RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7627
         (158 letters)



>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
           smegmatis [TaxId: 1772]}
          Length = 265

 Score = 47.0 bits (110), Expect = 1e-07
 Identities = 8/122 (6%), Positives = 25/122 (20%), Gaps = 15/122 (12%)

Query: 32  RLCNKDPLTLKSADYLSEIFPFAKFIFMV-RDGRATVHSIISRKVTITG----------- 79
           +       +   +     +      I +   D  +   S      T              
Sbjct: 112 KDLPDRSGSGLLSAIRDVVGSDPVLIHIHRPDVVSQAVSFWRAVQTRVWRGRPDPVRDAR 171

Query: 80  --FDLESYRQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLG 137
             +   +    +          ++          + V Y  L  +  + +  +L+     
Sbjct: 172 AEYHAGAIAHVITMLRAQEE-GWRAWFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQD 230

Query: 138 WN 139
             
Sbjct: 231 PR 232


>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 258

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 15/118 (12%)

Query: 49  EIFPFAKFIFMVRDGRATVHSI---------ISRKVTITGFDLESYRQCLKKWNEAISI- 98
            + P  + + ++RD    V S             K      DL      L    +A++  
Sbjct: 86  SMNPTIRLLLILRDPSERVLSDYTQVLYNHLQKHKPYPPIEDLLMRDGRLNLDYKALNRS 145

Query: 99  MYQKCLR-----VGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHHEEMINK 151
           +Y   +             +V  ++L+  P   ++++ +F  L    +  +      K
Sbjct: 146 LYHAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQINASNFYFNKTK 203


>d1m1ha1 b.114.1.1 (A:51-131) N-utilization substance G protein
           NusG, insert domain {Aquifex aeolicus [TaxId: 63363]}
          Length = 81

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 74  KVTITGFDLESYRQCLKKWNEAISIMYQKCL 104
           KV I     E YR  LK     IS++ +K +
Sbjct: 3   KVVIRAQGKEKYRLSLKGNARDISVLGKKGV 33


>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid
          3/5-O-methyltransferase {Alfalfa (Medicago sativa)
          [TaxId: 3879]}
          Length = 107

 Score = 24.0 bits (52), Expect = 5.9
 Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 1  MGFFTPNRMVINAAIAAFCLEVIARHGEPA 30
               P  M++ +A+    LE+IA+ G  A
Sbjct: 16 SASVLP--MILKSALELDLLEIIAKAGPGA 43


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
           coli [TaxId: 562]}
          Length = 268

 Score = 24.5 bits (52), Expect = 6.8
 Identities = 9/74 (12%), Positives = 13/74 (17%), Gaps = 3/74 (4%)

Query: 86  RQCLKKWNEAISIMYQKCLRVGPSRCMVVYYEQLVLHPEKWLRRILQFFDLGWNSSVLHH 145
                   E  +           +           +     L       D          
Sbjct: 100 HAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK 159

Query: 146 -EEMIN--KPGGVF 156
            EE+    KPGG  
Sbjct: 160 AEELARVVKPGGWV 173


>d1h05a_ c.23.13.1 (A:) Type II 3-dehydroquinate dehydratase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 144

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 68  HSIISRKV--TITGFDLESYRQCLKKWNEAIS 97
           HS +S      I G  ++ Y   L+   E + 
Sbjct: 112 HSYLSPIATGVIVGLGIQGYLLALRYLAEHVG 143


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 646,976
Number of extensions: 29056
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.0 bits)