RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7630
         (160 letters)



>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 1
           [TaxId: 11676]}
          Length = 110

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 6/91 (6%)

Query: 39  PSDDWLHIYTDGSLINPEDGAGAGIFCELFSFYKRLGTFTTNFDGEIAAIKIALLQILNR 98
           P       Y DG+         AG             T TTN   E+ AI +AL      
Sbjct: 4   PIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSG-- 61

Query: 99  TNQFERAVILSDSKAAIHPMNSVHLNSCPAL 129
                   I++DS+ A+  + +    S   L
Sbjct: 62  ----LEVNIVTDSQYALGIIQAQPDQSESEL 88


>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 6/89 (6%)

Query: 39  PSDDWLHIYTDGSLINPEDGAGAGIFCELFSFYKRLGTFTTNFDGEIAAIKIALLQILNR 98
           P       YTDGS         AG   +      +    TTN   E+ A        +  
Sbjct: 3   PIPGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKLEQTTNQQAELEAF------AMAL 56

Query: 99  TNQFERAVILSDSKAAIHPMNSVHLNSCP 127
           T+   +  I+ DS+  +  + S    S  
Sbjct: 57  TDSGPKVNIIVDSQYVMGIVASQPTESES 85


>d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin
           (erythrocruorin), subunit III (globin C) {Common
           earthworm (Lumbricus terrestris) [TaxId: 6398]}
          Length = 149

 Score = 25.5 bits (55), Expect = 2.1
 Identities = 14/78 (17%), Positives = 23/78 (29%)

Query: 41  DDWLHIYTDGSLINPEDGAGAGIFCELFSFYKRLGTFTTNFDGEIAAIKIALLQILNRTN 100
             W  ++ D      + G G  +  +L      +       D E A         L   N
Sbjct: 15  KQWDILWRDTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVDIEHAEGPKFSAHALRILN 74

Query: 101 QFERAVILSDSKAAIHPM 118
             + A+ L D   A+   
Sbjct: 75  GLDLAINLLDDPPALDAA 92


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
          [TaxId: 274]}
          Length = 147

 Score = 25.3 bits (54), Expect = 2.9
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 45 HIYTDGS-LINPEDGAGAGIF 64
           ++TDG+ L NP  G  A + 
Sbjct: 5  ALFTDGACLGNPGPGGWAALL 25


>d1t01a2 a.24.9.1 (A:126-252) Vinculin {Chicken (Gallus gallus)
           [TaxId: 9031]}
          Length = 127

 Score = 24.3 bits (53), Expect = 4.7
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 10/90 (11%)

Query: 66  ELFSFYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERA---------VILSDSKAAIH 116
           +L ++ K LG   T     I   +   L           +         V++S  K  + 
Sbjct: 31  DLVTYTKNLGPGMTKMAKMIDE-RQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVT 89

Query: 117 PMNSVHLNSCPALEASNDIVGTLCSVLNKI 146
             N+       AL+  N  V  + + +N+I
Sbjct: 90  TKNTKSQGIEEALKNRNFTVEKMSAEINEI 119


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli
          [TaxId: 562]}
          Length = 152

 Score = 24.6 bits (52), Expect = 5.0
 Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 45 HIYTDGS-LINPEDGAGAGIF 64
           I+T GS L NP  G    I 
Sbjct: 4  EIFTAGSALGNPGPGGYGAIL 24


>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
           {Nostoc sp. pcc 7120 [TaxId: 103690]}
          Length = 210

 Score = 24.8 bits (54), Expect = 5.2
 Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 13/121 (10%)

Query: 29  MALETINTRYPSDDWL---HIYTDGSL---------INPEDGAGAGI-FCELFSFYKRLG 75
           M L ++    P         ++T  +          I PE  A  G+   EL       G
Sbjct: 49  MVLNSLGINAPETAQYSPYRVFTQDNFFSNEKTKAVIAPEVVARQGMTLDELGRLIASYG 108

Query: 76  TFTTNFDGEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPMNSVHLNSCPALEASNDI 135
                       I+    Q+     Q    VI++  +  I      H++   A     D 
Sbjct: 109 VKVKVNHASDTNIEDFRKQVAENLKQDGNFVIVNYLRKEIGQERGGHISPLAAYNEQTDR 168

Query: 136 V 136
            
Sbjct: 169 F 169


>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId:
           69002]}
          Length = 183

 Score = 24.0 bits (51), Expect = 8.3
 Identities = 7/45 (15%), Positives = 21/45 (46%)

Query: 83  GEIAAIKIALLQILNRTNQFERAVILSDSKAAIHPMNSVHLNSCP 127
           G I+++ I+   +  ++   E  V+++ +   + P ++V      
Sbjct: 15  GSISSVGISSYLLYFKSFFKEIRVVMTKTAEDLIPAHTVSYFCDH 59


>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 162

 Score = 23.8 bits (51), Expect = 9.5
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 10/82 (12%)

Query: 47  YTDGSLINPEDGAGAGIFCELFSFYKRLGTFTTNFDGEIAAIKIALLQILNRTNQFERAV 106
             +G L+  E G         +  Y +          E       ++Q + +   +   +
Sbjct: 50  LRNGELVIHEKG--------FYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPAPI 101

Query: 107 ILSDSKAAIHP--MNSVHLNSC 126
           +L  S             L S 
Sbjct: 102 LLMKSARNSCWSKDAEYGLYSI 123


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.395 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 591,977
Number of extensions: 26113
Number of successful extensions: 54
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 11
Length of query: 160
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 82
Effective length of database: 1,336,656
Effective search space: 109605792
Effective search space used: 109605792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)