RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7632
(240 letters)
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase;
HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Length = 214
Score = 160 bits (407), Expect = 2e-49
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 30/200 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q+F+ G L SLS Q+L+DC + + C GG + + ++ GGL++E DY +
Sbjct: 34 VEGQWFLNQGTLLSLSEQELLDC----DKMDKACMGGLPSNAYSAIKNLGGLETEDDYSY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG-EKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
+G +C++ + V + D LS E+ + ++ ++GP+ +N A + Y G+
Sbjct: 90 QGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAIN-AFGMQFYRHGISR 148
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWG 210
C+P + H V++VGYG R+ VP+W ++NSWG
Sbjct: 149 PLRPLCSP--WLIDHAVLLVGYG----------------------QRSDVPFWAIKNSWG 184
Query: 211 PRWGYAGYAYVERGTNACGI 230
WG GY Y+ RG+ ACG+
Sbjct: 185 TDWGEKGYYYLHRGSGACGV 204
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase,
aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP:
d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Length = 220
Score = 156 bits (396), Expect = 1e-47
Identities = 66/203 (32%), Positives = 102/203 (50%), Gaps = 32/203 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE+ I G++ SL+ QQL+DC N N+GCQGG F Y++ G+ E YP+
Sbjct: 35 LESAVAIATGKMLSLAEQQLVDCAQNFN--NHGCQGGLPSQAFEYIRYNKGIMGEDTYPY 92
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPV-VAY-VNPALMINDYTGG 147
+G+ C++ + + V D+ ++ E+AM + PV A+ V ++ Y G
Sbjct: 93 KGQDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLM--YRKG 150
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
+ + +C+ P ++ H V+ VGYG G+PYWIV+N
Sbjct: 151 IY--SSTSCHKTPDKVNHAVLAVGYG----------------------EENGIPYWIVKN 186
Query: 208 SWGPRWGYAGYAYVERGTNACGI 230
SWGP+WG GY +ERG N CG+
Sbjct: 187 SWGPQWGMNGYFLIERGKNMCGL 209
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease,
hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo
sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A*
1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Length = 441
Score = 154 bits (390), Expect = 1e-44
Identities = 57/211 (27%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 32 LEAQFFIRHG--ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
LEA+ I + P LS Q+++ C + GC+GG GL E +
Sbjct: 243 LEARIRILTNNSQTPILSPQEVVSC----SQYAQGCEGGFPYLIAGKYAQDFGLVEEACF 298
Query: 90 PFEGKQGACRY------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPV-VAY-VNPALMI 141
P+ G C+ + V +G E M+ + GP+ VA+ V +
Sbjct: 299 PYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLH 358
Query: 142 NDYTGGVISHDARACNPHPSR-LTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGV 200
Y G+ H +P H V++VG +G +S +G+
Sbjct: 359 --YKKGIYHHTGLRDPFNPFELTNHAVLLVG--------------------YGTDSASGM 396
Query: 201 PYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
YWIV+NSWG WG GY + RGT+ C IE
Sbjct: 397 DYWIVKNSWGTGWGENGYFRIRRGTDECAIE 427
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 149 bits (379), Expect = 4e-44
Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQG--NEGCNGGLMDYAFQYVQDNGGLDSEESYPY 187
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG-EKAMRHFIHRKGPVVAYVN---PALMINDYTGG 147
E + +C+Y V + EKA+ + GP+ ++ + + Y G
Sbjct: 188 EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 245
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
+ C+ + H V++VGYG YW+V+N
Sbjct: 246 IY--FEPDCS--SEDMDHGVLVVGYGFES------------------TESDNNKYWLVKN 283
Query: 208 SWGPRWGYAGYAYVERGT-NACGI 230
SWG WG GY + + N CGI
Sbjct: 284 SWGEEWGMGGYVKMAKDRRNHCGI 307
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen,
cysteine protease, house DUST mite, dermatop
pteronyssinus; 1.61A {Dermatophagoides pteronyssinus}
SCOP: d.3.1.1
Length = 312
Score = 148 bits (377), Expect = 6e-44
Identities = 44/211 (20%), Positives = 66/211 (31%), Gaps = 52/211 (24%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
E+ + + L+ Q+L+DC A+ +GC G Y+ G+ E Y +
Sbjct: 123 TESAYLAYRDQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRY 176
Query: 92 EGKQGACRY-------VLGQDVVQVNDIFGLSGEKAMRHFI-HRKGPVV----AYVNPAL 139
++ +CR + + + +R + + A
Sbjct: 177 VAREQSCRRPNAQRFGISNYCQIYPPN------ANKIREALAQTHSAIAVIIGIKDLDAF 230
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
Y G I R H V IVGY + G
Sbjct: 231 RH--YDGRTI--IQRDNGY--QPNYHAVNIVGYS----------------------NAQG 262
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNACGI 230
V YWIVRNSW WG GY Y + I
Sbjct: 263 VDYWIVRNSWDTNWGDNGYGYFAANIDLMMI 293
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 144 bits (367), Expect = 2e-43
Identities = 64/204 (31%), Positives = 88/204 (43%), Gaps = 31/204 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q F + G L SLS Q L+DC P+ N GC GG F Y+Q GGL SE YP+
Sbjct: 34 LEGQMFRKTGRLISLSEQNLVDCSGPQG--NEGCNGGLMDYAFQYVQDNGGLDSEESYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG-EKAMRHFIHRKGPV-VAY--VNPALMINDYTGG 147
E + +C+Y V + EKA+ + GP+ VA + + + Y G
Sbjct: 92 EATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLF--YKEG 149
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
+ C+ + H V++VGYG YW+V+N
Sbjct: 150 IY--FEPDCS--SEDMDHGVLVVGYGFES------------------TESDNNKYWLVKN 187
Query: 208 SWGPRWGYAGYAYVERGT-NACGI 230
SWG WG GY + + N CGI
Sbjct: 188 SWGEEWGMGGYVKMAKDRRNHCGI 211
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein,
hydrola protease, secreted, thiol protease; HET: P6G;
1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A
3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Length = 222
Score = 143 bits (364), Expect = 6e-43
Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 40/205 (19%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
E+ + + L+ Q+L+DC A+ +GC G Y+ G+ E Y +
Sbjct: 43 TESAYLAYRQQSLDLAEQELVDC-----ASQHGCHGDTIPRGIEYI-QHNGVVQESYYRY 96
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL--SGEKAMRHFI-HRKGPVVAYVNPALMIND---YT 145
++ +CR +++ + +R + + + ++ Y
Sbjct: 97 VAREQSCRRP-NAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIG-IKDLDAFRHYD 154
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIV 205
G I R H V IVGY + GV YWIV
Sbjct: 155 GRTI--IQRDNGY--QPNYHAVNIVGYS----------------------NAQGVDYWIV 188
Query: 206 RNSWGPRWGYAGYAYVERGTNACGI 230
RNSW WG GY Y + I
Sbjct: 189 RNSWDTNWGDNGYGYFAANIDLMMI 213
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut;
1.85A {Tenebrio molitor}
Length = 331
Score = 145 bits (369), Expect = 2e-42
Identities = 66/204 (32%), Positives = 87/204 (42%), Gaps = 35/204 (17%)
Query: 32 LEAQFFIRHGEL--PSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDY 89
+E+Q I +G S+S QQL+DC GC GG F Y+ GG+ SE Y
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDC----VPNALGCSGGWMNDAFTYVAQNGGIDSEGAY 204
Query: 90 PFEGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVNPALMINDYTGG 147
P+E G C Y Q +++ LSG E + + KGPV + Y+GG
Sbjct: 205 PYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGG 264
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
V C ++ TH V+IVGYG G YW+V+N
Sbjct: 265 VY--YNPTCET--NKFTHAVLIVGYGNEN----------------------GQDYWLVKN 298
Query: 208 SWGPRWGYAGYAYVERGT-NACGI 230
SWG WG GY + R N CGI
Sbjct: 299 SWGDGWGLDGYFKIARNANNHCGI 322
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A
{Plasmodium falciparum} PDB: 3bpm_A*
Length = 243
Score = 143 bits (363), Expect = 2e-42
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 28/204 (13%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+Q+ IR L S Q+L+DC + N GC GG+ + F + GGL S+ DYP+
Sbjct: 53 VESQYAIRKKALFLFSEQELVDC----SVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPY 108
Query: 92 EGK-QGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
C + + + + + + GP+ + + Y GG
Sbjct: 109 VSNLPETCNLKRCNERYTIKSYVSIP-DDKFKEALRYLGPISISIAASDDFAFYRGGFYD 167
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWG 210
+ C + H V++VGYG Y+I++NSWG
Sbjct: 168 GE---CG---AAPNHAVILVGYGMKD------------IYNEDTGRMEKFYYYIIKNSWG 209
Query: 211 PRWGYAGYAYVERGTNA----CGI 230
WG GY +E N C I
Sbjct: 210 SDWGEGGYINLETDENGYKKTCSI 233
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular
interaction, HY hydrolase inhibitor complex; 2.20A
{Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A
3bpf_A* 3pnr_A
Length = 241
Score = 142 bits (360), Expect = 4e-42
Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+Q+ IR +L +LS Q+L+DC + NYGC GG + F + GG+ + DYP+
Sbjct: 51 VESQYAIRKNKLITLSEQELVDC----SFKNYGCNGGLINNAFEDMIELGGICPDGDYPY 106
Query: 92 EGKQ-GACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVIS 150
C + + + + + ++ + GP+ V + Y G+
Sbjct: 107 VSDAPNLCNIDRCTEKYGIKNYLSVP-DNKLKEALRFLGPISISVAVSDDFAFYKEGIFD 165
Query: 151 HDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWG 210
+ C +L H V++VG+G + Y+I++NSWG
Sbjct: 166 GE---CG---DQLNHAVMLVGFGMKE------------IVNPLTKKGEKHYYYIIKNSWG 207
Query: 211 PRWGYAGYAYVERGTNA----CGI 230
+WG G+ +E + CG+
Sbjct: 208 QQWGERGFINIETDESGLMRKCGL 231
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 143 bits (364), Expect = 7e-42
Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 190
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
+ C+Y + L E ++ + KGPV V+ P+ + Y
Sbjct: 191 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 248
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV +C + H V++VGYG G YW+V+
Sbjct: 249 GVY--YEPSCT---QNVNHGVLVVGYGDLN----------------------GKEYWLVK 281
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG +G GY + R N CGI
Sbjct: 282 NSWGHNFGEEGYIRMARNKGNHCGI 306
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 143 bits (363), Expect = 8e-42
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 36/204 (17%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q+ S S QQL+DC P N GC GG + + YL+ GL++E YP+
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPWG--NNGCGGGLMENAYQYLK-QFGLETESSYPY 181
Query: 92 EGKQGACRYVLGQDVVQVNDIFGL-SG-EKAMRHFIHRKGPV-VA-YVNPALMINDYTGG 147
+G CRY V +V + + SG E +++ + +GP VA V M+ Y G
Sbjct: 182 TAVEGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMM--YRSG 239
Query: 148 VISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRN 207
+ ++ C+P R+ H V+ VGYG ++ G YWIV+N
Sbjct: 240 IY--QSQTCSP--LRVNHAVLAVGYG----------------------TQGGTDYWIVKN 273
Query: 208 SWGPRWGYAGYAYVERGT-NACGI 230
SWG WG GY + R N CGI
Sbjct: 274 SWGLSWGERGYIRMVRNRGNMCGI 297
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 143 bits (363), Expect = 8e-42
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 38/205 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDC----VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 188
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
G++ +C Y + + EKA++ + R GPV ++ + Y+
Sbjct: 189 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQF--YSK 246
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV +CN L H V+ VGYG + G +WI++
Sbjct: 247 GVY--YDESCN--SDNLNHAVLAVGYGIQK----------------------GNKHWIIK 280
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG WG GY + R NACGI
Sbjct: 281 NSWGENWGNKGYILMARNKNNACGI 305
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 143 bits (363), Expect = 1e-41
Identities = 66/202 (32%), Positives = 93/202 (46%), Gaps = 32/202 (15%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E Q ++ G L SLS Q LIDC + N GC GG S F Y+ G+ SE YP+
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSYG--NAGCDGGWMDSAFSYI-HDYGIMSESAYPY 204
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVNPALMINDYTGGVI 149
E + CR+ Q V ++ + L E ++ + + GPV ++ + Y+GG+
Sbjct: 205 EAQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLF 264
Query: 150 SHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+ CN S L H V++VGYG S G YWI++NSW
Sbjct: 265 --YDQTCNQ--SDLNHGVLVVGYG----------------------SDNGQDYWILKNSW 298
Query: 210 GPRWGYAGYAYVERGT-NACGI 230
G WG +GY R N CGI
Sbjct: 299 GSGWGESGYWRQVRNYGNNCGI 320
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol
protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi}
PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A*
1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A*
1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A*
...
Length = 215
Score = 139 bits (353), Expect = 3e-41
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 39/205 (19%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIA--GGLQSERDY 89
+E Q+F+ L +LS Q L+ C + + GC GG + F ++ G + +E Y
Sbjct: 34 VECQWFLAGHPLTNLSEQMLVSC----DKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSY 89
Query: 90 PFEGKQG---ACRYVLGQDVVQVNDIFGL-SGEKAMRHFIHRKGPVVAYVNPALMINDYT 145
P+ +G C + L E + ++ GPV V+ A YT
Sbjct: 90 PYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVD-ASSWMTYT 148
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIV 205
GGV+ + +L H V++VGY A VPYWI+
Sbjct: 149 GGVM------TSCVSEQLDHGVLLVGYN----------------------DSAAVPYWII 180
Query: 206 RNSWGPRWGYAGYAYVERGTNACGI 230
+NSW +WG GY + +G+N C +
Sbjct: 181 KNSWTTQWGEEGYIRIAKGSNQCLV 205
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 139 bits (352), Expect = 4e-41
Identities = 61/205 (29%), Positives = 88/205 (42%), Gaps = 36/205 (17%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LEAQ ++ G+L SLS Q L+DC + E N GC GG + F Y+ G+ S+ YP+
Sbjct: 35 LEAQLKLKTGKLVSLSAQNLVDC-STEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 93
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPV-VAY--VNPALMINDYTG 146
+ C+Y + L E ++ + KGPV V +P+ + Y
Sbjct: 94 KAMDQKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL--YRS 151
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV +C + H V++VGYG G YW+V+
Sbjct: 152 GVY--YEPSCT---QNVNHGVLVVGYGDLN----------------------GKEYWLVK 184
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG +G GY + R N CGI
Sbjct: 185 NSWGHNFGEEGYIRMARNKGNHCGI 209
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 138 bits (351), Expect = 1e-40
Identities = 63/212 (29%), Positives = 95/212 (44%), Gaps = 44/212 (20%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+EA I G L SLS Q+LIDC + GC G +F ++ GG+ SE DYP+
Sbjct: 35 IEAAHAIATGNLVSLSEQELIDC----VDESEGCYNGWHYQSFEWVVKHGGIASEADYPY 90
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG---------EKAMRHFIHRKGPVVAYVNPALMIN 142
+ + G C+ QD V +++ E +++ F+ + P+ ++
Sbjct: 91 KARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVL-EQPISVSIDAKDFHF 149
Query: 143 DYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPY 202
Y+GG+ +D C+ P + H V+IVGYG S GV Y
Sbjct: 150 -YSGGI--YDGGNCSS-PYGINHFVLIVGYG----------------------SEDGVDY 183
Query: 203 WIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
WI +NSWG WG GY ++R T CG+
Sbjct: 184 WIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGM 215
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 137 bits (348), Expect = 1e-40
Identities = 63/205 (30%), Positives = 92/205 (44%), Gaps = 38/205 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE Q + G+L +LS Q L+DC + N GC GG+ + F Y+Q G+ SE YP+
Sbjct: 34 LEGQLKKKTGKLLNLSPQNLVDC----VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
G++ +C Y + + EKA++ + R GPV ++ + Y+
Sbjct: 90 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQF--YSK 147
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV +CN L H V+ VGYG + G +WI++
Sbjct: 148 GVY--YDESCN--SDNLNHAVLAVGYG----------------------IQKGNKHWIIK 181
Query: 207 NSWGPRWGYAGYAYVERGT-NACGI 230
NSWG WG GY + R NACGI
Sbjct: 182 NSWGENWGNKGYILMARNKNNACGI 206
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 135 bits (342), Expect = 1e-39
Identities = 59/207 (28%), Positives = 85/207 (41%), Gaps = 39/207 (18%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
LE + G+L SLS Q+L+DC E N C GG F Y+ +GG+ SE YP+
Sbjct: 40 LEGAHCAKTGKLVSLSEQELMDCSRAEG--NQSCSGGEMNDAFQYVLDSGGICSEDAYPY 97
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPV-VAY--VNPALMINDYTG 146
+ CR + VV++ + E AM+ + K PV +A Y
Sbjct: 98 LARDEECRAQSCEKVVKILGFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQF--YHE 154
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
GV C + L H V++VGY G + + +WI++
Sbjct: 155 GVFDAS---CG---TDLDHGVLLVGY--------------------GTDKESKKDFWIMK 188
Query: 207 NSWGPRWGYAGYAYVERGT---NACGI 230
NSWG WG GY Y+ CG+
Sbjct: 189 NSWGTGWGRDGYMYMAMHKGEEGQCGL 215
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease,
cathepsin, hydrolase, glycoprotein, thiol protease; HET:
DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Length = 265
Score = 135 bits (341), Expect = 5e-39
Identities = 48/230 (20%), Positives = 74/230 (32%), Gaps = 54/230 (23%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTF-YYLQIAGGLQSERDYP 90
LE ++ E +S + +C+ E+ C G + F ++ G L +E +YP
Sbjct: 43 LETIRCMKGYEPTKISALYVANCYKGEH--KDRCDEGSSPMEFLQIIEDYGFLPAESNYP 100
Query: 91 FEGKQ------------------GACRY---------VLGQDVVQVNDIFGL--SGEKAM 121
+ + G + G + + K +
Sbjct: 101 YNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKII 160
Query: 122 RHFIHRKGPVVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPY 181
+ + KG V+AY+ ++ G + C H V IVGYG
Sbjct: 161 KTEVMNKGSVIAYIKAENVMGYEFSGKKVKNL--CGD--DTADHAVNIVGYGNY------ 210
Query: 182 WIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVER-GTNACGI 230
YWIVRNSWGP WG GY V+ G C
Sbjct: 211 -----------VNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHF 249
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya}
SCOP: d.3.1.1 PDB: 1meg_A*
Length = 216
Score = 133 bits (337), Expect = 7e-39
Identities = 58/215 (26%), Positives = 85/215 (39%), Gaps = 58/215 (26%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E IR G+L LS Q+L+DC ++GC+GG+ Y+ G+ YP+
Sbjct: 34 VEGINKIRTGKLVELSEQELVDC----ERRSHGCKGGYPPYALEYV-AKNGIHLRSKYPY 88
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
+ KQG CR G VQ N+ E + + I K PV V
Sbjct: 89 KAKQGTCRAKQVGGPIVKTSGVGRVQPNN------EGNLLNAIA-KQPVSVVVESKGRPF 141
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
+ Y GG+ C +++ H V VGYG+S G
Sbjct: 142 QL--YKGGIFEGP---CG---TKVDHAVTAVGYGKS----------------------GG 171
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
Y +++NSWG WG GY ++R CG+
Sbjct: 172 KGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 206
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 133 bits (336), Expect = 9e-39
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 44/208 (21%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G+L SLS QQL+DC AN+GC+GG F ++ GG+ SE YP+
Sbjct: 36 VEGINQIVTGDLISLSEQQLVDC----TTANHGCRGGWMNPAFQFIVNNGGINSEETYPY 91
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMINDYTG 146
G+ G C + VV ++ + E++++ + PV ++ + Y
Sbjct: 92 RGQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAV-ANQPVSVTMDAAGRDFQL--YRS 148
Query: 147 GVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVR 206
G+ + CN H + +VGYG + +WIV+
Sbjct: 149 GIFTGS---CN---ISANHALTVVGYG----------------------TENDKDFWIVK 180
Query: 207 NSWGPRWGYAGYAYVERGTNA----CGI 230
NSWG WG +GY ER CGI
Sbjct: 181 NSWGKNWGESGYIRAERNIENPDGKCGI 208
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 132 bits (335), Expect = 1e-38
Identities = 59/214 (27%), Positives = 88/214 (41%), Gaps = 54/214 (25%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G+L SLS Q+L+DC +N GC GG F ++ GG+ +E +YP+
Sbjct: 34 VEGINKIATGDLISLSEQELVDCGRTQN--TRGCDGGFMTDGFQFIINNGGINTEANYPY 91
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPV-VAY--VNPAL 139
++G C + + V N+ E A++ + PV VA
Sbjct: 92 TAEEGQCNLDLQQEKYVSIDTYENVPYNN------EWALQTAVA-YQPVSVALEAAGYNF 144
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
Y+ G+ + C + + H V IVGYG + G
Sbjct: 145 QH--YSSGIFTGP---CG---TAVDHAVTIVGYG----------------------TEGG 174
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERG---TNACGI 230
+ YWIV+NSWG WG GY ++R CGI
Sbjct: 175 IDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 132 bits (335), Expect = 2e-38
Identities = 63/215 (29%), Positives = 89/215 (41%), Gaps = 55/215 (25%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I+ +L SLS Q+L+DC +N GC GG F +++ GG+ +E +YP+
Sbjct: 35 VEGINQIKTNKLVSLSEQELVDCDTDQN---QGCNGGLMDYAFEFIKQRGGITTEANYPY 91
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
E G C + G + V ND E A+ + PV ++
Sbjct: 92 EAYDGTCDVSKENAPAVSIDGHENVPEND------ENALLKAV-ANQPVSVAIDAGGSDF 144
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
Y+ GV + C + L H V IVGYG + G YW V+NSWGP WG +
Sbjct: 145 QF--YSEGVFTGS---CG---TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEK---- 192
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGT----NACGI 230
GY +ERG CGI
Sbjct: 193 -----------------GYIRMERGISDKEGLCGI 210
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 132 bits (335), Expect = 3e-38
Identities = 67/212 (31%), Positives = 92/212 (43%), Gaps = 46/212 (21%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E IR G L SLS Q+LIDC +N GCQGG + F Y++ GGL +E YP+
Sbjct: 37 VEGINAIRTGSLVSLSEQELIDCDTADN---DGCQGGLMDNAFEYIKNNGGLITEAAYPY 93
Query: 92 EGKQGACRYVLGQD----VVQVNDIFGLSG--EKAMRHFIHRKGPVVAYVN---PALMIN 142
+G C VV ++ + E+ + + PV V A M
Sbjct: 94 RAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAV-ANQPVSVAVEASGKAFMF- 151
Query: 143 DYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPY 202
Y+ GV + + C + L H V +VGYG + G YW V+NSWGP WG +
Sbjct: 152 -YSEGVFTGE---CG---TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQ------- 197
Query: 203 WIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
GY VE+ + A CGI
Sbjct: 198 --------------GYIRVEKDSGASGGLCGI 215
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 130 bits (329), Expect = 1e-37
Identities = 64/213 (30%), Positives = 97/213 (45%), Gaps = 55/213 (25%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+ IR G+L SLS Q+L+DC + A++GC GG + F Y+ GG+ ++++YP+
Sbjct: 34 VESINKIRTGQLISLSEQELVDC----DTASHGCNGGWMNNAFQYIITNGGIDTQQNYPY 89
Query: 92 EGKQGACRY-------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPV-VAY--VNPALMI 141
QG+C+ + G V N+ E A++ + PV V
Sbjct: 90 SAVQGSCKPYRLRVVSINGFQRVTRNN------ESALQSAVA-SQPVSVTVEAAGAPFQH 142
Query: 142 NDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVP 201
Y+ G+ + C + H VVIVGYG +++G
Sbjct: 143 --YSSGIFTGP---CG---TAQNHGVVIVGYG----------------------TQSGKN 172
Query: 202 YWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
YWIVRNSWG WG GY ++ER + CGI
Sbjct: 173 YWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase;
HET: E64 SO4; 1.87A {Carica candamarcensis}
Length = 213
Score = 130 bits (329), Expect = 1e-37
Identities = 58/215 (26%), Positives = 83/215 (38%), Gaps = 62/215 (28%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G+L SLS Q+L+DC +YGC+GG + Y+ G+ + YP+
Sbjct: 34 VEGINKIVTGQLLSLSEQELLDC----ERRSYGCRGGFPLYALQYV-ANSGIHLRQYYPY 88
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
EG Q CR G V N+ E+A+ I PV V A
Sbjct: 89 EGVQRQCRASQAKGPKVKTDGVGRVPRNN------EQALIQRIA-IQPVSIVVEAKGRAF 141
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
Y GG+ + C + + H V VGYG
Sbjct: 142 QN--YRGGIFAGP---CG---TSIDHAVAAVGYGN------------------------- 168
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
Y +++NSWG WG GY ++RG+ CG+
Sbjct: 169 -DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGV 202
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH
2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP:
d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Length = 208
Score = 130 bits (328), Expect = 1e-37
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E+ IR G L SLS Q+L+DC + N+GC GG + + Y+ GG+ ++ +YP+
Sbjct: 34 VESINQIRTGNLISLSEQELVDC----DKKNHGCLGGAFVFAYQYIINNGGIDTQANYPY 89
Query: 92 EGKQGACRY------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYT 145
+ QG C+ + G + V + E A++ + + VA + Y+
Sbjct: 90 KAVQGPCQAASKVVSIDGYNGVPFCN------EXALKQAVAVQPSTVAIDASSAQFQQYS 143
Query: 146 GGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIV 205
G+ S P ++L H V IVGY YWIV
Sbjct: 144 SGIFS------GPCGTKLNHGVTIVGYQA--------------------------NYWIV 171
Query: 206 RNSWGPRWGYAGYAYVER--GTNACGI 230
RNSWG WG GY + R G CGI
Sbjct: 172 RNSWGRYWGEKGYIRMLRVGGCGLCGI 198
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET:
E64; 2.10A {Jacaratia mexicana}
Length = 214
Score = 129 bits (328), Expect = 2e-37
Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 62/215 (28%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G+L SLS Q+L+DC ++GC GG+ ++ Y+ + G+ +ER+YP+
Sbjct: 34 IEGINKIITGQLISLSEQELLDC----ERRSHGCDGGYQTTSLQYV-VDNGVHTEREYPY 88
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
E KQG CR + G V ND E ++ I PV +
Sbjct: 89 EKKQGRCRAKDKKGPKVYITGYKYVPAND------EISLIQAI-ANQPVSVVTDSRGRGF 141
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
Y GG+ C + H V VGYG+
Sbjct: 142 QF--YKGGIYEGP---CG---TNTDHAVTAVGYGK------------------------- 168
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGT----NACGI 230
Y +++NSWGP WG GY ++R + CG+
Sbjct: 169 -TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGV 202
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 132 bits (335), Expect = 2e-37
Identities = 57/215 (26%), Positives = 84/215 (39%), Gaps = 58/215 (26%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E IR G+L LS Q+L+DC ++GC+GG+ Y+ G+ YP+
Sbjct: 140 VEGINKIRTGKLVELSEQELVDC----ERRSHGCKGGYPPYALEYV-AKNGIHLRSKYPY 194
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
+ KQG CR G VQ N+ E + + I K PV V
Sbjct: 195 KAKQGTCRAKQVGGPIVKTSGVGRVQPNN------EGNLLNAI-AKQPVSVVVESKGRPF 247
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
+ Y GG+ C +++ V VGYG+S G
Sbjct: 248 QL--YKGGIFEGP---CG---TKVDGAVTAVGYGKS----------------------GG 277
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
Y +++NSWG WG GY ++R CG+
Sbjct: 278 KGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGL 312
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP,
cysteine protease, allergen, protease, thiol protease;
1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B
3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A*
1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A*
5pad_A* 6pad_A* ...
Length = 212
Score = 129 bits (327), Expect = 2e-37
Identities = 56/215 (26%), Positives = 80/215 (37%), Gaps = 62/215 (28%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E IR G L S Q+L+DC + +YGC GG+ S + G+ YP+
Sbjct: 34 IEGIIKIRTGNLNQYSEQELLDC----DRRSYGCNGGYPWSALQLV-AQYGIHYRNTYPY 88
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
EG Q CR G VQ + E A+ + I PV +
Sbjct: 89 EGVQRYCRSREKGPYAAKTDGVRQVQPYN------EGALLYSI-ANQPVSVVLEAAGKDF 141
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
+ Y GG+ C +++ H V VGYG
Sbjct: 142 QL--YRGGIFVGP---CG---NKVDHAVAAVGYGP------------------------- 168
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
Y +++NSWG WG GY ++RGT CG+
Sbjct: 169 -NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGL 202
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 127 bits (321), Expect = 2e-36
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 58/215 (26%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G L LS Q+L+DC + +YGC+GG+ ++ Y+ G+ + + YP+
Sbjct: 34 VEGINKIVTGNLLELSEQELVDC----DKHSYGCKGGYQTTSLQYV-ANNGVHTSKVYPY 88
Query: 92 EGKQGACRY---------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVN---PAL 139
+ KQ CR + G V N E + + P+ V
Sbjct: 89 QAKQYKCRATDKPGPKVKITGYKRVPSNC------ETSFLGAL-ANQPLSVLVEAGGKPF 141
Query: 140 MINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAG 199
+ Y GV C ++L H V VGYG + G
Sbjct: 142 QL--YKSGVFDGP---CG---TKLDHAVTAVGYG----------------------TSDG 171
Query: 200 VPYWIVRNSWGPRWGYAGYAYVERGTNA----CGI 230
Y I++NSWGP WG GY ++R + CG+
Sbjct: 172 KNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGV 206
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 124 bits (314), Expect = 7e-35
Identities = 56/229 (24%), Positives = 81/229 (35%), Gaps = 56/229 (24%)
Query: 32 LEAQFFIRHG---ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERD 88
+ + I+ LSVQ +IDC N C+GG+ +S + Y G+ E
Sbjct: 75 MADRINIKRKGAWPSTLLSVQNVIDCGN-----AGSCEGGNDLSVWDYAH-QHGIPDETC 128
Query: 89 YPFEGKQGACRY---------------VLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVA 133
++ K C + + +V D LSG + M I+ GP+
Sbjct: 129 NNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISC 188
Query: 134 --YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPR 191
L +YTGG+ + + H+V + G
Sbjct: 189 GIMATERLA--NYTGGIYAE--YQDTT---YINHVVSVAG-------------------- 221
Query: 192 WGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIERVVILAAIE 240
WG G YWIVRNSWG WG G+ + T G L AIE
Sbjct: 222 WGISD--GTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNL-AIE 267
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase,
peptidase_C1A, hydrolase, in form; 1.31A {Crocus
sativus}
Length = 222
Score = 122 bits (308), Expect = 1e-34
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 30/203 (14%)
Query: 32 LEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERDYPF 91
+E I G L S+S QQ++DC + GG A F ++ GG+ S+ +YP+
Sbjct: 34 IEGIDAITTGRLISVSEQQIVDC----DTXXXXXXGGDADDAFRWVITNGGIASDANYPY 89
Query: 92 EGKQGACRYVLGQDVVQVNDIFGLSGEKAMRHFIHRKGPVVAYVNPALMINDYTGGVISH 151
G G C +++ + + K PV + + G
Sbjct: 90 TGVDGTCDLN-KPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGIF 148
Query: 152 DARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGP 211
+C+ P+ + H V+IVGYG + YWIV+NSWG WG +
Sbjct: 149 AGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGID---------------- 192
Query: 212 RWGYAGYAYVERGTNA----CGI 230
GY + R TN C I
Sbjct: 193 -----GYILIRRNTNRPDGVCAI 210
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO
protease; HET: 074; 1.60A {Trypanosoma brucei} PDB:
3mor_A*
Length = 325
Score = 117 bits (294), Expect = 1e-31
Identities = 52/232 (22%), Positives = 76/232 (32%), Gaps = 62/232 (26%)
Query: 29 AALLEAQFFIRHG-ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSER 87
A+ + +F G + +S L+ C + GC GG + Y + GL S+
Sbjct: 106 ASAMSDRFCTMGGVQDVHISAGDLLACCSDCG---DGCNGGDPDRAWAYFS-STGLVSDY 161
Query: 88 DYPFEGKQGA---------------------CRYVLGQDVVQVNDIFG-----LSGEKAM 121
P+ + C Y + V + L GE
Sbjct: 162 CQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDY 221
Query: 122 RHFIHRKGPVVA--YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGV 179
+ +GP V + Y GV H + H V +VG
Sbjct: 222 MRELFFRGPFEVAFDVYEDFI--AYNSGVYHHVS-----GQYLGGHAVRLVG-------- 266
Query: 180 PYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
WG + GVPYW + NSW WG GY + RG++ CGIE
Sbjct: 267 ------------WGTSN--GVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 304
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco
hydrolase, lysosome, protease, thiol protease, zymogen,
CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A*
3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A*
1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A*
1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Length = 266
Score = 108 bits (273), Expect = 5e-29
Identities = 48/240 (20%), Positives = 71/240 (29%), Gaps = 68/240 (28%)
Query: 29 AALLEAQFFIRHGELPS--LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGG---- 82
+ + I S +S + L+ C GC GG+ + + G
Sbjct: 41 VEAISDRICIHTNAHVSVEVSAEDLLTCCGSMC--GDGCNGGYPAEAWNFWTRKGLVSGG 98
Query: 83 --LQSERDYPFEGKQGACRY--------------------------VLGQDVVQVNDIFG 114
P+ QD + +
Sbjct: 99 LYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYS 158
Query: 115 LSG-EKAMRHFIHRKGPVVA--YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVG 171
+S EK + I++ GPV V + Y GV H H + I+G
Sbjct: 159 VSNSEKDIMAEIYKNGPVEGAFSVYSDFL--LYKSGVYQH--VTGEMM---GGHAIRILG 211
Query: 172 YGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGIE 231
WG E+ G PYW+V NSW WG G+ + RG + CGIE
Sbjct: 212 --------------------WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGIE 249
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 106 bits (268), Expect = 2e-28
Identities = 49/241 (20%), Positives = 74/241 (30%), Gaps = 70/241 (29%)
Query: 29 AALLEAQFFIRHG--ELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSE 86
+ + I+ G + LS L+ C GC+GG + Y G +
Sbjct: 37 VEAMSDRSCIQSGGKQNVELSAVDLLSCCESCG---LGCEGGILGPAWDYWVKEGIVTGS 93
Query: 87 --------RDYPFEGKQGACRYVL-------------------GQDVVQVNDIF------ 113
YPF + + D
Sbjct: 94 SKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSY 153
Query: 114 -GLSGEKAMRHFIHRKGPVVA--YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIV 170
+ EKA++ I + GPV A V + +Y G+ H + H + I+
Sbjct: 154 NVKNDEKAIQKEIMKYGPVEAGFTVYEDFL--NYKSGIYKHIT-----GETLGGHAIRII 206
Query: 171 GYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGI 230
G WG E+ PYW++ NSW WG GY + RG + C I
Sbjct: 207 G--------------------WGVEN--KAPYWLIANSWNEDWGENGYFRIVRGRDECSI 244
Query: 231 E 231
E
Sbjct: 245 E 245
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme,
papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A
1pbh_A 1mir_A
Length = 317
Score = 108 bits (272), Expect = 2e-28
Identities = 52/245 (21%), Positives = 77/245 (31%), Gaps = 70/245 (28%)
Query: 29 AALLEAQFFIRHGELPS--LSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSE 86
+ + I S +S + L+ C GC GG+ + + G + S
Sbjct: 98 VEAISDRICIHTNAHVSVEVSAEDLLTCCGSMC--GDGCNGGYPAEAWNFWTRKGLV-SG 154
Query: 87 RDYP----------------FEGKQGACR-----------------YVLGQDVVQVNDIF 113
Y G + C QD + +
Sbjct: 155 GLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSY 214
Query: 114 GLSG-EKAMRHFIHRKGPVVA--YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIV 170
+S EK + I++ GPV V + Y GV H H + I+
Sbjct: 215 SVSNSEKDIMAEIYKNGPVEGAFSVYSDFL--LYKSGVYQH--VTGEMM---GGHAIRIL 267
Query: 171 GYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERGTNACGI 230
G WG E+ G PYW+V NSW WG G+ + RG + CGI
Sbjct: 268 G--------------------WGVEN--GTPYWLVANSWNTDWGDNGFFKILRGQDHCGI 305
Query: 231 ERVVI 235
E V+
Sbjct: 306 ESEVV 310
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A
{Xylella fastidiosa}
Length = 291
Score = 96.5 bits (240), Expect = 4e-24
Identities = 24/223 (10%), Positives = 59/223 (26%), Gaps = 48/223 (21%)
Query: 29 AALLEAQFFIRHGELPSLSVQQLIDCHNPENAANYGCQGGHAMSTFYYLQIAGGLQSERD 88
AA ++ + + + I + + + G + + G+ E++
Sbjct: 84 AAAIQFERIHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKE 143
Query: 89 YPFEGKQGACRY-----------------VLGQDVVQVNDIFGLSG-EKAMRHFIHRKGP 130
+P+ R ++ + ++ ++ + P
Sbjct: 144 WPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSP 203
Query: 131 VVA--YVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSW 188
V V + + + H V+ VGY
Sbjct: 204 FVFGFSVYNSWV--GNNSLPV-RIPLPTKNDTLEGGHAVLCVGYDD-------------- 246
Query: 189 GPRWGYESRAGVPYWIVRNSWGPRWGYAGYAYVERG-TNACGI 230
+ ++ +RNSWG G GY ++ + +
Sbjct: 247 ----------EIRHFRIRNSWGNNVGEDGYFWMPYEYISNTQL 279
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural
genomics, JO center for structural genomics, JCSG; HET:
MSE; 2.23A {Parabacteroides distasonis}
Length = 383
Score = 46.8 bits (110), Expect = 3e-06
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 157 NPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
+ + + H + I G + + G Y++V+NSWG Y W ++
Sbjct: 310 DNYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNG-----IWYASKAF 357
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 33.2 bits (75), Expect = 0.066
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 161 SRLTHMVVIVGYG--QSRAGVP-YWIVRNSWGPRWGYESRAGVPYWIVRNSW 209
S +TH + + G W V NSWG G++ Y + + W
Sbjct: 367 SLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKG-----YLCMTDEW 413
Score = 32.0 bits (72), Expect = 0.16
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 202 YWIVRNSWGPRWGYAGYAYV 221
W V NSWG G+ GY +
Sbjct: 390 KWRVENSWGEDHGHKGYLCM 409
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1
protease, hydrolase; 1.73A {Saccharomyces cerevisiae}
PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A
1gcb_A
Length = 457
Score = 33.2 bits (75), Expect = 0.069
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 19/61 (31%)
Query: 161 SRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPYWIVRNSWGPRWGYAGYAY 220
S +T ++I G + V NSWG G G
Sbjct: 369 SLMTAAMLITGCHVDETSKL-------------------PLRYRVENSWGKDSGKDGLYV 409
Query: 221 V 221
+
Sbjct: 410 M 410
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.5 bits (74), Expect = 0.14
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 18/46 (39%)
Query: 163 LTHMVVIVGYGQSRAGVPYWIVRNSWGP---RWGYE-----SRAGV 200
L ++V+ G+ V WG RW E S G
Sbjct: 816 LERVIVVTGFA----EV------GPWGSARTRWEMEAFGEFSLEGC 851
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET:
E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Length = 174
Score = 28.7 bits (63), Expect = 1.1
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 143 DYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYWIVRNSWGPRWGYESRAGVPY 202
G+ +R + + H + +VG + G I+ N W + + A
Sbjct: 98 KNNKGIAILGSRVESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPWDNGFMTQD-AKNNV 156
Query: 203 WIVRNSWGPRWGYAGYAY 220
V N +W + Y Y
Sbjct: 157 IPVSNGDHYQWYSSIYGY 174
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural
genomics, sugar-binding transcriptional regulator
structure initiative; 2.40A {Enterococcus faecalis}
Length = 277
Score = 29.0 bits (66), Expect = 1.2
Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 33/106 (31%)
Query: 97 ACRYVLGQDV--VQVNDIFGLSGEKAMRHFI---HRKGPVVAYVNPALMINDYTGGVISH 151
R +++ V +++ G +A+ F+ +K V + +G +
Sbjct: 86 LDRTTEHRNIRQVLLDNRGG--ATQAIEQFVNVGSKK---VLLL---------SGPEKGY 131
Query: 152 DARACNPHPSRLTHMVVIVGYGQ--SRAGVPYWIVRNSWGPRWGYE 195
D++ RL + +R G+PY I++ + GY
Sbjct: 132 DSQE------RLA------VSTRELTRFGIPYEIIQGDFTEPSGYA 165
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 27.3 bits (61), Expect = 4.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 24 CTPLHAALLEAQFFIRHGELPSLSVQQL 51
PL A + + I HG L S L
Sbjct: 315 WLPL-AQCINGKVLIMHGGLFSEDGVTL 341
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.43A
{Pyrococcus furiosus dsm 3638}
Length = 369
Score = 27.4 bits (60), Expect = 4.8
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 131 VVAYVNPALMINDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAG----VPYWIVRN 186
V + +P I T V+ + C HP + ++V + + G +W+
Sbjct: 260 RVRFFSPGERIFTRTPSVLGRPVQLC--HPPKSVYVVNKI-LKAFKEGRKKEATFWLRLR 316
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 26.8 bits (60), Expect = 6.6
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 24 CTPLHAALLEAQFFIRHGELPSLSVQQL 51
PL A + + I HG L S L
Sbjct: 162 WLPL-AQCINGKVLIMHGGLFSEDGVTL 188
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 26.8 bits (60), Expect = 7.1
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 141 INDYTGGVISHDARACNPHPSRLTHMVVIVGYGQSRAGVPYW 182
+N YT H + + P+ T G
Sbjct: 376 LNYYTSRFSKHVDMSPDFTPTLNTDDAYASSETTGSDGNDIG 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.457
Gapped
Lambda K H
0.267 0.0856 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,011,975
Number of extensions: 247199
Number of successful extensions: 891
Number of sequences better than 10.0: 1
Number of HSP's gapped: 717
Number of HSP's successfully gapped: 66
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.1 bits)