Query psy7627
Match_columns 158
No_of_seqs 175 out of 1258
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:11:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7627.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7627hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3988|consensus 100.0 2.6E-36 5.7E-41 227.3 12.6 155 4-158 128-282 (378)
2 PF00685 Sulfotransfer_1: Sulf 99.6 1.4E-15 3E-20 115.5 7.6 93 50-145 101-205 (267)
3 KOG1584|consensus 99.6 8.9E-16 1.9E-20 118.1 6.0 93 52-144 123-223 (297)
4 PLN02164 sulfotransferase 99.6 2.3E-15 5.1E-20 119.5 7.1 90 52-141 164-264 (346)
5 PF13469 Sulfotransfer_3: Sulf 99.3 3.4E-11 7.4E-16 87.5 8.7 95 30-140 113-214 (215)
6 KOG3704|consensus 98.9 4.5E-09 9.7E-14 80.0 7.9 116 18-137 153-288 (360)
7 PF09037 Sulphotransf: Stf0 su 98.8 4E-08 8.8E-13 75.0 10.3 129 12-140 54-219 (245)
8 KOG3703|consensus 97.9 4.4E-05 9.6E-10 63.7 8.1 104 31-136 662-789 (873)
9 COG4424 Uncharacterized protei 97.0 0.012 2.6E-07 43.6 9.8 124 18-141 66-219 (250)
10 COG3551 Uncharacterized protei 97.0 0.0081 1.8E-07 47.0 9.2 107 25-141 102-212 (402)
11 PF03567 Sulfotransfer_2: Sulf 73.7 3.1 6.7E-05 30.7 2.5 22 53-74 78-99 (253)
12 PF07582 AP_endonuc_2_N: AP en 68.9 19 0.00042 20.9 4.6 35 101-135 7-41 (55)
13 PF06990 Gal-3-0_sulfotr: Gala 67.4 6.9 0.00015 32.3 3.4 30 44-73 138-168 (402)
14 cd01038 Endonuclease_DUF559 Do 52.9 20 0.00044 23.5 3.2 26 109-134 82-107 (108)
15 PRK09767 hypothetical protein; 50.6 27 0.00059 23.6 3.5 30 109-138 85-114 (117)
16 KOG3922|consensus 45.9 19 0.00042 28.7 2.5 21 52-72 159-179 (361)
17 PRK14102 nifW nitrogenase stab 41.7 24 0.00052 23.5 2.1 19 126-144 13-31 (105)
18 PF03206 NifW: Nitrogen fixati 41.3 18 0.00038 24.1 1.4 19 126-144 13-31 (105)
19 PF14726 RTTN_N: Rotatin, an a 39.4 35 0.00075 22.3 2.6 27 113-140 19-45 (98)
20 PF04480 DUF559: Protein of un 38.8 40 0.00088 22.1 2.9 26 109-134 82-107 (108)
21 PRK00810 nifW nitrogenase stab 38.2 19 0.0004 24.3 1.2 19 126-144 17-35 (113)
22 PF09949 DUF2183: Uncharacteri 37.0 34 0.00073 22.4 2.3 17 44-60 55-71 (100)
23 cd00808 GluRS_core catalytic c 36.3 93 0.002 23.8 4.9 33 109-141 33-70 (239)
24 COG1519 KdtA 3-deoxy-D-manno-o 35.5 70 0.0015 26.6 4.3 58 5-65 209-272 (419)
25 TIGR00350 lytR_cpsA_psr cell e 32.9 51 0.0011 23.1 2.8 36 122-157 51-90 (152)
26 PF01795 Methyltransf_5: MraW 32.3 1.2E+02 0.0026 24.2 5.0 41 29-69 20-60 (310)
27 COG5598 Trimethylamine:corrino 32.0 56 0.0012 27.8 3.2 47 109-156 398-446 (526)
28 PF10376 Mei5: Double-strand r 31.6 87 0.0019 23.7 4.0 19 121-139 198-216 (221)
29 COG3865 Uncharacterized protei 31.2 40 0.00086 23.8 1.9 22 44-65 20-41 (151)
30 PRK05710 glutamyl-Q tRNA(Asp) 31.0 1.1E+02 0.0023 24.3 4.6 32 111-142 39-75 (299)
31 PRK13808 adenylate kinase; Pro 29.5 3E+02 0.0066 22.2 12.5 48 23-72 72-125 (333)
32 cd00807 GlnRS_core catalytic c 29.3 1.5E+02 0.0034 22.6 5.0 30 111-140 35-69 (238)
33 cd00418 GlxRS_core catalytic c 29.2 1.5E+02 0.0032 22.5 4.9 34 109-142 33-71 (230)
34 PF01610 DDE_Tnp_ISL3: Transpo 27.9 30 0.00066 25.9 1.0 57 12-71 38-100 (249)
35 PRK00754 signal recognition pa 27.8 33 0.00071 22.3 1.0 44 114-157 26-72 (95)
36 cd09287 GluRS_non_core catalyt 27.6 1.2E+02 0.0025 23.3 4.1 33 109-141 33-72 (240)
37 PF09981 DUF2218: Uncharacteri 27.1 61 0.0013 20.6 2.2 21 120-140 7-27 (89)
38 PF13443 HTH_26: Cro/C1-type H 26.5 29 0.00062 19.9 0.5 16 124-139 40-55 (63)
39 PF12362 DUF3646: DNA polymera 24.8 68 0.0015 21.7 2.2 16 44-59 101-116 (117)
40 PF14791 DNA_pol_B_thumb: DNA 24.5 55 0.0012 19.5 1.5 15 126-140 44-58 (64)
41 PF14606 Lipase_GDSL_3: GDSL-l 24.0 2.9E+02 0.0063 20.1 5.6 70 44-125 84-153 (178)
42 TIGR03838 queuosine_YadB gluta 23.5 2.5E+02 0.0054 21.9 5.4 34 109-142 32-70 (272)
43 PF10551 MULE: MULE transposas 23.2 44 0.00095 20.7 1.0 32 31-65 59-90 (93)
44 PRK14895 gltX glutamyl-tRNA sy 23.2 1.8E+02 0.004 24.9 4.9 32 110-141 37-73 (513)
45 COG1316 LytR Transcriptional r 23.0 81 0.0018 25.0 2.6 36 122-157 113-152 (307)
46 smart00530 HTH_XRE Helix-turn- 22.6 64 0.0014 16.6 1.5 17 123-139 38-54 (56)
47 smart00513 SAP Putative DNA-bi 22.6 1.1E+02 0.0023 15.6 2.2 17 124-140 6-22 (35)
48 TIGR02193 heptsyl_trn_I lipopo 22.5 1E+02 0.0022 23.9 3.1 22 44-65 20-41 (319)
49 PF08262 Lem_TRP: Leucophaea m 22.0 44 0.00095 12.4 0.5 6 1-6 4-9 (10)
50 PRK14526 adenylate kinase; Pro 21.9 3.4E+02 0.0073 20.1 13.4 114 17-136 66-209 (211)
51 TIGR02384 RelB_DinJ addiction 21.7 52 0.0011 20.7 1.1 27 124-150 14-40 (83)
52 PF01922 SRP19: SRP19 protein; 20.2 47 0.001 21.5 0.7 44 113-156 19-65 (95)
No 1
>KOG3988|consensus
Probab=100.00 E-value=2.6e-36 Score=227.34 Aligned_cols=155 Identities=66% Similarity=1.192 Sum_probs=151.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhCCCCceeeecCCCCcccHHHHHhhCCCCeEEEEEechhHHHHHhhhccccccCCChh
Q psy7627 4 FTPNRMVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLE 83 (158)
Q Consensus 4 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~K~p~~~~~~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~~~~~~~~ 83 (158)
-|||+|++|+|+.+|.++++.+++++++++|.|.|..+..+.+|.++||||||+.++||.|+++.|+..++....|||.+
T Consensus 128 aGvT~EV~d~AisaFilEIiakHge~AprLCNKDPftlk~~~yl~rLfPNAKfllMvRDgRAtVhSmIsRKVtIaGfdls 207 (378)
T KOG3988|consen 128 AGVTDEVLDSAISAFILEIIAKHGEPAPRLCNKDPFTLKSLVYLSRLFPNAKFLLMVRDGRATVHSMISRKVTIAGFDLS 207 (378)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCcccccccCCchHHHHHHHHHHHCCCceEEEEEecchHHHHHHHhccceeccccch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhCCCCCcccchhhhhhcCCCCccCC
Q psy7627 84 SYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHEEMINKPGGVFLS 158 (158)
Q Consensus 84 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl~~~~~~l~~~~~~~~~~~~~~~ 158 (158)
+|.+++..|...++.+..++...+.++++.|.||.|+.+|++.+++|.+||++||++++++.+++||+||||++|
T Consensus 208 syr~c~tkWN~aie~M~~QC~~vg~~~Cl~VyYEqLVlhPe~~mr~Il~FLdipw~d~vLhHedlIgk~~gVsLs 282 (378)
T KOG3988|consen 208 SYRQCMTKWNQAIEVMYFQCMEVGKKKCLKVYYEQLVLHPEEWMRRILKFLDIPWSDAVLHHEDLIGKPGGVSLS 282 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhCHHHHHHHHHHHhCCCcHHHHHhHHHhcCCCCCCChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986
No 2
>PF00685 Sulfotransfer_1: Sulfotransferase domain; InterPro: IPR000863 This family includes a range of sulphotransferase proteins including flavonyl 3-sulphotransferase, aryl sulphotransferase, alcohol sulphotransferase, oestrogen sulphotransferase and phenol-sulphating phenol sulphotransferase. These enzymes are responsible for the transfer of sulphate groups to specific compounds.; GO: 0008146 sulfotransferase activity; PDB: 3MGC_A 3MGB_A 3MG9_A 1G3M_B 1HY3_B 2QP4_A 3F3Y_C 1EFH_A 1OV4_A 1J99_A ....
Probab=99.62 E-value=1.4e-15 Score=115.49 Aligned_cols=93 Identities=28% Similarity=0.482 Sum_probs=63.0
Q ss_pred hCCCCeEEEEEechhHHHHHhhhccccccCCC-h----hHHHH-------HHHHHHHHHHHHHHHHHhcCCCcEEEEech
Q psy7627 50 IFPFAKFIFMVRDGRATVHSIISRKVTITGFD-L----ESYRQ-------CLKKWNEAISIMYQKCLRVGPSRCMVVYYE 117 (158)
Q Consensus 50 ~fP~akiI~l~RdP~dv~~S~~~~~~~~~~~~-~----~~~~~-------~~~~w~~~~~~~~~~~~~~~~~~~l~v~YE 117 (158)
.+|++|+|+++|||+|++.|.+++........ . ..+.. ....|...+ ..++....+++++.|+||
T Consensus 101 ~~~~~KiI~ivRdP~d~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~YE 177 (267)
T PF00685_consen 101 LFPNAKIIYIVRDPRDVIVSRYKHSWRSNPFSDPGQRFEEFVDWFLQPRLLYGSWADHL---KSWLSSFDRDNVLIIRYE 177 (267)
T ss_dssp HHTTEEEEEEE--HHHHHHHHHHHHHHBTTSTTHHSHHHHHHHHHHTTHSTTSCHHHHH---HHHHHHTTTSTEEEEEHH
T ss_pred cccccccceecccccchhHHHHHHHHhcccccccchhhhhhhhhhhccccccccccccc---cchhhhhccchhhhhcch
Confidence 47999999999999999999998654322111 1 11111 112343333 334445667999999999
Q ss_pred hhhcCHHHHHHHHHHHhCCCCCcccchh
Q psy7627 118 QLVLHPEKWLRRILQFFDLGWNSSVLHH 145 (158)
Q Consensus 118 dL~~~p~~~l~~I~~fLGl~~~~~~l~~ 145 (158)
||+.||++++++||+|||++++++.++.
T Consensus 178 dl~~dp~~~l~~I~~FLgl~~~~~~~~~ 205 (267)
T PF00685_consen 178 DLVADPEKELKRICDFLGLPFSDEPLDK 205 (267)
T ss_dssp HHHHSHHHHHHHHHHHTTSS--HHHHHH
T ss_pred hhhhhhhHHHHHHHHHHhhccchhhhHH
Confidence 9999999999999999999987655543
No 3
>KOG1584|consensus
Probab=99.61 E-value=8.9e-16 Score=118.08 Aligned_cols=93 Identities=10% Similarity=0.180 Sum_probs=73.0
Q ss_pred CCCeEEEEEechhHHHHHhhhcccccc--CC--ChhHHHHHHH----HHHHHHHHHHHHHHhcCCCcEEEEechhhhcCH
Q psy7627 52 PFAKFIFMVRDGRATVHSIISRKVTIT--GF--DLESYRQCLK----KWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHP 123 (158)
Q Consensus 52 P~akiI~l~RdP~dv~~S~~~~~~~~~--~~--~~~~~~~~~~----~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p 123 (158)
++|||||+.|||.|++.|+++...... .. .++.+.+.+. .|....++++.+|+...+++++.++||||.+||
T Consensus 123 ~~cKvVYv~RNpKD~~VSy~hf~~~~~~~~~~~~~e~~fe~F~~G~~~~Gp~~dHVl~~W~~~~~~~VLFl~YEdmk~dp 202 (297)
T KOG1584|consen 123 SKCKVVYVCRNPKDVLVSYYHFNRMLKTQPGPGTFEEFFESFCNGVVPYGPWWDHVLGYWELEDPKNVLFLKYEDMKADP 202 (297)
T ss_pred CCCcEEEEecCccceeeeHHHHHhhhccCCCCCcHHHHHHHHhCCcCCcCChHHHHHHHHHhcCCCceEEEEHHHhhhCH
Confidence 489999999999999999998543211 11 1334433332 344556777889988888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcccch
Q psy7627 124 EKWLRRILQFFDLGWNSSVLH 144 (158)
Q Consensus 124 ~~~l~~I~~fLGl~~~~~~l~ 144 (158)
..+|++|++|||.+++++.++
T Consensus 203 ~~~ikrlaeFLg~~~~~Ee~~ 223 (297)
T KOG1584|consen 203 KGEIKKLAEFLGCPFTKEEED 223 (297)
T ss_pred HHHHHHHHHHhCCCCCHHHHh
Confidence 999999999999999987654
No 4
>PLN02164 sulfotransferase
Probab=99.59 E-value=2.3e-15 Score=119.50 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=66.6
Q ss_pred CCCeEEEEEechhHHHHHhhhccccc---cC--CChhHHHHHHH----HHHHHHHHHHHHHHhc--CCCcEEEEechhhh
Q psy7627 52 PFAKFIFMVRDGRATVHSIISRKVTI---TG--FDLESYRQCLK----KWNEAISIMYQKCLRV--GPSRCMVVYYEQLV 120 (158)
Q Consensus 52 P~akiI~l~RdP~dv~~S~~~~~~~~---~~--~~~~~~~~~~~----~w~~~~~~~~~~~~~~--~~~~~l~v~YEdL~ 120 (158)
|+||+|+|.|||+|++.|+|+..... .+ .++.++.+.+. .|....++++.+|+.. .++++++|+||||.
T Consensus 164 ~~~KiIyv~RnPkDv~VS~yhf~~~~~~~~~~~~s~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk 243 (346)
T PLN02164 164 SGCKMVYIWRDPKDTFISMWTFLHKERSQQGPLNSLEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMR 243 (346)
T ss_pred CCceEEEEecCchhheeeHHHHHhhccccCCCCCCHHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHH
Confidence 79999999999999999998643211 11 12222222111 2344456777777764 56799999999999
Q ss_pred cCHHHHHHHHHHHhCCCCCcc
Q psy7627 121 LHPEKWLRRILQFFDLGWNSS 141 (158)
Q Consensus 121 ~~p~~~l~~I~~fLGl~~~~~ 141 (158)
+||..++++|++|||++++++
T Consensus 244 ~D~~~~v~ria~FLG~~~s~e 264 (346)
T PLN02164 244 ADPLPYVKRLAEFMGYGFTAE 264 (346)
T ss_pred HhHHHHHHHHHHHhCCCCchh
Confidence 999999999999999999875
No 5
>PF13469 Sulfotransfer_3: Sulfotransferase family; PDB: 3AP1_B 3AP3_B 3AP2_B 3RNL_A 2Z6V_A 2ZQ5_A.
Probab=99.26 E-value=3.4e-11 Score=87.50 Aligned_cols=95 Identities=29% Similarity=0.435 Sum_probs=51.1
Q ss_pred CceeeecCCCCcccHHHHHhhCCCCeEEEEEechhHHHHHhhhcccc---ccCCChhHHHHHHHHHHHHHHHHHHHHHhc
Q psy7627 30 AERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT---ITGFDLESYRQCLKKWNEAISIMYQKCLRV 106 (158)
Q Consensus 30 ~~~~~~K~p~~~~~~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~---~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 106 (158)
...++.|+|.+. .||+ |+|+++|||++++.|+.+.... ..+............+.........
T Consensus 113 ~~~~~~k~~~~~--------~~p~-~~V~i~RdP~~~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 178 (215)
T PF13469_consen 113 RPPWLLKSPRHL--------LFPD-RFVHIVRDPRDVAASWLRMFLRHLLRRSFYEDQWARWYWEWRRALRRWRD----- 178 (215)
T ss_dssp -SEEEEESCGHH--------HSTT-EEEEEE--HHHHHHHHHHHCHHHHHCTCCCCCHHHHHHHHHHHHHHHHHH-----
T ss_pred cceeeecChHHh--------hCCC-eEEEEEeChHHHHhhHHHHhhhhhhhcccchhhhHHhHHHHHHHHHhhcc-----
Confidence 457889999766 8999 9999999999999997765421 1111111110000000000000000
Q ss_pred CCCcEEEE----echhhhcCHHHHHHHHHHHhCCCCCc
Q psy7627 107 GPSRCMVV----YYEQLVLHPEKWLRRILQFFDLGWNS 140 (158)
Q Consensus 107 ~~~~~l~v----~YEdL~~~p~~~l~~I~~fLGl~~~~ 140 (158)
.+.+++.+ +||||++||++++++||+ + +++++
T Consensus 179 ~~~~~~~~~~~~~yedl~~~p~~~l~~i~~-~-~~l~~ 214 (215)
T PF13469_consen 179 YPHRWLRVRYEWRYEDLVADPEATLRRICA-L-LELTR 214 (215)
T ss_dssp HHHHHHHHHHHHEHHHHHHSHHHHHHHHHH-C-----H
T ss_pred cHHHHHHHHhhcCHHHHHHCHHHHHHHHHH-h-hCCcC
Confidence 00111112 679999999999999999 7 88763
No 6
>KOG3704|consensus
Probab=98.93 E-value=4.5e-09 Score=80.02 Aligned_cols=116 Identities=18% Similarity=0.209 Sum_probs=79.7
Q ss_pred HHHHHHHhhCCCCceeeecCCCCccc---HHHHHhhCCCCeEEEEEechhHHHHHhhhccccc----cCCC---------
Q psy7627 18 FCLEVIARHGEPAERLCNKDPLTLKS---ADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTI----TGFD--------- 81 (158)
Q Consensus 18 ~y~~~~~~~~~~~~~~~~K~p~~~~~---~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~~----~~~~--------- 81 (158)
+|+...-+.- +.....+|+|+|... ...+..+-|+.|.|.++|||...+.|-|.+.... ..++
T Consensus 153 wyr~~MP~tl-~~qItmEKTPsYFvt~e~P~Rv~~M~pd~KLivvvR~PvtRaiSDyTQt~sk~~~~P~fe~lafkn~~~ 231 (360)
T KOG3704|consen 153 WYRSQMPRTL-DGQITMEKTPSYFVTREVPKRVYSMNPDTKLIVVVRDPVTRAISDYTQTLSKKPDIPTFEVLAFKNRTA 231 (360)
T ss_pred hHHhcCCccc-CCceEEecCchhhcccccchHHHhcCCCceEEEEEcCchhhhHHHHHHHHhcCCCCCceeeeeeecCcc
Confidence 4444433322 246889999999865 5678999999999999999999999999764321 0000
Q ss_pred -hh--HHHH-HHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhCCC
Q psy7627 82 -LE--SYRQ-CLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLG 137 (158)
Q Consensus 82 -~~--~~~~-~~~~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl~ 137 (158)
.- ++.. .+.-+..++ ..|++..+-.+++.|+=|-|+.||..++.++-+||||.
T Consensus 232 g~id~~w~ai~iglY~~Hl---e~WL~yFpL~q~lfVsGerli~dPa~E~~rVqdFLgLk 288 (360)
T KOG3704|consen 232 GLIDTSWKAIRIGLYAVHL---ENWLRYFPLRQILFVSGERLISDPAGELGRVQDFLGLK 288 (360)
T ss_pred ceeecchhhhhhhHHHHHH---HHHHHhCchhheEEecCceeecCcHHHHHHHHHHhccc
Confidence 00 1100 011222222 33444444579999999999999999999999999997
No 7
>PF09037 Sulphotransf: Stf0 sulphotransferase; InterPro: IPR024628 Members of this family are essential for the biosynthesis of sulpholipid-1 in prokaryotes. They adopt a structure that belongs to the sulphotransferase superfamily, consisting of a single domain with a core four-stranded parallel beta-sheet flanked by alpha-helices []. ; PDB: 1TEX_B.
Probab=98.84 E-value=4e-08 Score=74.99 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhhC-CCCceeeecCCC-Cc----------------ccHHHHHhhCCCCeEEEEEe-chhHHHHHhhh
Q psy7627 12 NAAIAAFCLEVIARHG-EPAERLCNKDPL-TL----------------KSADYLSEIFPFAKFIFMVR-DGRATVHSIIS 72 (158)
Q Consensus 12 ~~~~~~~y~~~~~~~~-~~~~~~~~K~p~-~~----------------~~~~~i~~~fP~akiI~l~R-dP~dv~~S~~~ 72 (158)
+......|++.+.+.+ .+..+++.|.-. ++ ..+..|...||+.++||+.| |-..-+.|+.+
T Consensus 54 ~~~~~~~~~~~~~~~~~t~ngv~G~KLm~~q~~~~~~~~~~l~~~~~~d~~~~i~~~~~~~~~I~L~R~d~l~QAvS~~~ 133 (245)
T PF09037_consen 54 DKEDPDEWLDAALARGRTPNGVFGFKLMWNQLPLLIRRLAHLYPGRSSDHLRFIEDLFGDVKFIHLRRRDLLRQAVSLWR 133 (245)
T ss_dssp ----HHHHHHHHHHHTB-TTS-EEEEEEGGGHHHHHHHHTTS-TT---SSHHHHHHHHTS-EEEEEE-S-HHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCCCCCeEEEEecHhhhHHHHHHHhhhcccccccHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHH
Confidence 4445666666555443 345688888432 21 11336788899999999997 99999999997
Q ss_pred ccccc--c----CCCh--------hHH-HHHHHHHHHHHHHHHHHHHh---cCCCcEEEEechhhhcCHHHHHHHHHHHh
Q psy7627 73 RKVTI--T----GFDL--------ESY-RQCLKKWNEAISIMYQKCLR---VGPSRCMVVYYEQLVLHPEKWLRRILQFF 134 (158)
Q Consensus 73 ~~~~~--~----~~~~--------~~~-~~~~~~w~~~~~~~~~~~~~---~~~~~~l~v~YEdL~~~p~~~l~~I~~fL 134 (158)
..... . +.+. ..| ...+.++...+......|.. ...-..+.|.||||++||.+++.+|++||
T Consensus 134 A~qtg~w~~~~~~~~~~r~~~~~~~~yd~~~i~~~i~~i~~~~~~w~~~f~~~~i~pl~i~YEdL~~dp~~~~~~Vl~fL 213 (245)
T PF09037_consen 134 ARQTGVWHQHADGTRDERVSPPRKPRYDFEEIAHLIDRIEDQEAFWRNWFARHGIEPLEITYEDLLADPQKTVARVLDFL 213 (245)
T ss_dssp HHHHS-----------TT----------HHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEHHHHHHHHHHHHHHHHHHT
T ss_pred HHhCCCcccCCCCCccccccccccceeCHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEEEHHHHHhCHHHHHHHHHHHh
Confidence 53221 0 1110 111 12233444333332222222 12235588999999999999999999999
Q ss_pred CCCCCc
Q psy7627 135 DLGWNS 140 (158)
Q Consensus 135 Gl~~~~ 140 (158)
|++...
T Consensus 214 gv~~~~ 219 (245)
T PF09037_consen 214 GVDPPL 219 (245)
T ss_dssp TS-GGG
T ss_pred CCCCcc
Confidence 997654
No 8
>KOG3703|consensus
Probab=97.95 E-value=4.4e-05 Score=63.72 Aligned_cols=104 Identities=13% Similarity=0.238 Sum_probs=73.5
Q ss_pred ceeeecCCCCccc---HHHHHhhCCCCeEEEEEechhHHHHHhhhccccc---------------cCCC-hhHH---H-H
Q psy7627 31 ERLCNKDPLTLKS---ADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTI---------------TGFD-LESY---R-Q 87 (158)
Q Consensus 31 ~~~~~K~p~~~~~---~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~~---------------~~~~-~~~~---~-~ 87 (158)
....+|+..+... ...-+.+.|.||||-|.-||.|.+.|+|.+...- .+.. .+.. + .
T Consensus 662 df~FEKSAtYFdse~aPkraasLvP~AKIvtILinPadRAYSWyQHqraH~DpvAl~~~fyeVIsas~~aps~lk~lq~R 741 (873)
T KOG3703|consen 662 DFLFEKSATYFDSEVAPKRAASLVPHAKIVTILINPADRAYSWYQHQRAHEDPVALNYSFYEVISASSSAPSALKALQNR 741 (873)
T ss_pred hheeeccccccCCcccchhhhhhCCcceEEEEEeChHHhhhHHHHHHhhcCCcceecceeEEEEecCCCCcHHHHHHHHh
Confidence 4567888877654 3445678899999999999999999999865321 0111 1111 1 1
Q ss_pred HH-HHHHHHHHHHHHHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhCC
Q psy7627 88 CL-KKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDL 136 (158)
Q Consensus 88 ~~-~~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl 136 (158)
++ .-|+. .++..|....+..++++|+-++|..||..++..+-.|||+
T Consensus 742 ClvpG~Ya--~HlerWL~y~~~~QlliiDg~qLr~~Pa~vm~~~qkfLgv 789 (873)
T KOG3703|consen 742 CLVPGWYA--THLERWLTYFPAQQLLIIDGQQLRTNPATVMNELQKFLGV 789 (873)
T ss_pred ccCcchHH--HHHHHHHHhCCcccEEEEccHHhccCcHHHHHHHHHHhCC
Confidence 11 12332 2344455566778999999999999999999999999999
No 9
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.03 E-value=0.012 Score=43.63 Aligned_cols=124 Identities=14% Similarity=0.066 Sum_probs=78.1
Q ss_pred HHHHH-HHhhCCCCceeeecCCCCcc---------------cHHHHHhhCCCCeEEEEEe-chhHHHHHhhhccccc---
Q psy7627 18 FCLEV-IARHGEPAERLCNKDPLTLK---------------SADYLSEIFPFAKFIFMVR-DGRATVHSIISRKVTI--- 77 (158)
Q Consensus 18 ~y~~~-~~~~~~~~~~~~~K~p~~~~---------------~~~~i~~~fP~akiI~l~R-dP~dv~~S~~~~~~~~--- 77 (158)
.|++. +.+-..+..+|+.|.-.|.. ..-.+...|-+.-+||+.| |-..-+.|+.+...+.
T Consensus 66 a~f~aai~kgstpngvfGlkLmrn~d~l~q~lav~lp~~ssD~~r~e~afg~~lfvhl~R~dkv~QAvSl~rA~QTglwh 145 (250)
T COG4424 66 AWFEAAITKGSTPNGVFGLKLMRNQDALLQQLAVQLPDRSSDGLRIEDAFGEPLFVHLHRPDKVSQAVSLWRAVQTGLWH 145 (250)
T ss_pred HHHHHHHHcCCCCCccchhhhccchHHHHHHHHHhCccccchHHHHHHHhCCeeEEEeecchHHHHHHHHHHHHHhccee
Confidence 34443 33333356688888655521 1234566777888999987 8888999999854321
Q ss_pred ---cCCCh---hHH-HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEechhhhcCHHHHHHHHHHHhCCCCCcc
Q psy7627 78 ---TGFDL---ESY-RQCLKKWNEAISIMYQKCLRV---GPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSS 141 (158)
Q Consensus 78 ---~~~~~---~~~-~~~~~~w~~~~~~~~~~~~~~---~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl~~~~~ 141 (158)
.|... ..| .+.+.+|...++.....|+.. ..-..+.+-||.|-+||...+..+|+.||.+...+
T Consensus 146 ahpdG~ap~s~p~Ydfe~Ia~~~~~lrdydaaWn~wfa~qGiep~riaYe~Lsadp~aava~~~ealgv~~p~a 219 (250)
T COG4424 146 AHPDGPAPDSQPVYDFEAIAHIIRNLRDYDAAWNAWFAEQGIEPIRIAYEVLSADPTAAVASVLEALGVDPPLA 219 (250)
T ss_pred ccCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHhHHHHccCcHHHHHHHHHHhCCCCCCC
Confidence 11100 111 244566666655444444332 22345668899999999999999999999986543
No 10
>COG3551 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.01 E-value=0.0081 Score=47.03 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=75.1
Q ss_pred hhCCCCceeeecCCCCcccHHHHHhhCC---C-CeEEEEEechhHHHHHhhhccccccCCChhHHHHHHHHHHHHHHHHH
Q psy7627 25 RHGEPAERLCNKDPLTLKSADYLSEIFP---F-AKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIMY 100 (158)
Q Consensus 25 ~~~~~~~~~~~K~p~~~~~~~~i~~~fP---~-akiI~l~RdP~dv~~S~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 100 (158)
.+...+..|+.|.|..+..+++.+..+- + .-+|.-.|+|..|+.|..++... ...+.+--|..+..+..
T Consensus 102 ~~~~~kpl~gIKDPRm~r~~p~w~~~~d~~~~~~~~iv~~r~plsVA~sl~rrD~~-------~leksliLw~~h~~~~~ 174 (402)
T COG3551 102 QHAAGKPLWGIKDPRMLRTFPLWKGPMDRVADITYIIVHRRIPLSVASSLRRRDMT-------ELEKSLILWPYHGNKQR 174 (402)
T ss_pred HHhcCCceeeecCcchhcccHHhhhHHHHhccceeEEeecCCcHHHHHHHHhhhhh-------hchHHHHHHHHhhHHHH
Confidence 3443456899999999988888776663 2 23455569999999999875432 33344556776654443
Q ss_pred HHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhCCCCCcc
Q psy7627 101 QKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSS 141 (158)
Q Consensus 101 ~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl~~~~~ 141 (158)
-+.+.. +. ..+.||-+..||.+...++.+.+|+++.++
T Consensus 175 ~~~~h~--~~-~~~~yd~~l~d~rqh~dr~~~~~~~~v~~a 212 (402)
T COG3551 175 IREQHV--EE-GADIYDVHLSDLRQHPDRLVAAVNQRVGRA 212 (402)
T ss_pred HHHHhc--cc-hhhhHHHHHhhHHhChHHHHHHhcCcCCcc
Confidence 333332 22 357899999999999999999999987654
No 11
>PF03567 Sulfotransfer_2: Sulfotransferase family; InterPro: IPR005331 This entry consists of a number of carbohydrate sulphotransferases that transfer sulphate to carbohydrate groups in glycoproteins and glycolipids. These include: Carbohydrate sulphotransferases 8 and 9, which transfer sulphate to position 4 of non-reducing N-acetylgalactosamine (GalNAc) residues in both N-glycans and O-glycans []. They function in the biosynthesis of glycoprotein hormones lutropin and thyrotropin, by mediating sulphation of their carbohydrate structures. Carbohydrate sulphotransferase 10, which transfers sulphate to position 3 of the terminal glucuronic acid in both protein- and lipid-linked oligosaccharides []. It directs the biosynthesis of the HNK-1 carbohydrate structure, a sulphated glucuronyl-lactosaminyl residue carried by many neural recognition molecules, which is involved in cell interactions during ontogenetic development and in synaptic plasticity in the adult. Carbohydrate sulphotransferases 11 - 13, which catalyze the transfer of sulphate to position 4 of the GalNAc residue of chondroitin []. Chondroitin sulphate constitutes the predominant proteoglycan present in cartilage and is distributed on the surfaces of many cells and extracellular matrices. Some, thought not all, of these enzymes also transfer sulphate to dermatan. Carbohydrate sulphotransferase D4ST1, which transfers sulphate to position 4 of the GalNAc residue of dermatan sulphate []. Heparan sulphate 2-O-sulphotransferase (HS2ST). Heparan sulphate (HS) is a co-receptor for a number of growth factors, morphogens, and adhesion proteins. HS biosynthetic modifications may determine the strength and outcome of HS-ligand interactions. Mice that lack HS2ST undergo developmental failure only after midgestation,the most dramatic effect being the complete failure of kidney development []. Heparan-sulphate 6-O-sulphotransferase (HS6ST), which catalyses the transfer of sulphate from adenosine 3'-phosphate, 5'-phosphosulphate to the 6th position of the N -sulphoglucosamine residue in heparan sulphate []. Chondroitin 6-sulphotransferase catalyses the transfer of sulphate to position 6 of the N-acetylgalactosamine residue of chondroitin []. ; GO: 0008146 sulfotransferase activity, 0016021 integral to membrane; PDB: 3F5F_A.
Probab=73.66 E-value=3.1 Score=30.74 Aligned_cols=22 Identities=23% Similarity=-0.013 Sum_probs=16.0
Q ss_pred CCeEEEEEechhHHHHHhhhcc
Q psy7627 53 FAKFIFMVRDGRATVHSIISRK 74 (158)
Q Consensus 53 ~akiI~l~RdP~dv~~S~~~~~ 74 (158)
+...+-++|||.+.+.|.|...
T Consensus 78 ~~~~~t~vRdP~~R~vS~y~~~ 99 (253)
T PF03567_consen 78 SYFKFTFVRDPVDRLVSAYYDK 99 (253)
T ss_dssp --EEEEEE--HHHHHHHHHHHH
T ss_pred ceEEEEEeCCHHHHHHHHHHHH
Confidence 5788999999999999999754
No 12
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=68.94 E-value=19 Score=20.90 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhC
Q psy7627 101 QKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFD 135 (158)
Q Consensus 101 ~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLG 135 (158)
+.++..+-+-.+.|-+||..-+|..-+++-++||-
T Consensus 7 ~~L~~~GYdG~~siE~ED~~~~~~~G~~~a~~~lr 41 (55)
T PF07582_consen 7 SALREIGYDGWLSIEHEDALMDPEEGAREAAAFLR 41 (55)
T ss_dssp HHHHHTT--SEEEE---STTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCceEEEEeecCCCCHHHHHHHHHHHHH
Confidence 33455666789999999999999999999999974
No 13
>PF06990 Gal-3-0_sulfotr: Galactose-3-O-sulfotransferase ; InterPro: IPR009729 This family consists of several mammalian galactose-3-O-sulphotransferase proteins. Gal-3-O-sulphotransferase is thought to play a critical role in 3'-sulphation of N-acetyllactosamine in both O- and N-glycans [].; GO: 0001733 galactosylceramide sulfotransferase activity, 0009058 biosynthetic process, 0005794 Golgi apparatus, 0016021 integral to membrane
Probab=67.45 E-value=6.9 Score=32.25 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=26.1
Q ss_pred HHHHHhhCC-CCeEEEEEechhHHHHHhhhc
Q psy7627 44 ADYLSEIFP-FAKFIFMVRDGRATVHSIISR 73 (158)
Q Consensus 44 ~~~i~~~fP-~akiI~l~RdP~dv~~S~~~~ 73 (158)
.+.+.+.+| |+++|-|+|||...+.|.+..
T Consensus 138 ~~~~~~lmP~dt~yiTILRdP~~~feS~f~Y 168 (402)
T PF06990_consen 138 RPEVRKLMPPDTKYITILRDPVSHFESSFNY 168 (402)
T ss_pred HHHHHHhCCCCCeEEEEEcCHHHHHHhHHHH
Confidence 466888887 699999999999999999874
No 14
>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases.
Probab=52.91 E-value=20 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.5
Q ss_pred CcEEEEechhhhcCHHHHHHHHHHHh
Q psy7627 109 SRCMVVYYEQLVLHPEKWLRRILQFF 134 (158)
Q Consensus 109 ~~~l~v~YEdL~~~p~~~l~~I~~fL 134 (158)
=.++.+.++|+..+|..++.+|.+.+
T Consensus 82 w~vlR~~~~dv~~~~~~~~~~I~~~l 107 (108)
T cd01038 82 FRVLRFWNNEVLRNIEAVLEAILAAL 107 (108)
T ss_pred CEEEEEEHHHHhhCHHHHHHHHHHHh
Confidence 47889999999999999999998875
No 15
>PRK09767 hypothetical protein; Provisional
Probab=50.60 E-value=27 Score=23.59 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=26.6
Q ss_pred CcEEEEechhhhcCHHHHHHHHHHHhCCCC
Q psy7627 109 SRCMVVYYEQLVLHPEKWLRRILQFFDLGW 138 (158)
Q Consensus 109 ~~~l~v~YEdL~~~p~~~l~~I~~fLGl~~ 138 (158)
=.++.+..+|+..||+.+++.|.+.++-..
T Consensus 85 ~~VlRf~n~dV~~~~~~Vl~~I~~~l~~~~ 114 (117)
T PRK09767 85 WTVLRFWNNEIDCNEEAVLEIILQELNRRS 114 (117)
T ss_pred CEEEEEEHHHHHhCHHHHHHHHHHHHhccC
Confidence 478889999999999999999999988653
No 16
>KOG3922|consensus
Probab=45.91 E-value=19 Score=28.66 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=18.3
Q ss_pred CCCeEEEEEechhHHHHHhhh
Q psy7627 52 PFAKFIFMVRDGRATVHSIIS 72 (158)
Q Consensus 52 P~akiI~l~RdP~dv~~S~~~ 72 (158)
++.=+|-++|||.+.+.|+|-
T Consensus 159 ~~PIYINvIRdPveRllS~yy 179 (361)
T KOG3922|consen 159 ARPIYINVIRDPVERLLSYYY 179 (361)
T ss_pred CCceEEeeeccHHHHHHhHhh
Confidence 566678899999999999985
No 17
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=41.73 E-value=24 Score=23.47 Aligned_cols=19 Identities=26% Similarity=0.552 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCCCcccch
Q psy7627 126 WLRRILQFFDLGWNSSVLH 144 (158)
Q Consensus 126 ~l~~I~~fLGl~~~~~~l~ 144 (158)
..+..++|+|+|++|..++
T Consensus 13 sAEdFf~ff~v~YDp~vvn 31 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVN 31 (105)
T ss_pred cHHHHHHHhCCCCCcchhh
Confidence 3577899999999998876
No 18
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=41.34 E-value=18 Score=24.08 Aligned_cols=19 Identities=16% Similarity=0.474 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCCcccch
Q psy7627 126 WLRRILQFFDLGWNSSVLH 144 (158)
Q Consensus 126 ~l~~I~~fLGl~~~~~~l~ 144 (158)
..+..++|+|+|+|+..++
T Consensus 13 sAEdFf~fF~V~YDp~vv~ 31 (105)
T PF03206_consen 13 SAEDFFDFFGVPYDPKVVN 31 (105)
T ss_pred CHHHHHHHhCCCcchhHHH
Confidence 4678899999999998876
No 19
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.41 E-value=35 Score=22.33 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=24.1
Q ss_pred EEechhhhcCHHHHHHHHHHHhCCCCCc
Q psy7627 113 VVYYEQLVLHPEKWLRRILQFFDLGWNS 140 (158)
Q Consensus 113 ~v~YEdL~~~p~~~l~~I~~fLGl~~~~ 140 (158)
.+.++|++ +|...++++++|+|.+-.+
T Consensus 19 Li~~~dl~-~~~~Ll~~LleWFnf~~~~ 45 (98)
T PF14726_consen 19 LISEEDLV-KERLLLKQLLEWFNFPPVP 45 (98)
T ss_pred cccHHHHc-cHHHHHHHHHHHhCCCCCc
Confidence 58899999 9999999999999998654
No 20
>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease. ; PDB: 3R3P_B 3HRL_A.
Probab=38.80 E-value=40 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=22.5
Q ss_pred CcEEEEechhhhcCHHHHHHHHHHHh
Q psy7627 109 SRCMVVYYEQLVLHPEKWLRRILQFF 134 (158)
Q Consensus 109 ~~~l~v~YEdL~~~p~~~l~~I~~fL 134 (158)
=.++.+..+++..||+.++.+|.+.+
T Consensus 82 w~VlR~~~~~v~~~~~~vv~~I~~~i 107 (108)
T PF04480_consen 82 WTVLRFTAEDVREDPEAVVEQIRAAI 107 (108)
T ss_dssp -EEEEEEHHHHHHGHHHHHHHHHHHH
T ss_pred CEEEEeeHHHHHhCHHHHHHHHHHHh
Confidence 36888999999999999999998765
No 21
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=38.19 E-value=19 Score=24.31 Aligned_cols=19 Identities=11% Similarity=0.343 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCCCcccch
Q psy7627 126 WLRRILQFFDLGWNSSVLH 144 (158)
Q Consensus 126 ~l~~I~~fLGl~~~~~~l~ 144 (158)
..+..++|+|+++++..++
T Consensus 17 sAEdff~ff~V~YDp~vvn 35 (113)
T PRK00810 17 SAEEFFQLLGVPYDPKVVN 35 (113)
T ss_pred cHHHHHHHhCCCCCHHHHH
Confidence 4678899999999998776
No 22
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=36.96 E-value=34 Score=22.41 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.9
Q ss_pred HHHHHhhCCCCeEEEEE
Q psy7627 44 ADYLSEIFPFAKFIFMV 60 (158)
Q Consensus 44 ~~~i~~~fP~akiI~l~ 60 (158)
+..|.+.||+.|+|.+-
T Consensus 55 i~~i~~~fP~~kfiLIG 71 (100)
T PF09949_consen 55 IERILRDFPERKFILIG 71 (100)
T ss_pred HHHHHHHCCCCcEEEEe
Confidence 67889999999999883
No 23
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=36.30 E-value=93 Score=23.77 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=23.6
Q ss_pred CcEEEEechhhh-----cCHHHHHHHHHHHhCCCCCcc
Q psy7627 109 SRCMVVYYEQLV-----LHPEKWLRRILQFFDLGWNSS 141 (158)
Q Consensus 109 ~~~l~v~YEdL~-----~~p~~~l~~I~~fLGl~~~~~ 141 (158)
+-.++++.||.- .+-...+.+.+++||+.|++.
T Consensus 33 ~G~~ilRieDtd~~r~~~~~~~~i~~dL~wlGl~~d~~ 70 (239)
T cd00808 33 GGKFILRIEDTDQERSVPEAEEAILEALKWLGLDWDEG 70 (239)
T ss_pred CCeEEEEECcCCCCCCchHHHHHHHHHHHHcCCCCCcC
Confidence 346778999852 122356778899999999974
No 24
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=70 Score=26.63 Aligned_cols=58 Identities=16% Similarity=0.029 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCCceeeecCCCCc------ccHHHHHhhCCCCeEEEEEechhH
Q psy7627 5 TPNRMVINAAIAAFCLEVIARHGEPAERLCNKDPLTL------KSADYLSEIFPFAKFIFMVRDGRA 65 (158)
Q Consensus 5 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~K~p~~~------~~~~~i~~~fP~akiI~l~RdP~d 65 (158)
+++...-+.+....++..+..+ .+.|+--+..-- .....+++.+||++.|.+=|||.-
T Consensus 209 d~~~~~~~~~~~~~~r~~l~~~---r~v~iaaSTH~GEeei~l~~~~~l~~~~~~~llIlVPRHpER 272 (419)
T COG1519 209 DIEPPPQLAAELAALRRQLGGH---RPVWVAASTHEGEEEIILDAHQALKKQFPNLLLILVPRHPER 272 (419)
T ss_pred cCCCChhhHHHHHHHHHhcCCC---CceEEEecCCCchHHHHHHHHHHHHhhCCCceEEEecCChhh
Confidence 3344444455555555554432 345665443211 124566788999999999999974
No 25
>TIGR00350 lytR_cpsA_psr cell envelope-related function transcriptional attenuator common domain. This model describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is proteins psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. Besides the region of strong similarily represented by this model, these proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.
Probab=32.91 E-value=51 Score=23.12 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHhCCCCCc----ccchhhhhhcCCCCccC
Q psy7627 122 HPEKWLRRILQFFDLGWNS----SVLHHEEMINKPGGVFL 157 (158)
Q Consensus 122 ~p~~~l~~I~~fLGl~~~~----~~l~~~~~~~~~~~~~~ 157 (158)
.++.+++.|-+.+|++.+- .+-.+.+++++-|||.|
T Consensus 51 G~~~~~~~V~~l~gi~Id~yv~v~~~~f~~lvD~lGGV~V 90 (152)
T TIGR00350 51 GPQCLVKTVENLLGVPIDRYVEVDFDGFEDVVDALGGVDV 90 (152)
T ss_pred CHHHHHHHHHHHHCCCCcEEEEEcHHHHHHHHhcCCCEEE
Confidence 4677888888888888764 44556788888888765
No 26
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=32.32 E-value=1.2e+02 Score=24.23 Aligned_cols=41 Identities=17% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCceeeecCCCCcccHHHHHhhCCCCeEEEEEechhHHHHH
Q psy7627 29 PAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHS 69 (158)
Q Consensus 29 ~~~~~~~K~p~~~~~~~~i~~~fP~akiI~l~RdP~dv~~S 69 (158)
+...++|-|-..-.+-..|.+.+|++++|-+-|||...-..
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a 60 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERA 60 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHH
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHH
Confidence 34589999988888888899999999999999999998444
No 27
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=32.04 E-value=56 Score=27.81 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=36.8
Q ss_pred CcEEEEechhhhcCHHHHHHHHHHHh-CCCCCcccchhhhhhc-CCCCcc
Q psy7627 109 SRCMVVYYEQLVLHPEKWLRRILQFF-DLGWNSSVLHHEEMIN-KPGGVF 156 (158)
Q Consensus 109 ~~~l~v~YEdL~~~p~~~l~~I~~fL-Gl~~~~~~l~~~~~~~-~~~~~~ 156 (158)
+.-+..+||.|+-|-+. ++.+++|+ |++++++.+.+..+-. .++|=|
T Consensus 398 eggL~~s~Ekli~D~d~-l~~~~~~l~gi~vse~~la~dai~eV~~ggHf 446 (526)
T COG5598 398 EGGLTFSYEKLIIDNDI-LGMVQKFLRGIDVSEEALAFDAIREVGPGGHF 446 (526)
T ss_pred hccchhhHHHHhhhHHH-HHHHHHHhcCCCCCchhhhhHHHHhhCCCCcc
Confidence 34567899999999876 88888886 8999999998887765 444443
No 28
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=31.57 E-value=87 Score=23.67 Aligned_cols=19 Identities=0% Similarity=0.127 Sum_probs=16.3
Q ss_pred cCHHHHHHHHHHHhCCCCC
Q psy7627 121 LHPEKWLRRILQFFDLGWN 139 (158)
Q Consensus 121 ~~p~~~l~~I~~fLGl~~~ 139 (158)
.+++-++..+++.|||+++
T Consensus 198 e~~~~TM~eL~~~l~ID~~ 216 (221)
T PF10376_consen 198 EGEKFTMGELIKRLGIDYD 216 (221)
T ss_pred cccCccHHHHHHHhCCCcc
Confidence 3678899999999999865
No 29
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.24 E-value=40 Score=23.82 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=18.9
Q ss_pred HHHHHhhCCCCeEEEEEechhH
Q psy7627 44 ADYLSEIFPFAKFIFMVRDGRA 65 (158)
Q Consensus 44 ~~~i~~~fP~akiI~l~RdP~d 65 (158)
+.+-.+.|||++++.+.|=|.+
T Consensus 20 ~~fY~s~FpdS~i~~i~r~p~~ 41 (151)
T COG3865 20 MNFYLSTFPDSKIIGITRYPEG 41 (151)
T ss_pred HHHHHHhCCcceeeeeeecCCC
Confidence 5667889999999999998765
No 30
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=31.04 E-value=1.1e+02 Score=24.30 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=22.7
Q ss_pred EEEEechhhhc---CH--HHHHHHHHHHhCCCCCccc
Q psy7627 111 CMVVYYEQLVL---HP--EKWLRRILQFFDLGWNSSV 142 (158)
Q Consensus 111 ~l~v~YEdL~~---~p--~~~l~~I~~fLGl~~~~~~ 142 (158)
-++++.||.=. .| ...+.+-+++||++||+..
T Consensus 39 ~~iLRiEDtD~~R~~~~~~~~I~~dL~wlGl~wDe~~ 75 (299)
T PRK05710 39 RWLLRIEDIDPPREVPGAADAILADLEWLGLHWDGPV 75 (299)
T ss_pred EEEEEECcCCCCccchHHHHHHHHHHHHCCCCCCCCc
Confidence 44789998721 12 2567888999999999643
No 31
>PRK13808 adenylate kinase; Provisional
Probab=29.55 E-value=3e+02 Score=22.18 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHhhCCCCceeeecCCCCcccHHHHHhh------CCCCeEEEEEechhHHHHHhhh
Q psy7627 23 IARHGEPAERLCNKDPLTLKSADYLSEI------FPFAKFIFMVRDGRATVHSIIS 72 (158)
Q Consensus 23 ~~~~~~~~~~~~~K~p~~~~~~~~i~~~------fP~akiI~l~RdP~dv~~S~~~ 72 (158)
+...+....+++|-.|.+...+..+.+. .||. ++...=|.+++.....
T Consensus 72 l~~~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDl--VI~LDVp~evll~Rl~ 125 (333)
T PRK13808 72 IEQPDAANGFILDGFPRTVPQAEALDALLKDKQLKLDA--VVELRVNEGALLARVE 125 (333)
T ss_pred HhcccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCe--EEEEECCHHHHHHHHH
Confidence 3333333458889999998876655443 3554 4455657777766654
No 32
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=29.27 E-value=1.5e+02 Score=22.62 Aligned_cols=30 Identities=0% Similarity=-0.034 Sum_probs=22.5
Q ss_pred EEEEechhhhc-----CHHHHHHHHHHHhCCCCCc
Q psy7627 111 CMVVYYEQLVL-----HPEKWLRRILQFFDLGWNS 140 (158)
Q Consensus 111 ~l~v~YEdL~~-----~p~~~l~~I~~fLGl~~~~ 140 (158)
-+++++||.=. .-...+.+-+++||+.||+
T Consensus 35 ~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wD~ 69 (238)
T cd00807 35 RCNLRFDDTNPEKEEEEYVDSIKEDVKWLGIKPYK 69 (238)
T ss_pred EEEEEecCCCCcccchHHHHHHHHHHHHcCCCCCC
Confidence 44589998742 3345588889999999994
No 33
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=29.23 E-value=1.5e+02 Score=22.54 Aligned_cols=34 Identities=12% Similarity=0.194 Sum_probs=24.5
Q ss_pred CcEEEEechhhhc-----CHHHHHHHHHHHhCCCCCccc
Q psy7627 109 SRCMVVYYEQLVL-----HPEKWLRRILQFFDLGWNSSV 142 (158)
Q Consensus 109 ~~~l~v~YEdL~~-----~p~~~l~~I~~fLGl~~~~~~ 142 (158)
+--++++.||.=. .-...+.+-+++||+.||+..
T Consensus 33 ~G~~iLRieDtD~~R~~~~~~~~I~~dL~wlGl~wd~~~ 71 (230)
T cd00418 33 GGKFILRIEDTDPERSRPEYVESILEDLKWLGLDWDEGP 71 (230)
T ss_pred CCeEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCe
Confidence 3445689998743 234667788899999999743
No 34
>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element. Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=27.92 E-value=30 Score=25.88 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhCCC--CceeeecCCCCcccHHHHHhhCCCCeEE----EEEechhHHHHHhh
Q psy7627 12 NAAIAAFCLEVIARHGEP--AERLCNKDPLTLKSADYLSEIFPFAKFI----FMVRDGRATVHSII 71 (158)
Q Consensus 12 ~~~~~~~y~~~~~~~~~~--~~~~~~K~p~~~~~~~~i~~~fP~akiI----~l~RdP~dv~~S~~ 71 (158)
.+.+..++.++....... ..+..|-++.+. ..+.+.||+|++| |++++-.+.+....
T Consensus 38 ~~~l~~~~~~~~~~~~~~~v~~V~~Dm~~~y~---~~~~~~~P~A~iv~DrFHvvk~~~~al~~vR 100 (249)
T PF01610_consen 38 KETLKDFFRSLYPEEERKNVKVVSMDMSPPYR---SAIREYFPNAQIVADRFHVVKLANRALDKVR 100 (249)
T ss_pred HHHHHHHHHHhCccccccceEEEEcCCCcccc---ccccccccccccccccchhhhhhhhcchhhh
Confidence 345566665552222222 233445666554 4478999999986 45555555444443
No 35
>PRK00754 signal recognition particle protein Srp19; Provisional
Probab=27.83 E-value=33 Score=22.34 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=29.4
Q ss_pred EechhhhcCHH-HHHHHHHHHhCCCCCc--ccchhhhhhcCCCCccC
Q psy7627 114 VYYEQLVLHPE-KWLRRILQFFDLGWNS--SVLHHEEMINKPGGVFL 157 (158)
Q Consensus 114 v~YEdL~~~p~-~~l~~I~~fLGl~~~~--~~l~~~~~~~~~~~~~~ 157 (158)
|.=+--+.+|. .+|.++|+-||++..- +-..+.++...+|-|.|
T Consensus 26 v~k~~aV~~P~~~EI~~a~~~lgl~~~~e~~K~yPr~~~e~~GRv~V 72 (95)
T PRK00754 26 ISRKLAVKEPRLEEIIEAAEKLGLNPEVEPDKAYPRSWWEVSGRVLV 72 (95)
T ss_pred cCHHHhccCCCHHHHHHHHHHcCCCeEEeeCCCCCchHhcCCCEEEE
Confidence 33444556765 7899999999999643 34566777666665543
No 36
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=27.60 E-value=1.2e+02 Score=23.29 Aligned_cols=33 Identities=6% Similarity=0.276 Sum_probs=22.9
Q ss_pred CcEEEEechhhhc-------CHHHHHHHHHHHhCCCCCcc
Q psy7627 109 SRCMVVYYEQLVL-------HPEKWLRRILQFFDLGWNSS 141 (158)
Q Consensus 109 ~~~l~v~YEdL~~-------~p~~~l~~I~~fLGl~~~~~ 141 (158)
+--+++++||.=. .-...+.+-+++||++|++.
T Consensus 33 ~G~~ilRieDtD~~r~~~~~~~~~~i~~dL~wLGl~~d~~ 72 (240)
T cd09287 33 GGKFILRFDDTDPRTKRPDPEAYDMIPEDLEWLGVKWDEV 72 (240)
T ss_pred CCEEEEeeCcCCCCcccchHHHHHHHHHHHHHcCCCCCCc
Confidence 3455789998732 12236788899999999853
No 37
>PF09981 DUF2218: Uncharacterized protein conserved in bacteria (DUF2218); InterPro: IPR014543 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2JPI_A.
Probab=27.13 E-value=61 Score=20.65 Aligned_cols=21 Identities=10% Similarity=0.387 Sum_probs=17.4
Q ss_pred hcCHHHHHHHHHHHhCCCCCc
Q psy7627 120 VLHPEKWLRRILQFFDLGWNS 140 (158)
Q Consensus 120 ~~~p~~~l~~I~~fLGl~~~~ 140 (158)
..+|...+++||++++-.++-
T Consensus 7 T~~~~ryl~qLc~Hf~hk~~v 27 (89)
T PF09981_consen 7 TPNASRYLKQLCKHFAHKFEV 27 (89)
T ss_dssp -SSHHHHHHHHHHHTTTSSEE
T ss_pred CCCHHHHHHHHHHHhcCCCce
Confidence 368999999999999987653
No 38
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=26.52 E-value=29 Score=19.94 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCCCCC
Q psy7627 124 EKWLRRILQFFDLGWN 139 (158)
Q Consensus 124 ~~~l~~I~~fLGl~~~ 139 (158)
..++.+||.+||++.+
T Consensus 40 ~~~l~~ia~~l~~~~~ 55 (63)
T PF13443_consen 40 LDTLEKIAKALNCSPE 55 (63)
T ss_dssp HHHHHHHHHHHT--HH
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4779999999999754
No 39
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=24.80 E-value=68 Score=21.68 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=12.5
Q ss_pred HHHHHhhCCCCeEEEE
Q psy7627 44 ADYLSEIFPFAKFIFM 59 (158)
Q Consensus 44 ~~~i~~~fP~akiI~l 59 (158)
+.-+...||+|+|+-+
T Consensus 101 V~avL~~FPgA~I~~V 116 (117)
T PF12362_consen 101 VKAVLAAFPGAEIVDV 116 (117)
T ss_pred HHHHHHHCCCCEEEee
Confidence 4557889999999854
No 40
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=24.52 E-value=55 Score=19.51 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=9.6
Q ss_pred HHHHHHHHhCCCCCc
Q psy7627 126 WLRRILQFFDLGWNS 140 (158)
Q Consensus 126 ~l~~I~~fLGl~~~~ 140 (158)
+=+.|+++||+++-+
T Consensus 44 ~E~dif~~Lgl~yip 58 (64)
T PF14791_consen 44 SEEDIFDALGLPYIP 58 (64)
T ss_dssp SHHHHHHHTTS----
T ss_pred CHHHHHHHcCCCCCC
Confidence 457899999999854
No 41
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=23.99 E-value=2.9e+02 Score=20.11 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=31.8
Q ss_pred HHHHHhhCCCCeEEEEEechhHHHHHhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhcCH
Q psy7627 44 ADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHP 123 (158)
Q Consensus 44 ~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p 123 (158)
+..|.+..|++.||++..-+...- ..... .+. . .......++...+..++.+..+++.|.=++|+.+.
T Consensus 84 v~~iR~~hP~tPIllv~~~~~~~~--~~~~~---~~~---~----~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~llg~d 151 (178)
T PF14606_consen 84 VKTIREAHPDTPILLVSPIPYPAG--YFDNS---RGE---T----VEEFREALREAVEQLRKEGDKNLYYLDGEELLGDD 151 (178)
T ss_dssp HHHHHTT-SSS-EEEEE----TTT--TS--T---TS---------HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHCS---
T ss_pred HHHHHHhCCCCCEEEEecCCcccc--ccCch---HHH---H----HHHHHHHHHHHHHHHHHcCCCcEEEeCchhhcCcc
Confidence 667888999999999865443211 01000 011 1 12222333344444455567899999999988554
Q ss_pred HH
Q psy7627 124 EK 125 (158)
Q Consensus 124 ~~ 125 (158)
..
T Consensus 152 ~e 153 (178)
T PF14606_consen 152 HE 153 (178)
T ss_dssp --
T ss_pred cc
Confidence 43
No 42
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=23.54 E-value=2.5e+02 Score=21.89 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=24.6
Q ss_pred CcEEEEechhhh---cCH--HHHHHHHHHHhCCCCCccc
Q psy7627 109 SRCMVVYYEQLV---LHP--EKWLRRILQFFDLGWNSSV 142 (158)
Q Consensus 109 ~~~l~v~YEdL~---~~p--~~~l~~I~~fLGl~~~~~~ 142 (158)
+--++++.||.= ..| ...+.+-+++||+.|++..
T Consensus 32 gG~~iLRiEDtD~~R~~~~~~~~I~~dL~wLGl~wDe~~ 70 (272)
T TIGR03838 32 GGRWLVRIEDLDPPREVPGAADDILRTLEAYGLHWDGEV 70 (272)
T ss_pred CCEEEEEeCcCCCCCCChHHHHHHHHHHHHcCCCCCCCe
Confidence 345678998875 223 3678888999999999753
No 43
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=23.23 E-value=44 Score=20.70 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=22.2
Q ss_pred ceeeecCCCCcccHHHHHhhCCCCeEEEEEechhH
Q psy7627 31 ERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRA 65 (158)
Q Consensus 31 ~~~~~K~p~~~~~~~~i~~~fP~akiI~l~RdP~d 65 (158)
..+.|.... ....+.+.||+++...|.+|-..
T Consensus 59 ~ii~D~~~~---~~~Ai~~vfP~~~~~~C~~H~~~ 90 (93)
T PF10551_consen 59 VIISDFDKA---LINAIKEVFPDARHQLCLFHILR 90 (93)
T ss_pred eeeccccHH---HHHHHHHHCCCceEehhHHHHHH
Confidence 344455443 35678899999999988877544
No 44
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=23.17 E-value=1.8e+02 Score=24.94 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=21.6
Q ss_pred cEEEEechhh--hcCHHHHHHHH---HHHhCCCCCcc
Q psy7627 110 RCMVVYYEQL--VLHPEKWLRRI---LQFFDLGWNSS 141 (158)
Q Consensus 110 ~~l~v~YEdL--~~~p~~~l~~I---~~fLGl~~~~~ 141 (158)
--++++.||. -+..++..+.| ++|||++||+.
T Consensus 37 G~fiLRIEDTD~~R~~~~~~~~i~~~L~WLGl~wDe~ 73 (513)
T PRK14895 37 GKFLLRIEDTDKERSTKEAVEAIFSGLKWLGLDWNGE 73 (513)
T ss_pred CEEEEEECCCCccccChHHHHHHHHHHHHcCCCCCCC
Confidence 3456888887 33444444444 89999999964
No 45
>COG1316 LytR Transcriptional regulator [Transcription]
Probab=22.98 E-value=81 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHhCCCCCc----ccchhhhhhcCCCCccC
Q psy7627 122 HPEKWLRRILQFFDLGWNS----SVLHHEEMINKPGGVFL 157 (158)
Q Consensus 122 ~p~~~l~~I~~fLGl~~~~----~~l~~~~~~~~~~~~~~ 157 (158)
-|+..++.|-+.+|++.+- .+..+.+++++-|||.|
T Consensus 113 G~~~~~~tVe~l~gv~Id~Yv~vn~~gf~~lVDaLGGV~V 152 (307)
T COG1316 113 GPRLLTQTVEKLTGVHIDHYAEVGFSGFADLVDAFGGVDV 152 (307)
T ss_pred cHHHHHHHHHHHhCCCCceEEEEehHHHHHHHHHcCCeee
Confidence 5777777777777777653 45566777777777654
No 46
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=22.60 E-value=64 Score=16.61 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhCCCCC
Q psy7627 123 PEKWLRRILQFFDLGWN 139 (158)
Q Consensus 123 p~~~l~~I~~fLGl~~~ 139 (158)
+...+.++++.+|++..
T Consensus 38 ~~~~~~~i~~~~~~~~~ 54 (56)
T smart00530 38 SLETLKKLAKALGVSLD 54 (56)
T ss_pred CHHHHHHHHHHhCCChh
Confidence 56778999999998753
No 47
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.56 E-value=1.1e+02 Score=15.56 Aligned_cols=17 Identities=18% Similarity=-0.019 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhCCCCCc
Q psy7627 124 EKWLRRILQFFDLGWNS 140 (158)
Q Consensus 124 ~~~l~~I~~fLGl~~~~ 140 (158)
..+++++|+..|++.+-
T Consensus 6 ~~~Lk~~l~~~gl~~~G 22 (35)
T smart00513 6 VSELKDELKKRGLSTSG 22 (35)
T ss_pred HHHHHHHHHHcCCCCCC
Confidence 46799999999999753
No 48
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=22.51 E-value=1e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=13.1
Q ss_pred HHHHHhhCCCCeEEEEEechhH
Q psy7627 44 ADYLSEIFPFAKFIFMVRDGRA 65 (158)
Q Consensus 44 ~~~i~~~fP~akiI~l~RdP~d 65 (158)
+..|++.||+++|-++++.+..
T Consensus 20 l~~Lr~~~P~a~I~~l~~~~~~ 41 (319)
T TIGR02193 20 LTDIKRALPDVEIDWVVEEGFA 41 (319)
T ss_pred HHHHHHhCCCCEEEEEEChhHh
Confidence 4455666666666666664443
No 49
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=22.02 E-value=44 Score=12.37 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=3.7
Q ss_pred CCCCCC
Q psy7627 1 MGFFTP 6 (158)
Q Consensus 1 ~~~~~~ 6 (158)
|||-|+
T Consensus 4 mgf~g~ 9 (10)
T PF08262_consen 4 MGFHGM 9 (10)
T ss_pred cccccc
Confidence 677654
No 50
>PRK14526 adenylate kinase; Provisional
Probab=21.90 E-value=3.4e+02 Score=20.07 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=65.8
Q ss_pred HHHHHHHHhhCCCCceeeecCCCCcccHHHHHhhCCCCeEEEEEechhHHHHHhhhcccc----cc--------------
Q psy7627 17 AFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVT----IT-------------- 78 (158)
Q Consensus 17 ~~y~~~~~~~~~~~~~~~~K~p~~~~~~~~i~~~fP~akiI~l~RdP~dv~~S~~~~~~~----~~-------------- 78 (158)
+.+.+.+........+++|-.|.+...+..+.+..|+..+|++. =|.+++......... ..
T Consensus 66 ~lv~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~~~~~vi~l~-~~~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~ 144 (211)
T PRK14526 66 KIVEDKINTIKNNDNFILDGFPRNINQAKALDKFLPNIKIINFL-IDEELLIKRLSGRRICKSCNNIFNIYTLPTKEKGI 144 (211)
T ss_pred HHHHHHHhcccccCcEEEECCCCCHHHHHHHHHhcCCCEEEEEE-CCHHHHHHHHHCCCcccccCCccccccCCCCccCc
Confidence 33344444433334578899999999998888888877666665 466666555432110 00
Q ss_pred -----------CCC-hhHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEechhhhcCHHHHHHHHHHHhCC
Q psy7627 79 -----------GFD-LESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDL 136 (158)
Q Consensus 79 -----------~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~l~v~YEdL~~~p~~~l~~I~~fLGl 136 (158)
.-| .+.+..-+..|.....-+.+++... ..+..|. =-++++.+.++|.+.|+.
T Consensus 145 ~~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~--~~~~~id---~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 145 CDVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKC--NRLNNID---ASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhc--CCEEEEE---CCCCHHHHHHHHHHHHcc
Confidence 001 1122333445555555566655542 3455554 345788888888887764
No 51
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=21.69 E-value=52 Score=20.68 Aligned_cols=27 Identities=7% Similarity=0.004 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCCCCcccchhhhhhc
Q psy7627 124 EKWLRRILQFFDLGWNSSVLHHEEMIN 150 (158)
Q Consensus 124 ~~~l~~I~~fLGl~~~~~~l~~~~~~~ 150 (158)
.+...++|+-+|+.+++++--+-+.+-
T Consensus 14 K~~a~~i~~~lGl~~s~ai~~fl~qvv 40 (83)
T TIGR02384 14 KKEAYAVFEELGLTPSTAIRMFLKQVI 40 (83)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 445566666666666655544444333
No 52
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=20.15 E-value=47 Score=21.48 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=28.3
Q ss_pred EEechhhhcCHH-HHHHHHHHHhCCCCC--cccchhhhhhcCCCCcc
Q psy7627 113 VVYYEQLVLHPE-KWLRRILQFFDLGWN--SSVLHHEEMINKPGGVF 156 (158)
Q Consensus 113 ~v~YEdL~~~p~-~~l~~I~~fLGl~~~--~~~l~~~~~~~~~~~~~ 156 (158)
.|.-|.-+.+|. .++.+.|+.||++.. ++-..+.++...+|-|-
T Consensus 19 rv~k~~aV~~P~~~EI~~a~~~Lgl~~~~E~~K~yPr~~~~~~GRV~ 65 (95)
T PF01922_consen 19 RVPKELAVENPTLEEIADACKKLGLPCVVEPDKRYPRDWWENPGRVR 65 (95)
T ss_dssp -SSTTTSBSS--HHHHHHHHHHTTSEEEEETTECTTCGSTSCTTEEE
T ss_pred ccChhhcCCCCCHHHHHHHHHHcCCCEEEccccCcChhhcccCceEE
Confidence 355566677887 789999999999853 34555666556666543
Done!