Query psy7629
Match_columns 468
No_of_seqs 254 out of 1185
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:14:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h08_A RNH (ribonuclease H); R 100.0 1.5E-29 5.2E-34 227.3 9.7 132 311-454 4-146 (146)
2 2qkb_A Ribonuclease H1, HS-RNA 100.0 1.2E-28 4.3E-33 223.6 14.1 134 310-452 6-151 (154)
3 2lsn_A Reverse transcriptase; 100.0 8.4E-29 2.9E-33 228.7 12.3 133 311-452 7-163 (165)
4 3qio_A GAG-POL polyprotein; RN 100.0 1.2E-28 4.2E-33 223.9 11.3 132 308-452 9-147 (150)
5 1jl1_A Ribonuclease HI; RNAse 100.0 2.6E-28 8.8E-33 222.2 12.1 133 311-455 4-146 (155)
6 2e4l_A Ribonuclease HI, RNAse 99.9 6E-28 2E-32 220.6 11.2 130 311-452 6-145 (158)
7 1ril_A Ribonuclease H; hydrola 99.9 2.2E-27 7.4E-32 218.8 7.9 131 311-453 8-149 (166)
8 3p1g_A Xenotropic murine leuke 99.9 1.5E-23 5.2E-28 193.4 11.8 123 311-455 23-159 (165)
9 2kq2_A Ribonuclease H-related 99.9 7.4E-23 2.5E-27 184.8 3.4 125 310-458 5-143 (147)
10 3hst_B Protein RV2228C/MT2287; 99.8 4.1E-21 1.4E-25 169.7 12.5 123 311-452 3-133 (141)
11 3u3g_D Ribonuclease H, RNAse H 99.8 1.2E-21 4.1E-26 172.2 8.9 119 311-452 3-137 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.8 2.4E-20 8.2E-25 167.4 12.4 123 312-454 2-136 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 4.9E-18 1.7E-22 182.9 10.8 114 310-450 435-555 (555)
14 4htu_A Ribonuclease H, RNAse H 99.7 8.8E-18 3E-22 149.8 8.1 95 311-418 5-103 (134)
15 2zd1_A Reverse transcriptase/r 99.7 6.2E-18 2.1E-22 182.2 6.5 113 310-449 438-557 (557)
16 1zbf_A Ribonuclease H-related 99.7 8.1E-18 2.8E-22 151.6 3.0 114 310-439 10-129 (142)
17 1rw3_A POL polyprotein; RNA an 80.2 0.67 2.3E-05 48.0 2.2 72 311-389 346-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 48.8 34 0.0012 35.0 7.3 76 310-390 323-407 (428)
19 2fr5_A Cytidine deaminase; tet 22.7 1.3E+02 0.0046 26.2 5.8 53 325-380 36-92 (146)
No 1
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.96 E-value=1.5e-29 Score=227.26 Aligned_cols=132 Identities=20% Similarity=0.150 Sum_probs=110.3
Q ss_pred cEEEEEeccccCCCCceEEEEEEecCe----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELFS----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~~----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
.++|||||||.+|++.+|+|+++.++. ++..++ .+||++|||.|++.||+.+.+ ..+|.|+|||+||+++|
T Consensus 4 ~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~A~~~AL~~~~~----~~~v~I~tDS~~vi~~i 78 (146)
T 3h08_A 4 TITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYDP-ATTNNRMELMAAIKGLEALKE----PARVQLYSDSAYLVNAM 78 (146)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS----CCEEEEEESCHHHHHHH
T ss_pred eEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCCC-CCcHHHHHHHHHHHHHHhcCc----cCcEEEEeChHHHHHHH
Confidence 789999999998888899999876543 244444 469999999999999999853 57899999999999999
Q ss_pred hc-ccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhcCC
Q psy7629 387 TN-CSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKTSP 454 (468)
Q Consensus 387 ~~-~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~~p 454 (468)
+. |... |+++||+++.|.+|+|+++++.|. ++..+ .|.|.|||||+ |.||+||++|+...|
T Consensus 79 ~~~w~~~--W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-----~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~p 146 (146)
T 3h08_A 79 NEGWLKR--WVKNGWKTAAKKPVENIDLWQEILKLTTLH-----RVTFHKVKGHSDNPYNSRADELARLAIKENS 146 (146)
T ss_dssp HSSHHHH--HHHTTCC----CCCTTHHHHHHHHHHHHHS-----EEEEEECCC-CCSHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHH--HHHCCCccCCCCCcCCHHHHHHHHHHHhhC-----ceEEEEcCCcCCcHhHHHHHHHHHHHHHhCc
Confidence 99 9888 999999999999999999999998 65543 69999999998 999999999998765
No 2
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.96 E-value=1.2e-28 Score=223.56 Aligned_cols=134 Identities=25% Similarity=0.267 Sum_probs=118.1
Q ss_pred CcEEEEEeccccCCCCc---eEEEEEEecCe---EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHH
Q psy7629 310 DWLHIYTDGSLINPEDG---AGAGIFCELFS---FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAI 383 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~---aG~GVv~~~~~---~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai 383 (468)
+.++|||||||.+|++. +|+||++.++. ++..++..+||++|||+|++.||+.+.+. +..+|.|+|||+||+
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~--~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQ--NINKLVLYTNSMFTI 83 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHT--TCCEEEEEESCHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhC--CCceEEEEECcHHHH
Confidence 47999999999888754 89999986543 46677656799999999999999999875 578999999999999
Q ss_pred HHhhcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhc
Q psy7629 384 QSITNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKT 452 (468)
Q Consensus 384 ~~I~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~ 452 (468)
++|+.|..+ |+++||+++.|.+++|++++++|. ++.. ..|.|.|||||+ +.||+||++|+..
T Consensus 84 ~~i~~~~~~--w~~~~w~~~~~~~~~n~~l~~~i~~l~~~-----~~v~~~~V~~H~g~~~N~~AD~LA~~a~~~ 151 (154)
T 2qkb_A 84 NGITNWVQG--WKKNGWKTSAGKEVINKEDFVALERLTQG-----MDIQWMHVPGHSGFIGNEEADRLAREGAKQ 151 (154)
T ss_dssp HHHHTHHHH--HHTTTSBCTTSSBCTTHHHHHHHHHHHTT-----CEEEEEECCTTSSCHHHHHHHHHHHHHHTC
T ss_pred hhhhhhHHH--HHhccccccCCCccccHHHHHHHHHHHcC-----CceEEEEccCCCCCHhHHHHHHHHHHHHHh
Confidence 999999988 999999999999999999999998 6543 369999999998 9999999999875
No 3
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.96 E-value=8.4e-29 Score=228.68 Aligned_cols=133 Identities=23% Similarity=0.198 Sum_probs=107.0
Q ss_pred cEEEEEeccccCCCCc-----eEEEEEEecCe----EEeecC---ccccchHHHHHHHHHHHHHHHhhcCCCceEEEEec
Q psy7629 311 WLHIYTDGSLINPEDG-----AGAGIFCELFS----FYKRLG---TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSD 378 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~-----aG~GVv~~~~~----~~~~L~---~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TD 378 (468)
.++|||||||.+|+++ +|||||+.... .....+ ...|+++||+.|+..||+.+.. ...+|.|+||
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~---~~~~v~I~TD 83 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALK---IPGPVLVITD 83 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHH---SSSCEEEEES
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhc---CCCeEEEEeC
Confidence 6899999999999886 89999875332 222211 2236677777777777776654 3467999999
Q ss_pred CHHHHHHhhcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----------HHHHHHH
Q psy7629 379 SKAAIQSITNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----------CLAEHLH 446 (468)
Q Consensus 379 Sqyai~~I~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----------E~AD~LA 446 (468)
|+||+++|+.|... |++|||+++.|+||+|++||+.|. ++... ..|.|.|||||+ |+||+||
T Consensus 84 S~Yvi~~it~w~~~--Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~----~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA 157 (165)
T 2lsn_A 84 SFYVAESANKELPY--WKSNGFVNNKKKPLKHISKWKSIAECLSMK----PDITIQHEKGHQPTNTSIHTEGNALADKLA 157 (165)
T ss_dssp CHHHHHHHHTHHHH--HHHTTSCSCSSSCCSSHHHHHHHHHHHHHC----TTCEEEECCSSSCSSSCHHHHHHHHHHHHH
T ss_pred hHHHHhhhhhhhhh--heeccccccCCCcccCHHHHHHHHHHHhCC----CCEEEEEEeCCCCccCCCCChHHHHHHHHH
Confidence 99999999999988 999999999999999999999988 55432 369999999993 8999999
Q ss_pred HHhhhc
Q psy7629 447 RFGLKT 452 (468)
Q Consensus 447 K~Aa~~ 452 (468)
++|+..
T Consensus 158 ~~gA~~ 163 (165)
T 2lsn_A 158 TQGSYV 163 (165)
T ss_dssp HHHHHH
T ss_pred HHhhhh
Confidence 999864
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.95 E-value=1.2e-28 Score=223.88 Aligned_cols=132 Identities=20% Similarity=0.118 Sum_probs=102.4
Q ss_pred CCCcEEEEEeccccCCCCceEEEEEEecCe-EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 308 SDDWLHIYTDGSLINPEDGAGAGIFCELFS-FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 308 ~~~~i~IYTDGS~~~n~~~aG~GVv~~~~~-~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
..+.++|||||||.+|++++|+|+++.++. ....++ .+||++|||+|++.||+.+ ..+|.|+|||+||+++|
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~-~~Tnn~aEl~A~i~AL~~~------~~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLT-DTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALGII 81 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHHS------CSEEEEEESCHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeCC-CCCHHHHHHHHHHHHHHhC------CCcEEEEeCcHHHHHHH
Confidence 345899999999999999999998876544 333444 5699999999999999984 27899999999999999
Q ss_pred hcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhc
Q psy7629 387 TNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKT 452 (468)
Q Consensus 387 ~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~ 452 (468)
+.|..+ |++|||+++.|++|+|+++++.+. .+. ++..|.|.|||||+ |.||+||++|+++
T Consensus 82 ~~w~~~--W~~~gw~~~~g~~v~n~~l~~~l~~~l~----~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 82 TQWIHN--WKKRGWKTADKKPVKNVDLVNQIIEQLI----KKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHH--HCC------------CHHHHHHHHHHHT----TCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHH--HhhcCcCcCcCcccccHHHHHHHHHHHh----hcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 999988 999999999999999999999886 443 24689999999998 9999999999875
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.95 E-value=2.6e-28 Score=222.21 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=115.5
Q ss_pred cEEEEEeccccCCCCceEEEEEEecCe----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELFS----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~~----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
.++|||||||.+|++.+|+|+++.+.+ +++.++ .+||++|||.|++.||+.+.+ ..+|.|+|||+||+++|
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~~~~----~~~v~I~tDS~~vi~~i 78 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGYT-RTTNNRMELMAAIVALEALKE----HAEVILSTDSQYVRQGI 78 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCCS----CCEEEEEECCHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCCC-CCcHHHHHHHHHHHHHHHhCc----CCcEEEEeCHHHHHHHH
Confidence 689999999998888899998875432 244443 459999999999999999853 37899999999999999
Q ss_pred hcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhcCCC
Q psy7629 387 TNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKTSPI 455 (468)
Q Consensus 387 ~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~~pi 455 (468)
+.|..+ |++|||+++.|++|+|+++++.|. +++. ..|.|.|||||+ +.||+||++|+...++
T Consensus 79 ~~w~~~--W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-----~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 79 TQWIHN--WKKRGWKTADKKPVKNVDLWQRLDAALGQ-----HQIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp HTTHHH--HHHTTTBCTTSCBCTTHHHHHHHHHHTTT-----CEEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHH--HhhcccccccCCccCCHHHHHHHHHHHcc-----CceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 999988 999999999999999999999988 5542 479999999997 9999999999987665
No 6
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.95 E-value=6e-28 Score=220.61 Aligned_cols=130 Identities=22% Similarity=0.247 Sum_probs=113.7
Q ss_pred cEEEEEeccccCCCCceEEEEEEecCe----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELFS----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~~----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
.++|||||||.+|++.+|+|+++.+++ +++.++ .+||++|||.|++.||+.+.+ ..+|.|+|||+||+++|
T Consensus 6 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~AL~~~~~----~~~v~I~tDS~~vi~~i 80 (158)
T 2e4l_A 6 LIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGFS-LTTNNRMELLAPIVALEALKE----PCKIILTSDSQYMRQGI 80 (158)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEEE-EECHHHHHHHHHHHHHHTCSS----CCEEEEEECCHHHHHHH
T ss_pred eEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCcC-CCccHHHHHHHHHHHHHHhcc----CCeEEEEeCHHHHHHHH
Confidence 689999999998888899999875433 244444 469999999999999998742 37899999999999999
Q ss_pred hcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhc
Q psy7629 387 TNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKT 452 (468)
Q Consensus 387 ~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~ 452 (468)
+.|..+ |++|||+++.|++|+|+++++.|. ++.. ..|.|.|||||+ +.||+||++|+..
T Consensus 81 ~~w~~~--W~~n~~~~~~g~~v~n~~l~~~i~~l~~~-----~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 81 MTWIHG--WKKKGWMTSNRTPVKNVDLWKRLDKAAQL-----HQIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HTHHHH--HHHTTTBCTTSSBCTTHHHHHHHHHHHTT-----SEEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHH--HHHccccccCCCcccCHHHHHHHHHHHcc-----CcEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 999988 999999999999999999999988 6543 479999999997 9999999999987
No 7
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.94 E-value=2.2e-27 Score=218.82 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=113.0
Q ss_pred cEEEEEeccccCCCCceEEEEEEecCe----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELFS----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~~----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
.++|||||||.+|++.+|+|+|+.+.. ++...+ .+||++|||.|++.||+.+.+ ...|.|+|||+||+++|
T Consensus 8 ~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~-~~Tnn~aEl~Ai~~AL~~~~~----~~~v~I~tDS~~vi~~i 82 (166)
T 1ril_A 8 RVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEA-CTTNNRMELKAAIEGLKALKE----PCEVDLYTDSHYLKKAF 82 (166)
T ss_dssp CCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEE-EECHHHHHHHHHHHHHHSCCS----CCEEEEECCCHHHHHHH
T ss_pred cEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCC-CCcHHHHHHHHHHHHHHHhcc----CCeEEEEeChHHHHHHH
Confidence 688999999998888899999885432 233333 469999999999999998753 35899999999999999
Q ss_pred hc-ccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhcC
Q psy7629 387 TN-CSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKTS 453 (468)
Q Consensus 387 ~~-~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~~ 453 (468)
+. |... |++|||++++|++|+|+++++.|. ++.. ..|.|.|||||+ +.||+||++|+...
T Consensus 83 ~~~w~~~--W~~~~w~~~~g~~v~n~~l~~~i~~l~~~-----~~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 83 TEGWLEG--WRKRGWRTAEGKPVKNRDLWEALLLAMAP-----HRVRFHFVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp HSSHHHH--HHHTTSBCTTSSBCTTHHHHHHHHHHHTT-----SEEECCCCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred hhhHHHH--HHhcccccccCCccCcHHHHHHHHHHHhc-----CeEEEEEeeCCCCchhHHHHHHHHHHHHHHh
Confidence 99 9988 999999999999999999999998 6543 379999999997 99999999999764
No 8
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=1.5e-23 Score=193.42 Aligned_cols=123 Identities=20% Similarity=0.134 Sum_probs=100.3
Q ss_pred cEEEEEeccccCCCCceEEEEEEecCe--E-EeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHhh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELFS--F-YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSIT 387 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~~--~-~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I~ 387 (468)
.+.|||||||.+|++.+|+|+++..++ . ...++..+|||+|||.|++.||+.+ ...++.|+|||+||+++|
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-----~~~~v~I~tDS~~vi~~i- 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-----EGKKLNVYTDSRYAFATA- 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-----BTSEEEEEECCHHHHHHH-
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-----cCceEEEEEchHHHHhhh-
Confidence 589999999988888899998654333 2 3345566799999999999999998 257899999999999988
Q ss_pred cccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh----------HHHHHHHHHhhhcCCC
Q psy7629 388 NCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD----------CLAEHLHRFGLKTSPI 455 (468)
Q Consensus 388 ~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~----------E~AD~LAK~Aa~~~pi 455 (468)
|. ++.|++|+|+++|+++. .+. ++..|.|.|||||+ |.||+||++|+.+.+.
T Consensus 97 -w~-----------~~~g~~v~n~dl~~~l~~~l~----~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~~ 159 (165)
T 3p1g_A 97 -HV-----------HSEGREIKNKNEILALLKALF----LPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAVL 159 (165)
T ss_dssp -HS-----------CCCSCCCSSHHHHHHHHHHTT----SBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -hc-----------ccCCCcccCHHHHHHHHHHHh----cCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCCC
Confidence 32 34789999999999885 432 35689999999985 9999999999987543
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.86 E-value=7.4e-23 Score=184.81 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=94.4
Q ss_pred CcEEEEEeccccCCCCceEEEEEEecC-e---EEe-ec--Cc--cccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCH
Q psy7629 310 DWLHIYTDGSLINPEDGAGAGIFCELF-S---FYK-RL--GT--FTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSK 380 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~aG~GVv~~~~-~---~~~-~L--~~--~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSq 380 (468)
+.++|||||||.+ +.+|+|+|+.++ . ++. .. +. .+|||+|||.|++.||+.+.+. +. +|.|+|||+
T Consensus 5 ~~i~iytDGs~~~--g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~--~~-~v~I~tDS~ 79 (147)
T 2kq2_A 5 TEYDVYTDGSYVN--GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL--GV-KIRILHDYA 79 (147)
T ss_dssp SCCEEECCCCCBT--TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH--TC-CCCBSSCCS
T ss_pred CeEEEEECCCCCC--CCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC--CC-eEEEEECcH
Confidence 4789999999955 679999887533 3 233 22 22 3599999999999999998775 44 899999997
Q ss_pred HHHHHhhcccCCchhhhccCcccCCCCcchHHHHHHHHhcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhhhcCCC
Q psy7629 381 AAIQSITNCSEDPSIKHNKRLRNEGQGKKWQQILNTHDIIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGLKTSPI 455 (468)
Q Consensus 381 yai~~I~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa~~~pi 455 (468)
.+. + |..++|+++.+.++.+.++++. +.. .|.|.|||||+ |.||+||++|+...++
T Consensus 80 ~i~----~------w~~~~w~~~~~~~~~~~~l~~~------l~~---~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 140 (147)
T 2kq2_A 80 GIA----F------WATGEWKAKNEFTQAYAKLMNQ------YRG---IYSFEKVKAHSGNEFNDYVDMKAKSALGIRDL 140 (147)
T ss_dssp THH----H------HTTSSSSCCHHHHHHHHCGGGG------GST---TCCBCCCCCCCCCHHHHHHHHHHHHHHTCCCT
T ss_pred HHH----H------HHhCCCccCCcchHHHHHHHHH------hcC---CeeEEEecCcCCCcchHHHHHHHHHHHhcccc
Confidence 444 3 5556888877666666555443 322 69999999998 9999999999988766
Q ss_pred CCC
Q psy7629 456 GSR 458 (468)
Q Consensus 456 ~~r 458 (468)
..+
T Consensus 141 ~~~ 143 (147)
T 2kq2_A 141 EHH 143 (147)
T ss_dssp TCC
T ss_pred ccc
Confidence 543
No 10
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.85 E-value=4.1e-21 Score=169.70 Aligned_cols=123 Identities=19% Similarity=0.148 Sum_probs=95.2
Q ss_pred cEEEEEeccccCCCCceEEEEEEecC--e-----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHH
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELF--S-----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAI 383 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~--~-----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai 383 (468)
.+.||||||+.++++.+|+|+++.+. + +...++ .+||++||+.|++.||+.+.+. +..+|.|+|||++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~-~~tn~~aEl~A~~~aL~~a~~~--~~~~v~i~tDS~~vv 79 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIG-RATNNVAEYRGLIAGLDDAVKL--GATEAAVLMDSKLVV 79 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHH--TCSEEEEEESCHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCC-CCchHHHHHHHHHHHHHHHHHC--CCceEEEEeChHHHH
Confidence 58999999998888889999887542 2 234444 5699999999999999999876 678999999999999
Q ss_pred HHhhcccCCchhhhccCcccCCCCcchHHHHHHHHhcCCCCCCCcceEEEEEcchh-HHHHHHHHHhhhc
Q psy7629 384 QSITNCSEDPSIKHNKRLRNEGQGKKWQQILNTHDIIPNLPRKAAVAHFRLLTGHD-CLAEHLHRFGLKT 452 (468)
Q Consensus 384 ~~I~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~li~~l~~~g~~V~f~WVpgH~-E~AD~LAK~Aa~~ 452 (468)
++++.. |+ +++.+++..+..+..+..++..|.|.|||++. +.||+||++|+..
T Consensus 80 ~~i~~~-----~~-----------~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~ 133 (141)
T 3hst_B 80 EQMSGR-----WK-----------VKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDA 133 (141)
T ss_dssp HHHTTS-----SC-----------CCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred HHHhCC-----cc-----------cCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHH
Confidence 999862 21 33455554433222333345789999999988 9999999999875
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.85 E-value=1.2e-21 Score=172.20 Aligned_cols=119 Identities=20% Similarity=0.164 Sum_probs=92.7
Q ss_pred cEEEEEeccccCCCCceEEEEEEec-C-e----EEeecCccccchHHHHHHHHHHHHHHHhhcCCCc----eEEEEecCH
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCEL-F-S----FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFE----RAVILSDSK 380 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~-~-~----~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~----~v~I~TDSq 380 (468)
.+.||||||+.+|++.+|+|+++.+ + . +...++. +||++||+.|++.||+.+.+. +.. +|.|+|||+
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~-~tn~~aEl~A~~~aL~~a~~~--~~~~~~~~v~i~tDS~ 79 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGE-TTNNVAEYEALIRALEDLQMF--GDKLVDMEVEVRMDSE 79 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEE-ECHHHHHHHHHHHHHHHHGGG--GGGGTTCEEEEEESCH
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCC-CchHHHHHHHHHHHHHHHHHc--CCCCCCceEEEEeChH
Confidence 6899999999988888999998855 2 2 2334444 599999999999999999865 455 999999999
Q ss_pred HHHHHhhcccCCchhhhccCcccCCCCcch---HHHHHHHH-h-cCCCCCCCcceEEEEEcchh-HHHHHHHHHhhhc
Q psy7629 381 AAIQSITNCSEDPSIKHNKRLRNEGQGKKW---QQILNTHD-I-IPNLPRKAAVAHFRLLTGHD-CLAEHLHRFGLKT 452 (468)
Q Consensus 381 yai~~I~~~~~~~~Wk~ngW~ts~G~~V~n---~~li~~I~-l-i~~l~~~g~~V~f~WVpgH~-E~AD~LAK~Aa~~ 452 (468)
+++++++.+ |+ ++| .++++.+. + +.. ...|.|.|||++. +.||+||++|+..
T Consensus 80 ~vi~~i~~~-----~~-----------~~~~~l~~~~~~i~~l~~~~----~~~v~~~~V~~~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 80 LIVRQMQGV-----YK-----------VKEPTLKEKFAKIAHIKMER----VPNLVFVHIPREKNARADELVNEAIDK 137 (140)
T ss_dssp HHHHHHTTS-----SC-----------CCCGGGHHHHHHHHHHHHHH----CTTCEEEECCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCC-----cc-----------cCCHHHHHHHHHHHHHhhcC----CCcEEEEEcCchhhHHHHHHHHHHHHh
Confidence 999999874 21 122 34455555 4 333 2479999999988 9999999999865
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.83 E-value=2.4e-20 Score=167.43 Aligned_cols=123 Identities=16% Similarity=0.113 Sum_probs=97.6
Q ss_pred EEEEEecccc-CCCCceEE-EEEEecCe-E----EeecC---ccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHH
Q psy7629 312 LHIYTDGSLI-NPEDGAGA-GIFCELFS-F----YKRLG---TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKA 381 (468)
Q Consensus 312 i~IYTDGS~~-~n~~~aG~-GVv~~~~~-~----~~~L~---~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqy 381 (468)
+.||||||+. +|++++|+ |+++.+++ . ...++ ..+||++||+.|++.||+.+.+. +..+|.|+|||++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~--g~~~v~i~tDS~~ 79 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL--GISSPIIKGDSQL 79 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH--TCCSCEEEESCHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc--CCCEEEEEeChHH
Confidence 5799999998 78888995 98765433 2 12223 36799999999999999999876 6689999999999
Q ss_pred HHHHhhcccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-HHHHHHHHHhhhcCC
Q psy7629 382 AIQSITNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-CLAEHLHRFGLKTSP 454 (468)
Q Consensus 382 ai~~I~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-E~AD~LAK~Aa~~~p 454 (468)
++++++.+ | +.+. ..++++++.+. +++.+ .|.|.|||||. +.||+||++|+....
T Consensus 80 vi~~i~~~-----w-----~~~~---~~~~~l~~~i~~l~~~~-----~v~~~~V~~~~N~~AD~LA~~a~~~~~ 136 (149)
T 2ehg_A 80 VIKQMNGE-----Y-----KVKA---KRIIPLYEKAIELKKKL-----NATLIWVPREENKEADRLSRVAYELVR 136 (149)
T ss_dssp HHHHHTTS-----S-----CCCC---TTHHHHHHHHHHHHHHH-----TCEEEECCGGGCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCc-----c-----ccCC---HHHHHHHHHHHHHHhcC-----CEEEEEcCCcccHHHHHHHHHHHHhhc
Confidence 99999875 2 2222 24788999888 65544 49999999999 999999999997643
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.73 E-value=4.9e-18 Score=182.94 Aligned_cols=114 Identities=22% Similarity=0.212 Sum_probs=89.9
Q ss_pred CcEEEEEeccccCCCCceEEEEEEecCe-EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHhhc
Q psy7629 310 DWLHIYTDGSLINPEDGAGAGIFCELFS-FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSITN 388 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~aG~GVv~~~~~-~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I~~ 388 (468)
+.++|||||||.+|++.+|+|+++..+. ....++ .+|||+||+.|++.||+. ....+.|+|||+||+++|++
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~-~~TNn~aEl~A~i~aL~~------~~~~v~I~tDS~~v~~~i~~ 507 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLE-QTTNQQAELEAFAMALTD------SGPKVNIIVDSQYVMGIVAS 507 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEES-SCCHHHHHHHHHHHHHHT------SCSEEEEEESCHHHHHHHHT
T ss_pred CceEEEEcccccCCCCCceEEEEEEeCCEeeccCC-CCCHHHHHHHHHHHHHHc------CCCeEEEEEehHHHHHHHhc
Confidence 4799999999998888899998875543 344444 459999999999999987 34789999999999999997
Q ss_pred ccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHhh
Q psy7629 389 CSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFGL 450 (468)
Q Consensus 389 ~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~Aa 450 (468)
|... .|+++++++. .+.. +..|.|.|||||+ |.||+||++|+
T Consensus 508 ~~~~----------------~~~~l~~~~~~~~~~----~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 508 QPTE----------------SESKIVNQIIEEMIK----KEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp CCSE----------------ESCHHHHHHHHHHHH----CSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred cccc----------------ccHHHHHHHHHHhcc----CCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 5422 2345666554 3222 3579999999998 99999999985
No 14
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.71 E-value=8.8e-18 Score=149.82 Aligned_cols=95 Identities=20% Similarity=0.094 Sum_probs=76.9
Q ss_pred cEEEEEeccccCCCCceEEEEEE-ecCe---EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHh
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFC-ELFS---FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSI 386 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~-~~~~---~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I 386 (468)
...|||||||.+|++++|+|.|+ .++. ..+.++ .+|||+||++|++.||+.+.+. +. .+.|+|||+||++-|
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~~-~tTNN~aEl~A~i~aL~~l~~~--~~-~v~i~tDSqyVi~wi 80 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER--NS-RKPIYSNSQTAIKWV 80 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEEE-EECHHHHHHHHHHHHHHHHHHT--TC-CCCEEESCHHHHHHH
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCCC-CCchHHHHHHHHHHHHHHHHhC--CC-CEEEEcchHHHHHHH
Confidence 56899999999999999995444 4333 234444 5699999999999999999874 22 389999999999855
Q ss_pred hcccCCchhhhccCcccCCCCcchHHHHHHHH
Q psy7629 387 TNCSEDPSIKHNKRLRNEGQGKKWQQILNTHD 418 (468)
Q Consensus 387 ~~~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~ 418 (468)
.+ ++|+++.++||+|++||+.++
T Consensus 81 ~~---------~~~kt~~~~~vkN~dLw~~ld 103 (134)
T 4htu_A 81 KD---------KKAKSTLVRNEETALIWKLVD 103 (134)
T ss_dssp HH---------TCCCCCCCCSSTTHHHHHHHH
T ss_pred Hc---------CCcccCCCCCccCHHHHHHHH
Confidence 53 368899999999999999987
No 15
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.70 E-value=6.2e-18 Score=182.18 Aligned_cols=113 Identities=20% Similarity=0.130 Sum_probs=86.8
Q ss_pred CcEEEEEeccccCCCCceEEEEEEecCe-EEeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHHhhc
Q psy7629 310 DWLHIYTDGSLINPEDGAGAGIFCELFS-FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQSITN 388 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~aG~GVv~~~~~-~~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~I~~ 388 (468)
+.++|||||||.+|++.+|+|+++.++. .....+ .+|||+||+.|++.||+.+ ..++.|+|||+||+++|+.
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~~-~~TNn~aEl~Ai~~aL~~~------~~~v~I~tDS~~vi~~i~~ 510 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNKGRQKVVPLT-NTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALGIIQA 510 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEEC-SCCHHHHHHHHHHHHHHHS------CSEEEEEECCHHHHHHHTT
T ss_pred CCEEEEEccCCCCCCCceEEEEEEECCcEEEecCC-CCCHHHHHHHHHHHHHHhC------CCcEEEEeChHHHHHHHhc
Confidence 4699999999998988899998875444 333333 4699999999999999997 3689999999999999998
Q ss_pred ccCCchhhhccCcccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh-----HHHHHHHHHh
Q psy7629 389 CSEDPSIKHNKRLRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD-----CLAEHLHRFG 449 (468)
Q Consensus 389 ~~~~~~Wk~ngW~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~-----E~AD~LAK~A 449 (468)
|... + |+++++++. .+.. ...|.|.|||||+ |.||+||++|
T Consensus 511 ~~~~-----------~-----~~~l~~~~~~~l~~----~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 511 QPDK-----------S-----ESELVNQIIEQLIK----KEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp CCSE-----------E-----SSHHHHHHHHHHHH----CSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred CCcc-----------C-----CHHHHHHHHHHHhc----CCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 6432 1 346666554 3322 2479999999998 9999999986
No 16
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.68 E-value=8.1e-18 Score=151.61 Aligned_cols=114 Identities=18% Similarity=0.072 Sum_probs=84.8
Q ss_pred CcEEEEEeccccCCCCceEEEEEEecCe-E---EeecCccccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCHHHHHH
Q psy7629 310 DWLHIYTDGSLINPEDGAGAGIFCELFS-F---YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIQS 385 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~aG~GVv~~~~~-~---~~~L~~~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSqyai~~ 385 (468)
+.+.|||||||.+|++++|+|+++..++ . +..++ .+|||+||++|++.||+.+.+. .. +|.|+|||+||++.
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~--~~-~v~i~tDS~~vi~w 85 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER--NS-RKPIYSNSQTAIKW 85 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHT--TC-CCCEEESCHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhC--CC-eEEEEEehHHHHHH
Confidence 3688999999999998899999885333 2 23333 4699999999999999999875 44 89999999999994
Q ss_pred hhcccCCchhhhccC-cccCCCCcchHHHHHHHH-hcCCCCCCCcceEEEEEcchh
Q psy7629 386 ITNCSEDPSIKHNKR-LRNEGQGKKWQQILNTHD-IIPNLPRKAAVAHFRLLTGHD 439 (468)
Q Consensus 386 I~~~~~~~~Wk~ngW-~ts~G~~V~n~~li~~I~-li~~l~~~g~~V~f~WVpgH~ 439 (468)
+. ++| +++.+++|+|++||+.|+ +..-+.. ..+....|+.|+
T Consensus 86 ~~----------~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~--~~~~~~~~kw~~ 129 (142)
T 1zbf_A 86 VK----------DKKAKSTLVRNEETALIWKLVDEAEEWLNT--HTYETPILKWQT 129 (142)
T ss_dssp HH----------HTCCCCCCCCSTTTHHHHHHHHHHHHHHHH--CCCCCCEEECCH
T ss_pred HH----------cCCccCCCCCCcccHHHHHHHHHHHHHHhh--CCCceeEEEecc
Confidence 44 344 566788999999999987 4322221 234444555554
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=80.18 E-value=0.67 Score=48.02 Aligned_cols=72 Identities=15% Similarity=0.055 Sum_probs=46.9
Q ss_pred cEEEEEeccccCCCCceEEEEEEecC----e----EEeecCc---cccchHHHHHHHHHHHHHHHhhcCCCceEEEEecC
Q psy7629 311 WLHIYTDGSLINPEDGAGAGIFCELF----S----FYKRLGT---FTTNFDGEIAAIKIALLQILNRTNQFERAVILSDS 379 (468)
Q Consensus 311 ~i~IYTDGS~~~n~~~aG~GVv~~~~----~----~~~~L~~---~~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDS 379 (468)
.+.+|||+|. .+ +| ||+.... . .+..+.+ ..+....|+.||+.|++...... ...+++|+||+
T Consensus 346 ~~~l~~DAS~--~~--~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl-~g~~~~v~tDh 419 (455)
T 1rw3_A 346 PFELFVDEKQ--GY--AK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLT-MGQPLVIKAPH 419 (455)
T ss_dssp TTSCEEEEEE--CS--SS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGG-CSSCEEEECSS
T ss_pred cEEEEEeccC--Cc--ce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHc-CCCcEEEEecC
Confidence 5789999986 22 22 3544321 1 1333332 33788999999999999987643 34689999999
Q ss_pred HHHHHHhhcc
Q psy7629 380 KAAIQSITNC 389 (468)
Q Consensus 380 qyai~~I~~~ 389 (468)
. ++.-+.+.
T Consensus 420 ~-~~~~l~~~ 428 (455)
T 1rw3_A 420 A-VEALVKQP 428 (455)
T ss_dssp C-TTTTSSST
T ss_pred h-HHHHhCCC
Confidence 6 55555443
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=48.81 E-value=34 Score=35.03 Aligned_cols=76 Identities=3% Similarity=-0.261 Sum_probs=44.9
Q ss_pred CcEEEEEeccccCCCCceEEEE-EEecCe--E-EeecCc--cccchHHHHHH-HHHHHHHHHhhc--CCCceEEEEecCH
Q psy7629 310 DWLHIYTDGSLINPEDGAGAGI-FCELFS--F-YKRLGT--FTTNFDGEIAA-IKIALLQILNRT--NQFERAVILSDSK 380 (468)
Q Consensus 310 ~~i~IYTDGS~~~n~~~aG~GV-v~~~~~--~-~~~L~~--~~Tn~~AEL~A-Il~ALe~a~~~~--~~~~~v~I~TDSq 380 (468)
..+.++||+|. .+ ++|. +...++ + +..+.. ..+.+.-|++| |+.||+...... .....++++||.+
T Consensus 323 ~~~~l~~das~--~g---~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 323 KDLIAEIQKQG--QG---QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp SCCEEEEEEEE--TT---EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCEEEEEecCC--CC---cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 36899999996 32 3443 333332 1 333332 22455667777 999999865431 1245678889998
Q ss_pred HHHHHhhccc
Q psy7629 381 AAIQSITNCS 390 (468)
Q Consensus 381 yai~~I~~~~ 390 (468)
...--...|.
T Consensus 398 ~~~~~~~~~q 407 (428)
T 2zd1_B 398 WETWWTEYWQ 407 (428)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhccc
Confidence 6654444443
No 19
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=22.74 E-value=1.3e+02 Score=26.22 Aligned_cols=53 Identities=19% Similarity=0.105 Sum_probs=35.1
Q ss_pred CceEEEEEEecCeEEeecCcc----ccchHHHHHHHHHHHHHHHhhcCCCceEEEEecCH
Q psy7629 325 DGAGAGIFCELFSFYKRLGTF----TTNFDGEIAAIKIALLQILNRTNQFERAVILSDSK 380 (468)
Q Consensus 325 ~~aG~GVv~~~~~~~~~L~~~----~Tn~~AEL~AIl~ALe~a~~~~~~~~~v~I~TDSq 380 (468)
.++|++++..++.+.....-. .-..-||..||..|... -. .....+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~--~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GY--KDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TC--CCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CC--CceEEEEEEeCCC
Confidence 348888887777754333221 12456999999999864 11 2467889998853
Done!