BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7632
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 103/204 (50%), Gaps = 34/204 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE+ I G++ SL+ QQL+DC +N N+GCQGG F Y++ G+ E YP+
Sbjct: 35 LESAVAIATGKMLSLAEQQLVDC--AQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDI--FGLSGEKAMRHFIHRKGPV---VAYVNPALMINDYTG 146
+G+ C++ + + V D+ ++ E+AM + PV N LM Y
Sbjct: 93 KGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLM---YRK 149
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ S + +C+ P ++ H V+ VGYG+ G+PYWIV+
Sbjct: 150 GIYS--STSCHKTPDKVNHAVLAVGYGEEN----------------------GIPYWIVK 185
Query: 207 NSWGPRWGYAGYAYVERGTNACGI 230
NSWGP+WG GY +ERG N CG+
Sbjct: 186 NSWGPQWGMNGYFLIERGKNMCGL 209
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 22/195 (11%)
Query: 3 RFEESSVPIPGLGERGGAKNVCTPLHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAAN 62
R + + +P+ G+ G T +E+ IR G L SLS QQL+DC + N
Sbjct: 8 RAKGAVIPLKNQGKCGSCWAFST---VTTVESINQIRTGNLISLSEQQLVDC----SKKN 60
Query: 63 YGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGL--SGEKA 120
+GC+GG+ + Y+ GG+ +E +YP++ QG CR + VV+++ G+ E A
Sbjct: 61 HGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCR--AAKKVVRIDGCKGVPQCNENA 118
Query: 121 MRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVP 180
+++ + + VVA + Y GG+ + P ++L H VVIVGYG+
Sbjct: 119 LKNAVASQPSVVAIDASSKQFQHYKGGIFT------GPCGTKLNHGVVIVGYGKD----- 167
Query: 181 YWIVRNSWGPRWGYE 195
YWIVRNSWG WG +
Sbjct: 168 YWIVRNSWGRHWGEQ 182
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 108/235 (45%), Gaps = 45/235 (19%)
Query: 3 RFEESSVPIPGLGERGGAKNVCTPLHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAAN 62
R + + P+ G+ G T + +E+ IR G L SLS QQL+DC N N
Sbjct: 8 RKKGAVTPVKNQGKCGSCWAFST---VSTVESINQIRTGNLISLSEQQLVDC----NKKN 60
Query: 63 YGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGL--SGEKA 120
+GC+GG + + Y+ GG+ +E +YP++ QG CR + VV+++ G+ E A
Sbjct: 61 HGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCR--AAKKVVRIDGYKGVPHCNENA 118
Query: 121 MRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVP 180
++ + + VVA + Y G+ S P ++L H VVIVGY +
Sbjct: 119 LKKAVASQPSVVAIDASSKQFQHYKSGIFS------GPCGTKLNHGVVIVGYWKD----- 167
Query: 181 YWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER--GTNACGIERV 233
YWIVRNSWG WG GY ++R G CGI R+
Sbjct: 168 ---------------------YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARL 201
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 30/210 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q+F+ G L SLS Q+L+DC + A C GG + + ++ GGL++E DY +
Sbjct: 34 VEGQWFLNQGTLLSLSEQELLDCDKMDKA----CMGGLPSNAYSAIKNLGGLETEDDYSY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
+G +C++ + V + D LS E+ + ++ ++GP+ +N A + Y G+
Sbjct: 90 QGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAIN-AFGMQFYRHGISR 148
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWG 210
C+P + H V++VGYGQ R+ VP+W ++NSWG
Sbjct: 149 PLRPLCSPW--LIDHAVLLVGYGQ----------------------RSDVPFWAIKNSWG 184
Query: 211 PRWGYAGYAYVERGTNACGIERVVILAAIE 240
WG GY Y+ RG+ ACG+ + A ++
Sbjct: 185 TDWGEKGYYYLHRGSGACGVNTMASSAVVD 214
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 90 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG+S+ G +WI++NSW
Sbjct: 150 YYD-ESCNS--DNLNHAVLAVGYGESK----------------------GNKHWIIKNSW 184
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 185 GENWGMGGYIKMARNKNNACGIANLA 210
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 96/211 (45%), Gaps = 32/211 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q ++ G L SLS Q LIDC + + N GC GG S F Y+ G + SE YP+
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSS--SYGNAGCDGGWMDSAFSYIHDYG-IMSESAYPY 204
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
E + CR+ Q V ++ + L E ++ + + GPV ++ + Y+GG+
Sbjct: 205 EAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF 264
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+ CN S L H V++VGYG S G YWI++NSW
Sbjct: 265 YD--QTCNQ--SDLNHGVLVVGYG----------------------SDNGQDYWILKNSW 298
Query: 210 GPRWGYAGY-AYVERGTNACGIERVVILAAI 239
G WG +GY V N CGI A+
Sbjct: 299 GSGWGESGYWRQVRNYGNNCGIATAASYPAL 329
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G+L SLS Q L+DC P+ N GC GG F Y++ GGL SE YP+
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRPQ--GNQGCNGGFMARAFQYVKENGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVN--DIFGLSGEKAMRHFIHRKGPVVAYVNPA-LMINDYTGGV 148
C+Y V Q + EKA+ + GP+ ++ Y G+
Sbjct: 92 VAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 149 -ISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
D + N L H V++VGYG A + YW+V+N
Sbjct: 152 YFEPDCSSKN-----LDHGVLVVGYGFEGA------------------NSDNSKYWLVKN 188
Query: 208 SWGPRWGYAGYAYVERGTNA-CGI 230
SWGP WG GY + + N CGI
Sbjct: 189 SWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 88/204 (43%), Gaps = 30/204 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G+L SLS Q L+DC P+ N GC GG F Y++ GGL SE YP+
Sbjct: 34 LEGQMFRKTGKLVSLSEQNLVDCSRPQ--GNQGCNGGFMARAFQYVKENGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVN--DIFGLSGEKAMRHFIHRKGPVVAYVNPA-LMINDYTGGV 148
C+Y V Q + EKA+ + GP+ ++ Y G+
Sbjct: 92 VAVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGI 151
Query: 149 -ISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
D + N L H V++VGYG A + YW+V+N
Sbjct: 152 YFEPDCSSKN-----LDHGVLVVGYGFEGA------------------NSDNSKYWLVKN 188
Query: 208 SWGPRWGYAGYAYVERGTNA-CGI 230
SWGP WG GY + + N CGI
Sbjct: 189 SWGPEWGSNGYVKIAKDKNNHCGI 212
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 33 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 88
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 89 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 148
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG + G +WI++NSW
Sbjct: 149 YYD-ESCNS--DNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 183
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 184 GENWGNKGYILMARNKNNACGIANLA 209
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 36 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 92 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 151
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG + G +WI++NSW
Sbjct: 152 YYD-ESCNS--DNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 186
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 187 GENWGNKGYILMARNKNNACGIANLA 212
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 90 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG + G +WI++NSW
Sbjct: 150 YYD-ESCNS--DNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 184
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 185 GENWGNKGYILMARNKNNACGIANLA 210
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 93/202 (46%), Gaps = 32/202 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 188
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 189 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 248
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG + G +WI++NSW
Sbjct: 249 YYD-ESCNS--DNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 283
Query: 210 GPRWGYAGYAYVERG-TNACGI 230
G WG GY + R NACGI
Sbjct: 284 GENWGNKGYILMARNKNNACGI 305
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 32 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 87
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G++ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 88 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 147
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D +CN L H V+ VGYG + G +WI++NSW
Sbjct: 148 YYD-ESCNS--DNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 182
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 183 GENWGNKGYILMARNKNNACGIANLA 208
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 102/211 (48%), Gaps = 41/211 (19%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E+ IR G+L SLS Q+L+DC + A++GC GG + F Y+ GG+ ++++Y
Sbjct: 32 AAVESINKIRTGQLISLSEQELVDC----DTASHGCNGGWMNNAFQYIITNGGIDTQQNY 87
Query: 90 PFEGKQGACR-YVLGQDVVQVNDIFGLS--GEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P+ QG+C+ Y L VV +N ++ E A++ + + V Y+
Sbjct: 88 PYSAVQGSCKPYRL--RVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSS 145
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ + P + H VVIVGYG +++G YWIVR
Sbjct: 146 GIFT------GPCGTAQNHGVVIVGYG----------------------TQSGKNYWIVR 177
Query: 207 NSWGPRWGYAGYAYVERGTNA----CGIERV 233
NSWG WG GY ++ER + CGI ++
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQL 208
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC PE N GC GG F Y+Q GGL SE YP+
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGPE--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 183
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 184 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 238
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRA--GVPYWIVR 206
+ P S + H V++VGYG +ES G YW+V+
Sbjct: 239 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDGNKYWLVK 278
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 279 NSWGEEWGMGGYVKMAKDRRNHCGI 303
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 92/213 (43%), Gaps = 35/213 (16%)
Query: 32 LEAQFFIRHGE--LPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
+E+Q I +G S+S QQL+DC NA GC GG F Y+ GG+ SE Y
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDC--VPNA--LGCSGGWMNDAFTYVAQNGGIDSEGAY 204
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVNPALMINDYTGG 147
P+E G C Y Q +++ LSG E + + KGPV + Y+GG
Sbjct: 205 PYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGG 264
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
V + N + TH V+IVGYG G YW+V+N
Sbjct: 265 VYYNPTCETN----KFTHAVLIVGYGNEN----------------------GQDYWLVKN 298
Query: 208 SWGPRWGYAGYAYVERGTNA-CGIERVVILAAI 239
SWG WG GY + R N CGI V + +
Sbjct: 299 SWGDGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 91/206 (44%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDCV----SENDGCGGGYMTNAFQYVQRNRGIDSEDAYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G+ +C Y + + EKA++ + R GPV ++ +L + +
Sbjct: 90 VGQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D N L H V+ VGYG + G +WI++NSW
Sbjct: 150 YYDE---NCSSDNLNHAVLAVGYGIQK----------------------GNKHWIIKNSW 184
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG GY + R NACGI +
Sbjct: 185 GESWGNKGYILMARNKNNACGIANLA 210
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 16/168 (9%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLS---GEKAMRHFIHRKGPVVAYVN---PALMINDYT 145
E + +C+Y V ND+ + EKA+ + GP+ ++ + + Y
Sbjct: 92 EATEESCKYNPKYSV--ANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YK 147
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G+ + S L H +++VGYG YW+V+NSWG WG
Sbjct: 148 EGIYFSSDCS----SSSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWG 191
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 32/211 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q+ S S QQL+DC P N GC GG + + YL+ GL++E YP+
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRP--WGNNGCGGGLMENAYQYLK-QFGLETESSYPY 181
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
+G CRY V +V + + E +++ + +GP V+ Y G+
Sbjct: 182 TAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI- 240
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+ ++ C+P R+ H V+ VGYG ++ G YWIV+NSW
Sbjct: 241 -YQSQTCSP--LRVNHAVLAVGYG----------------------TQGGTDYWIVKNSW 275
Query: 210 GPRWGYAGYAYVERGT-NACGIERVVILAAI 239
G WG GY + R N CGI + L +
Sbjct: 276 GLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/166 (36%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 38 IRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGA 97
IR G L SLS Q+LIDC + A N GCQGG + F Y++ GGL +E YP+ +G
Sbjct: 43 IRTGSLVSLSEQELIDC---DTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGT 99
Query: 98 CRYVLGQD----VVQVN---DIFGLSGEKAMRHFIHRKGPV-VAYVNPALMINDYTGGVI 149
C VV ++ D+ S E R ++ V V A M Y+ GV
Sbjct: 100 CNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMF--YSEGVF 157
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
+ + C + L H V +VGYG + G YW V+NSWGP WG +
Sbjct: 158 TGE---CG---TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQ 197
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 186
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 187 NSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 93 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 147
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 148 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 187
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 188 NSWGEEWGMGGYVKMAKDRRNHCGI 212
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 35 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 93 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 147
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 148 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 187
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 188 NSWGEEWGMGGYVKMAKDRRNHCGI 212
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 186
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 187 NSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 186
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 187 NSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 187
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 188 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 242
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 243 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 282
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 283 NSWGEEWGMGGYVKMAKDRRNHCGI 307
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 72 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 129
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 130 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 184
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 185 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 224
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 225 NSWGEEWGMGGYVKMAKDRRNHCGI 249
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 87.0 bits (214), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP--YWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDDNKYWLVK 186
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 187 NSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 87.0 bits (214), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 88/205 (42%), Gaps = 33/205 (16%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV--PYWIVR 206
+ P S + H V++VGYG +ES YW+V+
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG--------------------FESTESDNNKYWLVK 186
Query: 207 NSWGPRWGYAGYAYVERG-TNACGI 230
NSWG WG GY + + N CGI
Sbjct: 187 NSWGEEWGMGGYVKMAKDRRNHCGI 211
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G+L SLS Q+L+DC +N GC GG F ++ GG+ +E +Y
Sbjct: 32 AAVEGINKIATGDLISLSEQELVDCGRTQNTR--GCDGGFMTDGFQFIINNGGINTEANY 89
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFG---LSGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P+ ++G C L Q+ D + + E A++ + + VA Y+
Sbjct: 90 PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSS 149
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ + P + + H V IVGYG + G+ YWIV+
Sbjct: 150 GIFT------GPCGTAVDHAVTIVGYG----------------------TEGGIDYWIVK 181
Query: 207 NSWGPRWGYAGYAYVER---GTNACGIER 232
NSWG WG GY ++R G CGI +
Sbjct: 182 NSWGTTWGEEGYMRIQRNVGGVGQCGIAK 210
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 91/209 (43%), Gaps = 36/209 (17%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G+L SLS Q+L+DC +N GC GG F ++ GG+ +E +Y
Sbjct: 32 AAVEGINKIATGDLISLSEQELVDCGRTQNTR--GCDGGFMTDGFQFIINNGGINTEANY 89
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFG---LSGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P+ ++G C L Q+ D + + E A++ + + VA Y+
Sbjct: 90 PYTAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSS 149
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ + P + + H V IVGYG + G+ YWIV+
Sbjct: 150 GIFT------GPCGTAVDHAVTIVGYG----------------------TEGGIDYWIVK 181
Query: 207 NSWGPRWGYAGYAYVER---GTNACGIER 232
NSWG WG GY ++R G CGI +
Sbjct: 182 NSWGTTWGEEGYMRIQRNVGGVGQCGIAK 210
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 101/223 (45%), Gaps = 46/223 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+EA I G L SLS Q+LIDC + GC G +F ++ GG+ SE DYP+
Sbjct: 35 IEAAHAIATGNLVSLSEQELIDCVDESE----GCYNGWHYQSFEWVVKHGGIASEADYPY 90
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLS----------GEKAMRHFIHRKGPVVAYVNPALMI 141
+ + G C+ QD V + D +G+ E +++ F+ + P+ ++ A
Sbjct: 91 KARDGKCKANEIQDKVTI-DNYGVQILSNESTESEAESSLQSFVLEQ-PISVSID-AKDF 147
Query: 142 NDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP 201
+ Y+GG+ +D C+ P + H V+IVGYG S GV
Sbjct: 148 HFYSGGI--YDGGNCSS-PYGINHFVLIVGYG----------------------SEDGVD 182
Query: 202 YWIVRNSWGPRWGYAGYAYVERGT----NACGIERVVILAAIE 240
YWI +NSWG WG GY ++R T CG+ IE
Sbjct: 183 YWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q G L +L+ Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 34 LEGQLKKATGALLNLAPQNLVDCV----SENDGCGGGYMTNAFQYVQRNRGIDSEDAYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
G+ +C Y + + E A++ + GPV ++ +L + +
Sbjct: 90 VGQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGV 149
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+D N L H V+ VGYG +AG +WI++NSW
Sbjct: 150 YYDE---NCSSDALNHAVLAVGYG----------------------IQAGNKHWIIKNSW 184
Query: 210 GPRWGYAGYAYVERG-TNACGIERVV 234
G WG AGY + R NACGI +
Sbjct: 185 GESWGNAGYILMARNKNNACGIANLA 210
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
+ +E+ IR G L SLS Q+L+DC + N+GC GG + + Y+ GG+ ++ +Y
Sbjct: 32 STVESINQIRTGNLISLSEQELVDC----DKKNHGCLGGAFVFAYQYIINNGGIDTQANY 87
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTGG 147
P++ QG C+ VV ++ G+ E A++ + + VA + Y+ G
Sbjct: 88 PYKAVQGPCQ--AASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSG 145
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
+ S P ++L H V IVGY + YWIVRNSWG WG
Sbjct: 146 IFS------GPCGTKLNHGVTIVGYQAN-----YWIVRNSWGRYWG 180
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/207 (29%), Positives = 88/207 (42%), Gaps = 36/207 (17%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G L SLS Q+LIDC +N GC GG+ F ++ GG+ +E +Y
Sbjct: 32 ATVEGINKITSGSLISLSEQELIDCGRTQNTR--GCDGGYITDGFQFIINDGGINTEENY 89
Query: 90 PFEGKQGACRYVL-GQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P+ + G C L Q V ++ + + E A++ + + VA Y
Sbjct: 90 PYTAQDGDCDVALQDQKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYAS 149
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ + P + + H +VIVGYG + GV YWIV+
Sbjct: 150 GIFT------GPCGTAVDHAIVIVGYG----------------------TEGGVDYWIVK 181
Query: 207 NSWGPRWGYAGYAYVER---GTNACGI 230
NSW WG GY + R G CGI
Sbjct: 182 NSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 94/229 (41%), Gaps = 41/229 (17%)
Query: 9 VPIPGLGERGGAKNVCTPLHA-ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQG 67
V I GE GG C A A +E I G L SLS Q+LIDC +N GC G
Sbjct: 14 VDIKSQGECGG----CWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR--GCNG 67
Query: 68 GHAMSTFYYLQIAGGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFG---LSGEKAMRHF 124
G+ F ++ GG+ +E +YP+ + G C L + D + + E A++
Sbjct: 68 GYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTA 127
Query: 125 IHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIV 184
+ + VA Y+ G+ + P + + H V IVGYG
Sbjct: 128 VTYQPVSVALDAAGDAFKQYSSGIFT------GPCGTAIDHAVTIVGYG----------- 170
Query: 185 RNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER---GTNACGI 230
+ G+ YWIV+NSW WG GY + R G CGI
Sbjct: 171 -----------TEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 77/165 (46%), Gaps = 24/165 (14%)
Query: 38 IRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGA 97
I+ +L SLS Q+L+DC +N GC GG F +++ GG+ +E +YP+E G
Sbjct: 41 IKTNKLVSLSEQELVDCDTDQNQ---GCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGT 97
Query: 98 CRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGV 148
C + G + V ND E A+ + + VA Y+ GV
Sbjct: 98 CDVSKENAPAVSIDGHENVPEND------ENALLKAVANQPVSVAIDAGGSDFQFYSEGV 151
Query: 149 ISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
+ +C + L H V IVGYG + G YW V+NSWGP WG
Sbjct: 152 FTG---SCG---TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWG 190
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 193
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 36 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 94
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 95 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 152
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 153 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 195
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 93
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 94 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 151
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 152 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 194
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 38/209 (18%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G+L SLS QQL+DC AN+GC+GG F ++ GG+ SE Y
Sbjct: 34 AAVEGINQIVTGDLISLSEQQLVDC----TTANHGCRGGWMNPAFQFIVNNGGINSEETY 89
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFGLS--GEKAMRHFIHRKGPVVAYVNPALMINDYTGG 147
P+ G+ G C + VV ++ + E++++ + + V Y G
Sbjct: 90 PYRGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSG 149
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
+ + +CN + H + +VGYG + +WIV+N
Sbjct: 150 IFTG---SCNISAN---HALTVVGYG----------------------TENDKDFWIVKN 181
Query: 208 SWGPRWGYAGYAYVERGTN----ACGIER 232
SWG WG +GY ER CGI R
Sbjct: 182 SWGKNWGESGYIRAERNIENPDGKCGITR 210
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 93
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 94 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 151
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 152 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 194
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 37 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 95
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 96 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 153
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 154 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 196
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 93
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 94 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 151
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 152 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 194
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 193
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 190
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 191 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 248
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 249 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 291
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 193
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 14/169 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L +LS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVTLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
GV + N + H V++VGYG G YW+V+NSWG +G E
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFGEE 193
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 14/167 (8%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
GV + N + H V++VGYG G YW+V+NSWG +G
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN-GKEYWLVKNSWGHNFG 191
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDLKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV + N + H V++VGYG G YW+V+
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN----------------------GKEYWLVK 183
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG +G GY + R N CGI
Sbjct: 184 NSWGHNFGEEGYIRMARNKGNHCGI 208
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 19 GAKNVCTPLHAA-LLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL 77
GA +C A +E I G L S+S QQ++DC GG A F ++
Sbjct: 20 GACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXX----XGGDADDAFRWV 75
Query: 78 QIAGGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYV 135
GG+ S+ +YP+ G G C L + + D + + A+ + ++ V
Sbjct: 76 ITNGGIASDANYPYTGVDGTCD--LNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIY 133
Query: 136 NPALMINDYTG-GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGY 194
+ YTG G+ + +C+ P+ + H V+IVGYG + YWIV+NSWG WG
Sbjct: 134 TSSTSFQLYTGPGIFA--GSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGI 191
Query: 195 E 195
+
Sbjct: 192 D 192
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 36/205 (17%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + + N GC GG + F Y+ G+ S+ YP+
Sbjct: 34 LEAQLKLKTGKLVSLSAQNLVDC-STKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y L E ++ + KGPV V+ P+ + Y
Sbjct: 93 KAMDQKCQYDSAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 150
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV + N + H V++VGYG G YW+V+
Sbjct: 151 GVYYEPSCTQN-----VNHGVLVVGYGDLN----------------------GKEYWLVK 183
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG +G GY + R N CGI
Sbjct: 184 NSWGHNFGEKGYIRMARNKGNHCGI 208
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 96/214 (44%), Gaps = 39/214 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E Q+ + L SLS Q L+ C + ++GC GG + F ++ G + +E Y
Sbjct: 34 IEGQWQVAGNPLVSLSEQMLVSC----DTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASY 89
Query: 90 PF---EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYT 145
P+ G+Q C+ + + D L E A+ ++ GP+ V+ A DY
Sbjct: 90 PYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVD-ATSFMDYN 148
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIV 205
GG+++ +C +L H V++VGY + + PYWI+
Sbjct: 149 GGILT----SCTSE--QLDHGVLLVGYNDA----------------------SNPPYWII 180
Query: 206 RNSWGPRWGYAGYAYVERGTNACGIERVVILAAI 239
+NSW WG GY +E+GTN C + + V A +
Sbjct: 181 KNSWSNMWGEDGYIRIEKGTNQCLMNQAVSSAVV 214
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE + G+L SLS Q+L+DC E N C GG F Y+ +GG+ SE YP+
Sbjct: 40 LEGAHCAKTGKLVSLSEQELMDCSRAE--GNQSCSGGEMNDAFQYVLDSGGICSEDAYPY 97
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLS-----GEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
+ CR Q +V I G E AM+ + + +A + Y
Sbjct: 98 LARDEECR---AQSCEKVVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFYHE 154
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV +C + L H V++VGYG + ES+ +WI++
Sbjct: 155 GVFDA---SCG---TDLDHGVLLVGYGTDK------------------ESKK--DFWIMK 188
Query: 207 NSWGPRWGYAGYAYV 221
NSWG WG GY Y+
Sbjct: 189 NSWGTGWGRDGYMYM 203
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 56/214 (26%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G+L SLS Q+L+DC ++GC GG+ ++ Y+ + G+ +ER+Y
Sbjct: 32 ATIEGINKIITGQLISLSEQELLDCER----RSHGCDGGYQTTSLQYV-VDNGVHTEREY 86
Query: 90 PFEGKQGACR---------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALM 140
P+E KQG CR Y+ G V ND E ++ I + V +
Sbjct: 87 PYEKKQGRCRAKDKKGPKVYITGYKYVPAND------EISLIQAIANQPVSVVTDSRGRG 140
Query: 141 INDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV 200
Y GG+ P + H V VGYG++
Sbjct: 141 FQFYKGGIYE------GPCGTNTDHAVTAVGYGKT------------------------- 169
Query: 201 PYWIVRNSWGPRWGYAGYAYVERGT----NACGI 230
Y +++NSWGP WG GY ++R + CG+
Sbjct: 170 -YLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 95/225 (42%), Gaps = 49/225 (21%)
Query: 31 LLEAQFFI--RHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG------G 82
+LEA+ I + + P LS Q+++ C GC+GG F YL IAG G
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQ----GCEGG-----FPYL-IAGKYAQDFG 291
Query: 83 LQSERDYPFEGKQGACRYVLGQDVVQ--------VNDIFGLSGEKAMRHFIHRKGPVVAY 134
L E +P+ G C+ + +D + V +G E M+ + GP+
Sbjct: 292 LVEEACFPYTGTDSPCK--MKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVA 349
Query: 135 VNPALMINDYTGGVISHDARACNPHPSRLT-HMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
Y G+ H +P LT H V++VGYG
Sbjct: 350 FEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGT------------------- 390
Query: 194 YESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILAA 238
+S +G+ YWIV+NSWG WG GY + RGT+ C IE + + A
Sbjct: 391 -DSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 43/209 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E Q+F+ L +LS Q L+ C ++ GC GG + F ++ + G + +E Y
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDS----GCSGGLMNNAFEWIVQENNGAVYTEDSY 89
Query: 90 PF---EGKQGACR---YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+ EG C + +G + ++ E + ++ GPV V+ + +
Sbjct: 90 PYASGEGISPPCTTSGHTVGATITGHVEL--PQDEAQIAAWLAVNGPVAVAVDASSWMT- 146
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
YTGGV++ +L H V++VGY S A VPYW
Sbjct: 147 YTGGVMTSCVS------EQLDHGVLLVGYNDS----------------------AAVPYW 178
Query: 204 IVRNSWGPRWGYAGYAYVERGTNACGIER 232
I++NSW +WG GY + +G+N C ++
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E Q+F+ L +LS Q L+ C ++ GC GG + F ++ + G + +E Y
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSCDKTDS----GCSGGLMNNAFEWIVQENNGAVYTEDSY 89
Query: 90 PF---EGKQGACR---YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+ EG C + +G + ++ E + ++ GPV V+ + +
Sbjct: 90 PYASGEGISPPCTTSGHTVGATITGHVEL--PQDEAQIAAWLAVNGPVAVAVDASSWMT- 146
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
YTGGV++ L H V++VGY S A VPYW
Sbjct: 147 YTGGVMTSCVS------EALDHGVLLVGYNDS----------------------AAVPYW 178
Query: 204 IVRNSWGPRWGYAGYAYVERGTNACGIER 232
I++NSW +WG GY + +G+N C ++
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYG 173
+ P S + H V++VGYG
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQ--GNEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
E + +C+Y V + EKA+ + GP+ ++ + +
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAG-----HESFLFY 146
Query: 151 HDARACNPHPSR--LTHMVVIVGYG 173
+ P S + H V++VGYG
Sbjct: 147 KEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E Q+F+ L +L+ Q L+ C ++ GC GG + F ++ + G + +E Y
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDS----GCSGGLMNNAFEWIVQENNGAVYTEDSY 89
Query: 90 PF---EGKQGACR---YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+ EG C + +G + ++ E + ++ GPV V+ + +
Sbjct: 90 PYASGEGISPPCTTSGHTVGATITGHVEL--PQDEAQIAAWLAVNGPVAVAVDASSWMT- 146
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
YTGGV++ +L H V++VGY A VPYW
Sbjct: 147 YTGGVMTSCVS------EQLDHGVLLVGYNDG----------------------AAVPYW 178
Query: 204 IVRNSWGPRWGYAGYAYVERGTNACGIER 232
I++NSW +WG GY + +G+N C ++
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E Q+F+ L +L+ Q L+ C ++ GC GG + F ++ + G + +E Y
Sbjct: 34 VECQWFLAGHPLTNLAEQMLVSCDKTDS----GCSGGLMNNAFEWIVQENNGAVYTEDSY 89
Query: 90 PF---EGKQGACR---YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+ EG C + +G + ++ E + ++ GPV V+ + +
Sbjct: 90 PYASGEGISPPCTTSGHTVGATITGHVEL--PQDEAQIAAWLAVNGPVAVAVDASSWMT- 146
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
YTGGV++ +L H V++VGY A VPYW
Sbjct: 147 YTGGVMTSCVS------EQLDHGVLLVGYNDG----------------------AAVPYW 178
Query: 204 IVRNSWGPRWGYAGYAYVERGTNACGIER 232
I++NSW +WG GY + +G+N C ++
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 94/222 (42%), Gaps = 45/222 (20%)
Query: 31 LLEAQFFI--RHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG------G 82
+LEA+ I + + P LS Q+++ C + GC GG F YL IAG G
Sbjct: 241 MLEARIRILTNNSQTPILSPQEVVSC----SPYAQGCDGG-----FPYL-IAGKYAQDFG 290
Query: 83 LQSERDYPFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN 136
+ E +P+ C+ + V +G E M+ + + GP+
Sbjct: 291 VVEENCFPYTATDAPCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFE 350
Query: 137 PALMINDYTGGVISHDARACNPHPSRLT-HMVVIVGYGQSRAGVPYWIVRNSWGPRWGYE 195
Y G+ H + +P LT H V++VGYG+ +
Sbjct: 351 VHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGK--------------------D 390
Query: 196 SRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILA 237
G+ YWIV+NSWG +WG +GY + RGT+ C IE + + A
Sbjct: 391 PVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAA 432
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+Q+ IR L S Q+L+DC + N GC GG+ + F + GGL S+ DYP+
Sbjct: 53 VESQYAIRKKALFLFSEQELVDC----SVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPY 108
Query: 92 EG--------KQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
K+ RY + V +D F ++A+R+ GP+ + +
Sbjct: 109 VSNLPETCNLKRCNERYTIKSYVSIPDDKF----KEALRYL----GPISISIAASDDFAF 160
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
Y GG + C P+ H V++VGYG +++ + G + Y+
Sbjct: 161 YRGGFYDGE---CGAAPN---HAVILVGYG----------MKDIYNEDTGRMEK--FYYY 202
Query: 204 IVRNSWGPRWGYAGYAYVERGTN 226
I++NSWG WG GY +E N
Sbjct: 203 IIKNSWGSDWGEGGYINLETDEN 225
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 29 AALLEAQFFIRHGELPS--LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSE 86
+A+ + R G PS LSVQ +IDC N + C+GG+ +S + Y G+ E
Sbjct: 38 SAMADRINIKRKGAWPSTLLSVQNVIDCGNAGS-----CEGGNDLSVWDYAH-QHGIPDE 91
Query: 87 RDYPFEGKQ---------------GACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPV 131
++ K C + + +V D LSG + M I+ GP+
Sbjct: 92 TCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPI 151
Query: 132 VAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPR 191
+ + +YTGG+ + + + H+V + G+G S G YWIVRNSWG
Sbjct: 152 SCGIMATERLANYTGGIYAE-----YQDTTYINHVVSVAGWGISD-GTEYWIVRNSWGEP 205
Query: 192 WG 193
WG
Sbjct: 206 WG 207
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 29/182 (15%)
Query: 29 AALLEAQFFIRHGELPS--LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSE 86
+A+ + R G PS LSVQ +IDC N + C+GG+ +S + Y G+ E
Sbjct: 73 SAMADRINIKRKGAWPSTLLSVQNVIDCGNAGS-----CEGGNDLSVWDYAH-QHGIPDE 126
Query: 87 RDYPFEGKQ---------------GACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPV 131
++ K C + + +V D LSG + M I+ GP+
Sbjct: 127 TCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPI 186
Query: 132 VAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPR 191
+ + +YTGG+ + + + H+V + G+G S G YWIVRNSWG
Sbjct: 187 SCGIMATERLANYTGGIYAE-----YQDTTYINHVVSVAGWGISD-GTEYWIVRNSWGEP 240
Query: 192 WG 193
WG
Sbjct: 241 WG 242
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 30/204 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+Q+ IR +L +LS Q+L+DC + NYGC GG + F + GG+ + DYP+
Sbjct: 50 VESQYAIRKNKLITLSEQELVDC----SFKNYGCNGGLINNAFEDMIELGGICPDGDYPY 105
Query: 92 -EGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
C + + + + K ++ + GP+ V + Y G+
Sbjct: 106 VSDAPNLCNIDRCTEKYGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGIFD 164
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP--YWIVRNS 208
+ +L H V++VG+G P ++ G Y+I++NS
Sbjct: 165 GEC------GDQLNHAVMLVGFGMKEIVNPL--------------TKKGEKHYYYIIKNS 204
Query: 209 WGPRWGYAGYAYVERGTNACGIER 232
WG +WG G+ +E T+ G+ R
Sbjct: 205 WGQQWGERGFINIE--TDESGLMR 226
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 32/216 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+Q+ IR +L +LS Q+L+DC + NYGC GG + F + GG+ + DYP+
Sbjct: 51 VESQYAIRKNKLITLSEQELVDC----SFKNYGCNGGLINNAFEDMIELGGICPDGDYPY 106
Query: 92 -EGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
C + + + + K ++ + GP+ V + Y G+
Sbjct: 107 VSDAPNLCNIDRCTEKYGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGIFD 165
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP--YWIVRNS 208
+ +L H V++VG+G P ++ G Y+I++NS
Sbjct: 166 GEC------GDQLNHAVMLVGFGMKEIVNPL--------------TKKGEKHYYYIIKNS 205
Query: 209 WGPRWGYAGYAYVERGTN----ACGIERVVILAAIE 240
WG +WG G+ +E + CG+ + IE
Sbjct: 206 WGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 29/174 (16%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I G L LS Q+L+DC + +YGC+GG+ ++ Y+ G+ + + Y
Sbjct: 32 ATVEGINKIVTGNLLELSEQELVDC----DKHSYGCKGGYQTTSLQYV-ANNGVHTSKVY 86
Query: 90 PFEGKQGACR---------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNP-AL 139
P++ KQ CR + G V N G A + P+ V
Sbjct: 87 PYQAKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQ-------PLSVLVEAGGK 139
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
Y GV P ++L H V VGYG S G Y I++NSWGP WG
Sbjct: 140 PFQLYKSGVFD------GPCGTKLDHAVTAVGYGTSD-GKNYIIIKNSWGPNWG 186
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 86/231 (37%), Gaps = 73/231 (31%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A E+ + LS Q+L+DC A+ +GC G Y+Q G+ ER Y
Sbjct: 42 AATESAYLAYRNTSLDLSEQELVDC-----ASQHGCHGDTIPRGIEYIQ-QNGVVEERSY 95
Query: 90 PFEGKQGACRYVLGQ-------------DVVQVND--------IFGLSGEKAMRHFIHRK 128
P+ ++ CR Q DV Q+ + I + G K +R F H
Sbjct: 96 PYVAREQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYD 155
Query: 129 GPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSW 188
G +I HD P+ H V IVGYG S G YWIVRN
Sbjct: 156 GRT----------------IIQHD-NGYQPN----YHAVNIVGYG-STQGDDYWIVRN-- 191
Query: 189 GPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIER---VVIL 236
SW WG +GY Y + G N IE+ VVI+
Sbjct: 192 -------------------SWDTTWGDSGYGYFQAGNNLMMIEQYPYVVIM 223
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 51/210 (24%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG--GLQSER 87
+ +E+ IR G L S Q+L+DC + +YGC GG+ S LQ+ G+
Sbjct: 183 STIESIIKIRTGNLNEYSEQELLDC----DRRSYGCNGGYPWSA---LQLVAQYGIHYRN 235
Query: 88 DYPFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMI 141
YP+EG Q CR Y D V+ + E A+ + I + V
Sbjct: 236 TYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---EGALLYSIANQPVSVVLEAAGKDF 292
Query: 142 NDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP 201
Y GG+ P +++ H V VGYG +
Sbjct: 293 QLYRGGIF------VGPCGNKVDHAVAAVGYGPN-------------------------- 320
Query: 202 YWIVRNSWGPRWGYAGYAYVERGT-NACGI 230
Y ++RNSWG WG GY ++RGT N+ G+
Sbjct: 321 YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 84/216 (38%), Gaps = 51/216 (23%)
Query: 19 GAKNVCTPLHAAL-LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL 77
G+ C A + +E IR G L S Q+L+DC + +YGC GG+ S L
Sbjct: 20 GSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC----DRRSYGCNGGYPWSA---L 72
Query: 78 QIAG--GLQSERDYPFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKG 129
Q+ G+ YP+EG Q CR Y D V+ + E A+ + I +
Sbjct: 73 QLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---EGALLYSIANQP 129
Query: 130 PVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWG 189
V Y GG+ P +++ H V VGYG +
Sbjct: 130 VSVVLEAAGKDFQLYRGGIF------VGPCGNKVDHAVAAVGYGPN-------------- 169
Query: 190 PRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225
Y +++NSWG WG GY ++RGT
Sbjct: 170 ------------YILIKNSWGTGWGENGYIRIKRGT 193
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 50/202 (24%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG--GLQSERDY 89
+E IR G L S Q+L+DC + +YGC GG+ S LQ+ G+ Y
Sbjct: 34 IEGIIKIRTGNLNEYSEQELLDC----DRRSYGCNGGYPWSA---LQLVAQYGIHYRNTY 86
Query: 90 PFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+EG Q CR Y D V+ + E A+ + I + V
Sbjct: 87 PYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---EGALLYSIANQPVSVVLEAAGKDFQL 143
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
Y GG+ P +++ H V VGYG + Y
Sbjct: 144 YRGGIF------VGPCGNKVDHAVAAVGYGPN--------------------------YI 171
Query: 204 IVRNSWGPRWGYAGYAYVERGT 225
+++NSWG WG GY ++RGT
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGT 193
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 50/202 (24%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG--GLQSERDY 89
+E IR G L S Q+L+DC + +YGC GG+ S LQ+ G+ Y
Sbjct: 34 IEGIIKIRTGNLNQYSEQELLDC----DRRSYGCNGGYPWSA---LQLVAQYGIHYRNTY 86
Query: 90 PFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+EG Q CR Y D V+ + E A+ + I + V
Sbjct: 87 PYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---EGALLYSIANQPVSVVLEAAGKDFQL 143
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
Y GG+ P +++ H V VGYG + Y
Sbjct: 144 YRGGIF------VGPCGNKVDHAVAAVGYGPN--------------------------YI 171
Query: 204 IVRNSWGPRWGYAGYAYVERGT 225
+++NSWG WG GY ++RGT
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 55.5 bits (132), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILA 237
+G +S +G+ YWIV+NSWG WG GY + RGT+ C IE + + A
Sbjct: 18 YGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 51/216 (23%)
Query: 19 GAKNVCTPLHAAL-LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL 77
G+ C A + +E IR G L S Q+L+DC + +YGC GG+ S L
Sbjct: 20 GSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC----DRRSYGCNGGYPWSA---L 72
Query: 78 QIAG--GLQSERDYPFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKG 129
Q+ G+ YP+EG Q CR Y D V+ + + A+ + I +
Sbjct: 73 QLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---QGALLYSIANQP 129
Query: 130 PVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWG 189
V Y GG+ P +++ H V VGYG +
Sbjct: 130 VSVVLQAAGKDFQLYRGGIF------VGPCGNKVDHAVAAVGYGPN-------------- 169
Query: 190 PRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225
Y +++NSWG WG GY ++RGT
Sbjct: 170 ------------YILIKNSWGTGWGENGYIRIKRGT 193
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 84/216 (38%), Gaps = 51/216 (23%)
Query: 19 GAKNVCTPLHAAL-LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL 77
G+ C A + +E IR G L S Q+L+DC + +YGC GG+ S L
Sbjct: 20 GSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDC----DRRSYGCNGGYPWSA---L 72
Query: 78 QIAG--GLQSERDYPFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKG 129
Q+ G+ YP+EG Q CR Y D V+ + + A+ + I +
Sbjct: 73 QLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---QGALLYSIANQP 129
Query: 130 PVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWG 189
V Y GG+ P +++ H V VGYG +
Sbjct: 130 VSVVLQAAGKDFQLYRGGIF------VGPCGNKVDHAVAAVGYGPN-------------- 169
Query: 190 PRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225
Y +++NSWG WG GY ++RGT
Sbjct: 170 ------------YILIKNSWGTGWGENGYIRIKRGT 193
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 50/202 (24%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG--GLQSERDY 89
+E IR G L S Q+L+DC + +YGC GG+ S LQ+ G+ Y
Sbjct: 34 IEGIIKIRTGNLNQYSEQELLDC----DRRSYGCNGGYPWSA---LQLVAQYGIHYRNTY 86
Query: 90 PFEGKQGACR------YVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMIND 143
P+EG Q CR Y D V+ + + A+ + I + V
Sbjct: 87 PYEGVQRYCRSREKGPYAAKTDGVRQVQPYN---QGALLYSIANQPVSVVLQAAGKDFQL 143
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYW 203
Y GG+ P +++ H V VGYG + Y
Sbjct: 144 YRGGIF------VGPCGNKVDHAVAAVGYGPN--------------------------YI 171
Query: 204 IVRNSWGPRWGYAGYAYVERGT 225
+++NSWG WG GY ++RGT
Sbjct: 172 LIKNSWGTGWGENGYIRIKRGT 193
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 36/197 (18%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E IR G+L LS Q+L+DC ++GC+GG+ Y+ G+ Y
Sbjct: 32 ATVEGINKIRTGKLVELSEQELVDCER----RSHGCKGGYPPYALEYVA-KNGIHLRSKY 86
Query: 90 PFEGKQGACR-YVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P++ KQG CR +G +V+ + + + + E + + I ++ V + Y G
Sbjct: 87 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 146
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ P +++ H V VGYG+S +++
Sbjct: 147 GIFE------GPCGTKVEHAVTAVGYGKSGGKGYI----------------------LIK 178
Query: 207 NSWGPRWGYAGYAYVER 223
NSWG WG GY ++R
Sbjct: 179 NSWGTAWGEKGYIRIKR 195
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 84/197 (42%), Gaps = 36/197 (18%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E IR G+L LS Q+L+DC ++GC+GG+ Y+ G+ Y
Sbjct: 32 ATVEGINKIRTGKLVELSEQELVDCER----RSHGCKGGYPPYALEYVA-KNGIHLRSKY 86
Query: 90 PFEGKQGACR-YVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P++ KQG CR +G +V+ + + + + E + + I ++ V + Y G
Sbjct: 87 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 146
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ P +++ H V VGYG+S +++
Sbjct: 147 GIFE------GPCGTKVDHAVTAVGYGKSGGKGYI----------------------LIK 178
Query: 207 NSWGPRWGYAGYAYVER 223
NSWG WG GY ++R
Sbjct: 179 NSWGTAWGEKGYIRIKR 195
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A E+ + + L+ Q+L+DC A+ +GC G Y+Q G +Q E Y
Sbjct: 121 AATESAYLAYRDQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYIQHNGVVQ-ESYY 174
Query: 90 PFEGKQGACRYVLGQDVVQVN--DIFGLSGEKAMRHF--IHRKGPVVAYVNPALMINDYT 145
+ ++ +CR Q N I+ + K H V+ + Y
Sbjct: 175 RYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD 234
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G I P+ H V IVGY ++ GV YWIVRNSW WG
Sbjct: 235 GRTIIQRDNGYQPN----YHAVNIVGYSNAQ-GVDYWIVRNSWDTNWG 277
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A E+ + + L+ Q+L+DC A+ +GC G Y+Q G +Q E Y
Sbjct: 41 AATESAYLAYRQQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYIQHNGVVQ-ESYY 94
Query: 90 PFEGKQGACRYVLGQD--VVQVNDIFGLSGEKAMRHF--IHRKGPVVAYVNPALMINDYT 145
+ ++ +CR Q + I+ + K H V+ + Y
Sbjct: 95 RYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD 154
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G I P+ H V IVGY ++ GV YWIVRNSW WG
Sbjct: 155 GRTIIQRDNGYQPN----YHAVNIVGYSNAQ-GVDYWIVRNSWDTNWG 197
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A E+ + + L+ Q+L+DC A+ +GC G Y+Q G +Q E Y
Sbjct: 41 AATESAYLAYRQQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYIQHNGVVQ-ESYY 94
Query: 90 PFEGKQGACRYVLGQD--VVQVNDIFGLSGEKAMRHF--IHRKGPVVAYVNPALMINDYT 145
+ ++ +CR Q + I+ + K H V+ + Y
Sbjct: 95 RYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD 154
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G I P+ H V IVGY ++ GV YWIVRNSW WG
Sbjct: 155 GRTIIQRDNGYQPN----YHAVNIVGYSNAQ-GVDYWIVRNSWDTNWG 197
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A E+ + + L+ Q+L+DC A+ +GC G Y+Q G +Q E Y
Sbjct: 41 AATESAYLAYRNQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYIQHNGVVQ-ESYY 94
Query: 90 PFEGKQGACRYVLGQD--VVQVNDIFGLSGEKAMRHF--IHRKGPVVAYVNPALMINDYT 145
+ ++ +CR Q + I+ + K H V+ + Y
Sbjct: 95 RYVAREQSCRRPNAQRFGISNYCQIYPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYD 154
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G I P+ H V IVGY ++ GV YWIVRNSW WG
Sbjct: 155 GRTIIQRDNGYQPN----YHAVNIVGYSNAQ-GVDYWIVRNSWDTNWG 197
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 88/222 (39%), Gaps = 44/222 (19%)
Query: 16 ERGGAKNVCTPLHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFY 75
+GG + T A +E I G+L SLS Q+L+DC +YGC+GG +
Sbjct: 18 NQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER----RSYGCRGGFPLYALQ 73
Query: 76 YLQIAGGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKG--PVVA 133
Y+ +G + + YP+EG Q CR + D G + I R PV
Sbjct: 74 YVANSG-IHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSI 132
Query: 134 YVN-PALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRW 192
V +Y GG+ + P + + H V VGYG
Sbjct: 133 VVEAKGRAFQNYRGGIFA------GPCGTSIDHAVAAVGYGND----------------- 169
Query: 193 GYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT----NACGI 230
Y +++NSWG WG GY ++RG+ ACG+
Sbjct: 170 ---------YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 40/210 (19%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E I+ G L LS Q+L+DC + +YGC G+ ++ Y+ G+ Y
Sbjct: 32 ATVEGINKIKTGNLVELSEQELVDC----DLQSYGCNRGYQSTSLQYV-AQNGIHLRAKY 86
Query: 90 PFEGKQGACRY-VLGQDVVQVNDI--FGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P+ KQ CR +G V+ N + + E ++ + I + V + +Y G
Sbjct: 87 PYIAKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKG 146
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ +++ H V VGYG+S +++
Sbjct: 147 GIFEGSC------GTKVDHAVTAVGYGKSGGKGYI----------------------LIK 178
Query: 207 NSWGPRWGYAGYAYVERGT----NACGIER 232
NSWGP WG GY + R + CG+ R
Sbjct: 179 NSWGPGWGENGYIRIRRASGNSPGVCGVYR 208
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 118 EKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
EK + I++ GPV Y GV H+A H + I+G
Sbjct: 219 EKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDV-----MGGHAIRILG------ 267
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ GVPYW+V NSW WG G+ + RG N CGIE ++
Sbjct: 268 --------------WGIEN--GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIV 309
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 118 EKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
EK + I++ GPV Y GV H+A H + I+G
Sbjct: 163 EKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAG-----DVMGGHAIRILG------ 211
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ GVPYW+V NSW WG G+ + RG N CGIE ++
Sbjct: 212 --------------WGIEN--GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIV 253
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 27/118 (22%)
Query: 118 EKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
EK + I++ GPV Y GV H+A H + I+G
Sbjct: 157 EKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAG-----DVMGGHAIRILG------ 205
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ GVPYW+V NSW WG G+ + RG N CGIE ++
Sbjct: 206 --------------WGIEN--GVPYWLVANSWNADWGDNGFFKILRGENHCGIESEIV 247
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 193 GYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
G+ + GVPYW + NSW WG GY + RG++ CGIE
Sbjct: 288 GWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 326
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 193 GYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
G+ + GVPYW + NSW WG GY + RG++ CGIE
Sbjct: 265 GWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 303
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 193 GYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
G+ + GVPYW + NSW WG GY + RG++ CGIE
Sbjct: 266 GWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 304
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 78/167 (46%), Gaps = 15/167 (8%)
Query: 30 ALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
A +E IR G+L LS Q+L+DC ++GC+GG+ Y+ G+ Y
Sbjct: 138 ATVEGINKIRTGKLVELSEQELVDCER----RSHGCKGGYPPYALEYVA-KNGIHLRSKY 192
Query: 90 PFEGKQGACR-YVLGQDVVQVNDIFGL--SGEKAMRHFIHRKGPVVAYVNPALMINDYTG 146
P++ KQG CR +G +V+ + + + + E + + I ++ V + Y G
Sbjct: 193 PYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKG 252
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
G+ P +++ V VGYG+S +++NSWG WG
Sbjct: 253 GIFE------GPCGTKVDGAVTAVGYGKSGGKGYI-LIKNSWGTAWG 292
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 49/122 (40%), Gaps = 27/122 (22%)
Query: 118 EKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
EKA++ I + GPV A +Y G+ H + H + I+G
Sbjct: 159 EKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHIT-----GETLGGHAIRIIG------ 207
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILA 237
WG E++A PYW++ NSW WG GY + RG + C IE V
Sbjct: 208 --------------WGVENKA--PYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAG 251
Query: 238 AI 239
I
Sbjct: 252 RI 253
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 269 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 310
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 208 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 249
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 212 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 253
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 206 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 247
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 157 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 198
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE V+
Sbjct: 207 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVV 248
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE ++
Sbjct: 206 WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEIV 247
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE ++
Sbjct: 206 WGVEN--GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIV 247
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WG E+ G PYW+V NSW WG G+ + RG + CGIE ++
Sbjct: 158 WGVEN--GTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIESEIV 199
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 23/105 (21%)
Query: 119 KAMRHFIHRKGPVVAYVNPA-LMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
K ++ + KG V+AY+ +M +++G + + C + H V IVGYG
Sbjct: 158 KIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKN---LCGDDTA--DHAVNIVGYGN--- 209
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVE 222
NS G + YWIVRNSWGP WG GY V+
Sbjct: 210 ------YVNSEGEK--------KSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 23/105 (21%)
Query: 119 KAMRHFIHRKGPVVAYVNPA-LMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
K ++ + KG V+AY+ +M +++G + + C + H V IVGYG
Sbjct: 157 KIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQN---LCGDDTA--DHAVNIVGYGN--- 208
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVE 222
NS G + YWIVRNSWGP WG GY V+
Sbjct: 209 ------YVNSEGEK--------KSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 201 PYWIVRNSWGPRWGYAGYAYVERG-TNACGI 230
YW+V+NSWG WG GY + + N CGI
Sbjct: 3 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 33
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 180 PYWIVRNSWGPRWG 193
YW+V+NSWG WG
Sbjct: 3 KYWLVKNSWGEEWG 16
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 25 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 79
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 25 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 79
>pdb|2AEH|A Chain A, Focal Adhesion Kinase 1
pdb|2AEH|B Chain B, Focal Adhesion Kinase 1
Length = 369
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 25 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 79
>pdb|2AL6|A Chain A, Ferm Domain Of Focal Adhesion Kinase
pdb|2AL6|B Chain B, Ferm Domain Of Focal Adhesion Kinase
Length = 375
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 25 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 79
>pdb|2J0M|A Chain A, Crystal Structure A Two-Chain Complex Between The Ferm
And Kinase Domains Of Focal Adhesion Kinase
Length = 371
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 27 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 81
>pdb|3ZDT|A Chain A, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
Fak31-405 K216a, K218a, R221a, K222a
pdb|3ZDT|B Chain B, Crystal Structure Of Basic Patch Mutant Fak Ferm Domain
Fak31-405 K216a, K218a, R221a, K222a
Length = 377
Score = 33.5 bits (75), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 37 FIRHGELPSLS--VQQLIDCHNPENAANYGCQGGHAMS-TFYYLQIAGGLQSERD 88
IRHG+ + +Q+++DCH +N A YG + H S ++L + G+ + R+
Sbjct: 27 IIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNVRE 81
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 118 EKAMRHFIHR----KGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVI---- 169
EK + F+ R KG + ++ + +D TGG+ ++R+ + S LT+ ++
Sbjct: 56 EKLVTWFVERGYKIKGSISSHFH-----SDSTGGIEWLNSRSIPTYASELTNELLKKDGK 110
Query: 170 VGYGQSRAGVPYWIVRN 186
V S +GV YW+V+N
Sbjct: 111 VQATNSFSGVNYWLVKN 127
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 118 EKAMRHFIHR----KGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVI---- 169
EK + F+ R KG + ++ + +D TGG+ ++R+ + S LT+ ++
Sbjct: 57 EKLVTWFVERGYKIKGSISSHFH-----SDSTGGIEWLNSRSIPTYASELTNELLKKDGK 111
Query: 170 VGYGQSRAGVPYWIVRN 186
V S +GV YW+V+N
Sbjct: 112 VQATNSFSGVNYWLVKN 128
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 118 EKAMRHFIHR----KGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVI---- 169
EK + F+ R KG + ++ + +D TGG+ ++R+ + S LT+ ++
Sbjct: 57 EKLVTWFVERGYKIKGSISSHFH-----SDSTGGIEWLNSRSIPTYASELTNELLKKDGK 111
Query: 170 VGYGQSRAGVPYWIVRN 186
V S +GV YW+V+N
Sbjct: 112 VQATNSFSGVNYWLVKN 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,966,990
Number of Sequences: 62578
Number of extensions: 332104
Number of successful extensions: 1019
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 178
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)