RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7622
(179 letters)
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F
1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 3jyw_H
Length = 191
Score = 169 bits (431), Expect = 2e-54
Identities = 59/118 (50%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSEN--NTLLEI 86
V NG +K +AA+RTV S + NM+ GVTKG+ YKMR YAHFPIN E +E+
Sbjct: 55 VAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEV 114
Query: 87 RNFLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
RNFLG+K IR V + GV + S KDE+++ GN +E+VS++AA +QQ V+NKDI
Sbjct: 115 RNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDI 172
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 192
Score = 167 bits (425), Expect = 2e-53
Identities = 84/116 (72%), Positives = 96/116 (82%), Gaps = 1/116 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
VD G +KE+A VRT+CSH+ NM+KGVT GF YKMR+ YAHFPIN V EN +L+EIRN
Sbjct: 57 VDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRN 116
Query: 89 FLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
FLGEKYIRRV+M PGV S S+ QKDELI+EGNDIE VS SAALIQQ+TTVKNKDI
Sbjct: 117 FLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDI 172
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_E 4a1c_E 4a1e_E
Length = 188
Score = 165 bits (420), Expect = 1e-52
Identities = 51/116 (43%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
+ ++KE A ++++ S I NM++GVT+G+ +KM+ A+AHFPI +++ + +EI++
Sbjct: 55 LQIWQASRKERAVLQSIASQIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKH 114
Query: 89 FLGEKYIRRVKMAPGVKVSNS-KQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
FLGEK IRR++ PGVK+S ++K+ L ++G D+ NVS++ ALI QS VK KDI
Sbjct: 115 FLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVSQTCALIHQSCLVKEKDI 170
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_F
Length = 190
Score = 164 bits (417), Expect = 3e-52
Identities = 68/121 (56%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTL 83
VD GT++ +AA+RT SH+ N++ GVTKG+ YKMR YAHFPIN + +NT
Sbjct: 51 GRKLQVDAWFGTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTA 110
Query: 84 LEIRNFLGEKYIRRVKMAPGVKVSNSK-QKDELIIEGNDIENVSRSAALIQQSTTVKNKD 142
+EIRNFLGEK +R+V M GV + S+ KDEL+++GNDIE VSRSAALI Q VKNKD
Sbjct: 111 IEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKD 170
Query: 143 I 143
I
Sbjct: 171 I 171
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB:
1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E*
1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E*
1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Length = 178
Score = 161 bits (409), Expect = 3e-51
Identities = 42/115 (36%), Positives = 62/115 (53%), Gaps = 4/115 (3%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKMRAAYAHFPINCVTSENNTLLEIRN 88
++ D K ++ + T SHI NM GVT+G+ Y M Y+HFP+ + + I N
Sbjct: 50 IESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDE--VVIEN 107
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALIQQSTTVKNKDI 143
FLGEK RR + V +EL + G DIE V ++AA I+Q T + +KD+
Sbjct: 108 FLGEKAPRRTTIHGDTDV--EIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDV 160
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha
and beta (A+B), structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: d.141.1.1
Length = 100
Score = 54.3 bits (131), Expect = 2e-10
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGF 60
VD G +KE+A VRT+CSH+ NM+KGVT G
Sbjct: 64 VDKWWGNRKELATVRTICSHVQNMIKGVTLGS 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 7e-05
Identities = 27/165 (16%), Positives = 46/165 (27%), Gaps = 50/165 (30%)
Query: 20 TYR-----WEETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKG----FLYKMR----A 66
Y+ +E+ F + D C + +M K + + +
Sbjct: 17 QYKDILSVFEDAFVDNFD-------------CKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 67 AYAHFPINCVTSEN------NTLLEIR-NFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 119
F E +L I FL + + +Q+D L
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--- 120
Query: 120 NDIE-----NVSRSAALIQQSTTVKNKDIHLNPGG-----GGGGC 154
ND + NVSR +Q ++ + L P G G
Sbjct: 121 NDNQVFAKYNVSR----LQPYLKLRQALLELRPAKNVLIDGVLGS 161
Score = 34.4 bits (78), Expect = 0.016
Identities = 26/238 (10%), Positives = 62/238 (26%), Gaps = 90/238 (37%)
Query: 2 CIRNLNPG------GGGGC----LYLN--KTYRWEETFD-------VDCDNGTKKEIAAV 42
+ L P G G + L+ +Y+ + D + N + + +
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 43 RTVCSHIS-----------------NMLKGVTKGFLYKMRAAYAH--------------- 70
+ + I + ++ + L Y +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWN 260
Query: 71 -FPINC---VTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIE--GNDIEN 124
F ++C +T+ ++ +FL + + + L+++ ++
Sbjct: 261 AFNLSCKILLTTRFK---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 125 VSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYL--------NKTYRWEETFDVDCDKK 174
+ R NP L + W+ V+CDK
Sbjct: 318 LPREVLTT-------------NP-------RRLSIIAESIRDGLATWDNWKHVNCDKL 355
Score = 27.9 bits (61), Expect = 2.1
Identities = 21/197 (10%), Positives = 46/197 (23%), Gaps = 54/197 (27%)
Query: 15 LYLNKTYR---------WE----ETFDVDC-------DNGTKKEIAAVRTVCSHISNMLK 54
L +K Y F++ C ++A T + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 55 GVTKGFLYKMRAAYAHFPINCVTSE---NNTLL------EIRNFLGE-KYIRRVKMAPGV 104
+T + + Y + E N IR+ L + V
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------ 350
Query: 105 KVSNSKQKDELI------IEGNDIENVSRSAALIQQSTTVKNKDIHLNPGGGGGGCLYLN 158
N + +I +E + + ++ S + + L ++ +
Sbjct: 351 ---NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---------IWFD 398
Query: 159 KTYRWEETFDVDCDKKC 175
K
Sbjct: 399 VIKSDVMVVVNKLHKYS 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.030
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 24/86 (27%)
Query: 40 AAVRTVCSHISNMLKGVTKGFLYKMRAA-YAHFPINC-----VTSEN----NTLLEIRNF 89
A++ V + T + Y N V + + +T+ + NF
Sbjct: 1824 EALQYVVERVGKR----TGWLV---EIVNY-----NVENQQYVAAGDLRALDTVTNVLNF 1871
Query: 90 LGEKYIRRVKMAPGVKVSNSKQKDEL 115
+ + I +++ +S + + L
Sbjct: 1872 IKLQKIDIIELQ--KSLSLEEVEGHL 1895
Score = 30.8 bits (69), Expect = 0.25
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 18/66 (27%)
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDEL-----------IIEGNDIENVSRSAALIQQSTT 137
FLG Y+ + V+ S Q D++ +EGNDI ++ +T
Sbjct: 64 FLG--YV-----SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 138 VKNKDI 143
VK K++
Sbjct: 117 VKTKEL 122
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer
RNA, 23S ribosomal subunit, ribosome recycling factor,
RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E
1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G*
2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G
2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Length = 176
Score = 28.6 bits (65), Expect = 0.72
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 43/122 (35%)
Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKGFLYKM-------RAA-----------YAH 70
+G A T + +++M+ GVT+GF K+ RAA ++H
Sbjct: 51 FGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNVINLSLGFSH 110
Query: 71 FPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAA 130
P++ ++ G+ Q E++++G D + + + AA
Sbjct: 111 -PVD-----------------------HQLPAGITAECPTQ-TEIVLKGADKQVIGQVAA 145
Query: 131 LI 132
+
Sbjct: 146 DL 147
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 27.2 bits (60), Expect = 0.80
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 152 GGCLYLNKTYRWEETFDVDCDKKCKC 177
G C+ + Y ++ + + + C C
Sbjct: 8 GSCVQDGQRYNDKDVWKPEPCRICVC 33
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY
structure, peptidyl-transferase, peptide bond formation;
3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB:
1sm1_E*
Length = 212
Score = 28.7 bits (65), Expect = 0.88
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 43/104 (41%)
Query: 47 SHISNMLKGVTKGFLYKM-------RAA-----------YAHFPINCVTSENNTLLEIRN 88
+ ++N +KGV+ G+ + RA Y+H P+
Sbjct: 97 TLVANAVKGVSDGYTINLELRGVGFRAKLTGKALEMNIGYSH-PVI-------------- 141
Query: 89 FLGEKYIRRVKMAPGVKVSNSKQKDELIIEGNDIENVSRSAALI 132
++ GV + + + + G D + V + AA +
Sbjct: 142 ---------IEPPAGVTFAVPEP-TRIDVSGIDKQLVGQVAANV 175
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein
structure initiative; NMR {Salmonella typhimurium}
Length = 61
Score = 26.7 bits (60), Expect = 1.0
Identities = 7/25 (28%), Positives = 13/25 (52%), Gaps = 5/25 (20%)
Query: 35 TKKEIAA-----VRTVCSHISNMLK 54
T I+ ++TV +H NM++
Sbjct: 15 TNHGISEKLHISIKTVETHRMNMMR 39
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E*
1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E*
3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H
1vp0_H
Length = 185
Score = 27.8 bits (63), Expect = 1.5
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 47 SHISNMLKGVTKGF 60
+ ++N +KGV+ G+
Sbjct: 70 TLVANAVKGVSDGY 83
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H
2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H
2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Length = 180
Score = 27.8 bits (63), Expect = 1.5
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 47 SHISNMLKGVTKGF 60
+ I+N +KGV++G+
Sbjct: 70 TLIANAVKGVSEGY 83
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 223
Score = 28.0 bits (63), Expect = 1.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 47 SHISNMLKGVTKGF 60
+ NM+ GV+KGF
Sbjct: 113 TLTDNMVVGVSKGF 126
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin
resistance, alpha/beta protein; 2.00A {Geobacillus
stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB:
1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H
1eg0_J 487d_J
Length = 177
Score = 27.8 bits (63), Expect = 1.6
Identities = 7/14 (50%), Positives = 13/14 (92%)
Query: 47 SHISNMLKGVTKGF 60
S ++NM++GV+KG+
Sbjct: 69 SLLANMVEGVSKGY 82
>2yhf_A C-type lectin domain family 5 member A; immune system; 1.90A {Homo
sapiens}
Length = 118
Score = 27.0 bits (60), Expect = 2.1
Identities = 4/33 (12%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 145 LNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
+ C + T ++ CD +
Sbjct: 83 VTNQNQNFNCATIGLTKTFD---AASCDISYRR 112
Score = 26.2 bits (58), Expect = 3.9
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 3/27 (11%)
Query: 7 NPGGGGGCLYLNKTYRWEETFDVDCDN 33
N C + T ++ CD
Sbjct: 85 NQNQNFNCATIGLTKTFD---AASCDI 108
>3c8j_A Natural killer cell receptor LY49C; MHC, virus, immune system;
2.60A {Mus musculus} SCOP: d.169.1.1 PDB: 3c8k_D 1p4l_D
1ja3_A 1p1z_D
Length = 203
Score = 26.8 bits (59), Expect = 3.3
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 136 TTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
K GC++L+K R D+DC+ C
Sbjct: 155 GPSKLDMKIKKMNFKSRGCVFLSKA-RI---EDIDCNIPYYC 192
>1dv8_A Asialoglycoprotein receptor 1; C-type lectin CRD, signaling
protein; 2.30A {Homo sapiens} SCOP: d.169.1.1
Length = 128
Score = 26.2 bits (58), Expect = 4.2
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 142 DIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKK----CKC 177
D + + GGG C + RW D C + C+
Sbjct: 90 DWYGHGLGGGEDCAHFTDDGRW---NDDVCQRPYRWVCET 126
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 26.4 bits (58), Expect = 5.1
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 136 TTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
K + GGC+ L+KT R + +CDK C
Sbjct: 142 GPSKLALNTMKYNIRDGGCMLLSKT-RL---DNDNCDKSFIC 179
>3g8k_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.00A {Mus musculus} PDB:
1qo3_C 3cad_A
Length = 130
Score = 25.8 bits (57), Expect = 5.2
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 136 TTVKNKDIHLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
K + GGC+ L+KT R + +CDK C
Sbjct: 82 GPSKLALNTMKYNIRDGGCMLLSKT-RL---DNDNCDKSFIC 119
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory
proteins, LUXR family, structural genomics; 2.04A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 258
Score = 26.1 bits (57), Expect = 6.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 35 TKKEIAA-----VRTVCSHISNMLK 54
+ KEIAA V TV H N+L+
Sbjct: 214 SSKEIAATLYISVNTVNRHRQNILE 238
>2asu_B Hepatocyte growth factor-like protein; serine proteinase,
beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}
Length = 234
Score = 26.0 bits (58), Expect = 6.7
Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 69 AHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELII---EGNDIENV 125
C +S + L +LG + P ++ + ++ G+ +
Sbjct: 38 RQ----CFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAK----MVCGPSGSQL--- 86
Query: 126 SRSAALIQQSTTVK-NKDIHL 145
L++ +V N+ + L
Sbjct: 87 ----VLLKLERSVTLNQRVAL 103
>3hup_A Early activation antigen CD69; C-type lectin-like domain, disulfide
bond, glycoprotein, LEC membrane, phosphoprotein,
signal-anchor, transmembrane; 1.37A {Homo sapiens} PDB:
1e87_A 1e8i_A 3cck_A
Length = 130
Score = 25.1 bits (55), Expect = 9.0
Identities = 6/34 (17%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 144 HLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
+ G C++L T ++C+K
Sbjct: 94 NWFNVTGSDKCVFLKNT-EV---SSMECEKNLYW 123
>3ff7_C Killer cell lectin-like receptor subfamily G member 1;
KLRG1-cadherin complex, calcium, cell adhesion, cell
junction, cell membrane; 1.80A {Homo sapiens}
Length = 112
Score = 25.0 bits (55), Expect = 9.4
Identities = 4/34 (11%), Positives = 8/34 (23%), Gaps = 4/34 (11%)
Query: 144 HLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
++ C +NK C+
Sbjct: 79 RISSNSFVQTCGAINKN-GL---QASSCEVPLHW 108
>3rs1_A C-type lectin domain family 2 member I; C-type lectin-like, ligand
of NK receptor, natural killer CE receptors, surface of
activated T lymphocytes; 1.94A {Mus musculus}
Length = 122
Score = 25.1 bits (55), Expect = 9.9
Identities = 7/34 (20%), Positives = 10/34 (29%), Gaps = 4/34 (11%)
Query: 144 HLNPGGGGGGCLYLNKTYRWEETFDVDCDKKCKC 177
++NP G G YL+ R
Sbjct: 87 NMNPILGVGRYAYLSSD-RI---SSSRSYINRMW 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.420
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,778,458
Number of extensions: 150982
Number of successful extensions: 317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 39
Length of query: 179
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 92
Effective length of database: 4,272,666
Effective search space: 393085272
Effective search space used: 393085272
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.6 bits)