Query psy7630
Match_columns 160
No_of_seqs 101 out of 253
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 23:16:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.8 2.2E-19 7.5E-24 137.1 10.9 109 42-154 6-132 (154)
2 3u3g_D Ribonuclease H, RNAse H 99.8 1.3E-18 4.3E-23 127.8 10.1 108 43-154 3-122 (140)
3 3h08_A RNH (ribonuclease H); R 99.8 5.3E-19 1.8E-23 133.5 8.1 105 42-154 3-125 (146)
4 3p1g_A Xenotropic murine leuke 99.8 1.2E-18 4.1E-23 136.6 8.6 105 43-155 23-133 (165)
5 3hst_B Protein RV2228C/MT2287; 99.8 4.7E-18 1.6E-22 125.7 10.9 107 43-154 3-118 (141)
6 3qio_A GAG-POL polyprotein; RN 99.8 2.6E-18 9E-23 132.2 9.6 108 39-155 8-129 (150)
7 1jl1_A Ribonuclease HI; RNAse 99.7 2.3E-18 7.7E-23 132.2 7.6 104 43-154 4-124 (155)
8 2ehg_A Ribonuclease HI; RNAse 99.7 1E-17 3.4E-22 126.4 10.0 108 43-154 1-119 (149)
9 2e4l_A Ribonuclease HI, RNAse 99.7 5.1E-18 1.7E-22 130.8 8.3 104 43-154 6-126 (158)
10 1ril_A Ribonuclease H; hydrola 99.7 3.2E-18 1.1E-22 133.2 6.2 105 43-154 8-129 (166)
11 2kq2_A Ribonuclease H-related 99.7 1.3E-17 4.6E-22 127.2 6.7 103 42-154 5-118 (147)
12 2lsn_A Reverse transcriptase; 99.7 5.7E-17 1.9E-21 127.3 10.2 108 43-154 7-138 (165)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.6 9.6E-16 3.3E-20 137.8 10.0 102 42-154 435-538 (555)
14 2zd1_A Reverse transcriptase/r 99.6 8.9E-16 3E-20 138.1 9.6 102 42-154 438-541 (557)
15 4htu_A Ribonuclease H, RNAse H 99.6 1.8E-15 6.3E-20 116.1 4.4 75 43-122 5-84 (134)
16 1zbf_A Ribonuclease H-related 99.5 6.8E-15 2.3E-19 113.1 5.9 77 41-122 9-90 (142)
17 1rw3_A POL polyprotein; RNA an 93.7 0.023 7.7E-07 49.4 1.9 72 43-121 346-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 76.4 4.5 0.00015 34.9 6.0 78 41-122 322-407 (428)
19 2lsn_A Reverse transcriptase; 47.6 5.4 0.00018 30.4 0.8 21 77-97 49-69 (165)
20 2zd1_A Reverse transcriptase/r 39.6 93 0.0032 27.3 7.7 77 42-122 325-409 (557)
21 2job_A Antilipopolysaccharide 23.7 19 0.00065 26.1 0.3 6 149-154 53-58 (102)
22 2f6m_B Vacuolar protein sortin 22.7 53 0.0018 23.8 2.6 17 80-96 29-45 (109)
23 2p22_B Vacuolar protein sortin 21.6 57 0.002 24.0 2.6 17 80-96 38-54 (118)
24 3ks7_A Putative putative pngas 21.0 24 0.00081 31.1 0.4 9 147-155 343-351 (397)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.80 E-value=2.2e-19 Score=137.10 Aligned_cols=109 Identities=22% Similarity=0.179 Sum_probs=80.9
Q ss_pred CeEEEEeeCCCC-CCCCC--eEEEEEEeccc---ceeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHH
Q psy7630 42 DWLHIYTDGSLI-NPEDG--AGAGIFCELFS---FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAI 115 (160)
Q Consensus 42 ~~i~IYTDGSk~-ng~~G--aG~gi~~~~~~---~~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI 115 (160)
+.+.||||||+. |+++| +|+|+++.... .+.++++.+||++||+.|++.||+.+.+ ....++.|+|||++++
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~--~~~~~v~i~tDS~~vi 83 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKT--QNINKLVLYTNSMFTI 83 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHH--TTCCEEEEEESCHHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHh--CCCceEEEEECcHHHH
Confidence 579999999995 44443 78898875422 3556776799999999999999999964 2346899999999999
Q ss_pred HhhccC---------CCCCc---hhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 116 HPMNSV---------HLNSC---PALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 116 ~aI~~~---------~~~~~---~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
++|++| ..+.. .-.+.-++|..++.. .+|+|.||||.
T Consensus 84 ~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~--~~v~~~~V~~H 132 (154)
T 2qkb_A 84 NGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQG--MDIQWMHVPGH 132 (154)
T ss_dssp HHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTT--CEEEEEECCTT
T ss_pred hhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcC--CceEEEEccCC
Confidence 999874 22221 112345566666654 36999999984
No 2
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.77 E-value=1.3e-18 Score=127.84 Aligned_cols=108 Identities=21% Similarity=0.107 Sum_probs=77.2
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEeccc-c-----eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCC----cEEEEcCc
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFS-F-----YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFE----RAVILSDS 111 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~-~-----~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~----~i~I~SDS 111 (160)
.+.||||||+. +++| +|+|+++...+ . +..+ +.+||++||+.|++.||+++.+. ... ++.|+|||
T Consensus 3 ~~~iy~DGs~~-~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~--~~~~~~~~v~i~tDS 78 (140)
T 3u3g_D 3 KIIIYTDGGAR-GNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMF--GDKLVDMEVEVRMDS 78 (140)
T ss_dssp EEEEEEEEEES-STTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGG--GGGGTTCEEEEEESC
T ss_pred eEEEEEecCCC-CCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHc--CCCCCCceEEEEeCh
Confidence 58999999994 5566 78898885422 1 2223 34899999999999999999542 234 89999999
Q ss_pred HHHHHhhccCCC-CCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 112 KAAIHPMNSVHL-NSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 112 qsaI~aI~~~~~-~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
+++++.|+++.. .........+.|..++.+...+|+|.|||+.
T Consensus 79 ~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~ 122 (140)
T 3u3g_D 79 ELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPRE 122 (140)
T ss_dssp HHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGG
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCch
Confidence 999999988532 2222233445566551334469999999953
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.77 E-value=5.3e-19 Score=133.50 Aligned_cols=105 Identities=21% Similarity=0.133 Sum_probs=75.4
Q ss_pred CeEEEEeeCCCCCCCCC-eEEEEEEecccc----eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Q psy7630 42 DWLHIYTDGSLINPEDG-AGAGIFCELFSF----YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIH 116 (160)
Q Consensus 42 ~~i~IYTDGSk~ng~~G-aG~gi~~~~~~~----~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~ 116 (160)
+.+.||||||+. +++| +|+|+++...+. +..+ +.+||++||+.|++.||+.+.+ ..++.|+|||+++++
T Consensus 3 ~~i~iytDGs~~-~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~----~~~v~I~tDS~~vi~ 76 (146)
T 3h08_A 3 KTITIYTDGAAS-GNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE----PARVQLYSDSAYLVN 76 (146)
T ss_dssp CEEEEEEEEEES-STTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS----CCEEEEEESCHHHHH
T ss_pred ceEEEEEecCCC-CCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc----cCcEEEEeChHHHHH
Confidence 369999999994 5556 788988755432 2233 3589999999999999999842 468999999999999
Q ss_pred hhcc-C---------CCCCc---hhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 117 PMNS-V---------HLNSC---PALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 117 aI~~-~---------~~~~~---~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
+|++ | ..+.. .-.+.-+.|..++... +|+|.||||-
T Consensus 77 ~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~--~v~~~~V~gH 125 (146)
T 3h08_A 77 AMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH--RVTFHKVKGH 125 (146)
T ss_dssp HHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS--EEEEEECCC-
T ss_pred HHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC--ceEEEEcCCc
Confidence 9988 3 11111 1134555666666543 7999999975
No 4
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.76 E-value=1.2e-18 Score=136.62 Aligned_cols=105 Identities=21% Similarity=0.221 Sum_probs=72.8
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEecccc---eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHhh
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFSF---YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPM 118 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~~---~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~aI 118 (160)
.+.||||||+. +++| +|+|+++...+. ...++..+|||+||+.|++.||+++ + ..++.|+|||++++++|
T Consensus 23 ~i~iytDGs~~-~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~----~~~v~I~tDS~~vi~~i 96 (165)
T 3p1g_A 23 DYTWYTDGSSF-LQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E----GKKLNVYTDSRYAFATA 96 (165)
T ss_dssp SEEEEEEEEEE-EETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B----TSEEEEEECCHHHHHHH
T ss_pred CEEEEEEcccC-CCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c----CceEEEEEchHHHHhhh
Confidence 48999999994 5567 677776644332 2245677999999999999999988 2 46899999999999999
Q ss_pred ccCCCCCchhhhhhhHHHHHHhh--hccceeeccccCcc
Q psy7630 119 NSVHLNSCPALEASNDIVGTLCS--VLNKIKTNCCPYSR 155 (160)
Q Consensus 119 ~~~~~~~~~~~~~~~~I~~~~~~--~~~~~~~~~~p~~~ 155 (160)
|.............+..++.. ...+|+|.||||-.
T Consensus 97 --w~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~ 133 (165)
T 3p1g_A 97 --HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQ 133 (165)
T ss_dssp --HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSC
T ss_pred --hcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCC
Confidence 422222111111113333222 45789999999854
No 5
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.76 E-value=4.7e-18 Score=125.71 Aligned_cols=107 Identities=19% Similarity=0.147 Sum_probs=76.8
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEeccc-------ceeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHH
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFS-------FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAA 114 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~-------~~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsa 114 (160)
.+.||||||+ .+++| +|+|+++...+ ....+ +.+||++||+.|++.||+++.+. ...++.|+|||+++
T Consensus 3 ~~~iy~DGs~-~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~--~~~~v~i~tDS~~v 78 (141)
T 3hst_B 3 KVVIEADGGS-RGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKL--GATEAAVLMDSKLV 78 (141)
T ss_dssp EEEEEEEEEE-SSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHH--TCSEEEEEESCHHH
T ss_pred EEEEEEecCC-CCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHC--CCceEEEEeChHHH
Confidence 5899999999 46667 78888775432 12223 36899999999999999999653 24689999999999
Q ss_pred HHhhcc-CCCCCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 115 IHPMNS-VHLNSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 115 I~aI~~-~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
++.|++ |..........-+.|..++. ...+|+|.|||+.
T Consensus 79 v~~i~~~~~~~~~~l~~~~~~i~~l~~-~~~~v~~~~V~~~ 118 (141)
T 3hst_B 79 VEQMSGRWKVKHPDLLKLYVQAQALAS-QFRRINYEWVPRA 118 (141)
T ss_dssp HHHHTTSSCCCSHHHHHHHHHHHHHHT-TSSEEEEEECCGG
T ss_pred HHHHhCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEcCCc
Confidence 999987 33333222233345555543 3468999999963
No 6
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.76 E-value=2.6e-18 Score=132.24 Aligned_cols=108 Identities=24% Similarity=0.174 Sum_probs=74.5
Q ss_pred CCCCeEEEEeeCCCCCCCCC-eEEEEEEeccc-ceeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHH
Q psy7630 39 PSDDWLHIYTDGSLINPEDG-AGAGIFCELFS-FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIH 116 (160)
Q Consensus 39 ~~~~~i~IYTDGSk~ng~~G-aG~gi~~~~~~-~~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~ 116 (160)
+..+.+.||||||+. +++| .|+|+++.... ....+ +.+||++||+.|++.||+.+ ..++.|+|||+++++
T Consensus 8 P~~~~~~iytDGs~~-~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~------~~~v~i~tDS~~v~~ 79 (150)
T 3qio_A 8 PIVGAETFYVDGAAN-RETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALG 79 (150)
T ss_dssp CCTTCEEEEEEEEEC-TTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS------CSEEEEEESCHHHHH
T ss_pred CCCCCEEEEEccCCC-CCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC------CCcEEEEeCcHHHHH
Confidence 334579999999994 5555 57787764432 23344 45999999999999999975 368999999999999
Q ss_pred hhccCC---------CCCc---hhhhhhhHHHHHHhhhccceeeccccCcc
Q psy7630 117 PMNSVH---------LNSC---PALEASNDIVGTLCSVLNKIKTNCCPYSR 155 (160)
Q Consensus 117 aI~~~~---------~~~~---~~~~~~~~I~~~~~~~~~~~~~~~~p~~~ 155 (160)
+|++|- .... .-.+.-+.|...+. ...+|+|.||||..
T Consensus 80 ~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~-~~~~v~~~wV~gH~ 129 (150)
T 3qio_A 80 IITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLI-KKEKVYLAWVPAHK 129 (150)
T ss_dssp HHHHHHHHHCC------------CHHHHHHHHHHHT-TCSEEEEEECCTTS
T ss_pred HHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHh-hcCceEEEEccCcC
Confidence 999861 1111 11122333333332 35789999999964
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.74 E-value=2.3e-18 Score=132.19 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=75.3
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEecccc----eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHh
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFSF----YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHP 117 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~~----~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~a 117 (160)
.+.||||||+. +++| +|+|+++...+. +..+ +.+||++||+.|++.||+.+.+ ..++.|+|||++++++
T Consensus 4 ~~~iytDGs~~-~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~----~~~v~I~tDS~~vi~~ 77 (155)
T 1jl1_A 4 QVEIFTAGSAL-GNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE----HAEVILSTDSQYVRQG 77 (155)
T ss_dssp CEEEEEEEEES-STTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS----CCEEEEEECCHHHHHH
T ss_pred eEEEEEccccC-CCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc----CCcEEEEeCHHHHHHH
Confidence 58999999994 5566 788888754332 2223 3589999999999999999842 3689999999999999
Q ss_pred hccC---------CCCCch---hhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 118 MNSV---------HLNSCP---ALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 118 I~~~---------~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
|++| ..+... -.+.-+.|..++.. .+|+|.||||-
T Consensus 78 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH 124 (155)
T 1jl1_A 78 ITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQ--HQIKWEWVKGH 124 (155)
T ss_dssp HHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTT--CEEEEEECCSS
T ss_pred HHHHHHHHhhcccccccCCccCCHHHHHHHHHHHcc--CceEEEEcCCC
Confidence 9973 222111 12344556666643 48999999975
No 8
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.74 E-value=1e-17 Score=126.39 Aligned_cols=108 Identities=16% Similarity=0.102 Sum_probs=79.3
Q ss_pred eEEEEeeCCCCCCCCC-eEE-EEEEecccce---e--ecC---CCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcH
Q psy7630 43 WLHIYTDGSLINPEDG-AGA-GIFCELFSFY---K--RLG---TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSK 112 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~-gi~~~~~~~~---~--~L~---~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSq 112 (160)
++.||||||+..+++| +|+ |+++...+.. + .++ +.+||++||+.|++.||+.+.+. ...++.|+|||+
T Consensus 1 m~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~--g~~~v~i~tDS~ 78 (149)
T 2ehg_A 1 MIIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRL--GISSPIIKGDSQ 78 (149)
T ss_dssp CCEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHH--TCCSCEEEESCH
T ss_pred CEEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHc--CCCEEEEEeChH
Confidence 3689999999424555 775 8877553321 1 222 37899999999999999999653 245899999999
Q ss_pred HHHHhhccC-CCCCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 113 AAIHPMNSV-HLNSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 113 saI~aI~~~-~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
++++.|+++ ..+...-...-+.|..++... +++|.|||+.
T Consensus 79 ~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~--~v~~~~V~~~ 119 (149)
T 2ehg_A 79 LVIKQMNGEYKVKAKRIIPLYEKAIELKKKL--NATLIWVPRE 119 (149)
T ss_dssp HHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH--TCEEEECCGG
T ss_pred HHHHHHhCccccCCHHHHHHHHHHHHHHhcC--CEEEEEcCCc
Confidence 999999886 334344445566777777655 6999999984
No 9
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.73 E-value=5.1e-18 Score=130.79 Aligned_cols=104 Identities=20% Similarity=0.192 Sum_probs=75.0
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEecccc----eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHh
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFSF----YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHP 117 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~~----~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~a 117 (160)
.+.||||||+. +++| +|+|+++...+. +..+ +.+||++||+.|++.||+.+.+ ..++.|+|||++++++
T Consensus 6 ~i~iytDGs~~-~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~----~~~v~I~tDS~~vi~~ 79 (158)
T 2e4l_A 6 LIHIFTDGSCL-GNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE----PCKIILTSDSQYMRQG 79 (158)
T ss_dssp EEEEEEEEEES-SSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS----CCEEEEEECCHHHHHH
T ss_pred eEEEEEccccc-CCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc----CCeEEEEeCHHHHHHH
Confidence 58999999994 5556 788988754332 2233 3489999999999999998832 2689999999999999
Q ss_pred hcc---------CCCCCc--h-hhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 118 MNS---------VHLNSC--P-ALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 118 I~~---------~~~~~~--~-~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
|++ |..... . -.+.-+.|..++.. .+|+|.||||-
T Consensus 80 i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH 126 (158)
T 2e4l_A 80 IMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQL--HQIDWRWVKGH 126 (158)
T ss_dssp HHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTT--SEEEEEECCTT
T ss_pred HHHHHHHHHHccccccCCCcccCHHHHHHHHHHHcc--CcEEEEEccCC
Confidence 988 322211 1 11334566666654 48999999975
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.73 E-value=3.2e-18 Score=133.21 Aligned_cols=105 Identities=14% Similarity=0.145 Sum_probs=75.5
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEecccceeecC---CCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHhh
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFSFYKRLG---TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPM 118 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~~~~~L~---~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~aI 118 (160)
.+.||||||+. +++| +|+|+++...+....+. +.+||++||+.|++.||+.+.+ ..++.|+|||++++++|
T Consensus 8 ~i~iytDGs~~-~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~----~~~v~I~tDS~~vi~~i 82 (166)
T 1ril_A 8 RVALFTDGACL-GNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKE----PCEVDLYTDSHYLKKAF 82 (166)
T ss_dssp CCCEEEEEEES-STTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCS----CCEEEEECCCHHHHHHH
T ss_pred cEEEEECcccc-CCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhcc----CCeEEEEeChHHHHHHH
Confidence 58899999994 5556 78898885433211111 3589999999999999998732 25899999999999999
Q ss_pred cc----------CCCCCch---hhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 119 NS----------VHLNSCP---ALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 119 ~~----------~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
++ |..+... -.+.-+.|..++.. .+|+|.||||-
T Consensus 83 ~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~--~~v~~~wV~gH 129 (166)
T 1ril_A 83 TEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAP--HRVRFHFVKGH 129 (166)
T ss_dssp HSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTT--SEEECCCCCGG
T ss_pred hhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhc--CeEEEEEeeCC
Confidence 98 4332221 12345566666654 48999999975
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.70 E-value=1.3e-17 Score=127.22 Aligned_cols=103 Identities=17% Similarity=0.023 Sum_probs=71.5
Q ss_pred CeEEEEeeCCCCCCCCC-eEEEEEEecccc----ee-ec--CC--CcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCc
Q psy7630 42 DWLHIYTDGSLINPEDG-AGAGIFCELFSF----YK-RL--GT--FTTNFDGEIAAIKIALLQILNRTNQFERAVILSDS 111 (160)
Q Consensus 42 ~~i~IYTDGSk~ng~~G-aG~gi~~~~~~~----~~-~L--~~--~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDS 111 (160)
+.+.||||||+.+ | +|+|+++...+. +. .+ +. .+|||+||+.|++.||+++++. . . ++.|+|||
T Consensus 5 ~~i~iytDGs~~~---g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~-~-~-~v~I~tDS 78 (147)
T 2kq2_A 5 TEYDVYTDGSYVN---GQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL-G-V-KIRILHDY 78 (147)
T ss_dssp SCCEEECCCCCBT---TBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH-T-C-CCCBSSCC
T ss_pred CeEEEEECCCCCC---CCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC-C-C-eEEEEECc
Confidence 4689999999954 4 788888754332 22 22 22 3699999999999999988654 2 3 89999999
Q ss_pred HHHHHhhcc-CCCCCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 112 KAAIHPMNS-VHLNSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 112 qsaI~aI~~-~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
+.+.+-+.+ |..+.. ..+....++.....+|+|.||||-
T Consensus 79 ~~i~~w~~~~w~~~~~----~~~~~~~l~~~l~~~v~~~wV~gH 118 (147)
T 2kq2_A 79 AGIAFWATGEWKAKNE----FTQAYAKLMNQYRGIYSFEKVKAH 118 (147)
T ss_dssp STHHHHTTSSSSCCHH----HHHHHHCGGGGGSTTCCBCCCCCC
T ss_pred HHHHHHHhCCCccCCc----chHHHHHHHHHhcCCeeEEEecCc
Confidence 987776643 333322 233444445554559999999984
No 12
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.70 E-value=5.7e-17 Score=127.31 Aligned_cols=108 Identities=23% Similarity=0.178 Sum_probs=71.4
Q ss_pred eEEEEeeCCCC-CCCCC----eEEEEEEeccc------ceeecC-CCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcC
Q psy7630 43 WLHIYTDGSLI-NPEDG----AGAGIFCELFS------FYKRLG-TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSD 110 (160)
Q Consensus 43 ~i~IYTDGSk~-ng~~G----aG~gi~~~~~~------~~~~L~-~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SD 110 (160)
.+.|||||||. ||.+. +|+||++...+ ..+..+ +..++++||+.|+..||+.+++. ..++.|+||
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~---~~~v~I~TD 83 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI---PGPVLVITD 83 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS---SSCEEEEES
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC---CCeEEEEeC
Confidence 48899999996 54431 78999875332 122322 45778888888888888877542 357999999
Q ss_pred cHHHHHhhccC---------CCCCchh---hhhhhHHHHHHhhhccceeeccccCc
Q psy7630 111 SKAAIHPMNSV---------HLNSCPA---LEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 111 SqsaI~aI~~~---------~~~~~~~---~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
|+|++++|+.| ......+ .+.-+.+..+++ ..++|+|.||||-
T Consensus 84 S~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~-~~~~v~~~~VkgH 138 (165)
T 2lsn_A 84 SFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLS-MKPDITIQHEKGH 138 (165)
T ss_dssp CHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHH-HCTTCEEEECCSS
T ss_pred hHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHh-CCCCEEEEEEeCC
Confidence 99999999864 2221111 122233444442 3468999999985
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.62 E-value=9.6e-16 Score=137.78 Aligned_cols=102 Identities=25% Similarity=0.239 Sum_probs=75.9
Q ss_pred CeEEEEeeCCCCCCCCC-eEEEEEEecccc-eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHhhc
Q psy7630 42 DWLHIYTDGSLINPEDG-AGAGIFCELFSF-YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPMN 119 (160)
Q Consensus 42 ~~i~IYTDGSk~ng~~G-aG~gi~~~~~~~-~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~aI~ 119 (160)
+.+.||||||+ ++++| +|+|+++...+. ...+ ..+|||+||+.|++.||+. ...++.|+|||++++++|+
T Consensus 435 ~~~~iytDGs~-~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~------~~~~v~I~tDS~~v~~~i~ 506 (555)
T 1mu2_A 435 GAETFYTDGSC-NRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD------SGPKVNIIVDSQYVMGIVA 506 (555)
T ss_dssp TCEEEEEEEEE-CTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT------SCSEEEEEESCHHHHHHHH
T ss_pred CceEEEEcccc-cCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc------CCCeEEEEEehHHHHHHHh
Confidence 46999999999 45555 577877744332 3333 3589999999999999997 2468999999999999999
Q ss_pred cCCCCCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 120 SVHLNSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 120 ~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
+|...... ..-+.+..++.. ..+|.+.||||-
T Consensus 507 ~~~~~~~~--~l~~~~~~~~~~-~~~v~~~wV~~H 538 (555)
T 1mu2_A 507 SQPTESES--KIVNQIIEEMIK-KEAIYVAWVPAH 538 (555)
T ss_dssp TCCSEESC--HHHHHHHHHHHH-CSEEEEEECCSS
T ss_pred cccccccH--HHHHHHHHHhcc-CCcEEEEEEECC
Confidence 98654443 344455555444 468999999994
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.62 E-value=8.9e-16 Score=138.05 Aligned_cols=102 Identities=27% Similarity=0.207 Sum_probs=75.6
Q ss_pred CeEEEEeeCCCCCCCCC-eEEEEEEeccc-ceeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHhhc
Q psy7630 42 DWLHIYTDGSLINPEDG-AGAGIFCELFS-FYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPMN 119 (160)
Q Consensus 42 ~~i~IYTDGSk~ng~~G-aG~gi~~~~~~-~~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~aI~ 119 (160)
+.+.||||||+ ++++| +|+|+++.... ..+.+ ..+|||+||+.|++.||+.+ ..++.|+|||++++++|+
T Consensus 438 ~~~~iytDGs~-~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~------~~~v~I~tDS~~vi~~i~ 509 (557)
T 2zd1_A 438 GAETFYVDGAA-NRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS------GLEVNIVTDSQYALGIIQ 509 (557)
T ss_dssp TSCEEEEEEEE-CTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS------CSEEEEEECCHHHHHHHT
T ss_pred CCEEEEEccCC-CCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC------CCcEEEEeChHHHHHHHh
Confidence 46899999999 45555 57777764322 22333 45899999999999999987 358999999999999999
Q ss_pred cCCCCCchhhhhhhHHHHHHhhhccceeeccccCc
Q psy7630 120 SVHLNSCPALEASNDIVGTLCSVLNKIKTNCCPYS 154 (160)
Q Consensus 120 ~~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~p~~ 154 (160)
+|...+.. +.-+.+...+.. ..+|++.||||.
T Consensus 510 ~~~~~~~~--~l~~~~~~~l~~-~~~v~~~wV~~H 541 (557)
T 2zd1_A 510 AQPDKSES--ELVNQIIEQLIK-KEKVYLAWVPAH 541 (557)
T ss_dssp TCCSEESS--HHHHHHHHHHHH-CSEEEEEECCSS
T ss_pred cCCccCCH--HHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 98654333 334455544544 358999999994
No 15
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.55 E-value=1.8e-15 Score=116.06 Aligned_cols=75 Identities=23% Similarity=0.158 Sum_probs=56.6
Q ss_pred eEEEEeeCCCCCCCCC-eEEEEEEecccc----eeecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHh
Q psy7630 43 WLHIYTDGSLINPEDG-AGAGIFCELFSF----YKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHP 117 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~G-aG~gi~~~~~~~----~~~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI~a 117 (160)
...||||||| .|+|| +|+|.++...+. ...+ +.+|||+||+.|++.||+.+.+. ..++.|+||||++++-
T Consensus 5 ~~~iytDGac-~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~---~~~v~i~tDSqyVi~w 79 (134)
T 4htu_A 5 WESLSVDVGS-QGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKER---NSRKPIYSNSQTAIKW 79 (134)
T ss_dssp SSSEEEEEEE-ETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHT---TCCCCEEESCHHHHHH
T ss_pred ceEEEEeecc-CCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhC---CCCEEEEcchHHHHHH
Confidence 5789999999 47888 777454433332 2222 26899999999999999999642 2248999999999999
Q ss_pred hccCC
Q psy7630 118 MNSVH 122 (160)
Q Consensus 118 I~~~~ 122 (160)
|.++.
T Consensus 80 i~~~~ 84 (134)
T 4htu_A 80 VKDKK 84 (134)
T ss_dssp HHHTC
T ss_pred HHcCC
Confidence 98753
No 16
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.53 E-value=6.8e-15 Score=113.14 Aligned_cols=77 Identities=22% Similarity=0.107 Sum_probs=60.1
Q ss_pred CCeEEEEeeCCCCCCCCC-eEEEEEEeccccee----ecCCCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHH
Q psy7630 41 DDWLHIYTDGSLINPEDG-AGAGIFCELFSFYK----RLGTFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAI 115 (160)
Q Consensus 41 ~~~i~IYTDGSk~ng~~G-aG~gi~~~~~~~~~----~L~~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDSqsaI 115 (160)
.+.+.||||||+ .|++| +|+|+++...+... .++ .+|||+||+.|++.||+.+.+. .. ++.|+|||++++
T Consensus 9 ~~~~~iy~DGa~-~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~--~~-~v~i~tDS~~vi 83 (142)
T 1zbf_A 9 IIWESLSVDVGS-QGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKER--NS-RKPIYSNSQTAI 83 (142)
T ss_dssp CCSSSEEEEEEE-CSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHT--TC-CCCEEESCHHHH
T ss_pred CCeEEEEEeecc-CCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhC--CC-eEEEEEehHHHH
Confidence 347899999999 46778 78999885333221 222 5899999999999999999642 22 899999999999
Q ss_pred HhhccCC
Q psy7630 116 HPMNSVH 122 (160)
Q Consensus 116 ~aI~~~~ 122 (160)
+.+++..
T Consensus 84 ~w~~~~~ 90 (142)
T 1zbf_A 84 KWVKDKK 90 (142)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9998764
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=93.75 E-value=0.023 Score=49.37 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=47.0
Q ss_pred eEEEEeeCCCCCCCCCeEEEEEEeccc--------ceeecC---CCcchHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCc
Q psy7630 43 WLHIYTDGSLINPEDGAGAGIFCELFS--------FYKRLG---TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDS 111 (160)
Q Consensus 43 ~i~IYTDGSk~ng~~GaG~gi~~~~~~--------~~~~L~---~~~Sn~~AEl~AI~~AL~~i~~~~~~~~~i~I~SDS 111 (160)
.+.+|||+|. +. .| ||...... .+.++. ...+.+..|+.||..|++...... ...++.|+||+
T Consensus 346 ~~~l~~DAS~--~~--~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl-~g~~~~v~tDh 419 (455)
T 1rw3_A 346 PFELFVDEKQ--GY--AK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLT-MGQPLVIKAPH 419 (455)
T ss_dssp TTSCEEEEEE--CS--SS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGG-CSSCEEEECSS
T ss_pred cEEEEEeccC--Cc--ce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHc-CCCcEEEEecC
Confidence 4789999987 22 22 24332211 122333 245788999999999999884333 34689999999
Q ss_pred HHHHHhhccC
Q psy7630 112 KAAIHPMNSV 121 (160)
Q Consensus 112 qsaI~aI~~~ 121 (160)
. ++.-+.+.
T Consensus 420 ~-~~~~l~~~ 428 (455)
T 1rw3_A 420 A-VEALVKQP 428 (455)
T ss_dssp C-TTTTSSST
T ss_pred h-HHHHhCCC
Confidence 7 66666554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=76.37 E-value=4.5 Score=34.87 Aligned_cols=78 Identities=4% Similarity=-0.305 Sum_probs=44.6
Q ss_pred CCeEEEEeeCCCCCCCCCeEEEEEEeccc-----ceeecCCCcchHHHHHHH-HHHHHHHHHhhc--CCCCcEEEEcCcH
Q psy7630 41 DDWLHIYTDGSLINPEDGAGAGIFCELFS-----FYKRLGTFTTNFDGEIAA-IKIALLQILNRT--NQFERAVILSDSK 112 (160)
Q Consensus 41 ~~~i~IYTDGSk~ng~~GaG~gi~~~~~~-----~~~~L~~~~Sn~~AEl~A-I~~AL~~i~~~~--~~~~~i~I~SDSq 112 (160)
+..+.+|||+|. .|+.+++.....+ ..+.-....+.+.-|+.| |+.||+...-.. .....++++||.+
T Consensus 322 ~~~~~l~~das~----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 322 SKDLIAEIQKQG----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp TSCCEEEEEEEE----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCCEEEEEecCC----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 345899999997 2332333332211 122312234456677777 999998542111 2234578899998
Q ss_pred HHHHhhccCC
Q psy7630 113 AAIHPMNSVH 122 (160)
Q Consensus 113 saI~aI~~~~ 122 (160)
...--...|.
T Consensus 398 ~~~~~~~~~q 407 (428)
T 2zd1_B 398 WETWWTEYWQ 407 (428)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhccc
Confidence 8665555543
No 19
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=47.55 E-value=5.4 Score=30.36 Aligned_cols=21 Identities=10% Similarity=-0.189 Sum_probs=18.7
Q ss_pred CcchHHHHHHHHHHHHHHHHh
Q psy7630 77 FTTNFDGEIAAIKIALLQILN 97 (160)
Q Consensus 77 ~~Sn~~AEl~AI~~AL~~i~~ 97 (160)
.+|++++|+.|.+.||+.+++
T Consensus 49 ~~tnn~te~~Aei~Al~~al~ 69 (165)
T 2lsn_A 49 IPLGNHTAQMAEIAAVEFACK 69 (165)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHH
Confidence 468999999999999999864
No 20
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=39.57 E-value=93 Score=27.31 Aligned_cols=77 Identities=4% Similarity=-0.282 Sum_probs=43.1
Q ss_pred CeEEEEeeCCCCCCCCCeEEEEEEeccc-----ceeecCCCcchHHHHHHH-HHHHHHHHHhhc-CCCCcEEE-EcCcHH
Q psy7630 42 DWLHIYTDGSLINPEDGAGAGIFCELFS-----FYKRLGTFTTNFDGEIAA-IKIALLQILNRT-NQFERAVI-LSDSKA 113 (160)
Q Consensus 42 ~~i~IYTDGSk~ng~~GaG~gi~~~~~~-----~~~~L~~~~Sn~~AEl~A-I~~AL~~i~~~~-~~~~~i~I-~SDSqs 113 (160)
..+.+|||+|. .|+-+++...... ..+.-....+.+.-|+.| ++.||+...-.. .....+.| ++|++.
T Consensus 325 ~~~~l~~das~----~g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 325 KDLIAEIQKQG----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp SCCEEEEEEEE----TTEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CCEEEEEecCC----CCcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 35899999997 2331223332221 122223345567789999 999987532111 12235666 899987
Q ss_pred HHHhhccCC
Q psy7630 114 AIHPMNSVH 122 (160)
Q Consensus 114 aI~aI~~~~ 122 (160)
...-...|.
T Consensus 401 ~~~~~~~~~ 409 (557)
T 2zd1_A 401 ETWWTEYWQ 409 (557)
T ss_dssp HHHHHHCSS
T ss_pred HHHhhhchh
Confidence 665555543
No 21
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=23.67 E-value=19 Score=26.05 Aligned_cols=6 Identities=33% Similarity=0.478 Sum_probs=5.0
Q ss_pred ccccCc
Q psy7630 149 NCCPYS 154 (160)
Q Consensus 149 ~~~p~~ 154 (160)
|||||-
T Consensus 53 mWCPgW 58 (102)
T 2job_A 53 MWCPGW 58 (102)
T ss_dssp EECBTT
T ss_pred EecCCc
Confidence 899984
No 22
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=22.66 E-value=53 Score=23.76 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy7630 80 NFDGEIAAIKIALLQIL 96 (160)
Q Consensus 80 n~~AEl~AI~~AL~~i~ 96 (160)
-+-||+.||+.||+.+-
T Consensus 29 e~LAelYSII~tle~LE 45 (109)
T 2f6m_B 29 ETLSEIYSIVITLDHVE 45 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 56799999999999883
No 23
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=21.59 E-value=57 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy7630 80 NFDGEIAAIKIALLQIL 96 (160)
Q Consensus 80 n~~AEl~AI~~AL~~i~ 96 (160)
-+-||+.||+.||+.+-
T Consensus 38 e~LAeLYSII~tle~LE 54 (118)
T 2p22_B 38 ETLSEIYSIVITLDHVE 54 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 56799999999999984
No 24
>3ks7_A Putative putative pngase F; putative peptide:N-glycosidase F (pngase F), structural GENO joint center for structural genomics; 2.30A {Bacteroides fragilis nctc 9343}
Probab=21.00 E-value=24 Score=31.09 Aligned_cols=9 Identities=44% Similarity=0.888 Sum_probs=6.9
Q ss_pred eeccccCcc
Q psy7630 147 KTNCCPYSR 155 (160)
Q Consensus 147 ~~~~~p~~~ 155 (160)
.-|||||+-
T Consensus 343 RsNWCPG~~ 351 (397)
T 3ks7_A 343 RSNWCPGSD 351 (397)
T ss_dssp BSSCCTTCE
T ss_pred cccCCCCcc
Confidence 458999974
Done!