RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7627
(158 letters)
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 159 bits (403), Expect = 1e-48
Identities = 96/149 (64%), Positives = 120/149 (80%)
Query: 10 VINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHS 69
V++AA+ AF LEVIA+HGEPA LCNKDP TLKS+ YLS +FP +KF+ MVRDGRA+VHS
Sbjct: 110 VLDAAMQAFILEVIAKHGEPARVLCNKDPFTLKSSVYLSRLFPNSKFLLMVRDGRASVHS 169
Query: 70 IISRKVTITGFDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRR 129
+I+RKVTI GFDL SYR CL KWN+AI +MY +C+ VG +C+ VYYEQLVLHP + L+
Sbjct: 170 MITRKVTIAGFDLSSYRDCLTKWNKAIEVMYAQCMEVGKEKCLPVYYEQLVLHPRRSLKL 229
Query: 130 ILQFFDLGWNSSVLHHEEMINKPGGVFLS 158
IL F + W+ +VLHHE++I KPGGV LS
Sbjct: 230 ILDFLGIAWSDAVLHHEDLIGKPGGVSLS 258
>2zq5_A Putative uncharacterized protein; sulfotransferase fold; 2.00A
{Mycobacterium tuberculosis}
Length = 384
Score = 61.9 bits (149), Expect = 4e-12
Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 6/120 (5%)
Query: 26 HGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGF----- 80
+ +R K+P L + D L +P A + R + S+ S T
Sbjct: 221 LNDAEKRWVLKNPSHLFALDALMATYPDALVVQTHRPVETIMASMCSLAQHTTEGWSTKF 280
Query: 81 -DLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWN 139
+ + W+ + + ++ V Y L+ P + I + F L +
Sbjct: 281 VGAQIGADAMDTWSRGLERFNAARAKYDSAQFYDVDYHDLIADPLGTVADIYRHFGLTLS 340
>2z6v_A Putative uncharacterized protein; sulfotransferase, unknown
function; HET: PLM; 2.60A {Mycobacterium avium}
Length = 414
Score = 57.6 bits (138), Expect = 1e-10
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 8/116 (6%)
Query: 32 RLCNKDPLTLKSADYLSEIFPFAKFIFMVRDGRATVHSIISRKVTITGFDLESY----RQ 87
K P + L ++FP A+ I+ RD S+ + + + +
Sbjct: 244 SWSLKMPSHSVHIEALLKVFPDARLIWAHRDPYKATGSLCNLWRLPQSLVMNTELLDQTE 303
Query: 88 CLKKWNEAISIMYQKCLR----VGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWN 139
+ + + LR +G R +YY +++ P +RRI ++ D
Sbjct: 304 MGRLAMWQMRYHVDRPLRARERIGDERFFHMYYHEMMRDPMDVMRRIYEWADEPLT 359
>3uan_A Heparan sulfate glucosamine 3-O-sulfotransferase; alpha/beta motif,
CO-FACT PAPS/PAP, heparan sulfate oligosaccharides,
golgi-localized transferase; HET: A3P NGY BDP SGN IDS;
1.84A {Mus musculus} PDB: 1vkj_A* 1zrh_A*
Length = 269
Score = 35.5 bits (81), Expect = 0.003
Identities = 16/130 (12%), Positives = 42/130 (32%), Gaps = 17/130 (13%)
Query: 42 KSADYLSEIFPFAKFIFMVRDGRATVHSIISRKV----------TITGFDLESYRQCLKK 91
K + + + P + + ++RD V S ++ + L +
Sbjct: 90 KVPERIHSMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLD 149
Query: 92 WNEAISIMYQKCLR-----VGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHE 146
+ +Y + +V ++L+ P ++++ +F L + +
Sbjct: 150 YKALNRSLYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERF--LKLSPQINASN 207
Query: 147 EMINKPGGVF 156
NK G +
Sbjct: 208 FYFNKTKGFY 217
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.005
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 29/155 (18%)
Query: 5 TPNRMVINAAIAAFCLEVIARHGEPAERLCNKDPLTLKSADYLSEIFPFAKFIFM-VRDG 63
T + V + AA + H + LT L K++ +D
Sbjct: 272 TRFKQVTDFLSAATTTHISLDH--------HSMTLTPDEVKSL-----LLKYLDCRPQDL 318
Query: 64 RATVHSIISRKVTITGFDLESYRQCLKKWN-------EAISIMYQKCLRVGPSRCMVVYY 116
V + R+++I ES R L W+ + ++ + + L V +
Sbjct: 319 PREVLTTNPRRLSIIA---ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 117 EQLVLHPE--KWLRRILQFFDLGWNSSVLHHEEMI 149
++L + P +L W + ++
Sbjct: 376 DRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVV 407
Score = 32.1 bits (72), Expect = 0.067
Identities = 14/108 (12%), Positives = 27/108 (25%), Gaps = 39/108 (36%)
Query: 61 RDGRATVHSIISRKVTITGFDLESYR--QCLKKWNEAISI--MYQKCLRVGPSRCMVVYY 116
+ +H I ++ Y + + Y +Y
Sbjct: 439 LENEYALHRSI----------VDHYNIPKTFDSDDLIPPYLDQY--------------FY 474
Query: 117 EQLVLH------PEKW--LRRILQFFDLGW-NSSVLHHEEMINKPGGV 155
+ H PE+ R + F D + + H N G +
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHDSTAWNASGSI 520
Score = 29.8 bits (66), Expect = 0.44
Identities = 17/133 (12%), Positives = 29/133 (21%), Gaps = 38/133 (28%)
Query: 23 IARHGEPAERLCNKDPLTLKSA-DY-LSEIFPFAKFIFMVRDGR-----------ATVHS 69
+ G K + L Y + F IF + +
Sbjct: 153 VLIDGVLG---SGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNCNSPETVLEMLQKLLY 207
Query: 70 IISRKVTITGFDLESYRQCLKKWNEAISI-----MYQKCLRVGPSRCMVVYYEQLVLHPE 124
I T + + + + Y+ CL LVL
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------------LVLL-N 252
Query: 125 KWLRRILQFFDLG 137
+ F+L
Sbjct: 253 VQNAKAWNAFNLS 265
>3rnl_A Sulfotransferase; structural genomics, PSI-biology, midwest center
for structu genomics, MCSG, alpha-beta-alpha sandwich;
HET: MSE; 1.75A {Alicyclobacillus acidocaldarius subsp}
Length = 311
Score = 34.0 bits (77), Expect = 0.011
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 81 DLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNS 140
+ Y +K++ + G + V+ +E+ P + +R F LG ++
Sbjct: 163 AVGLYAAQVKRYLDV----------FGREQVKVILFEEFARDPVQVVRDCCAF--LGVST 210
Query: 141 SVLHHEEMINKPGGVF 156
+ + + GV
Sbjct: 211 DFVPDTSIRHNESGVP 226
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 33.0 bits (74), Expect = 0.030
Identities = 9/106 (8%), Positives = 24/106 (22%), Gaps = 19/106 (17%)
Query: 47 LSEIFPFAKFIFMVRDGRATVHSIISRKVTI-TG---------------FDLESYRQCLK 90
+ I + R V +S + T + + +
Sbjct: 149 RDVVGSDPVLIHIHR--PDVVSQAVSFWRAVQTRVWRGRPDPVRDARAEYHAGAIAHVIT 206
Query: 91 KWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDL 136
++ + V Y L + + + +L+
Sbjct: 207 MLRAQEE-GWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQ 251
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 32.4 bits (74), Expect = 0.038
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 105 RVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHEEMINK 151
R + + + YE L P I++F DLG E I +
Sbjct: 190 RFPNADVLTMRYEDLKGDPVARFSEIVEFLDLGGPVD----IEDIRR 232
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 29.4 bits (66), Expect = 0.45
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 98 IMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHEEMINK 151
+ Y R P++ + V YE+L E ++RI +F + G+ EE + +
Sbjct: 210 LEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFIE-----EEEVRE 258
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 27.7 bits (62), Expect = 1.9
Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 18/101 (17%)
Query: 54 AKFIFMVRDGRATV-----HSIISRKVTIT------------GFDLESYRQCLKKWNE-A 95
AK + ++R+ R + I + GF W E
Sbjct: 101 AKVVCLIRNPRDAMLSLMRMKGIPPEDVEACRKIAETFIADEGFSSVRIWAGEGSWPENI 160
Query: 96 ISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDL 136
S + + V YE L PE L +++ F +L
Sbjct: 161 RSWTDSVHESFPNAAVLAVRYEDLRKDPEGELWKVVDFLEL 201
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 27.6 bits (61), Expect = 2.1
Identities = 5/36 (13%), Positives = 12/36 (33%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
+ ++YE + + RI F + +
Sbjct: 240 DPNMLFLFYEDYLKDLPGCIARIADFLGKKLSEEQI 275
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 26.6 bits (59), Expect = 3.8
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
R + ++YE + +P+ +++IL+F + +L
Sbjct: 185 EYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEIL 220
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 26.3 bits (58), Expect = 4.4
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
R + ++YE + P++ + +IL+F + + +L
Sbjct: 195 MHRILYLFYEDIKKDPKREIEKILKFLEKDISEEIL 230
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 25.9 bits (57), Expect = 6.2
Identities = 5/49 (10%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWN----SSVLHHEEMINKP 152
S + + YE + + ++ +F + + ++ H +
Sbjct: 188 DSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALTEHCHQLVDQ 236
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 25.9 bits (57), Expect = 6.5
Identities = 7/36 (19%), Positives = 19/36 (52%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
R + ++YE + +P+ ++++ +F + VL
Sbjct: 188 KHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVL 223
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 26.1 bits (58), Expect = 6.7
Identities = 7/69 (10%), Positives = 17/69 (24%), Gaps = 14/69 (20%)
Query: 3 FFTPNRMVINAAIAAFCLEVI---ARHGEPAERLCN-----------KDPLTLKSADYLS 48
+ +F ++ + + D +TL L
Sbjct: 77 TISKGIDGGMPWRRSFGBNIVYTDWKRDNFYSAVKKLVKGAKZIGIEHDHVTLBHRRZLZ 136
Query: 49 EIFPFAKFI 57
+ P +F+
Sbjct: 137 KALPGTEFV 145
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 25.5 bits (56), Expect = 8.5
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFD 135
+ + YE+L + + RI F
Sbjct: 189 KDNFLFITYEELQQDLQGSVERICGFLG 216
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 25.4 bits (56), Expect = 8.9
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFD 135
+++ YE+L + + +I QF
Sbjct: 184 EKNFLLLSYEELKQDTGRTIEKICQFLG 211
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 25.5 bits (56), Expect = 9.3
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
+ + ++YE + P+ +R+++QF + +VL
Sbjct: 186 RHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVL 221
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 25.5 bits (56), Expect = 9.5
Identities = 5/36 (13%), Positives = 20/36 (55%)
Query: 108 PSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVL 143
SR + ++YE + + + ++++F + ++ ++
Sbjct: 187 NSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELV 222
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.446
Gapped
Lambda K H
0.267 0.0497 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,622,052
Number of extensions: 144771
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 37
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)