RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7622
         (179 letters)



>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 93

 Score =  130 bits (328), Expect = 2e-40
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)

Query: 60  FLYKMRAAYAHFPINCVTSENNTLLEIRNFLGEKYIRRVKMAPGVKVSNSKQKDELIIEG 119
           + Y M   Y+HFP+      +   + I NFLGEK  RR  +     V      +EL + G
Sbjct: 1   WEYGMEVFYSHFPMQVNVEGDE--VVIENFLGEKAPRRTTIHGDTDVEIDG--EELTVSG 56

Query: 120 NDIENVSRSAALIQQSTTVKNKDI 143
            DIE V ++AA I+Q T + +KD+
Sbjct: 57  PDIEAVGQTAADIEQLTRINDKDV 80


>d2cqla1 d.141.1.1 (A:1-87) Ribosomal protein L6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 87

 Score = 43.4 bits (102), Expect = 6e-07
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 29 VDCDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
          VD   G +KE+A VRT+CSH+ NM+KGVT G
Sbjct: 57 VDKWWGNRKELATVRTICSHVQNMIKGVTLG 87


>d2j01h1 d.141.1.1 (H:12-82) Ribosomal protein L6 {Thermus
          thermophilus [TaxId: 274]}
          Length = 71

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
          E    V+  +  ++  +      + I+N +KGV++G
Sbjct: 36 EGVVRVERPSDERRHKSLHGLTRTLIANAVKGVSEG 71


>d1rl6a1 d.141.1.1 (A:7-81) Ribosomal protein L6 {Bacillus
          stearothermophilus [TaxId: 1422]}
          Length = 75

 Score = 38.7 bits (90), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
               V   +  K   A   T  S ++NM++GV+KG
Sbjct: 40 GNVITVTRPSDEKHHRALHGTTRSLLANMVEGVSKG 75


>d2zjre2 d.141.1.1 (E:5-82) Ribosomal protein L6 {Deinococcus
          radiodurans [TaxId: 1299]}
          Length = 78

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
           +   V+  +  +K  A      + ++N +KGV+ G
Sbjct: 43 GDQLLVERPSDAQKHRALHGLTRTLVANAVKGVSDG 78


>d2qamg1 d.141.1.1 (G:1-81) Ribosomal protein L6 {Escherichia coli
          [TaxId: 562]}
          Length = 81

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 24 EETFDVDCDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
          + T      +G     A   T  + +++M+ GVT+G
Sbjct: 46 DNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEG 81


>d1vqoe1 d.141.1.1 (E:1-79) Ribosomal protein L6 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 79

 Score = 36.4 bits (84), Expect = 2e-04
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 31 CDNGTKKEIAAVRTVCSHISNMLKGVTKG 59
           D    K ++ + T  SHI NM  GVT+G
Sbjct: 51 SDEDNAKTMSTIGTFQSHIENMFHGVTEG 79


>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 30.7 bits (69), Expect = 0.017
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 152 GGCLYLNKTYRWEETFDVDCDKKCKC 177
           G C+   + Y  ++ +  +  + C C
Sbjct: 8   GSCVQDGQRYNDKDVWKPEPCRICVC 33



 Score = 25.7 bits (56), Expect = 1.2
 Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 6/30 (20%)

Query: 12 GGCLYLNKTYRWEETFDVD------CDNGT 35
          G C+   + Y  ++ +  +      CD GT
Sbjct: 8  GSCVQDGQRYNDKDVWKPEPCRICVCDTGT 37


>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR,
          C-terminal domain {Pseudomonas fluorescens [TaxId:
          294]}
          Length = 70

 Score = 25.0 bits (55), Expect = 1.6
 Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 5/25 (20%)

Query: 35 TKKEIAA-----VRTVCSHISNMLK 54
            K+IA        TV  H  N+++
Sbjct: 29 MNKQIAGELGIAEVTVKVHRHNIMQ 53


>d1t8da1 d.169.1.1 (A:1-143) Low affinity immunoglobulin epsilon Fc
           receptor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 143

 Score = 24.2 bits (51), Expect = 8.0
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)

Query: 146 NPGGGGGGCLYLNKTYRWEETFDVDCDKKCK 176
                G  C+ +  + RW    D  CD+K  
Sbjct: 96  TSRSQGEDCVMMRGSGRW---NDAFCDRKLG 123


>d2msba_ d.169.1.1 (A:) Mannose-binding protein A, C-lectin domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 112

 Score = 23.8 bits (50), Expect = 9.6
 Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 3/29 (10%)

Query: 146 NPGGGGGGCLYLNKTYRWEETFDVDCDKK 174
           N  G G  C+ +     W    D+ C   
Sbjct: 79  NDHGSGEDCVTIVDNGLW---NDISCQAS 104


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.420 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 703,882
Number of extensions: 30723
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 27
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)