vgq~AA~Ir~~~~-----------~KgKdiR~FlDG 149 (179)
...|.+.|.|.+.-. +-|-|-|...+|
T Consensus 90 a~~Gt~rslI~NMI~GVt~Gf~kkLelvGvGYra~~~G 127 (212)
T 1nkw_E 90 ALHGLTRTLVANAVKGVSDGYTINLELRGVGFRAKLTG 127 (212)
T ss_pred HHHHHHHHHhhCEEEeeccCeEEEEEEeeeeeEEEcCC
Confidence 456777777766442 345565666655
No 24
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=58.21 E-value=3.9 Score=33.98 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=12.0
Q ss_pred EeCCCCcEEEecCCCCEEEEEEc
Q psy7622 98 VKMAPGVKVSNSKQKDELIIEGN 120 (179)
Q Consensus 98 ~~IP~GV~v~v~~~~t~IiI~Gi 120 (179)
+.||+||+|++ +++.|+++|+
T Consensus 51 I~IP~gV~V~i--~~~~VtVKGP 71 (223)
T 3bbo_I 51 IAVPSNVTIAL--EGQDLKVKGP 71 (223)
T ss_dssp CCCSTTSCEEE--SSSEEEECCS
T ss_pred eecCCCCEEEE--eCCEEEEECC
Confidence 45666666666 3445555554
No 25
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=56.60 E-value=3.6 Score=32.81 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhcc-----------ccCCceeecCCC
Q psy7622 122 IENVSRSAALIQQSTT-----------VKNKDIHLNPGG 149 (179)
Q Consensus 122 Ke~Vgq~AA~Ir~~~~-----------~KgKdiR~FlDG 149 (179)
+..+|-+.|.|.+.-. +-|-+.|..+.|
T Consensus 61 ~a~~gt~rsli~NmI~GVt~Gf~~kL~lvgvgyra~~~g 99 (176)
T 3r8s_G 61 WAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKG 99 (176)
T ss_dssp HHHHHHHHHHHHHTTTHHHHCEEECEEEESTTCEEECSS
T ss_pred HHHHHHHHHHHHhHhhhcccCeEEEEEEeeeeeEEEeCC
Confidence 4678888888887642 345566666655
No 26
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=53.52 E-value=3.7 Score=33.08 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=13.6
Q ss_pred EeCCCCcEEEecCCCCEEEEEEc
Q psy7622 98 VKMAPGVKVSNSKQKDELIIEGN 120 (179)
Q Consensus 98 ~~IP~GV~v~v~~~~t~IiI~Gi 120 (179)
+.||+||+|++ +.+.|+++|+
T Consensus 9 I~IP~gV~V~i--~~~~VtVkGp 29 (185)
T 2zjr_E 9 IAVPSGVTVNA--QDGVFKVKGP 29 (185)
T ss_dssp BCCCTTCCEEC--CTTCCEECCS
T ss_pred eecCCCCEEEE--eCCEEEEECC
Confidence 46777887777 3445666664
No 27
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=47.65 E-value=33 Score=24.41 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=25.2
Q ss_pred CcEEEecCCCCEEEEEEccHHHHHHHHHHHhhh
Q psy7622 103 GVKVSNSKQKDELIIEGNDIENVSRSAALIQQS 135 (179)
Q Consensus 103 GV~v~v~~~~t~IiI~GiDKe~Vgq~AA~Ir~~ 135 (179)
++.+.+|...+.|+|+|. ++.|-...+.|+..
T Consensus 58 ~v~I~fp~~~~~ItI~G~-~~~V~~a~~~I~~~ 89 (102)
T 2ctf_A 58 KVHIEFTEGEDKITLEGP-TEDVSVAQEQIEGM 89 (102)
T ss_dssp SSEEEECSSSCEEEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCEEEEECC-HHHHHHHHHHHHHH
Confidence 567777633468999999 99999988888765
No 28
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=37.11 E-value=13 Score=27.11 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHHhhhccccCCceeecCC
Q psy7622 120 NDIENVSRSAALIQQSTTVKNKDIHLNPG 148 (179)
Q Consensus 120 iDKe~Vgq~AA~Ir~~~~~KgKdiR~FlD 148 (179)
.|||.+-+.| +=++.-.|||+-||.+.|
T Consensus 73 ~~KErILkaa-r~k~~vtykg~pirlsaD 100 (100)
T 2w7a_A 73 EMKEKMLRAA-REKGRVTLKGKPIRLTVD 100 (100)
T ss_dssp HHHHHHHHHH-HHHCCEEETTEEEEEEEC
T ss_pred ccHHHHHHHH-HHhCceeeCCcceeecCC
Confidence 5789888755 434345799999999987
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=31.23 E-value=76 Score=21.27 Aligned_cols=31 Identities=29% Similarity=0.339 Sum_probs=22.5
Q ss_pred CcEEEecCCCC--------EEEEEEccHHHHHHHHHHHhhh
Q psy7622 103 GVKVSNSKQKD--------ELIIEGNDIENVSRSAALIQQS 135 (179)
Q Consensus 103 GV~v~v~~~~t--------~IiI~GiDKe~Vgq~AA~Ir~~ 135 (179)
|+++.++ +.. .+.|.| |.+.|-.....|+..
T Consensus 44 ga~I~i~-~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i 82 (85)
T 2opv_A 44 GVKMILI-QDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDI 82 (85)
T ss_dssp TCEEEEC-SSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHH
T ss_pred CCEEEEc-CCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 6666665 222 299999 999998877777764
No 30
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A
Probab=30.12 E-value=88 Score=23.45 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred EEEEEEeceeEEeccCCceeEEeccCCceeeEEEeCC----CCcEEEecCCCCEEEEEEccHH
Q psy7622 65 RAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMA----PGVKVSNSKQKDELIIEGNDIE 123 (179)
Q Consensus 65 ~ivgvgyra~v~i~~~G~~l~i~NfLG~shpi~~~IP----~GV~v~v~~~~t~IiI~GiDKe 123 (179)
.+.+.+|+- +.+.+.++.+ .+.+++| +.|+|++ .++.|+|+|.-++
T Consensus 50 ~~~~~~~~p-vdi~e~~~~~----------~v~~dlPG~~~edi~V~~--~~~~L~I~g~~~~ 99 (161)
T 4eld_A 50 QISGKGFMP-ISIIEGDQHI----------KVIAWLPGVNKEDIILNA--VGDTLEIRAKRSP 99 (161)
T ss_dssp EEEEESCCC-EEEEECSSEE----------EEEEECTTCCGGGEEEEE--ETTEEEEEEECCC
T ss_pred cccCCcccc-eeEEEeCCEE----------EEEEECCCCChHhEEEEE--ECCEEEEEEEEcc
Confidence 345566654 4334344433 3445665 7899999 4679999996543
No 31
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=28.20 E-value=95 Score=20.17 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCcEEEecCCCC----EEEEEEccHHHHHHHHHHHhhh
Q psy7622 102 PGVKVSNSKQKD----ELIIEGNDIENVSRSAALIQQS 135 (179)
Q Consensus 102 ~GV~v~v~~~~t----~IiI~GiDKe~Vgq~AA~Ir~~ 135 (179)
.|+++.++ +.. .+.|.|. .+.|-+.-+.|+..
T Consensus 34 tg~~I~i~-~~g~~~~~V~I~G~-~~~v~~A~~~I~~i 69 (71)
T 1vig_A 34 YKVSVRIP-PDSEKSNLIRIEGD-PQGVQQAKRELLEL 69 (71)
T ss_dssp TCCEEECC-CCCSSSEEEEEEES-SHHHHHHHHHHHHT
T ss_pred HCCEEEEC-CCCCcccEEEEEcC-HHHHHHHHHHHHHH
Confidence 47777776 333 8999999 47777766666654
No 32
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=24.84 E-value=27 Score=25.56 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHhhhcc
Q psy7622 121 DIENVSRSAALIQQSTT 137 (179)
Q Consensus 121 DKe~Vgq~AA~Ir~~~~ 137 (179)
+.+.+.||||.||++|.
T Consensus 30 ~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 30 SSQEIQQFAALLHEYRN 46 (98)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHc
Confidence 46789999999999985
No 33
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=24.37 E-value=42 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.390 Sum_probs=9.7
Q ss_pred cCCceeecCCCC
Q psy7622 139 KNKDIHLNPGGG 150 (179)
Q Consensus 139 KgKdiR~FlDG~ 150 (179)
.+.++|+|..++
T Consensus 29 ~~~~lRi~v~~g 40 (114)
T 2apn_A 29 TDLKLRVYITGG 40 (114)
T ss_dssp SSCEEEECCCCS
T ss_pred CCceEEEEEeCC
Confidence 467899999873
No 34
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=23.91 E-value=86 Score=21.92 Aligned_cols=33 Identities=18% Similarity=0.380 Sum_probs=24.4
Q ss_pred CcEEEec-C--CCCEEEEEEccHHHHHHHHHHHhhhc
Q psy7622 103 GVKVSNS-K--QKDELIIEGNDIENVSRSAALIQQST 136 (179)
Q Consensus 103 GV~v~v~-~--~~t~IiI~GiDKe~Vgq~AA~Ir~~~ 136 (179)
|+++.+| + ..+.+.|.|.+. .|-+.-+.|+...
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~iv 83 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHLA 83 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHHH
Confidence 6667766 1 235899999988 8887777888764
No 35
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=23.88 E-value=60 Score=22.99 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=19.3
Q ss_pred eeeEEEeCCCCcEEEecCCCCEEEEE
Q psy7622 93 KYIRRVKMAPGVKVSNSKQKDELIIE 118 (179)
Q Consensus 93 shpi~~~IP~GV~v~v~~~~t~IiI~ 118 (179)
..|+.+.+|+|+++.-- +|+.|.+.
T Consensus 58 ~~~V~v~~P~G~~lv~v-sP~~V~~~ 82 (90)
T 3lyw_A 58 DYEVKVEPIPNIKIVEI-SPRVVTLQ 82 (90)
T ss_dssp EEECEECCCTTEEEEEE-ESSEEEEE
T ss_pred eEEEEEECCCCCEEEEE-ccceEEEE
Confidence 46788999999998764 77877653
No 36
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Probab=23.03 E-value=85 Score=21.33 Aligned_cols=30 Identities=17% Similarity=0.312 Sum_probs=21.2
Q ss_pred ceeeEEEeCC----CCcEEEecCCCCEEEEEEccHH
Q psy7622 92 EKYIRRVKMA----PGVKVSNSKQKDELIIEGNDIE 123 (179)
Q Consensus 92 ~shpi~~~IP----~GV~v~v~~~~t~IiI~GiDKe 123 (179)
..+.+.+.+| +.|+|++ .++.|+|+|.-++
T Consensus 14 ~~~~v~~~lPG~~~edi~v~~--~~~~L~I~g~~~~ 47 (100)
T 3gla_A 14 NHFVLYADLPGIDPSQIEVQM--DKGILSIRGERKS 47 (100)
T ss_dssp SEEEEEEECTTSCGGGCEEEE--ETTEEEEEEEECC
T ss_pred CEEEEEEECCCCCHHHEEEEE--ECCEEEEEEEEcC
Confidence 3444556665 6899999 5779999997543
No 37
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=22.36 E-value=44 Score=24.40 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=9.6
Q ss_pred CCceeecCCCCC
Q psy7622 140 NKDIHLNPGGGG 151 (179)
Q Consensus 140 gKdiR~FlDG~~ 151 (179)
+.++|+|..+++
T Consensus 31 ~~~LRv~V~~gG 42 (124)
T 1nwb_A 31 NPILRIRVVPGG 42 (124)
T ss_dssp SCEEEECCCCCC
T ss_pred CceEEEEEEcCC
Confidence 668999999843
No 38
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.33 E-value=81 Score=22.59 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=24.2
Q ss_pred CEEEEEEccHHHHHHHHHHHhhhccccC
Q psy7622 113 DELIIEGNDIENVSRSAALIQQSTTVKN 140 (179)
Q Consensus 113 t~IiI~GiDKe~Vgq~AA~Ir~~~~~Kg 140 (179)
-+|.|+|.|...+-++|+.|-.+.+.+|
T Consensus 4 irI~LkS~d~~~Ld~~~~~i~~~ak~~g 31 (102)
T 3j20_L 4 ARIKIASTNVRSLDEVANQIKQIAERTG 31 (102)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHSSS
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999876544
No 39
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=21.77 E-value=44 Score=25.34 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.7
Q ss_pred EEEEEccHHHHHHHHHHHhhhccccCCceeecCCCCC
Q psy7622 115 LIIEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGG 151 (179)
Q Consensus 115 IiI~GiDKe~Vgq~AA~Ir~~~~~KgKdiR~FlDG~~ 151 (179)
|.-++.|.+-|.+++..+++. +.|+|+|+|.+.
T Consensus 21 ISys~~D~~fv~~L~~~Le~~----~~g~~~~~~~rd 53 (160)
T 2js7_A 21 ICYCPSDIQFVQEMIRQLEQT----NYRLKLCVSDRD 53 (160)
T ss_dssp EECCGGGHHHHHHHHHHHHTS----SSCCCCEESCCS
T ss_pred EEcccccHHHHHHHHHHHhcC----CCceEEEEeCCC
Confidence 445688999999988888774 678999998875
No 40
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Probab=21.77 E-value=1e+02 Score=20.68 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=16.0
Q ss_pred CCCcEEEecCCCCEEEEEEccHH
Q psy7622 101 APGVKVSNSKQKDELIIEGNDIE 123 (179)
Q Consensus 101 P~GV~v~v~~~~t~IiI~GiDKe 123 (179)
|+.|+|++ .++.|+|+|--++
T Consensus 20 ~edi~V~v--~~~~L~I~g~~~~ 40 (85)
T 3q9p_A 20 PDELTVKT--KDGVVEITGKHAA 40 (85)
T ss_dssp CSEEEEEE--ETTEEEEEEEEC-
T ss_pred hHHEEEEE--ECCEEEEEEEEcc
Confidence 37899998 4678999997554
No 41
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.43 E-value=1.3e+02 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCcEEEecCCC----CEEEEEEccHHHHHHHHHHHhhhc
Q psy7622 102 PGVKVSNSKQK----DELIIEGNDIENVSRSAALIQQST 136 (179)
Q Consensus 102 ~GV~v~v~~~~----t~IiI~GiDKe~Vgq~AA~Ir~~~ 136 (179)
.|+++.++ ++ +.|.|.|.+ +.|-+.-+.|+...
T Consensus 46 tg~~I~I~-~~g~~~~~V~I~G~~-e~v~~A~~~I~~i~ 82 (104)
T 2ctk_A 46 FEVNIHVP-APELQSDIIAITGLA-ANLDRAKAGLLERV 82 (104)
T ss_dssp TCCEEECC-CTTTTCCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred HCCEEEec-CCCCCcceEEEEcCH-HHHHHHHHHHHHHH
Confidence 38888887 33 389999997 88877777777654
No 42
>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}
Probab=21.17 E-value=97 Score=21.38 Aligned_cols=29 Identities=7% Similarity=0.131 Sum_probs=20.6
Q ss_pred eeeEEEeCC----CCcEEEecCCCCEEEEEEccHH
Q psy7622 93 KYIRRVKMA----PGVKVSNSKQKDELIIEGNDIE 123 (179)
Q Consensus 93 shpi~~~IP----~GV~v~v~~~~t~IiI~GiDKe 123 (179)
.+.+.+.+| +.|+|++ .++.|+|+|--++
T Consensus 17 ~~~v~~~lPG~~~edi~v~~--~~~~L~I~g~~~~ 49 (102)
T 4fei_A 17 HLDLLLDVPGVDAGTLALAE--DGGQLTVSGERPG 49 (102)
T ss_dssp EEEEEEECTTCCGGGCEEEE--ETTEEEEEEEECC
T ss_pred EEEEEEECCCCchHhEEEEE--ECCEEEEEEEEec
Confidence 344455665 6889998 5778999997643
Done!