BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7629
(468 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54FG0|Y0883_DICDI TNF receptor-associated factor family protein DDB_G0290883
OS=Dictyostelium discoideum GN=DDB_G0290883 PE=3 SV=1
Length = 460
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 21 ELLQSAAKLSIPRGKTKRFNYFWNKKLSVLKSERNAARKRAEKSNLLSDTVEWRKRAAIL 80
E LQ K + P F + + K++ KS +A ++ EKS +E +K
Sbjct: 17 ESLQKKNKYTCPIC----FEFIYKKQIYQCKSGHHACKECWEKS------LETKKECMTC 66
Query: 81 KKEINSSKRSSFNTFVEKMDYRKDGPKAYSFISSIKKGQTSVNKPFSHNGRSISDSKKI 139
K +NS S VE+ +K+ YSF I +G T+ + P +G S + +K+
Sbjct: 67 KSVVNSYNDLSRCLMVERAFDKKECCCIYSFTEQIVQGGTNCSPP---DGASDQNQRKL 122
>sp|P11467|DG17_DICDI RING finger protein DG17 OS=Dictyostelium discoideum GN=zfaA PE=2
SV=2
Length = 460
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 13/119 (10%)
Query: 21 ELLQSAAKLSIPRGKTKRFNYFWNKKLSVLKSERNAARKRAEKSNLLSDTVEWRKRAAIL 80
E LQ K + P F + + K++ KS +A ++ EKS +E +K
Sbjct: 17 ESLQKKNKYTCPIC----FEFIYKKQIYQCKSGHHACKECWEKS------LETKKECMTC 66
Query: 81 KKEINSSKRSSFNTFVEKMDYRKDGPKAYSFISSIKKGQTSVNKPFSHNGRSISDSKKI 139
K +NS S VE+ +K+ YSF I +G T+ + P +G S + +K+
Sbjct: 67 KSVVNSYNDLSRCLMVERAFDKKECCCIYSFNEQIVEGGTNCSPP---DGASDQNQRKL 122
>sp|Q775Q3|RP132_CAMPS DNA-directed RNA polymerase 132 kDa polypeptide OS=Camelpox virus
(strain CMS) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 3 NFEISENSSTDKVNKEFCELLQSAAKLSIPRGKTKRFNYFWNKKLSVLKSERNAARKRAE 62
N ++SE +DK+ FCE + + P G F + +L L ++ R R +
Sbjct: 977 NPKLSEEELSDKI---FCEKILYDPETDKPYGSKVFFGPIYYLRLRHLTQDKATVRCRGK 1033
Query: 63 KSNLLSDTVEWRKRAAILK 81
K+ L+ E RKR +K
Sbjct: 1034 KTKLIRQANEGRKRGGGIK 1052
>sp|Q8V2N1|RP132_CAMPM DNA-directed RNA polymerase 132 kDa polypeptide OS=Camelpox virus
(strain M-96) GN=RPO132 PE=3 SV=1
Length = 1164
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 3 NFEISENSSTDKVNKEFCELLQSAAKLSIPRGKTKRFNYFWNKKLSVLKSERNAARKRAE 62
N ++SE +DK+ FCE + + P G F + +L L ++ R R +
Sbjct: 977 NPKLSEEELSDKI---FCEKILYDPETDKPYGSKVFFGPIYYLRLRHLTQDKATVRCRGK 1033
Query: 63 KSNLLSDTVEWRKRAAILK 81
K+ L+ E RKR +K
Sbjct: 1034 KTKLIRQANEGRKRGGGIK 1052
>sp|P44105|T3RH_HAEIN Putative type III restriction-modification system HindVIP enzyme
res OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=HI_1055 PE=3 SV=1
Length = 514
Score = 32.7 bits (73), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 150 KYNIPKHEVLLTTSKTNKQKIEKVQNEALRLVTG-AVKTTPINAMYALTQNQSLSDII 206
K N KH V++T S+TNK K EK +E +L+ PI A++ + + D++
Sbjct: 412 KQNYQKHNVIITNSETNKSKTEKTDSETEKLLNNLEAADNPIRAIFTVDRLTEGWDVL 469
>sp|Q9CBA4|HTPX_MYCLE Protease HtpX homolog OS=Mycobacterium leprae (strain TN) GN=htpX
PE=3 SV=1
Length = 287
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 224 NFWTTYKEDPTKLKTQTGYIQEVKKIK--LLTEIPDKKENLLHPPNPMDSFEITHSLFLE 281
N +T Y D KL + + Q V +++ ++ I + H P P T++
Sbjct: 46 NVYTYYNSD--KLALRAMHAQPVSEVQAPVMYRIVRELATGAHQPMPRLYISDTNAPNAF 103
Query: 282 ETFRKQDVAPLIAKTMALETINTR----YPSDDWLHIYTDGSLINPEDGAGAGIFCELFS 337
T R A + T LE +N R + H+Y LI+ GA AG+ L +
Sbjct: 104 ATGRNPRNAAVCCTTGILEILNERELRAVLGHELSHVYNRDILISCVAGALAGVITALAN 163
Query: 338 FYKRLGTFTTNFDGE--IAAIKIALL 361
GTF T D E A + ++LL
Sbjct: 164 MAMWAGTFGTTRDEENPFALLLVSLL 189
>sp|B8ZSY8|HTPX_MYCLB Protease HtpX homolog OS=Mycobacterium leprae (strain Br4923)
GN=htpX PE=3 SV=1
Length = 287
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 10/146 (6%)
Query: 224 NFWTTYKEDPTKLKTQTGYIQEVKKIK--LLTEIPDKKENLLHPPNPMDSFEITHSLFLE 281
N +T Y D KL + + Q V +++ ++ I + H P P T++
Sbjct: 46 NVYTYYNSD--KLALRAMHAQPVSEVQAPVMYRIVRELATGAHQPMPRLYISDTNAPNAF 103
Query: 282 ETFRKQDVAPLIAKTMALETINTR----YPSDDWLHIYTDGSLINPEDGAGAGIFCELFS 337
T R A + T LE +N R + H+Y LI+ GA AG+ L +
Sbjct: 104 ATGRNPRNAAVCCTTGILEILNERELRAVLGHELSHVYNRDILISCVAGALAGVITALAN 163
Query: 338 FYKRLGTFTTNFDGE--IAAIKIALL 361
GTF T D E A + ++LL
Sbjct: 164 MAMWAGTFGTTRDEENPFALLLVSLL 189
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,381,173
Number of Sequences: 539616
Number of extensions: 6880116
Number of successful extensions: 20449
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 20440
Number of HSP's gapped (non-prelim): 54
length of query: 468
length of database: 191,569,459
effective HSP length: 121
effective length of query: 347
effective length of database: 126,275,923
effective search space: 43817745281
effective search space used: 43817745281
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)