Query psy7632
Match_columns 240
No_of_seqs 113 out of 1181
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 23:19:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 5.4E-54 1.2E-58 368.7 17.4 199 11-240 169-372 (372)
2 cd02248 Peptidase_C1A Peptidas 100.0 7.8E-51 1.7E-55 338.9 22.1 204 3-237 3-210 (210)
3 cd02621 Peptidase_C1A_Cathepsi 100.0 2.4E-50 5.2E-55 344.0 21.9 209 2-238 3-241 (243)
4 cd02698 Peptidase_C1A_Cathepsi 100.0 9.1E-50 2E-54 339.6 22.1 205 2-238 3-237 (239)
5 PTZ00021 falcipain-2; Provisio 100.0 8.8E-50 1.9E-54 365.3 21.0 206 11-240 278-489 (489)
6 cd02620 Peptidase_C1A_Cathepsi 100.0 9.7E-50 2.1E-54 338.9 19.8 195 10-236 15-235 (236)
7 PTZ00203 cathepsin L protease; 100.0 2.3E-49 4.9E-54 352.2 21.8 194 12-239 139-340 (348)
8 KOG1543|consensus 100.0 1.3E-48 2.8E-53 344.9 20.4 197 11-238 122-323 (325)
9 PTZ00200 cysteine proteinase; 100.0 2.3E-48 4.9E-53 354.5 21.0 196 11-239 246-445 (448)
10 PF00112 Peptidase_C1: Papain 100.0 1.7E-48 3.7E-53 325.5 16.6 206 3-238 4-219 (219)
11 PTZ00364 dipeptidyl-peptidase 100.0 6E-46 1.3E-50 343.7 22.4 200 11-237 220-457 (548)
12 PTZ00049 cathepsin C-like prot 100.0 1.8E-45 3.9E-50 344.3 22.5 203 11-240 397-677 (693)
13 cd02619 Peptidase_C1 C1 Peptid 100.0 1.9E-41 4E-46 283.5 21.0 190 11-225 9-213 (223)
14 PTZ00462 Serine-repeat antigen 100.0 1.9E-40 4.2E-45 318.5 21.6 208 7-239 540-781 (1004)
15 smart00645 Pept_C1 Papain fami 100.0 4.9E-40 1.1E-44 267.1 17.4 165 3-235 4-171 (174)
16 KOG1544|consensus 100.0 2.7E-35 6E-40 250.9 6.4 203 12-237 224-458 (470)
17 COG4870 Cysteine protease [Pos 99.9 9.4E-25 2E-29 190.1 8.5 189 11-225 111-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 4.4E-21 9.5E-26 174.6 13.3 188 9-224 52-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.6 1.9E-14 4.2E-19 131.3 14.5 191 9-224 53-400 (438)
20 COG3579 PepC Aminopeptidase C 98.5 6.2E-07 1.3E-11 78.3 7.9 41 162-222 360-400 (444)
21 PF13529 Peptidase_C39_2: Pept 97.5 0.0011 2.4E-08 50.6 9.7 47 117-174 88-134 (144)
22 PF05543 Peptidase_C47: Stapho 96.5 0.042 9.2E-07 44.2 10.5 133 13-225 14-155 (175)
23 KOG4128|consensus 96.1 0.0051 1.1E-07 54.1 3.4 86 117-222 305-412 (457)
24 PF14399 Transpep_BrtH: NlpC/p 93.8 0.21 4.5E-06 43.8 6.8 47 117-174 77-123 (317)
25 PF09778 Guanylate_cyc_2: Guan 93.2 0.46 1E-05 39.6 7.4 56 117-174 112-171 (212)
26 PF12385 Peptidase_C70: Papain 91.8 3.3 7.3E-05 32.9 10.2 38 117-174 97-134 (166)
27 COG4990 Uncharacterized protei 89.4 0.95 2.1E-05 36.7 5.3 41 113-174 116-158 (195)
28 cd02549 Peptidase_C39A A sub-f 85.4 2.9 6.4E-05 31.6 6.0 34 121-173 70-103 (141)
29 cd00044 CysPc Calpains, domain 80.6 5.5 0.00012 35.2 6.5 43 161-225 233-303 (315)
30 smart00230 CysPc Calpain-like 53.6 53 0.0011 29.1 6.9 14 161-174 225-238 (318)
31 PF00648 Peptidase_C2: Calpain 53.4 13 0.00029 32.3 3.0 14 161-174 211-224 (298)
32 PF07157 DNA_circ_N: DNA circu 41.8 53 0.0012 23.7 4.1 46 87-132 31-80 (93)
33 PF01640 Peptidase_C10: Peptid 41.3 1.2E+02 0.0026 24.6 6.8 34 118-174 140-173 (192)
34 KOG4621|consensus 30.0 2.1E+02 0.0045 22.1 5.8 55 117-174 58-122 (167)
35 cd02621 Peptidase_C1A_Cathepsi 29.3 56 0.0012 27.5 3.0 22 181-207 205-226 (243)
36 KOG1542|consensus 28.3 44 0.00096 30.1 2.2 23 180-207 333-355 (372)
37 cd02620 Peptidase_C1A_Cathepsi 27.8 51 0.0011 27.6 2.5 21 181-206 201-221 (236)
38 PF05385 Adeno_E4: Mastadenovi 27.7 44 0.00096 24.8 1.8 48 7-55 4-54 (109)
39 cd02698 Peptidase_C1A_Cathepsi 27.6 56 0.0012 27.5 2.7 21 181-206 196-216 (239)
No 1
>KOG1542|consensus
Probab=100.00 E-value=5.4e-54 Score=368.74 Aligned_cols=199 Identities=39% Similarity=0.756 Sum_probs=181.7
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCcccCCCc
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~y 89 (240)
++|+++||.|++ ||| ++++++|.++.+++|++++||||+|+||+.. +.+|+||.+.+|++|+.+.+|+..|.+|
T Consensus 169 VTpVKnQG~CGS-CWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~----d~gC~GGl~~nA~~~~~~~gGL~~E~dY 243 (372)
T KOG1542|consen 169 VTPVKNQGMCGS-CWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSC----DNGCNGGLMDNAFKYIKKAGGLEKEKDY 243 (372)
T ss_pred ccccccCCcCcc-hhhhhhhhhhhhHHHhhcCcccccchhhhhcccCc----CCcCCCCChhHHHHHHHHhCCccccccC
Confidence 456777777666 665 8899999999999999999999999999987 8999999999999998888899999999
Q ss_pred CCCCCCC-cccccCCCceeeeceeEEeC-cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCC-CCCCCCCCCCCcE
Q psy7632 90 PFEGKQG-ACRYVLGQDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDA-RACNPHPSRLTHM 166 (240)
Q Consensus 90 PY~~~~~-~c~~~~~~~~~~i~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~-~~~~~~~~~~~Ha 166 (240)
||.+... .|........+.|.++..++ ++++|.+.|.+.|||+|+|++ ..++.|.+|| ..+. ..|++.. ++|+
T Consensus 244 PY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa-~~mQ~YrgGV-~~P~~~~Cs~~~--~~Ha 319 (372)
T KOG1542|consen 244 PYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINA-KPMQFYRGGV-SCPSKYICSPKL--LNHA 319 (372)
T ss_pred CccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEch-HHHHHhcccc-cCCCcccCCccc--cCce
Confidence 9999887 99999999999999999999 999999999999999999996 8899999999 6642 3688877 9999
Q ss_pred EEEEEeccccCCCcceeecCCCCCCCCCCCCC-CCCEEEEEcCCCcccCcCceEEEEcCCCccccccceeEEEeC
Q psy7632 167 VVIVGYGQSRAGVPYWIVRNSWGPRWGYESRA-GVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILAAIE 240 (240)
Q Consensus 167 v~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~~~~ 240 (240)
|+|||||. . . .++|||||||||+.||++||+||.||.|.|||++.++.+++.
T Consensus 320 VLlvGyG~-~---------------------g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~v~ 372 (372)
T KOG1542|consen 320 VLLVGYGS-S---------------------GYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAAVN 372 (372)
T ss_pred EEEEeecC-C---------------------CCCCceEEEECCccccccccceEEEeccccccccccchhhhhcC
Confidence 99999999 4 3 678999999999999999999999999999999999888763
No 2
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=7.8e-51 Score=338.86 Aligned_cols=204 Identities=34% Similarity=0.714 Sum_probs=178.4
Q ss_pred cccCcccc-CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHh
Q psy7632 3 RFEESSVP-IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIA 80 (240)
Q Consensus 3 ~~~~~~~~-~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~ 80 (240)
+|+.+... ++|+++|+.|++ ||| +++++||++++++++..++||+|+|++|... .+.+|+||++..||+++.++
T Consensus 3 ~~d~r~~~~~~~v~dQg~cgs-CwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~---~~~gC~GG~~~~a~~~~~~~ 78 (210)
T cd02248 3 SVDWREKGAVTPVKDQGSCGS-CWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS---GNNGCNGGNPDNAFEYVKNG 78 (210)
T ss_pred cccCCcCCCCCCCccCCCCcc-hHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCC---CCCCCCCCCHHHhHHHHHHC
Confidence 45554443 688888886555 766 7899999999999999999999999999975 36899999999999988866
Q ss_pred CCcccCCCcCCCCCCCcccccCCCceeeeceeEEeC--cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCC
Q psy7632 81 GGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGLS--GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNP 158 (240)
Q Consensus 81 ~Gi~~e~~yPY~~~~~~c~~~~~~~~~~i~~~~~i~--~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~ 158 (240)
|+++|++|||......|+.......+++++|..+. +++.||++|+++|||+++|.+.++|+.|++|| |.. +.+..
T Consensus 79 -Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Gi-y~~-~~~~~ 155 (210)
T cd02248 79 -GLASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGI-YSG-PCCSN 155 (210)
T ss_pred -CcCccccCCccCCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCc-eeC-CCCCC
Confidence 99999999999988899987777889999999998 58999999999999999999999999999999 876 34433
Q ss_pred CCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCCCccccccceeEE
Q psy7632 159 HPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILA 237 (240)
Q Consensus 159 ~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 237 (240)
.. ++|||+|||||+ + .+.+|||||||||++||++||+||+++.|.|||++++.+|
T Consensus 156 ~~--~~Hav~iVGy~~-~---------------------~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 156 TN--LNHAVLLVGYGT-E---------------------NGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred Cc--CCEEEEEEEEee-c---------------------CCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 33 899999999999 6 5678999999999999999999999999999999888775
No 3
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=2.4e-50 Score=344.02 Aligned_cols=209 Identities=30% Similarity=0.555 Sum_probs=172.1
Q ss_pred ccccCcccc-----CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCC------CCCCCHHHHhhcCCCCCCCCCCCCCCc
Q psy7632 2 KRFEESSVP-----IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGE------LPSLSVQQLIDCHNPENAANYGCQGGH 69 (240)
Q Consensus 2 ~~~~~~~~~-----~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~------~~~lS~q~l~~c~~~~~~~~~gc~GG~ 69 (240)
+.|+.+... ++|+++|+.|++ ||| +++++||+++.++.++ .+.||+|+|++|+.. +++|+||+
T Consensus 3 ~~fDwr~~~~~~~~v~~v~dQg~CGs-CwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~----~~GC~GG~ 77 (243)
T cd02621 3 KSFDWGDVNNGFNYVSPVRNQGGCGS-CYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQY----SQGCDGGF 77 (243)
T ss_pred CcccccccCCCCcccccCCCCCcCcc-HHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCC----CCCCCCCC
Confidence 356555554 678888887655 776 7799999999998876 789999999999865 78999999
Q ss_pred hhHHHHHHHHhCCcccCCCcCCCC-CCCcccccC-CCceeeeceeEEe------CcHHHHHHHHHhCCCEEEEEecCccc
Q psy7632 70 AMSTFYYLQIAGGLQSERDYPFEG-KQGACRYVL-GQDVVQVNDIFGL------SGEKAMRHFIHRKGPVVAYVNPALMI 141 (240)
Q Consensus 70 ~~~a~~~~~~~~Gi~~e~~yPY~~-~~~~c~~~~-~~~~~~i~~~~~i------~~~~~ik~~l~~~gPV~v~~~~~~~f 141 (240)
+..|++|+.++ |+++|++|||.. ....|+... ...++++..|..+ .++++||++|+++|||+++|++.++|
T Consensus 78 ~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F 156 (243)
T cd02621 78 PFLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDF 156 (243)
T ss_pred HHHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccc
Confidence 99999999877 999999999998 677898654 3444555555544 38899999999999999999999999
Q ss_pred ccCCCCcccCCCCC----CCCC------CCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCc
Q psy7632 142 NDYTGGVISHDARA----CNPH------PSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGP 211 (240)
Q Consensus 142 ~~y~~gi~~~~~~~----~~~~------~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~ 211 (240)
+.|++|| |.. .. |... ...++|||+|||||+ +. .++.+|||||||||+
T Consensus 157 ~~Y~~GI-y~~-~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~-~~-------------------~~g~~YWiirNSWG~ 214 (243)
T cd02621 157 DFYKEGV-YHH-TDNDEVSDGDNDNFNPFELTNHAVLLVGWGE-DE-------------------IKGEKYWIVKNSWGS 214 (243)
T ss_pred cccCCeE-ECc-CCcccccccccccccCcccCCeEEEEEEeec-cC-------------------CCCCcEEEEEcCCCC
Confidence 9999999 876 32 4321 113799999999998 50 026789999999999
Q ss_pred ccCcCceEEEEcCCCccccccceeEEE
Q psy7632 212 RWGYAGYAYVERGTNACGIERVVILAA 238 (240)
Q Consensus 212 ~WG~~Gy~~i~~~~~~cgi~~~~~~~~ 238 (240)
+||++|||||.|+.|.|||++++++++
T Consensus 215 ~WGe~Gy~~i~~~~~~cgi~~~~~~~~ 241 (243)
T cd02621 215 SWGEKGYFKIRRGTNECGIESQAVFAY 241 (243)
T ss_pred CCCcCCeEEEecCCcccCcccceEeec
Confidence 999999999999999999999998764
No 4
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=9.1e-50 Score=339.64 Aligned_cols=205 Identities=27% Similarity=0.472 Sum_probs=170.8
Q ss_pred ccccCcccc----CCCCCCCC--CCCCchHH-HHHHHHHHHHHHHhCC---CCCCCHHHHhhcCCCCCCCCCCCCCCchh
Q psy7632 2 KRFEESSVP----IPGLGERG--GAKNVCTP-LHAALLEAQFFIRHGE---LPSLSVQQLIDCHNPENAANYGCQGGHAM 71 (240)
Q Consensus 2 ~~~~~~~~~----~~~~~~q~--~~~~~C~a-aa~~~le~~~~~~~~~---~~~lS~q~l~~c~~~~~~~~~gc~GG~~~ 71 (240)
+.|+.+... ++|+++|+ +.|++||| +++++||+++.++++. .+.||+|+|++|+. +.+|+||++.
T Consensus 3 ~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-----~~gC~GG~~~ 77 (239)
T cd02698 3 KSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-----GGSCHGGDPG 77 (239)
T ss_pred CCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-----CCCccCcCHH
Confidence 345555444 67777776 25566877 7799999999998763 57999999999985 4799999999
Q ss_pred HHHHHHHHhCCcccCCCcCCCCCCCccccc---------------CCCceeeeceeEEeCcHHHHHHHHHhCCCEEEEEe
Q psy7632 72 STFYYLQIAGGLQSERDYPFEGKQGACRYV---------------LGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN 136 (240)
Q Consensus 72 ~a~~~~~~~~Gi~~e~~yPY~~~~~~c~~~---------------~~~~~~~i~~~~~i~~~~~ik~~l~~~gPV~v~~~ 136 (240)
.|++|+.++ |+++|++|||......|+.. .....+++++|..+.+++.||++|.++|||+++|.
T Consensus 78 ~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i~ 156 (239)
T cd02698 78 GVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIM 156 (239)
T ss_pred HHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEEEE
Confidence 999999987 99999999999876666531 11234678888888788999999999999999999
Q ss_pred cCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcC
Q psy7632 137 PALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYA 216 (240)
Q Consensus 137 ~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~ 216 (240)
++++|+.|++|| |+. ..+ ... ++|||+|||||+++ ++.+|||||||||++||++
T Consensus 157 ~~~~f~~Y~~GI-y~~-~~~-~~~--~~HaV~IVGyG~~~---------------------~g~~YWiikNSWG~~WGe~ 210 (239)
T cd02698 157 ATEALENYTGGV-YKE-YVQ-DPL--INHIISVAGWGVDE---------------------NGVEYWIVRNSWGEPWGER 210 (239)
T ss_pred ecccccccCCeE-Ecc-CCC-CCc--CCeEEEEEEEEecC---------------------CCCEEEEEEcCCCcccCcC
Confidence 988999999999 876 344 333 79999999999832 3778999999999999999
Q ss_pred ceEEEEcCC-----CccccccceeEEE
Q psy7632 217 GYAYVERGT-----NACGIERVVILAA 238 (240)
Q Consensus 217 Gy~~i~~~~-----~~cgi~~~~~~~~ 238 (240)
|||||+|+. |.|+||+.+++++
T Consensus 211 Gy~~i~rg~~~~~~~~~~i~~~~~~~~ 237 (239)
T cd02698 211 GWFRIVTSSYKGARYNLAIEEDCAWAD 237 (239)
T ss_pred ceEEEEccCCcccccccccccceEEEe
Confidence 999999999 9999999999986
No 5
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=8.8e-50 Score=365.31 Aligned_cols=206 Identities=27% Similarity=0.522 Sum_probs=173.7
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCcccCCCc
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~y 89 (240)
++|+.+|+.| +|||| ++++++|+++++++++.++||+|+|+||+.. +.||+||++..|++|+.+++|+++|++|
T Consensus 278 VtpVKdQG~C-GSCWAFAa~~alEs~~~I~~g~~v~LSeQqLVDCs~~----n~GC~GG~~~~Af~yi~~~gGl~tE~~Y 352 (489)
T PTZ00021 278 VTPVKDQKNC-GSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFK----NNGCYGGLIPNAFEDMIELGGLCSEDDY 352 (489)
T ss_pred CCCccccccc-ccHHHHHHHHHHHHHHHHHcCCCcccCHHHHhhhccC----CCCCCCcchHhhhhhhhhccccCccccc
Confidence 3577888765 55776 8899999999999999999999999999966 7899999999999999888899999999
Q ss_pred CCCCC-CCcccccCCCceeeeceeEEeCcHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEE
Q psy7632 90 PFEGK-QGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVV 168 (240)
Q Consensus 90 PY~~~-~~~c~~~~~~~~~~i~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~ 168 (240)
||.+. .+.|+.......+++++|..++ .+.||++|+..|||+++|.++++|+.|++|| |.. .|... .+|||+
T Consensus 353 PY~~~~~~~C~~~~~~~~~~i~~y~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGI-y~~--~C~~~---~nHAVl 425 (489)
T PTZ00021 353 PYVSDTPELCNIDRCKEKYKIKSYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGI-FDG--ECGEE---PNHAVI 425 (489)
T ss_pred CccCCCCCccccccccccceeeeEEEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCc-CCC--CCCCc---cceEEE
Confidence 99987 4789866555678999999886 6789999998999999999988999999999 876 57653 699999
Q ss_pred EEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCC----CccccccceeEEEeC
Q psy7632 169 IVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT----NACGIERVVILAAIE 240 (240)
Q Consensus 169 IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~----~~cgi~~~~~~~~~~ 240 (240)
|||||. +.+... ....+.+.+|||||||||+.||++|||||.|+. |.|||.+.+.||++|
T Consensus 426 IVGYG~-e~~~~~-----------~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 426 LVGYGM-EEIYNS-----------DTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLIE 489 (489)
T ss_pred EEEecC-cCCccc-----------ccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEecC
Confidence 999997 411000 000012357999999999999999999999985 589999999999987
No 6
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=9.7e-50 Score=338.87 Aligned_cols=195 Identities=28% Similarity=0.523 Sum_probs=164.8
Q ss_pred cCCCCCCCCCCCCchHH-HHHHHHHHHHHHHhC--CCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCcccC
Q psy7632 10 PIPGLGERGGAKNVCTP-LHAALLEAQFFIRHG--ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSE 86 (240)
Q Consensus 10 ~~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~--~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e 86 (240)
.++|+.+|+.|++ ||| +++++||+++.++++ +.+.||+|+|++|+.. ++.+|+||++..||+|++++ |+++|
T Consensus 15 ~v~~v~dQg~CGs-CwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~---~~~gC~GG~~~~a~~~i~~~-G~~~e 89 (236)
T cd02620 15 SIGEIRDQGNCGS-CWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSG---CGDGCNGGYPDAAWKYLTTT-GVVTG 89 (236)
T ss_pred CccccCCcccchh-HHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCC---CCCCCCCCCHHHHHHHHHhc-CCCcC
Confidence 4678888887644 776 889999999999888 7899999999999875 36899999999999999977 99999
Q ss_pred CCcCCCCCCCc------------------ccccC----CCceeeeceeEEeC-cHHHHHHHHHhCCCEEEEEecCccccc
Q psy7632 87 RDYPFEGKQGA------------------CRYVL----GQDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMIND 143 (240)
Q Consensus 87 ~~yPY~~~~~~------------------c~~~~----~~~~~~i~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~ 143 (240)
++|||.+.... |+... ....+++..+..+. ++++||++|+++|||+++|.++++|+.
T Consensus 90 ~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~ 169 (236)
T cd02620 90 GCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY 169 (236)
T ss_pred CEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhh
Confidence 99999876532 43221 12245666777776 789999999999999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEc
Q psy7632 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER 223 (240)
Q Consensus 144 y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~ 223 (240)
|++|| |.. .+.... ++|||+|||||+ + ++.+|||||||||+.||++|||||+|
T Consensus 170 Y~~Gi-y~~--~~~~~~--~~HaV~iVGyg~-~---------------------~g~~YWivrNSWG~~WGe~Gy~ri~~ 222 (236)
T cd02620 170 YKSGV-YQH--TSGKQL--GGHAVKIIGWGV-E---------------------NGVPYWLAANSWGTDWGENGYFRILR 222 (236)
T ss_pred cCCcE-Eee--cCCCCc--CCeEEEEEEEec-c---------------------CCeeEEEEEeCCCCCCCCCcEEEEEc
Confidence 99999 875 344444 799999999998 5 67789999999999999999999999
Q ss_pred CCCccccccceeE
Q psy7632 224 GTNACGIERVVIL 236 (240)
Q Consensus 224 ~~~~cgi~~~~~~ 236 (240)
+.|.|||+++++.
T Consensus 223 ~~~~cgi~~~~~~ 235 (236)
T cd02620 223 GSNECGIESEVVA 235 (236)
T ss_pred cCcccccccceec
Confidence 9999999999875
No 7
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=2.3e-49 Score=352.17 Aligned_cols=194 Identities=28% Similarity=0.602 Sum_probs=167.7
Q ss_pred CCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHh--CCcccCCC
Q psy7632 12 PGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIA--GGLQSERD 88 (240)
Q Consensus 12 ~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~--~Gi~~e~~ 88 (240)
.|+++|+. |+|||| ++++++|+++.+++++.++||+|+|+||+.. +.||+||++..|++|+.++ +|+++|++
T Consensus 139 tpVkdQg~-CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~~----~~GC~GG~~~~a~~yi~~~~~ggi~~e~~ 213 (348)
T PTZ00203 139 TPVKNQGA-CGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV----DNGCGGGLMLQAFEWVLRNMNGTVFTEKS 213 (348)
T ss_pred CCccccCC-CccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccCC----CCCCCCCCHHHHHHHHHHhcCCCCCcccc
Confidence 46777775 555776 8899999999999999999999999999975 7899999999999999865 57899999
Q ss_pred cCCCCCCC---cccccCC-CceeeeceeEEeC-cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCC
Q psy7632 89 YPFEGKQG---ACRYVLG-QDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRL 163 (240)
Q Consensus 89 yPY~~~~~---~c~~~~~-~~~~~i~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~ 163 (240)
|||.+... .|..... ...+++++|..+. +++.||++|++.|||+++|++ .+|+.|++|| |.. |.... .
T Consensus 214 YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a-~~f~~Y~~GI-y~~---c~~~~--~ 286 (348)
T PTZ00203 214 YPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDA-SSFMSYHSGV-LTS---CIGEQ--L 286 (348)
T ss_pred CCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEh-hhhcCccCce-eec---cCCCC--C
Confidence 99997765 6864332 2356788998887 889999999999999999998 4899999999 853 65554 7
Q ss_pred CcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCCCccccccceeEEEe
Q psy7632 164 THMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILAAI 239 (240)
Q Consensus 164 ~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~~~ 239 (240)
+|||+|||||. + ++.+|||||||||++||++|||||.|+.|.|||+++++.+.|
T Consensus 287 nHaVliVGYG~-~---------------------~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~ 340 (348)
T PTZ00203 287 NHGVLLVGYNM-T---------------------GEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHV 340 (348)
T ss_pred CeEEEEEEEec-C---------------------CCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEEec
Confidence 99999999998 6 677899999999999999999999999999999999988765
No 8
>KOG1543|consensus
Probab=100.00 E-value=1.3e-48 Score=344.89 Aligned_cols=197 Identities=33% Similarity=0.681 Sum_probs=177.7
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhC-CCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCccc-CC
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHG-ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQS-ER 87 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~-~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~-e~ 87 (240)
++|+++|+.|++ ||| +|+++||.++.|+++ .++.||+|+|+||... .+.||+||.+..|++|+.++ |+++ +.
T Consensus 122 ~~~vkdQg~Cgs-CWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~---~~~GC~GG~~~~A~~yi~~~-G~~t~~~ 196 (325)
T KOG1543|consen 122 TPPVKDQGSCGS-CWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGE---CGDGCNGGEPKNAFKYIKKN-GGVTECE 196 (325)
T ss_pred CCCcCCCCcCcc-hHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCC---CCCCcCCCCHHHHHHHHHHh-CCCCCCc
Confidence 455777776655 665 889999999999999 8999999999999987 37899999999999999999 6666 99
Q ss_pred CcCCCCCCCcccccCCCceeeeceeEEeC-cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcE
Q psy7632 88 DYPFEGKQGACRYVLGQDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHM 166 (240)
Q Consensus 88 ~yPY~~~~~~c~~~~~~~~~~i~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Ha 166 (240)
+|||.+...+|........+.+.+++.++ ++++|+++|+.+|||.++|.+..+|+.|++|| |.. +.|.... .+||
T Consensus 197 ~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GV-y~~-~~~~~~~--~~Ha 272 (325)
T KOG1543|consen 197 NYPYIGKDGTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGV-YAE-EKGDDKE--GDHA 272 (325)
T ss_pred CCCCcCCCCCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCce-EeC-CCCCCCC--CCce
Confidence 99999999999988877888899999888 99999999999999999999999999999999 988 5555543 8999
Q ss_pred EEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCCCccccccceeE-EE
Q psy7632 167 VVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVIL-AA 238 (240)
Q Consensus 167 v~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~-~~ 238 (240)
|+|||||. . ++.+|||||||||+.||++|||||.|+.+.|+|++.+.| |+
T Consensus 273 v~iVGyG~-~---------------------~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 273 VLIVGYGT-G---------------------DGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASYGPI 323 (325)
T ss_pred EEEEEEcC-C---------------------CCceeEEEEcCCCCCcccCceEEEecCCCchhhhcccccCCC
Confidence 99999999 7 778999999999999999999999999999999999998 54
No 9
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=2.3e-48 Score=354.55 Aligned_cols=196 Identities=28% Similarity=0.573 Sum_probs=167.2
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCcccCCCc
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~y 89 (240)
++|+++|+..|+|||| ++++++|+++.++++..++||+|+|+||+.. +.||+||++..|++|+.++ |+++|++|
T Consensus 246 vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~~~~~~LSeQqLvDC~~~----~~GC~GG~~~~A~~yi~~~-Gi~~e~~Y 320 (448)
T PTZ00200 246 VTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTK----SQGCSGGYPDTALEYVKNK-GLSSSSDV 320 (448)
T ss_pred CCCcccCCCccchHHHHhHHHHHHHHHHHhcCCCeecCHHHHhhccCc----cCCCCCCcHHHHHHHHhhc-CccccccC
Confidence 3577888735566877 8899999999999999999999999999975 7899999999999999876 99999999
Q ss_pred CCCCCCCcccccCCCceeeeceeEEeCcHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEE
Q psy7632 90 PFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVI 169 (240)
Q Consensus 90 PY~~~~~~c~~~~~~~~~~i~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~I 169 (240)
||.+..+.|.... ...++|.+|..+...+.++++|. .|||+++|.++++|+.|++|| |.. .|... .+|||+|
T Consensus 321 PY~~~~~~C~~~~-~~~~~i~~y~~~~~~~~l~~~l~-~GPV~v~i~~~~~f~~Yk~GI-y~~--~C~~~---~nHaV~l 392 (448)
T PTZ00200 321 PYLAKDGKCVVSS-TKKVYIDSYLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGV-YNG--ECGKS---LNHAVLL 392 (448)
T ss_pred CCCCCCCCCcCCC-CCeeEecceEecCHHHHHHHHHh-cCCEEEEeecccccccCCCCc-ccc--ccCCC---CcEEEEE
Confidence 9999999998644 34567888887665566666664 799999999988999999999 876 57653 7999999
Q ss_pred EEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcC---CCccccccceeEEEe
Q psy7632 170 VGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERG---TNACGIERVVILAAI 239 (240)
Q Consensus 170 VGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~---~~~cgi~~~~~~~~~ 239 (240)
||||.++ ..+.+|||||||||++||++||+||.|+ .|.|||++.+.+|++
T Consensus 393 VGyG~d~--------------------~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 393 VGEGYDE--------------------KTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred EEecccC--------------------CCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence 9998622 0467899999999999999999999996 489999999999986
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=1.7e-48 Score=325.48 Aligned_cols=206 Identities=31% Similarity=0.628 Sum_probs=172.8
Q ss_pred cccCccc--cCCCCCCCCCCCCchHH-HHHHHHHHHHHHHh-CCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHH
Q psy7632 3 RFEESSV--PIPGLGERGGAKNVCTP-LHAALLEAQFFIRH-GELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQ 78 (240)
Q Consensus 3 ~~~~~~~--~~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~-~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~ 78 (240)
.|+.+.. .++|+++|+.|++ ||| +++++||++++++. ...++||+|+|++|.... +.+|+||++..|++++.
T Consensus 4 ~~D~r~~~~~~~~v~dQg~~gs-Cwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~---~~~c~gg~~~~a~~~~~ 79 (219)
T PF00112_consen 4 SFDWRDKGGRITPVRDQGSCGS-CWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKY---NKGCDGGSPFDALKYIK 79 (219)
T ss_dssp SEEGGGTTTCSG---BTTSSBT-HHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGT---SSTTBBBEHHHHHHHHH
T ss_pred CEecccCCCCcCccccCCcccc-cccchhccceecccccccccccccccccccccccccc---ccccccCcccccceeec
Confidence 3444553 3788999987755 666 77999999999999 788999999999999832 67999999999999999
Q ss_pred HhCCcccCCCcCCCCCC-CcccccCCCc-eeeeceeEEeC--cHHHHHHHHHhCCCEEEEEecCc-ccccCCCCcccCCC
Q psy7632 79 IAGGLQSERDYPFEGKQ-GACRYVLGQD-VVQVNDIFGLS--GEKAMRHFIHRKGPVVAYVNPAL-MINDYTGGVISHDA 153 (240)
Q Consensus 79 ~~~Gi~~e~~yPY~~~~-~~c~~~~~~~-~~~i~~~~~i~--~~~~ik~~l~~~gPV~v~~~~~~-~f~~y~~gi~~~~~ 153 (240)
++.|+++|++|||.... ..|....... .+++.+|..+. ++++||++|+++|||++.+.+.+ +|..|++|| |..
T Consensus 80 ~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi-~~~- 157 (219)
T PF00112_consen 80 NNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGI-YDP- 157 (219)
T ss_dssp HHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSE-ECS-
T ss_pred ccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeecccccccccccee-eec-
Confidence 84599999999999887 6898765544 47899999998 59999999999999999999988 599999999 887
Q ss_pred CCCCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCCC-cccccc
Q psy7632 154 RACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTN-ACGIER 232 (240)
Q Consensus 154 ~~~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~~-~cgi~~ 232 (240)
+.+.... ++|||+|||||+ + .+++|||||||||++||++||+||+|+.+ .||||+
T Consensus 158 ~~~~~~~--~~Hav~iVGy~~-~---------------------~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~ 213 (219)
T PF00112_consen 158 PDCSNES--GGHAVLIVGYDD-E---------------------NGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIES 213 (219)
T ss_dssp TSSSSSS--EEEEEEEEEEEE-E---------------------TTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTS
T ss_pred ccccccc--cccccccccccc-c---------------------cceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCc
Confidence 4565555 899999999999 6 67899999999999999999999999986 999999
Q ss_pred ceeEEE
Q psy7632 233 VVILAA 238 (240)
Q Consensus 233 ~~~~~~ 238 (240)
+++||+
T Consensus 214 ~~~~~~ 219 (219)
T PF00112_consen 214 QAVYPI 219 (219)
T ss_dssp SEEEEE
T ss_pred eeeecC
Confidence 999996
No 11
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=6e-46 Score=343.66 Aligned_cols=200 Identities=24% Similarity=0.451 Sum_probs=162.0
Q ss_pred CCCCCCCCCC--CCchHH-HHHHHHHHHHHHHhC------CCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhC
Q psy7632 11 IPGLGERGGA--KNVCTP-LHAALLEAQFFIRHG------ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG 81 (240)
Q Consensus 11 ~~~~~~q~~~--~~~C~a-aa~~~le~~~~~~~~------~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~ 81 (240)
++|+++|+.. |++||| +++++||++++++++ +.+.||+|+|+||+.. ++||+||++..|++|+.++
T Consensus 220 VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~----n~GCdGG~p~~A~~yi~~~- 294 (548)
T PTZ00364 220 LPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQY----GQGCAGGFPEEVGKFAETF- 294 (548)
T ss_pred CCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCC----CCCCCCCcHHHHHHHHHhC-
Confidence 5677777661 455776 789999999999984 4689999999999965 7899999999999999877
Q ss_pred CcccCCCc--CCCCCCC---cccccCCCceeeecee------EEeC-cHHHHHHHHHhCCCEEEEEecCcccccCCCCcc
Q psy7632 82 GLQSERDY--PFEGKQG---ACRYVLGQDVVQVNDI------FGLS-GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149 (240)
Q Consensus 82 Gi~~e~~y--PY~~~~~---~c~~~~~~~~~~i~~~------~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~ 149 (240)
||++|++| ||.+... .|+.......++++++ +.+. ++++||++|+.+|||+++|+++++|+.|++|+
T Consensus 295 GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGi- 373 (548)
T PTZ00364 295 GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENS- 373 (548)
T ss_pred CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCC-
Confidence 99999999 9987654 5876555455555444 3333 78899999999999999999998999999998
Q ss_pred cCCC----C---CCCC-C-------CCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCc--c
Q psy7632 150 SHDA----R---ACNP-H-------PSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGP--R 212 (240)
Q Consensus 150 ~~~~----~---~~~~-~-------~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~--~ 212 (240)
|... . .|.. . ....+|||+|||||.++ ++.+|||||||||+ +
T Consensus 374 y~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de---------------------~G~~YWIVKNSWGt~~~ 432 (548)
T PTZ00364 374 TEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDE---------------------NGGDYWLVLDPWGSRRS 432 (548)
T ss_pred ccCeeccccccccccccCCcccccccccCCeEEEEEEecccC---------------------CCceEEEEECCCCCCCC
Confidence 7520 0 1110 0 12379999999999744 56789999999999 9
Q ss_pred cCcCceEEEEcCCCccccccceeEE
Q psy7632 213 WGYAGYAYVERGTNACGIERVVILA 237 (240)
Q Consensus 213 WG~~Gy~~i~~~~~~cgi~~~~~~~ 237 (240)
||++|||||.|+.|.||||++++.+
T Consensus 433 WGE~GYfRI~RG~N~CGIes~~v~~ 457 (548)
T PTZ00364 433 WCDGGTRKIARGVNAYNIESEVVVM 457 (548)
T ss_pred cccCCeEEEEcCCCcccccceeeee
Confidence 9999999999999999999999865
No 12
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=1.8e-45 Score=344.34 Aligned_cols=203 Identities=27% Similarity=0.487 Sum_probs=163.3
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCC----------CCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHH
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGEL----------PSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQI 79 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~----------~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~ 79 (240)
+.|+.+|+.| ++||| +++++||++++|+.++. ..||+|+|++|+.. ++||+||++..|++|+.+
T Consensus 397 vtpVkdQG~C-GSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~----nqGC~GG~~~~A~kya~~ 471 (693)
T PTZ00049 397 EYDVTNQLLC-GSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFY----DQGCNGGFPYLVSKMAKL 471 (693)
T ss_pred ccCCCCCccC-cHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCC----CCCcCCCcHHHHHHHHHH
Confidence 4677788765 55776 78999999999987431 27999999999975 789999999999999987
Q ss_pred hCCcccCCCcCCCCCCCcccccCC---------------------------------------CceeeeceeEEe-----
Q psy7632 80 AGGLQSERDYPFEGKQGACRYVLG---------------------------------------QDVVQVNDIFGL----- 115 (240)
Q Consensus 80 ~~Gi~~e~~yPY~~~~~~c~~~~~---------------------------------------~~~~~i~~~~~i----- 115 (240)
+ ||++|++|||.+..+.|+.... ..++.+++|..|
T Consensus 472 ~-GI~tEscYPY~a~~g~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~y~yI~g~y~ 550 (693)
T PTZ00049 472 Q-GIPLDKVFPYTATEQTCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKDYNYIGGCYG 550 (693)
T ss_pred C-CCCcCCccCCcCCCCCCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeeeeEEeccccc
Confidence 7 9999999999988777864211 123445566555
Q ss_pred ----CcHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCC-----CCCCC------------CCCCCcEEEEEEecc
Q psy7632 116 ----SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDAR-----ACNPH------------PSRLTHMVVIVGYGQ 174 (240)
Q Consensus 116 ----~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~-----~~~~~------------~~~~~Hav~IVGy~~ 174 (240)
.+++.||++|+..|||+++|.++++|+.|++|| |..+. .|... ....+|||+|||||.
T Consensus 551 ~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGV-Y~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~ 629 (693)
T PTZ00049 551 CNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGV-YYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGE 629 (693)
T ss_pred ccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCcc-ccCcccccccccCCccccccccccccccccCceEEEEEEecc
Confidence 268899999999999999999988999999999 87511 25322 012699999999998
Q ss_pred ccCCCcceeecCCCCCCCCCCCCCC--CCEEEEEcCCCcccCcCceEEEEcCCCccccccceeEEEeC
Q psy7632 175 SRAGVPYWIVRNSWGPRWGYESRAG--VPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILAAIE 240 (240)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~ywivkNSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~~~~ 240 (240)
++ .++ .+|||||||||+.||++|||||.|+.|.||||+++++++.|
T Consensus 630 d~--------------------enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 630 EE--------------------INGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEPD 677 (693)
T ss_pred cc--------------------CCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEeee
Confidence 32 023 37999999999999999999999999999999999998754
No 13
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=1.9e-41 Score=283.49 Aligned_cols=190 Identities=27% Similarity=0.442 Sum_probs=157.0
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhC--CCCCCCHHHHhhcCCCCC-CCCCCCCCCchhHHHH-HHHHhCCccc
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHG--ELPSLSVQQLIDCHNPEN-AANYGCQGGHAMSTFY-YLQIAGGLQS 85 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~--~~~~lS~q~l~~c~~~~~-~~~~gc~GG~~~~a~~-~~~~~~Gi~~ 85 (240)
++|+++|+.|++ ||+ ++++++|+++.++.+ +.++||+|+|++|..... ....+|+||.+..++. ++.++ |+++
T Consensus 9 ~~~v~dQg~~gs-Cwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~~~~~~-Gi~~ 86 (223)
T cd02619 9 LTPVKNQGSRGS-CWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALK-GIPP 86 (223)
T ss_pred CCCcccCCCCcC-cHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHHHHHHc-CCCc
Confidence 788999987555 776 789999999999988 889999999999987621 0136999999999998 66655 9999
Q ss_pred CCCcCCCCCCCccccc----CCCceeeeceeEEeC--cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccC----CCCC
Q psy7632 86 ERDYPFEGKQGACRYV----LGQDVVQVNDIFGLS--GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISH----DARA 155 (240)
Q Consensus 86 e~~yPY~~~~~~c~~~----~~~~~~~i~~~~~i~--~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~----~~~~ 155 (240)
|++|||......|... .....+++..|..+. +++.||++|+++|||+++|.+.+.|..|++++ +. ....
T Consensus 87 e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (223)
T cd02619 87 EEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGI-IYEEIVYLLY 165 (223)
T ss_pred cccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCcc-cccccccccc
Confidence 9999999887776532 344668899999887 68999999999999999999999999999998 52 1023
Q ss_pred CCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCC
Q psy7632 156 CNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225 (240)
Q Consensus 156 ~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 225 (240)
+.... ++|||+|||||+ +. ..+++|||||||||+.||++||+||+++.
T Consensus 166 ~~~~~--~~Hav~ivGy~~-~~-------------------~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 166 EDGDL--GGHAVVIVGYDD-NY-------------------VEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred CCCcc--CCeEEEEEeecC-CC-------------------CCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 33333 899999999999 50 02678999999999999999999999985
No 14
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=1.9e-40 Score=318.48 Aligned_cols=208 Identities=22% Similarity=0.393 Sum_probs=160.8
Q ss_pred ccccCCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCc-hhHHHHHHHHhCCcc
Q psy7632 7 SSVPIPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGH-AMSTFYYLQIAGGLQ 84 (240)
Q Consensus 7 ~~~~~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~-~~~a~~~~~~~~Gi~ 84 (240)
+.+...++++|+.|++ ||| |+++++|++++++.+..+.||+|+|++|+..+ ++.+|.||+ +..++.|+.+++|++
T Consensus 540 sC~s~i~VKDQG~CGS-CWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~--gn~GC~GG~~~~efl~yI~e~GgLp 616 (1004)
T PTZ00462 540 NCISKIQIEDQGNCAI-SWIFASKYHLETIKCMKGYEPHAISALYIANCSKGE--HKDRCDEGSNPLEFLQIIEDNGFLP 616 (1004)
T ss_pred CCCCCCCcccCCcchH-HHHHHHHHHHHHHHHHhcCCCcccCHHHHHhccccc--CCCCCCCCCcHHHHHHHHHHcCCCc
Confidence 3444667888877655 666 78999999999999999999999999998653 468999997 556668988886789
Q ss_pred cCCCcCCCC--CCCcccccCCC------------------ceeeeceeEEeCc----------HHHHHHHHHhCCCEEEE
Q psy7632 85 SERDYPFEG--KQGACRYVLGQ------------------DVVQVNDIFGLSG----------EKAMRHFIHRKGPVVAY 134 (240)
Q Consensus 85 ~e~~yPY~~--~~~~c~~~~~~------------------~~~~i~~~~~i~~----------~~~ik~~l~~~gPV~v~ 134 (240)
+|++|||.. ....|+..... ..+.+++|..+.+ ++.||++|++.|||++.
T Consensus 617 tESdYPYt~k~~~g~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kgY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~ 696 (1004)
T PTZ00462 617 ADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAY 696 (1004)
T ss_pred ccccCCCccCCCCCCCCCCcccccccccccccccccccccceeeccceEEecccccccchhhHHHHHHHHHHhcCCEEEE
Confidence 999999975 45678743210 1233456665541 46899999999999999
Q ss_pred EecCcccccCC-CCcccCCCCCCCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCccc
Q psy7632 135 VNPALMINDYT-GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRW 213 (240)
Q Consensus 135 ~~~~~~f~~y~-~gi~~~~~~~~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~W 213 (240)
|.+. +|+.|. +|+ +.. ..|.... .+|||+|||||.+. . +...+..|||||||||+.|
T Consensus 697 IdAs-df~~Y~~sGI-yv~-~~Cgs~~--~nHAVlIVGYGt~i-n----------------~eg~gk~YWIVRNSWGt~W 754 (1004)
T PTZ00462 697 IKAE-NVLGYEFNGK-KVQ-NLCGDDT--ADHAVNIVGYGNYI-N----------------DEDEKKSYWIVRNSWGKYW 754 (1004)
T ss_pred EEee-hHHhhhcCCc-ccc-CCCCCCc--CCceEEEEEecccc-c----------------ccCCCCceEEEEcCCCCCc
Confidence 9984 688885 898 555 4687655 79999999999721 0 0013568999999999999
Q ss_pred CcCceEEEEc-CCCccccccceeEEEe
Q psy7632 214 GYAGYAYVER-GTNACGIERVVILAAI 239 (240)
Q Consensus 214 G~~Gy~~i~~-~~~~cgi~~~~~~~~~ 239 (240)
|++|||||.| +.+.|||..-..+||.
T Consensus 755 GEnGYFKI~r~g~n~CGin~i~t~~~f 781 (1004)
T PTZ00462 755 GDEGYFKVDMYGPSHCEDNFIHSVVIF 781 (1004)
T ss_pred CCCeEEEEEeCCCCCCccchheeeeeE
Confidence 9999999998 5799999887777764
No 15
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=4.9e-40 Score=267.13 Aligned_cols=165 Identities=38% Similarity=0.774 Sum_probs=135.1
Q ss_pred cccCccc-cCCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHh
Q psy7632 3 RFEESSV-PIPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIA 80 (240)
Q Consensus 3 ~~~~~~~-~~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~ 80 (240)
+|+.+.. -++|+.+|+.| ++||| +++++||+++.+++++.++||+|+|++|... .+.+|+||++..|++|+.++
T Consensus 4 ~~D~R~~~~~~~v~dQg~C-GsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~---~~~gC~GG~~~~a~~~~~~~ 79 (174)
T smart00645 4 SFDWRKKGAVTPVKDQGQC-GSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTG---GNNGCNGGLPDNAFEYIKKN 79 (174)
T ss_pred cCcccccCCCCccccCccc-chHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCC---CCCCCCCcCHHHHHHHHHHc
Confidence 3444433 24567777754 55877 7799999999999999999999999999975 25699999999999999976
Q ss_pred CCcccCCCcCCCCCCCcccccCCCceeeeceeEEeCcHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCC
Q psy7632 81 GGLQSERDYPFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHP 160 (240)
Q Consensus 81 ~Gi~~e~~yPY~~~~~~c~~~~~~~~~~i~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~ 160 (240)
.|+++|++|||+. ++.+.+. +|+.|++|| |+. +.|....
T Consensus 80 ~Gi~~e~~~PY~~--------------------------------------~~~~~~~-~f~~Y~~Gi-~~~-~~~~~~~ 118 (174)
T smart00645 80 GGLETESCYPYTG--------------------------------------SVAIDAS-DFQFYKSGI-YDH-PGCGSGT 118 (174)
T ss_pred CCcccccccCccc--------------------------------------EEEEEcc-cccCCcCeE-ECC-CCCCCCc
Confidence 6999999999985 4455554 599999998 876 3465544
Q ss_pred CCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCC-Ccccccccee
Q psy7632 161 SRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT-NACGIERVVI 235 (240)
Q Consensus 161 ~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~-~~cgi~~~~~ 235 (240)
.+|+|+|||||.++ ++..|||||||||+.||++|||||.++. |.|+|+....
T Consensus 119 --~~Hav~ivGyg~~~---------------------~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 119 --LDHAVLIVGYGTEE---------------------NGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred --ccEEEEEEEEeecC---------------------CCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 79999999999742 4568999999999999999999999998 9999976553
No 16
>KOG1544|consensus
Probab=100.00 E-value=2.7e-35 Score=250.93 Aligned_cols=203 Identities=31% Similarity=0.536 Sum_probs=164.7
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHhCC--CCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCcccCCCc
Q psy7632 12 PGLGERGGAKNVCTPLHAALLEAQFFIRHGE--LPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89 (240)
Q Consensus 12 ~~~~~q~~~~~~C~aaa~~~le~~~~~~~~~--~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi~~e~~y 89 (240)
.++-||+.|.++|++++++....+++|+... ...||+|+|++|.... .+||+||.+..|.=|+.+. |++...+|
T Consensus 224 H~plDQgnCa~SWafSTaavasDRiAI~S~GR~t~~LSpQnLlSC~~h~---q~GC~gG~lDRAWWYlRKr-GvVsdhCY 299 (470)
T KOG1544|consen 224 HEPLDQGNCAGSWAFSTAAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQ---QQGCRGGRLDRAWWYLRKR-GVVSDHCY 299 (470)
T ss_pred cCccccCCcccceeeeeehhccceeEEeeccccccccChHHhcchhhhh---hccCccCcccchheeeecc-cccccccc
Confidence 3577888888877777777777788777653 6799999999998773 7899999999999999987 99999999
Q ss_pred CCCCCC----C------------------cccccC--CCceeeeceeEEeC-cHHHHHHHHHhCCCEEEEEecCcccccC
Q psy7632 90 PFEGKQ----G------------------ACRYVL--GQDVVQVNDIFGLS-GEKAMRHFIHRKGPVVAYVNPALMINDY 144 (240)
Q Consensus 90 PY~~~~----~------------------~c~~~~--~~~~~~i~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~~f~~y 144 (240)
||...+ + .|+... +...|+.+..+++. ++++|++.|+++|||-+.|.+.++|+.|
T Consensus 300 P~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~Y 379 (470)
T KOG1544|consen 300 PFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLY 379 (470)
T ss_pred cccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhh
Confidence 997421 1 244321 23567888888888 9999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCC-----CCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceE
Q psy7632 145 TGGVISHDARACNPH-----PSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYA 219 (240)
Q Consensus 145 ~~gi~~~~~~~~~~~-----~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~ 219 (240)
++|| |+.. +.... ...+.|+|-|.|||. +.+ . .+...+||+..||||+.||++|||
T Consensus 380 kgGi-Y~H~-~~~~~~~e~yr~~gtHsVk~tGWG~-~~~--------~--------~G~~~KyW~aANSWG~~WGE~GYF 440 (470)
T KOG1544|consen 380 KGGI-YSHT-PVSLGRPERYRRHGTHSVKITGWGE-ETL--------P--------DGRTLKYWTAANSWGPAWGERGYF 440 (470)
T ss_pred ccce-eecc-ccccCCchhhhhcccceEEEeeccc-ccC--------C--------CCCeeEEEEeecccccccccCceE
Confidence 9999 9762 21111 134789999999998 411 1 114567999999999999999999
Q ss_pred EEEcCCCccccccceeEE
Q psy7632 220 YVERGTNACGIERVVILA 237 (240)
Q Consensus 220 ~i~~~~~~cgi~~~~~~~ 237 (240)
||.|+.|.|-||++.+.|
T Consensus 441 riLRGvNecdIEsfvIgA 458 (470)
T KOG1544|consen 441 RILRGVNECDIESFVIGA 458 (470)
T ss_pred EEeccccchhhhHhhhhh
Confidence 999999999999998765
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=9.4e-25 Score=190.13 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=128.3
Q ss_pred CCCCCCCCCCCCchHH-HHHHHHHHHHHHHhCCCCCCCHHHHhhcC-CCCCCCCCCC-----CCCchhHHHHHHHHhCCc
Q psy7632 11 IPGLGERGGAKNVCTP-LHAALLEAQFFIRHGELPSLSVQQLIDCH-NPENAANYGC-----QGGHAMSTFYYLQIAGGL 83 (240)
Q Consensus 11 ~~~~~~q~~~~~~C~a-aa~~~le~~~~~~~~~~~~lS~q~l~~c~-~~~~~~~~gc-----~GG~~~~a~~~~~~~~Gi 83 (240)
+.||++|+.+++ ||+ ++++++|+.+.-.. ..++|+..+.... ..+ .++| +||....+..|+.++.|.
T Consensus 111 vs~v~dQg~~Gs-cwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~y---e~~fd~~~~d~g~~~m~~a~l~e~sgp 184 (372)
T COG4870 111 VSPVKDQGSGGS-CWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPY---EKGFDYTSNDGGNADMSAAYLTEWSGP 184 (372)
T ss_pred cccccccCcccc-eEeeeehhhhhheecccc--cccccccchhhhcCCCc---cccCCCccccCCccccccccccccCCc
Confidence 456667777666 665 89999999865443 5677777554422 221 1222 388888888899989999
Q ss_pred ccCCCcCCCCCCCcccccCCCceeeeceeEEeC------cHHHHHHHHHhCCCEEEEEec--CcccccCCCCcccCCCCC
Q psy7632 84 QSERDYPFEGKQGACRYVLGQDVVQVNDIFGLS------GEKAMRHFIHRKGPVVAYVNP--ALMINDYTGGVISHDARA 155 (240)
Q Consensus 84 ~~e~~yPY~~~~~~c~~~~~~~~~~i~~~~~i~------~~~~ik~~l~~~gPV~v~~~~--~~~f~~y~~gi~~~~~~~ 155 (240)
+.+.+-||......|+... ....+......++ +...||+++...|.+...|++ +..+. ..-+. +.. .
T Consensus 185 v~et~d~y~~~s~~~~~~~-p~~k~~~~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~-~~~~~-~~~--~ 259 (372)
T COG4870 185 VYETDDPYSENSYFSPTNL-PVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLG-ICIPY-PYV--D 259 (372)
T ss_pred chhhcCccccccccCCcCC-chhhccccceecccchhhhcccchHHHHhhhccccceeEEecccccc-cccCC-CCC--C
Confidence 9999999998777666421 2233444444444 566699999999998876665 22222 22233 221 1
Q ss_pred CCCCCCCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCC
Q psy7632 156 CNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225 (240)
Q Consensus 156 ~~~~~~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 225 (240)
.. .. .+|||+|||||| . +++|.+. ..+.+.++||||||||+.||++|||||++..
T Consensus 260 s~-~~--~gHAv~iVGyDD-s------~~~n~~~-----~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 260 SG-EN--WGHAVLIVGYDD-S------FDINNFK-----YGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cc-cc--ccceEEEEeccc-c------ccccccc-----cCCCCCceEEEECccccccccCceEEEEeee
Confidence 11 33 899999999999 5 3444433 2336778999999999999999999999985
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.86 E-value=4.4e-21 Score=174.63 Aligned_cols=188 Identities=18% Similarity=0.212 Sum_probs=128.2
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC-CCCCCCHHHHhhcCCCC----------------C--------CCCC
Q psy7632 9 VPIPGLGERGGAKNVCTPLHAALLEAQFFIRHG-ELPSLSVQQLIDCHNPE----------------N--------AANY 63 (240)
Q Consensus 9 ~~~~~~~~q~~~~~~C~aaa~~~le~~~~~~~~-~~~~lS~q~l~~c~~~~----------------~--------~~~~ 63 (240)
++..++.+|...+.||.||++..|+..++++.+ ..++||+.||+.-.+.+ . ....
T Consensus 52 v~~~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~ 131 (437)
T cd00585 52 VPTEPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANP 131 (437)
T ss_pred eCCCCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCC
Confidence 455677777776664446889999998877544 68999999986522111 0 0245
Q ss_pred CCCCCchhHHHHHHHHhCCcccCCCcCCCCC---------------------------CC--------------------
Q psy7632 64 GCQGGHAMSTFYYLQIAGGLQSERDYPFEGK---------------------------QG-------------------- 96 (240)
Q Consensus 64 gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~---------------------------~~-------------------- 96 (240)
..+||.-..++..+.+. |+++++.||=+.. .+
T Consensus 132 ~~DGGqw~m~~~li~KY-GvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~i 210 (437)
T cd00585 132 QNDGGQWDMLVNLIEKY-GLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRI 210 (437)
T ss_pred cCCCCchHHHHHHHHHc-CCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 67899999999999976 9999999984310 00
Q ss_pred -----------------------------c----------ccc--------cCC-----Ccee-----------eeceeE
Q psy7632 97 -----------------------------A----------CRY--------VLG-----QDVV-----------QVNDIF 113 (240)
Q Consensus 97 -----------------------------~----------c~~--------~~~-----~~~~-----------~i~~~~ 113 (240)
+ |+. .+. ...+ +...|.
T Consensus 211 l~~~lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~y~ 290 (437)
T cd00585 211 LAIALGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPILYL 290 (437)
T ss_pred HHHHcCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccceEE
Confidence 0 000 000 0011 112333
Q ss_pred EeCcHHHHH----HHHHhCCCEEEEEecCcccccCCCCcccCCCCC--------------------CCCCCCCCCcEEEE
Q psy7632 114 GLSGEKAMR----HFIHRKGPVVAYVNPALMINDYTGGVISHDARA--------------------CNPHPSRLTHMVVI 169 (240)
Q Consensus 114 ~i~~~~~ik----~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~--------------------~~~~~~~~~Hav~I 169 (240)
+++ ++.++ ++|..++||.+++++. .|+.+++|| +.. .. +.... .+|||+|
T Consensus 291 Nvp-~d~l~~~~~~~L~~g~pV~~g~Dv~-~~~~~k~GI-~d~-~~~~~~~~f~~~~~~~KaeRl~~~es~--~tHAM~i 364 (437)
T cd00585 291 NVP-MDVLKKAAIAQLKDGEPVWFGCDVG-KFSDRKSGI-LDT-DLFDYELLFGIDFGLNKAERLDYGESL--MTHAMVL 364 (437)
T ss_pred ecC-HHHHHHHHHHHHhcCCCEEEEEEcC-hhhccCCcc-ccC-cccchhhhcCccccCCHHHHHhhcCCc--CCeEEEE
Confidence 333 44444 7888899999999996 577899999 654 21 22223 7899999
Q ss_pred EEeccccCCCcceeecCCCCCCCCCCCCCCC-CEEEEEcCCCcccCcCceEEEEcC
Q psy7632 170 VGYGQSRAGVPYWIVRNSWGPRWGYESRAGV-PYWIVRNSWGPRWGYAGYAYVERG 224 (240)
Q Consensus 170 VGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~~ 224 (240)
|||+.++ +++ .||+||||||+.||++||++|+.+
T Consensus 365 vGv~~D~---------------------~g~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 365 TGVDLDE---------------------DGKPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred EEEEecC---------------------CCCcceEEEEcccCCCCCCCcceehhHH
Confidence 9999843 354 599999999999999999999975
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.60 E-value=1.9e-14 Score=131.32 Aligned_cols=191 Identities=17% Similarity=0.159 Sum_probs=108.0
Q ss_pred ccCCCCCCCCCCCCchHHHHHHHHHHHHHHHhC-CCCCCCHHHHh----------------hcCCCCC--------CCCC
Q psy7632 9 VPIPGLGERGGAKNVCTPLHAALLEAQFFIRHG-ELPSLSVQQLI----------------DCHNPEN--------AANY 63 (240)
Q Consensus 9 ~~~~~~~~q~~~~~~C~aaa~~~le~~~~~~~~-~~~~lS~q~l~----------------~c~~~~~--------~~~~ 63 (240)
++..++-+|...+.||-||++..|+..++.+.+ +..+||+.||+ ++..... ....
T Consensus 53 v~~~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~ 132 (438)
T PF03051_consen 53 VDTGPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNP 132 (438)
T ss_dssp ESS-S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHST
T ss_pred eccCCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcC
Confidence 455677777777774446899999999888776 68999999985 2222100 0123
Q ss_pred CCCCCchhHHHHHHHHhCCcccCCCcCCCC--------------------------------------------------
Q psy7632 64 GCQGGHAMSTFYYLQIAGGLQSERDYPFEG-------------------------------------------------- 93 (240)
Q Consensus 64 gc~GG~~~~a~~~~~~~~Gi~~e~~yPY~~-------------------------------------------------- 93 (240)
..+||.-..+...+.+. |+++++.||=..
T Consensus 133 ~~DGGqw~~~~nli~KY-GvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~i 211 (438)
T PF03051_consen 133 VSDGGQWDMVVNLIKKY-GVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRI 211 (438)
T ss_dssp T-S-B-HHHHHHHHHHH----BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHc-CcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46799888888888876 999999998431
Q ss_pred ------CCC---c-------------------------cc---------------ccCCCceee-----------eceeE
Q psy7632 94 ------KQG---A-------------------------CR---------------YVLGQDVVQ-----------VNDIF 113 (240)
Q Consensus 94 ------~~~---~-------------------------c~---------------~~~~~~~~~-----------i~~~~ 113 (240)
..+ + +. ..+-...+. -..|.
T Consensus 212 l~~~lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~yl 291 (438)
T PF03051_consen 212 LAIYLGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVRYL 291 (438)
T ss_dssp HHHHH---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEEEE
T ss_pred HHHHcCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCcceeEe
Confidence 000 0 00 000001111 11234
Q ss_pred EeC---cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCC------------------CCCCCCCcEEEEEEe
Q psy7632 114 GLS---GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACN------------------PHPSRLTHMVVIVGY 172 (240)
Q Consensus 114 ~i~---~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~------------------~~~~~~~Hav~IVGy 172 (240)
+++ =...+.++|.++.||-.+.++.. +..-+.|+ .+.. ... ...+..+|||+|||.
T Consensus 292 Nvpid~lk~~~i~~Lk~G~~VwfgcDV~k-~~~~k~Gi-~D~~-~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv 368 (438)
T PF03051_consen 292 NVPIDELKDAAIKSLKAGYPVWFGCDVGK-FFDRKNGI-MDTD-LYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGV 368 (438)
T ss_dssp E--HHHHHHHHHHHHHTT--EEEEEETTT-TEETTTTE-E-TT-SB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEE
T ss_pred ccCHHHHHHHHHHHHHcCCcEEEeccCCc-cccccchh-hccc-hhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEE
Confidence 444 24566778888999999999965 45557777 4331 100 111447899999999
Q ss_pred ccccCCCcceeecCCCCCCCCCCCCCCC-CEEEEEcCCCcccCcCceEEEEcC
Q psy7632 173 GQSRAGVPYWIVRNSWGPRWGYESRAGV-PYWIVRNSWGPRWGYAGYAYVERG 224 (240)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ywivkNSWG~~WG~~Gy~~i~~~ 224 (240)
+.|+ ++. .+|+|+||||+..|.+||+.|+-.
T Consensus 369 ~~D~---------------------~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 369 DLDE---------------------DGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp EE-T---------------------TSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred Eecc---------------------CCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 9854 444 599999999999999999999854
No 20
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=98.46 E-value=6.2e-07 Score=78.28 Aligned_cols=41 Identities=34% Similarity=0.630 Sum_probs=33.6
Q ss_pred CCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEE
Q psy7632 162 RLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVE 222 (240)
Q Consensus 162 ~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~ 222 (240)
...|||+|.|.+-++.+ ..--|.|.||||.+-|.+|||-++
T Consensus 360 LmTHAMvlTGvd~d~~g--------------------~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 360 LMTHAMVLTGVDLDETG--------------------NPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred HHHHHHHhhccccccCC--------------------CceeeEeecccccccCCCceEeeh
Confidence 36799999999985511 223699999999999999999876
No 21
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=97.52 E-value=0.0011 Score=50.59 Aligned_cols=47 Identities=26% Similarity=0.308 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
+...|+++|.++.||++.+...-.-. .... +. ... .+|.|+|+||++
T Consensus 88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~--~~~~-~~------~~~--~~H~vvi~Gy~~ 134 (144)
T PF13529_consen 88 SFDDIKQEIDAGRPVIVSVNSGWRPP--NGDG-YD------GTY--GGHYVVIIGYDE 134 (144)
T ss_dssp -HHHHHHHHHTT--EEEEEETTSS----TTEE-EE------E-T--TEEEEEEEEE-S
T ss_pred cHHHHHHHHHCCCcEEEEEEcccccC--CCCC-cC------CCc--CCEEEEEEEEeC
Confidence 78999999999999999998521000 1111 11 122 799999999987
No 22
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.54 E-value=0.042 Score=44.22 Aligned_cols=133 Identities=15% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHH---------HHhCCCCCCCHHHHhhcCCCCCCCCCCCCCCchhHHHHHHHHhCCc
Q psy7632 13 GLGERGGAKNVCTPLHAALLEAQFF---------IRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGL 83 (240)
Q Consensus 13 ~~~~q~~~~~~C~aaa~~~le~~~~---------~~~~~~~~lS~q~l~~c~~~~~~~~~gc~GG~~~~a~~~~~~~~Gi 83 (240)
...++|+..+=|++.+.++|--... +.+...+.+|+++|..+... +...++|.... |.
T Consensus 14 ~I~EtQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~~~------------~~~~i~y~ks~-g~ 80 (175)
T PF05543_consen 14 RIRETQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTSLT------------PNQMIKYAKSQ-GR 80 (175)
T ss_dssp ------SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH--B-------------HHHHHHHHHHT-TE
T ss_pred EEeeccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcCCC------------HHHHHHHHHHc-Cc
Confidence 3566777777788877666544321 11112456666666655422 35777776644 43
Q ss_pred ccCCCcCCCCCCCcccccCCCceeeeceeEEeCcHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCC
Q psy7632 84 QSERDYPFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRL 163 (240)
Q Consensus 84 ~~e~~yPY~~~~~~c~~~~~~~~~~i~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~ 163 (240)
.+. -.....+.+++|+.+.++.|+.+.... ... ..... .
T Consensus 81 ~~~------------------------~~n~~~s~~eV~~~~~~nk~i~i~~~~------------v~~---~~~~~--~ 119 (175)
T PF05543_consen 81 NPQ------------------------YNNRMPSFDEVKKLIDNNKGIAILADR------------VEQ---TNGPH--A 119 (175)
T ss_dssp EEE------------------------EECS---HHHHHHHHHTT-EEEEEEEE------------TTS---CTTB----
T ss_pred chh------------------------HhcCCCCHHHHHHHHHcCCCeEEEecc------------ccc---CCCCc--c
Confidence 211 001112789999999998998887765 222 12222 7
Q ss_pred CcEEEEEEeccccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEEcCC
Q psy7632 164 THMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGT 225 (240)
Q Consensus 164 ~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 225 (240)
+|||+||||-.-. ++.++.++=|-| +++++-++...
T Consensus 120 gHAlavvGya~~~---------------------~g~~~y~~WNPW-----~~~~~~~sa~s 155 (175)
T PF05543_consen 120 GHALAVVGYAKPN---------------------NGQKTYYFWNPW-----WNDVMIQSAKS 155 (175)
T ss_dssp EEEEEEEEEEEET---------------------TSEEEEEEE-TT------SS-EEEETT-
T ss_pred ceeEEEEeeeecC---------------------CCCeEEEEeCCc-----cCCcEEEecCC
Confidence 9999999996622 446678888999 45566555543
No 23
>KOG4128|consensus
Probab=96.12 E-value=0.0051 Score=54.13 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=51.4
Q ss_pred cHHHHHHHH----HhCCCEEEEEecCcccccCCCCcccCCC------------CC-CCCC-----CCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFI----HRKGPVVAYVNPALMINDYTGGVISHDA------------RA-CNPH-----PSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l----~~~gPV~v~~~~~~~f~~y~~gi~~~~~------------~~-~~~~-----~~~~~Hav~IVGy~~ 174 (240)
+.+.|++.+ ..+-||-.+.++ ..+...+.|. .+-. +. ...+ .+...|||++.|-+.
T Consensus 305 ~~d~l~k~vv~sl~~~kaVwfgcd~-~k~~~~K~G~-~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~ 382 (457)
T KOG4128|consen 305 SMDILMKIVVTSLEGDKAVWFGCDI-RKAISLKSGP-LDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGL 382 (457)
T ss_pred CHHHHHHHHHHHhcCCcceEEeccc-HhhhhcccCc-cchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccc
Confidence 456665554 446778777776 3344455554 2110 00 0001 133679999999983
Q ss_pred ccCCCcceeecCCCCCCCCCCCCCCCCEEEEEcCCCcccCcCceEEEE
Q psy7632 175 SRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVE 222 (240)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ywivkNSWG~~WG~~Gy~~i~ 222 (240)
.++ ...+..-|.|.||||++-|.+||..|.
T Consensus 383 kd~------------------~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 383 KDP------------------ATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred cCc------------------ccCCchhhhhhchhhhhccccchhhhh
Confidence 121 013445699999999999999996654
No 24
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=93.76 E-value=0.21 Score=43.82 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
..+.|++.|.++.||.+.++.+ +..|.... ..... ..|.++|+||++
T Consensus 77 ~~~~l~~~l~~g~pv~~~~D~~--~lpy~~~~-------~~~~~--~~H~i~v~G~d~ 123 (317)
T PF14399_consen 77 AWEELKEALDAGRPVIVWVDMY--YLPYRPNY-------YKKHH--ADHYIVVYGYDE 123 (317)
T ss_pred HHHHHHHHHhCCCceEEEeccc--cCCCCccc-------ccccc--CCcEEEEEEEeC
Confidence 5789999999888999998771 22222211 12233 789999999997
No 25
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=93.17 E-value=0.46 Score=39.65 Aligned_cols=56 Identities=16% Similarity=0.367 Sum_probs=34.5
Q ss_pred cHHHHHHHHHhCCCEEEEEecCcccccC---CCCcc-cCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFIHRKGPVVAYVNPALMINDY---TGGVI-SHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y---~~gi~-~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
+.++|..+|..+||+.+-++.. .... +.-.. ...+.-......+.+|-|+|+||+.
T Consensus 112 s~~ei~~hl~~g~~aIvLVd~~--~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~ 171 (212)
T PF09778_consen 112 SIQEIIEHLSSGGPAIVLVDAS--LLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDA 171 (212)
T ss_pred cHHHHHHHHhCCCcEEEEEccc--cccChhhcccccccccccccCCCCCccEEEEEEEeecC
Confidence 8999999999999888877652 2110 11110 0000112223345899999999987
No 26
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=91.78 E-value=3.3 Score=32.92 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=29.6
Q ss_pred cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
+.+.++..|.++||+-++... + .+.. ..|+++|+|-+.
T Consensus 97 t~e~~~~LL~~yGPLwv~~~~-----------------P-~~~~--~~H~~ViTGI~~ 134 (166)
T PF12385_consen 97 TAEGLANLLREYGPLWVAWEA-----------------P-GDSW--VAHASVITGIDG 134 (166)
T ss_pred CHHHHHHHHHHcCCeEEEecC-----------------C-CCcc--eeeEEEEEeecC
Confidence 688999999999999998544 1 1222 579999999987
No 27
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.40 E-value=0.95 Score=36.73 Aligned_cols=41 Identities=27% Similarity=0.452 Sum_probs=32.2
Q ss_pred EEeC--cHHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 113 FGLS--GEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 113 ~~i~--~~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
..++ ++..||..|.++.||.+..-. |.. ..-|+|+|+|||+
T Consensus 116 ~d~tGksl~~ik~ql~kg~PV~iw~T~------------~~~---------~s~H~v~itgyDk 158 (195)
T COG4990 116 VDLTGKSLSDIKGQLLKGRPVVIWVTN------------FHS---------YSIHSVLITGYDK 158 (195)
T ss_pred ccCcCCcHHHHHHHHhcCCcEEEEEec------------ccc---------cceeeeEeecccc
Confidence 4444 899999999999999887655 221 1569999999988
No 28
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=85.43 E-value=2.9 Score=31.59 Aligned_cols=34 Identities=35% Similarity=0.583 Sum_probs=26.3
Q ss_pred HHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEec
Q psy7632 121 MRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYG 173 (240)
Q Consensus 121 ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~ 173 (240)
+++.|..+.||.+.+.. +. . ... .+|+|+|+||+
T Consensus 70 ~~~~l~~~~Pvi~~~~~---------~~-~-------~~~--~gH~vVv~g~~ 103 (141)
T cd02549 70 LLRQLAAGHPVIVSVNL---------GV-S-------ITP--SGHAMVVIGYD 103 (141)
T ss_pred HHHHHHCCCeEEEEEec---------Cc-c-------cCC--CCeEEEEEEEc
Confidence 88999999999998875 11 1 112 68999999998
No 29
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=80.56 E-value=5.5 Score=35.18 Aligned_cols=43 Identities=19% Similarity=0.360 Sum_probs=32.0
Q ss_pred CCCCcEEEEEEeccccCCCcceeecCCCCCCCCCCCCC--CCCEEEEEcCCCc-cc------------------------
Q psy7632 161 SRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRA--GVPYWIVRNSWGP-RW------------------------ 213 (240)
Q Consensus 161 ~~~~Hav~IVGy~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ywivkNSWG~-~W------------------------ 213 (240)
...+||-.|++... - + +.....+||.||. .|
T Consensus 233 l~~~HaY~Vl~~~~-~---------------------~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~ 290 (315)
T cd00044 233 LVKGHAYSVLDVRE-V---------------------QEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLS 290 (315)
T ss_pred cccCcceEEeEEEE-E---------------------ccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCC
Confidence 33799999999976 3 2 5678888999884 22
Q ss_pred -CcCceEEEEcCC
Q psy7632 214 -GYAGYAYVERGT 225 (240)
Q Consensus 214 -G~~Gy~~i~~~~ 225 (240)
.++|.|||+..+
T Consensus 291 ~~~dG~Fwm~~~d 303 (315)
T cd00044 291 GKDDGEFWMSFED 303 (315)
T ss_pred CCCCCEEEEEhHH
Confidence 258999998763
No 30
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=53.56 E-value=53 Score=29.07 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=11.1
Q ss_pred CCCCcEEEEEEecc
Q psy7632 161 SRLTHMVVIVGYGQ 174 (240)
Q Consensus 161 ~~~~Hav~IVGy~~ 174 (240)
...+||=.|++...
T Consensus 225 Lv~~HaYsVl~v~~ 238 (318)
T smart00230 225 LVKGHAYSVTDVRE 238 (318)
T ss_pred cccCccEEEEEEEE
Confidence 34799999998866
No 31
>PF00648 Peptidase_C2: Calpain family cysteine protease This is family C2 in the peptidase classification. ; InterPro: IPR001300 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C2 (calpain family, clan CA). A type example is calpain, which is an intracellular protease involved in many important cellular functions that are regulated by calcium []. The protein is a complex of 2 polypeptide chains (light and heavy), with three known forms in mammals [, ]: a highly calcium-sensitive (i.e., micro-molar range) form known as mu-calpain, mu-CANP or calpain I; a form sensitive to calcium in the milli-molar range, known as m-calpain, m-CANP or calpain II; and a third form, known as p94, which is found in skeletal muscle only []. All forms have identical light but different heavy chains. Both mu- and m-calpain are heterodimers containing an identical 28kDa subunit and an 80kDa subunit that shares 55-65% sequence homology between the two proteases [, ]. The crystallographic structure of m-calpain reveals six "domains" in the 80kDa subunit: A 19-amino acid NH2-terminal sequence; Active site domain IIa; Active site domain IIb. Domain 2 shows low levels of sequence similarity to papain; although the catalytic His has not been located by biochemical means, it is likely that calpain and papain are related []. Domain III; An 18-amino acid extended sequence linking domain III to domain IV; Domain IV, which resembles the penta EF-hand family of polypeptides, binds calcium and regulates activity []. />]. Ca2+-binding causes a rearrangement of the protein backbone, the net effect of which is that a Trp side chain, which acts as a wedge between catalytic domains IIa and IIb in the apo state, moves away from the active site cleft allowing for the proper formation of the catalytic triad []. Calpain-like mRNAs have been identified in other organisms including bacteria, but the molecules encoded by these mRNAs have not been isolated, so little is known about their properties. How calpain activity is regulated in these organisms cells is still unclear In metazoans, the activity of calpain is controlled by a single proteinase inhibitor, calpastatin (IPR001259 from INTERPRO). The calpastatin gene can produce eight or more calpastatin polypeptides ranging from 17 to 85 kDa by use of different promoters and alternative splicing events. The physiological significance of these different calpastatins is unclear, although all bind to three different places on the calpain molecule; binding to at least two of the sites is Ca2+ dependent. The calpains ostensibly participate in a variety of cellular processes including remodelling of cytoskeletal/membrane attachments, different signal transduction pathways, and apoptosis. Deregulated calpain activity following loss of Ca2+ homeostasis results in tissue damage in response to events such as myocardial infarcts, stroke, and brain trauma []. Calpains are a family of cytosolic cysteine proteinases (see PDOC00126 from PROSITEDOC). Members of the calpain family are believed to function in various biological processes, including integrin-mediated cell migration, cytoskeletal remodeling, cell differentiation and apoptosis [, ]. The calpain family includes numerous members from C. elegans to mammals and with homologues in yeast and bacteria. The best characterised members are the m- and mu-calpains, both proteins are heterodimer composed of a large catalytic subunit and a small regulatory subunit. The large subunit comprises four domains (dI-dIV) while the small subunit has two domains (dV-dVI). Domain dI is a short region cleaved by autolysis, dII is the catalytic core, dIII is a C2-like domain, dIV consists of five calcium binding EF-hand motifs []. The crystal structure of calpain has been solved [, ]. The catalytic region consists of two distinct structural domains (dIIa and dIIb). dIIa contains a central helix flanked on three faces by a cluster of alpha-helices and is entirely unrelated to the corresponding domain in the typical thiol proteinases. The fold of dIIb is similar to the corresponding domain in other cysteine proteinases and contains two three-stranded anti-parallel beta-sheets. The catalytic triad residues (C,H,N) are located in dIIa and dIIb. The activation of the domain is dependent on the binding of two calcium atoms in two non EF-hand calcium binding sites located in the catalytic core, one close to the Cys active site in dIIa and one at the end of dIIb. Calcium-binding induced conformational changes in the catalytic domain which align the active site [][]. The profile covers the whole catalytic domain.; GO: 0004198 calcium-dependent cysteine-type endopeptidase activity, 0006508 proteolysis, 0005622 intracellular; PDB: 2NQA_A 1KFU_L 1KFX_L 1QXP_B 2R9C_A 1TL9_A 2G8E_A 1KXR_B 2G8J_A 2NQG_A ....
Probab=53.39 E-value=13 Score=32.28 Aligned_cols=14 Identities=7% Similarity=0.036 Sum_probs=10.6
Q ss_pred CCCCcEEEEEEecc
Q psy7632 161 SRLTHMVVIVGYGQ 174 (240)
Q Consensus 161 ~~~~Hav~IVGy~~ 174 (240)
...+||-.|++..+
T Consensus 211 l~~~HaY~Vl~~~~ 224 (298)
T PF00648_consen 211 LVPGHAYAVLDVRE 224 (298)
T ss_dssp BBTTS-EEEEEEEE
T ss_pred cccceeEEEEEEEe
Confidence 34799999999976
No 32
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=41.85 E-value=53 Score=23.72 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=34.3
Q ss_pred CCcCCCCCCCcccccCCCceeeeceeEEeC----cHHHHHHHHHhCCCEE
Q psy7632 87 RDYPFEGKQGACRYVLGQDVVQVNDIFGLS----GEKAMRHFIHRKGPVV 132 (240)
Q Consensus 87 ~~yPY~~~~~~c~~~~~~~~~~i~~~~~i~----~~~~ik~~l~~~gPV~ 132 (240)
..|||......-+.-.....++++.+..-+ ..+.+.++|.+.||-.
T Consensus 31 heyP~rd~~~vEDlG~~~r~~~~~a~~~G~dy~~~~~~L~~al~~~G~G~ 80 (93)
T PF07157_consen 31 HEYPYRDGPWVEDLGRKARRIRVTAFFVGDDYEAQRDALIAALEAPGPGE 80 (93)
T ss_pred EecCCCCCcCeeecCCCCcEEEEEEEEECCcHHHHHHHHHHHHcCCCCeE
Confidence 468998776666666677888998888766 5677888888777743
No 33
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=41.29 E-value=1.2e+02 Score=24.62 Aligned_cols=34 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCEEEEEecCcccccCCCCcccCCCCCCCCCCCCCCcEEEEEEecc
Q psy7632 118 EKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 118 ~~~ik~~l~~~gPV~v~~~~~~~f~~y~~gi~~~~~~~~~~~~~~~~Hav~IVGy~~ 174 (240)
.+.|+..|.++.||...-.. .. .+||.+|=||..
T Consensus 140 ~~~i~~el~~~rPV~~~g~~-------------~~----------~GHawViDGy~~ 173 (192)
T PF01640_consen 140 MDMIRNELDNGRPVLYSGNS-------------KS----------GGHAWVIDGYDS 173 (192)
T ss_dssp HHHHHHHHHTT--EEEEEEE-------------TT----------EEEEEEEEEEES
T ss_pred HHHHHHHHHcCCCEEEEEec-------------CC----------CCeEEEEcCccC
Confidence 46788999999999865432 11 399999999965
No 34
>KOG4621|consensus
Probab=30.01 E-value=2.1e+02 Score=22.13 Aligned_cols=55 Identities=13% Similarity=0.242 Sum_probs=33.8
Q ss_pred cHHHHHHHHHhCCCEEEEEecCcc----cc--cCCCCcccCCCCC----CCCCCCCCCcEEEEEEecc
Q psy7632 117 GEKAMRHFIHRKGPVVAYVNPALM----IN--DYTGGVISHDARA----CNPHPSRLTHMVVIVGYGQ 174 (240)
Q Consensus 117 ~~~~ik~~l~~~gPV~v~~~~~~~----f~--~y~~gi~~~~~~~----~~~~~~~~~Hav~IVGy~~ 174 (240)
++.+|..+|+++.-|++.+.-.+. |- ..+.+. +.+ +. |.. .-+.+|.++|-||+.
T Consensus 58 Si~dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~cc-fsp-nghhcfcrt-p~YqGHfiVi~GYd~ 122 (167)
T KOG4621|consen 58 SIHDIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCC-FSP-NGHHCFCRT-PCYQGHFIVICGYDA 122 (167)
T ss_pred eHHHHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhc-cCC-CCccccccC-CcccccEEEEecccc
Confidence 799999999986677776643222 21 123344 333 11 212 234799999999976
No 35
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=29.27 E-value=56 Score=27.47 Aligned_cols=22 Identities=55% Similarity=1.381 Sum_probs=17.2
Q ss_pred ceeecCCCCCCCCCCCCCCCCEEEEEc
Q psy7632 181 YWIVRNSWGPRWGYESRAGVPYWIVRN 207 (240)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ywivkN 207 (240)
++++||++|+.||. .+|+.|+.
T Consensus 205 YWiirNSWG~~WGe-----~Gy~~i~~ 226 (243)
T cd02621 205 YWIVKNSWGSSWGE-----KGYFKIRR 226 (243)
T ss_pred EEEEEcCCCCCCCc-----CCeEEEec
Confidence 68899999999963 46887763
No 36
>KOG1542|consensus
Probab=28.25 E-value=44 Score=30.12 Aligned_cols=23 Identities=57% Similarity=1.406 Sum_probs=17.8
Q ss_pred cceeecCCCCCCCCCCCCCCCCEEEEEc
Q psy7632 180 PYWIVRNSWGPRWGYESRAGVPYWIVRN 207 (240)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~ywivkN 207 (240)
|+|++||++|++|| | .+|+.+..
T Consensus 333 PYWIVKNSWG~~WG-E----~GY~~l~R 355 (372)
T KOG1542|consen 333 PYWIVKNSWGTSWG-E----KGYYKLCR 355 (372)
T ss_pred ceEEEECCcccccc-c----cceEEEec
Confidence 78999999999997 2 25777653
No 37
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=27.80 E-value=51 Score=27.64 Aligned_cols=21 Identities=43% Similarity=1.221 Sum_probs=16.8
Q ss_pred ceeecCCCCCCCCCCCCCCCCEEEEE
Q psy7632 181 YWIVRNSWGPRWGYESRAGVPYWIVR 206 (240)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ywivk 206 (240)
++++||++|+.|| ..+|+.|+
T Consensus 201 YWivrNSWG~~WG-----e~Gy~ri~ 221 (236)
T cd02620 201 YWLAANSWGTDWG-----ENGYFRIL 221 (236)
T ss_pred EEEEEeCCCCCCC-----CCcEEEEE
Confidence 5789999999996 34688776
No 38
>PF05385 Adeno_E4: Mastadenovirus early E4 13 kDa protein; InterPro: IPR008680 This family consists of Homo sapiens and simian mastadenovirus early E4 13 kDa proteins. Human adenovirus 9 (HAdV-9) is unique in eliciting exclusively estrogen-dependent mammary tumours in Rattus spp. and in not requiring viral E1 region transforming genes for tumorigenicity. E4 codes for an oncoprotein essential for tumourigenesis by Ad9 [].
Probab=27.66 E-value=44 Score=24.76 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred ccccCCCC-CCCCCCCCchHHHHHHHHHHHH--HHHhCCCCCCCHHHHhhcC
Q psy7632 7 SSVPIPGL-GERGGAKNVCTPLHAALLEAQF--FIRHGELPSLSVQQLIDCH 55 (240)
Q Consensus 7 ~~~~~~~~-~~q~~~~~~C~aaa~~~le~~~--~~~~~~~~~lS~q~l~~c~ 55 (240)
.++|.||+ .||++|-+ |-..|.+++...+ .+.+|..+....+.|+..-
T Consensus 4 P~LPpPPv~rd~~~Ci~-WLglA~at~~Dv~r~ir~~g~~ispeAe~lL~~L 54 (109)
T PF05385_consen 4 PSLPPPPVCRDQSACIA-WLGLAYATVVDVIRAIRRDGVFISPEAERLLTGL 54 (109)
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHHHHHHHHHHHHHcCeeECHHHHHHHHHH
Confidence 35788898 66666222 3336666666544 3344556666666666543
No 39
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=27.60 E-value=56 Score=27.46 Aligned_cols=21 Identities=52% Similarity=1.305 Sum_probs=15.9
Q ss_pred ceeecCCCCCCCCCCCCCCCCEEEEE
Q psy7632 181 YWIVRNSWGPRWGYESRAGVPYWIVR 206 (240)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ywivk 206 (240)
++++||++|+.|| ..+|+.|.
T Consensus 196 YWiikNSWG~~WG-----e~Gy~~i~ 216 (239)
T cd02698 196 YWIVRNSWGEPWG-----ERGWFRIV 216 (239)
T ss_pred EEEEEcCCCcccC-----cCceEEEE
Confidence 5889999999996 34576664
Done!