RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7632
(240 letters)
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 170 bits (432), Expect = 4e-53
Identities = 69/205 (33%), Positives = 98/205 (47%), Gaps = 32/205 (15%)
Query: 29 AALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERD 88
LE + I+ G+L SLS QQL+DC + N GC GG+ + F Y++ GGL SE D
Sbjct: 30 VGALEGAYAIKTGKLVSLSEQQLVDC---STSGNNGCNGGNPDNAFEYVK-NGGLASESD 85
Query: 89 YPFEGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVNPALMINDYTG 146
YP+ GK G C+Y + ++ + E+A++ + GPV ++ + Y G
Sbjct: 86 YPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKG 145
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ S + L H V++VGYG GV YWIV+
Sbjct: 146 GIYSG----PCCSNTNLNHAVLLVGYGTE----------------------NGVDYWIVK 179
Query: 207 NSWGPRWGYAGYAYVERGTNACGIE 231
NSWG WG GY + RG+N CGI
Sbjct: 180 NSWGTSWGEKGYIRIARGSNLCGIA 204
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 152 bits (386), Expect = 4e-46
Identities = 67/213 (31%), Positives = 95/213 (44%), Gaps = 39/213 (18%)
Query: 29 AALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERD 88
LE ++ I+ G+L SLS QQL+DC + N GC GG + F Y++ GG+ +E D
Sbjct: 31 VGALEGRYCIKTGKLVSLSEQQLVDC----DTGNNGCNGGLPDNAFEYIKKNGGIVTESD 86
Query: 89 YPFEGKQGACRY-VLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMIN 142
YP+ G C++ ++ + E+A++ + + GPV ++
Sbjct: 87 YPYTAHDGTCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAIDAYEDDFQ-- 144
Query: 143 DYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPY 202
Y GV H C+ L H V+IVGYG GVPY
Sbjct: 145 LYKSGVYKHTE--CS---GELDHAVLIVGYGTEN----------------------GVPY 177
Query: 203 WIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
WIV+NSWG WG GY + RG N CGI
Sbjct: 178 WIVKNSWGTDWGENGYFRIARGVNECGIASEAS 210
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 118 bits (298), Expect = 2e-33
Identities = 61/204 (29%), Positives = 78/204 (38%), Gaps = 67/204 (32%)
Query: 29 AALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERD 88
LE ++ I+ G+L SLS QQL+DC N GC GG + F Y++ GGL++E
Sbjct: 31 TGALEGRYCIKTGKLVSLSEQQLVDC---SGGGNCGCNGGLPDNAFEYIKKNGGLETESC 87
Query: 89 YPFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGV 148
YP+ G V ++ F Y G+
Sbjct: 88 YPYTG------------SVAID----------ASDFQF-----------------YKSGI 108
Query: 149 ISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNS 208
H C L H V+IVGYG G YWIV+NS
Sbjct: 109 YDH--PGCGS--GTLDHAVLIVGYGTEVEN--------------------GKDYWIVKNS 144
Query: 209 WGPRWGYAGYAYVERGT-NACGIE 231
WG WG GY + RG N CGIE
Sbjct: 145 WGTDWGENGYFRIARGKNNECGIE 168
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 94.4 bits (235), Expect = 2e-22
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 36/188 (19%)
Query: 46 LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGACRYVLGQD 105
LS Q+L++C GC GG+ + Y++ GL S D P+ K G C
Sbjct: 282 LSEQELVNCDTKSQ----GCSGGYPDTALEYVK-NKGLSSSSDVPYLAKDGKCVVSST-K 335
Query: 106 VVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTH 165
V ++ G+ + + P V Y+ + + Y GV + + C L H
Sbjct: 336 KVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNGE---CG---KSLNH 388
Query: 166 MVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER-- 223
V++VG G Y+ + YWI++NSWG WG GY +ER
Sbjct: 389 AVLLVGEG--------------------YDEKTKKRYWIIKNSWGTDWGENGYMRLERTN 428
Query: 224 -GTNACGI 230
GT+ CGI
Sbjct: 429 EGTDKCGI 436
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 87.8 bits (218), Expect = 6e-21
Identities = 54/207 (26%), Positives = 79/207 (38%), Gaps = 41/207 (19%)
Query: 41 GELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEG------- 93
G+ P LS Q ++ C + + GC GG + + G + +E +P+
Sbjct: 53 GQQPILSPQHVLSC----SQYSQGCDGGFPFLVGKFAEDFG-IVTEDYFPYTADDDRPCK 107
Query: 94 -KQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVA--YVNPALMINDYTG-GVI 149
CR D V +G + E M+ I+R GP+V V
Sbjct: 108 ASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHT 167
Query: 150 SHDARACNPHPSR-----LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWI 204
+D + + + H V++VG WG + G YWI
Sbjct: 168 DNDEVSDGDNDNFNPFELTNHAVLLVG--------------------WGEDEIKGEKYWI 207
Query: 205 VRNSWGPRWGYAGYAYVERGTNACGIE 231
V+NSWG WG GY + RGTN CGIE
Sbjct: 208 VKNSWGSSWGEKGYFKIRRGTNECGIE 234
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 76.8 bits (189), Expect = 5e-17
Identities = 51/209 (24%), Positives = 72/209 (34%), Gaps = 34/209 (16%)
Query: 29 AALLEAQFFIRHGELPS--LSVQQLIDCHNPENAA-NYGCQGGHAMSTFYYLQIAGGLQS 85
A LE+ + I+ GE LS Q L C N E N C GG +S L G+
Sbjct: 27 AYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPP 86
Query: 86 ERDYPFEGKQGACRYVLGQDV------VQVNDIFGLSGEKAMRHFIHRKGPVVA--YVNP 137
E DYP+ + + ++ + + ++ + + GPVVA V
Sbjct: 87 EEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYS 146
Query: 138 ALMINDYTGGVISHDARACNPHPSRL-THMVVIVGYGQSRAGVPYWIVRNSWGPRWGYES 196
G+I + L H VVIVGY
Sbjct: 147 GFD--RLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYD--------------------DNY 184
Query: 197 RAGVPYWIVRNSWGPRWGYAGYAYVERGT 225
G +IV+NSWG WG GY +
Sbjct: 185 VEGKGAFIVKNSWGTDWGDNGYGRISYED 213
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 78.2 bits (192), Expect = 7e-17
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 40/204 (19%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYL--QIAGGLQSERDY 89
+E+Q+ + +L LS QQL+ C + +N GC GG + F ++ + G + +E+ Y
Sbjct: 159 IESQWAVAGHKLVRLSEQQLVSCDHVDN----GCGGGLMLQAFEWVLRNMNGTVFTEKSY 214
Query: 90 PFEGKQGACRYVL-GQDVVQVNDIFGL----SGEKAMRHFIHRKGPVVAYVNPALMINDY 144
P+ G ++ I G S E+ M ++ + GP+ V+ + ++ Y
Sbjct: 215 PYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS-Y 273
Query: 145 TGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWI 204
GV++ +C +L H V++VGY + VPYW+
Sbjct: 274 HSGVLT----SCIG--EQLNHGVLLVGYNMT----------------------GEVPYWV 305
Query: 205 VRNSWGPRWGYAGYAYVERGTNAC 228
++NSWG WG GY V G NAC
Sbjct: 306 IKNSWGEDWGEKGYVRVTMGVNAC 329
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 78.3 bits (193), Expect = 9e-17
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 40/216 (18%)
Query: 33 EAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFE 92
E+Q+ IR EL SLS Q+L+DC + N GC GG + F + GGL SE DYP+
Sbjct: 300 ESQYAIRKNELVSLSEQELVDC----SFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYV 355
Query: 93 G-KQGACRYVLGQDVVQVNDIFGLSGEK---AMRHFIHRKGPVVAYVNPALMINDYTGGV 148
C ++ ++ + +K A+R GP+ + + Y GG+
Sbjct: 356 SDTPELCNIDRCKEKYKIKSYVSIPEDKFKEAIRFL----GPISVSIAVSDDFAFYKGGI 411
Query: 149 ISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP--YWIVR 206
+ C P+ H V++VGYG + +++ Y+I++
Sbjct: 412 FDGE---CGEEPN---HAVILVGYGMEEI--------------YNSDTKKMEKRYYYIIK 451
Query: 207 NSWGPRWGYAGYAYVE------RGTNACGIERVVIL 236
NSWG WG G+ +E T + G E V L
Sbjct: 452 NSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPL 487
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 75.4 bits (186), Expect = 2e-16
Identities = 59/219 (26%), Positives = 76/219 (34%), Gaps = 64/219 (29%)
Query: 45 SLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAG----GLQSERDYPFEGKQGACRY 100
LS Q L+ C + GC GG+ + + YL G G Q P
Sbjct: 52 LLSAQDLLSC---CSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPP 108
Query: 101 VLG--------QDVVQV---NDIF-------GLSGEKAMRHFIHRKGPVVAYVNPALMIN 142
G QD + D S E + I GPV A A +
Sbjct: 109 CCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQA----AFTVY 164
Query: 143 D----YTGGVISHDARACNPHPSRL--THMVVIVGYGQSRAGVPYWIVRNSWGPRWGYES 196
+ Y GV H + + H V I+G WG E+
Sbjct: 165 EDFLYYKSGVYQHTS-------GKQLGGHAVKIIG--------------------WGVEN 197
Query: 197 RAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
GVPYW+ NSWG WG GY + RG+N CGIE V+
Sbjct: 198 --GVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVV 234
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 73.2 bits (180), Expect = 1e-15
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 28/172 (16%)
Query: 39 RHGELPS--LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQ- 95
R G PS LSVQ +IDC + C GG + Y G + E P++ K
Sbjct: 48 RKGAWPSVYLSVQVVIDCAGGGS-----CHGGDPGGVYEYAHKHG-IPDETCNPYQAKDG 101
Query: 96 --------------GACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMI 141
G C + + V+D +SG M I+ +GP+ + +
Sbjct: 102 ECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEAL 161
Query: 142 NDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
+YTGGV +P H++ + G+G GV YWIVRNSWG WG
Sbjct: 162 ENYTGGVYKE--YVQDPLI---NHIISVAGWGVDENGVEYWIVRNSWGEPWG 208
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 72.7 bits (178), Expect = 1e-14
Identities = 45/135 (33%), Positives = 56/135 (41%), Gaps = 40/135 (29%)
Query: 116 SGEKAMRHFIHRKGPVVAYVNPALMINDYTGGV-----ISHDARACN---PHPS------ 161
+GEK M + I+R GP+VA + DY GV H AR C P +
Sbjct: 555 NGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPH-ARRCTVDLPKHNGVYNIT 613
Query: 162 ---RLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP--YWIVRNSWGPRWGYA 216
++ H +V+VG WG E G YWI RNSWG WG
Sbjct: 614 GWEKVNHAIVLVG--------------------WGEEEINGKLYKYWIGRNSWGKNWGKE 653
Query: 217 GYAYVERGTNACGIE 231
GY + RG N GIE
Sbjct: 654 GYFKIIRGKNFSGIE 668
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 50.7 bits (121), Expect = 2e-07
Identities = 51/222 (22%), Positives = 71/222 (31%), Gaps = 62/222 (27%)
Query: 46 LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPFEGKQGAC------- 98
LS + ++DC + GC GG + + G+ + Y G
Sbjct: 264 LSARHVLDC----SQYGQGCAGGFPEEVGKFAE-TFGILTTDSYYIPYDSGDGVERACKT 318
Query: 99 -----RYV------LGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVA--YVNPALMINDYT 145
RY LG V D + I+R GPV A Y N D
Sbjct: 319 RRPSRRYYFTNYGPLGGYYGAVTD------PDEIIWEIYRHGPVPASVYANSDWYNCDEN 372
Query: 146 GG------VISHDARACNPHPSR------LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWG 193
+ + A P R + H V+I+G+G G YW+V + WG
Sbjct: 373 STEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWG---- 428
Query: 194 YESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVI 235
R SW G + RG NA IE V+
Sbjct: 429 -----------SRRSWCDG----GTRKIARGVNAYNIESEVV 455
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 47.4 bits (112), Expect = 3e-06
Identities = 38/123 (30%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 119 KAMRHFIHRKGPVVAYVNPA-LMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRA 177
K ++ I KG V+AY+ ++ ++ G + + H V IVGYG
Sbjct: 681 KIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQNLCGDDTA-----DHAVNIVGYGN--- 732
Query: 178 GVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER-GTNACG---IERV 233
+I N E ++ YWIVRNSWG WG GY V+ G + C I V
Sbjct: 733 ----YI--NDED-----EKKS---YWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSV 778
Query: 234 VIL 236
VI
Sbjct: 779 VIF 781
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 41.4 bits (97), Expect = 2e-04
Identities = 30/120 (25%), Positives = 43/120 (35%), Gaps = 39/120 (32%)
Query: 130 PVVAYVNPALMINDYTG----GVI------------------SHDARACNPHP-----SR 162
PV +V A +I G I ++ C P+P
Sbjct: 204 PVTKHVQEAQIIPSRKKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVDSGEN 263
Query: 163 LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVE 222
H V+IVGY S + I +GP G +I++NSWG WG GY ++
Sbjct: 264 WGHAVLIVGYDDS-----FDINNFKYGP-------PGDGAFIIKNSWGTNWGENGYFWIS 311
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 30.4 bits (69), Expect = 0.74
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 159 HPSRLTHMVVIVGYGQSRAGVPY-WIVRNSWGPRWGYESRAGVPYWIVRNSW 209
S +TH +V+ G + G P W V NSWG G + Y+++ + W
Sbjct: 355 GESLMTHAMVLTGVDEDDDGKPTKWKVENSWGDDSGKKG-----YFVMSDEW 401
>gnl|CDD|240494 cd13736, SPRY_PRY_TRIM25, PRY/SPRY domain in tripartite
motif-containing domain 25 (TRIM25). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM25 proteins (composed of
RING/B-box/coiled-coil core and also known as RBCC
proteins). TRIM25 (also called Efp) ubiquitinates the N
terminus of the viral RNA receptor retinoic
acid-inducible gene-I (RIG-I) in response to viral
infection, leading to activation of the RIG-I signaling
pathway, thus resulting in type I interferon production
to limit viral replication. It has been shown that the
influenza A virus targets TRIM25 and disables its
antiviral function.
Length = 169
Score = 27.9 bits (62), Expect = 3.1
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 144 YTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNS------WGPRWGYESR 197
YT +S D HP R T ++G + G+ YW V G +G R
Sbjct: 18 YTKASVSDDPANYPEHPQRFTVCSQVLGTKCFKQGIHYWEVEMQSNNFCGLGICYGSMDR 77
Query: 198 AGVPYWIVRN--SWGPRW 213
G + RN SW W
Sbjct: 78 QGPSSRLGRNSESWCVEW 95
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 28.3 bits (64), Expect = 4.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 161 SRLTHMVVIVGYGQSRAGVPY-WIVRNSWGPRWGYESRAGVPYWIVRNSW 209
S +TH +V+ G G P W V NSWG + G G Y+++ + W
Sbjct: 356 SLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGK---KG--YFVMSDDW 400
Score = 27.6 bits (62), Expect = 6.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 203 WIVRNSWGPRWGYAGY 218
W V NSWG + G GY
Sbjct: 378 WKVENSWGEKVGKKGY 393
>gnl|CDD|234038 TIGR02865, spore_II_E, stage II sporulation protein E. Stage II
sporulation protein E (SpoIIE) is a multiple membrane
spanning protein with two separable functions. It plays
a role in the switch to polar cell division during
sporulation. By means of it protein phosphatase
activity, located in the C-terminal region, it activates
sigma-F. All proteins that score above the trusted
cutoff to this model are found in endospore-forming
Gram-positive bacteria. Surprisingly, a sequence from
the Cyanobacterium-like (and presumably
non-spore-forming) photosynthesizer Heliobacillus
mobilis is homologous, and scores between the trusted
and noise cutoffs [Cellular processes, Sporulation and
germination].
Length = 764
Score = 28.5 bits (64), Expect = 4.1
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 104 QDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRL 163
+DV+ N G + +G + P +I++ TG ++ C+ P
Sbjct: 482 EDVLAYNTEGGNIDVELTIAACGGRGECEKKIAP--IISEVTGELMCVKDERCSIDPKGR 539
Query: 164 TH 165
H
Sbjct: 540 CH 541
>gnl|CDD|224180 COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid
metabolism].
Length = 362
Score = 27.7 bits (62), Expect = 5.2
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 2 KRFEESSVPIPGLGERGGAKNVCTPLHAALLEAQFFIRHG 41
+ FEE +PI G+ ++ T LH L AQ F G
Sbjct: 178 ELFEEKGLPI--AGDDIKSQTGATILHRVL--AQLFADRG 213
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 27.5 bits (61), Expect = 7.2
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 9/31 (29%)
Query: 173 GQSRAGVPYWIVRNSWGPRWGYESR-AGVPY 202
GQ+ AGVP W + G ESR GVPY
Sbjct: 1052 GQALAGVPLW--------KLGPESRHPGVPY 1074
>gnl|CDD|224249 COG1330, RecC, Exonuclease V gamma subunit [DNA replication,
recombination, and repair].
Length = 1078
Score = 27.3 bits (61), Expect = 8.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 89 YPFEGKQGACRYVLGQDVVQVNDIFGLSGEKAMR--HFIHR 127
Y + G Q V+ +++ GL E A + HF+ R
Sbjct: 502 YAMDEDAGE-----WQGVLPYDEVGGLRAELAGKLAHFLER 537
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.457
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,671,287
Number of extensions: 1193795
Number of successful extensions: 838
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 29
Length of query: 240
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 146
Effective length of database: 6,768,326
Effective search space: 988175596
Effective search space used: 988175596
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)