BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7627
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AP3|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|C Chain C, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
pdb|3AP3|D Chain D, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap
Length = 355
Score = 216 bits (550), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 120/149 (80%)
Query: 10 VINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHS 69
V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+ YLS +FP +KF+ MVRDGRA+VHS
Sbjct: 110 VLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLLMVRDGRASVHS 169
Query: 70 IISRKVTITGFDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRR 129
+I+RKVTI GFDL SYR CL KWN+AI +MY +C+ VG +C+ VYYEQLVLHP + L+
Sbjct: 170 MITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCLPVYYEQLVLHPRRSLKL 229
Query: 130 ILQFFDLGWNSSVLHHEEMINKPGGVFLS 158
IL F + W+ +VLHHE++I KPGGV LS
Sbjct: 230 ILDFLGIAWSDAVLHHEDLIGKPGGVSLS 258
>pdb|3AP1|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP1|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap And C4 Peptide
pdb|3AP2|A Chain A, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
pdb|3AP2|B Chain B, Crystal Structure Of Human Tyrosylprotein
Sulfotransferase-2 Complexed With Pap,C4 Peptide, And
Phosphate Ion
Length = 337
Score = 215 bits (548), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 96/149 (64%), Positives = 120/149 (80%)
Query: 10 VINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHS 69
V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+ YLS +FP +KF+ MVRDGRA+VHS
Sbjct: 110 VLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLLMVRDGRASVHS 169
Query: 70 IISRKVTITGFDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRR 129
+I+RKVTI GFDL SYR CL KWN+AI +MY +C+ VG +C+ VYYEQLVLHP + L+
Sbjct: 170 MITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCLPVYYEQLVLHPRRSLKL 229
Query: 130 ILQFFDLGWNSSVLHHEEMINKPGGVFLS 158
IL F + W+ +VLHHE++I KPGGV LS
Sbjct: 230 ILDFLGIAWSDAVLHHEDLIGKPGGVSLS 258
>pdb|4GBM|A Chain A, Sulfotransferase Domain From The Curacin Biosynthetic
Pathway
Length = 323
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 50 IFPFAKFIFMVRDGRATVHSIIS-RKVTITGFDLES-YRQCLKKWNEAISIMYQKCLRVG 107
+F +K+I++VR + + S + R + G E+ YR + W ++ + ++
Sbjct: 153 LFANSKYIYLVRHPYSVIESFVRMRMQKLVGLGEENPYRVAEQVWAKSNQNILNFLSQLE 212
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHEEMINKPGGV 155
P R + YE LV P++ L ++ F ++ + +L + GGV
Sbjct: 213 PERQHQIRYEDLVKKPQQVLSQLCDFLNVPFEPELLQPYQGDRMTGGV 260
>pdb|4GOX|A Chain A, Sulfotransferase Domain From The Synechococcus Pcc 7002
Olefin Synthase
Length = 313
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 45 DYLSEIFPFAKFIFMVRDGRATVHSIIS-RKVTITGFDLES-YRQCLKKWNEAISIMYQK 102
D+ +F AK+I +VR A + S R + G + ++ Y W + +
Sbjct: 140 DHSEILFDQAKYIHLVRHPYAVIESFTRLRMDKLLGAEQQNPYALAESIWRTSNRNILDL 199
Query: 103 CLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLH 144
VG R + V YE LV P K L I F + ++ ++L+
Sbjct: 200 GRTVGADRYLQVIYEDLVRDPRKVLTNICDFLGVDFDEALLN 241
>pdb|3T1I|A Chain A, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|B Chain B, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|C Chain C, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
pdb|3T1I|D Chain D, Crystal Structure Of Human Mre11: Understanding
Tumorigenic Mutations
Length = 431
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 12/77 (15%)
Query: 4 FTPNRMVINAAIAAFCLEVIARHGEPA--ERLCN----KDPLTLKSADYLSEIFPFA--- 54
F P+ + AI +FCLE I E A ERL N + PL DY PF+
Sbjct: 341 FNPDNPKVTQAIQSFCLEKIEEXLENAERERLGNSHQPEKPLVRLRVDYSGGFEPFSVLR 400
Query: 55 ---KFIFMVRDGRATVH 68
KF+ V + + +H
Sbjct: 401 FSQKFVDRVANPKDIIH 417
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 12/97 (12%)
Query: 22 VIARHGEPAE--RLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRAT---------VHSI 70
IA+HG+ AE +C+ +P L++A+ + PF+ M+ G A +H
Sbjct: 48 AIAQHGDRAELVEICDTNPEALQAAEAATGARPFSSLSDMLAQGNADALVLATPSGLHPW 107
Query: 71 ISRKVTITGFDLESYRQCLKKWNEAISIMYQKCLRVG 107
+ +V G + S + +W + M + C G
Sbjct: 108 QAIEVAQAGRHVVSEKPMATRWEDG-KRMVKACDEAG 143
>pdb|1GYH|A Chain A, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|B Chain B, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|C Chain C, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|D Chain D, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|E Chain E, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
pdb|1GYH|F Chain F, Structure Of D158a Cellvibrio Cellulosa
Alpha-L-Arabinanase Mutant
Length = 318
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 38 PLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITG 79
P L+ DY + FA + R G +T H ++ R +TG
Sbjct: 194 PFILRKGDYY---YLFASWGLCCRKGDSTYHLVVGRSKQVTG 232
>pdb|1GYD|B Chain B, Structure Of Cellvibrio Cellulosa Alpha-l-arabinanase
Length = 315
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 38 PLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITG 79
P L+ DY + FA + R G +T H ++ R +TG
Sbjct: 191 PFILRKGDYY---YLFASWGLCCRKGDSTYHLVVGRSKQVTG 229
>pdb|1GYE|B Chain B, Structure Of Cellvibrio Cellulosa Alpha-l-arabinanase
Complexed With Arabinohexaose
Length = 315
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 38 PLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITG 79
P L+ DY + FA + R G +T H ++ R +TG
Sbjct: 192 PFILRKGDYY---YLFASWGLCCRKGDSTYHLVVGRSKQVTG 230
>pdb|1Q44|A Chain A, Crystal Structure Of An Arabidopsis Thaliana Putative
Steroid Sulfotransferase
pdb|2Q3M|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of An
Arabidopsis Thaliana Putative Steroid Sulphotransferase
Length = 326
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 92 WNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLG 137
W+ + Y R P++ + V YE+L E ++RI +F + G
Sbjct: 206 WDHILEYWYAS--RENPNKVLFVTYEELKKQTEVEMKRIAEFLECG 249
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 124 EKWLRRILQFFDLGWNSSVLHHEEMINKPGGV 155
+K+LR++L L SVL +E+I KP GV
Sbjct: 17 KKFLRKLLPKQSLSVKKSVLKFDEVIGKPEGV 48
>pdb|2E3X|B Chain B, Crystal Structure Of Russell's Viper Venom
Metalloproteinase
Length = 134
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 18 FCLEVIARHG--EPAERLCNKDPLT--LKSADYLSEIFPFAKFIFMVRDGRATVHSIISR 73
FC V H E AER C + P L S + + E AK + G+ H I
Sbjct: 13 FCYRVFKEHKTWEAAERFCMEHPNNGHLVSIESMEEAEFVAKLLSNT-TGKFITHFWIGL 71
Query: 74 KVTITGFDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYE 117
+ + ++C +W++ S+ Y K + +C V+ E
Sbjct: 72 MIK------DKEQECSSEWSDGSSVSYDKLGKQEFRKCFVLEKE 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,846,401
Number of Sequences: 62578
Number of extensions: 173412
Number of successful extensions: 449
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 12
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)