BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7634
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99N92|RM27_MOUSE 39S ribosomal protein L27, mitochondrial OS=Mus musculus GN=Mrpl27
PE=2 SV=1
Length = 148
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
LL+ + P ++VR+A+KKTG S++N K+ G + G +K EG V G+IL +
Sbjct: 17 LLSPTAPTALAVRHASKKTGGSSKNLG-GKSRGKHY--GIKKMEGHYVHAGNILGTQ--R 71
Query: 72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
+ +HPG +VG G L+A+E+G V+ T + N K+T + + +G +YK +
Sbjct: 72 QFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTSLPKGAVLYKTFV 131
Query: 131 HVLPEEQHSRFRLVD 145
HV+P + F+LVD
Sbjct: 132 HVVPAKPEGTFKLVD 146
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 149 VRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPG 204
VR+A+KKTG S++N K+ G + G +K EG V G+IL ++ +HPG
Sbjct: 28 VRHASKKTGGSSKNLG-GKSRGKHY--GIKKMEGHYVHAGNILGTQ--RQFRWHPG 78
>sp|Q32PC3|RM27_BOVIN 39S ribosomal protein L27, mitochondrial OS=Bos taurus GN=MRPL27
PE=1 SV=1
Length = 148
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 1 MALSLV-----NSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQE 55
MAL+++ + LL+ Q ++VR A+KKTG S++N K+ G RF G RK E
Sbjct: 1 MALAVLAWRTRTAVIALLSPPQAAALAVRYASKKTGGSSKNLG-GKSPGKRF--GIRKME 57
Query: 56 GEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
G V G+IL + +HPG +VG G L+A+E+G V+ T E + ++ +
Sbjct: 58 GHYVHAGNILATQ--RHFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPSPSNSEAVD 115
Query: 116 NYSG-QEGLPIYKKHIHVLPEEQHSRFRLV 144
+ EG +YK +HV+P + F+LV
Sbjct: 116 LVTRLPEGAVLYKTFVHVVPAKPEGTFKLV 145
Score = 35.0 bits (79), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 149 VRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPG 204
VR A+KKTG S++N K+ G RF G RK EG V G+IL + +HPG
Sbjct: 28 VRYASKKTGGSSKNLG-GKSPGKRF--GIRKMEGHYVHAGNILATQ--RHFRWHPG 78
>sp|Q9P0M9|RM27_HUMAN 39S ribosomal protein L27, mitochondrial OS=Homo sapiens GN=MRPL27
PE=1 SV=1
Length = 148
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 1 MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVE 60
+AL + +LL+ + ++VR A+KK+G S++N K+SG R +G +K EG V
Sbjct: 6 LALRTRTAVTSLLSPTPATALAVRYASKKSGGSSKNLG-GKSSGRR--QGIKKMEGHYVH 62
Query: 61 KGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG- 119
G+I I+ + +HPG +VG G L+A+E+G V+ T E + ++T + +
Sbjct: 63 AGNI--IATQRHFRWHPGAHVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLITRL 120
Query: 120 QEGLPIYKKHIHVLPEEQHSRFRLV 144
+G +YK +HV+P + F+LV
Sbjct: 121 PKGAVLYKTFVHVVPAKPEGTFKLV 145
>sp|Q12F98|RL27_POLSJ 50S ribosomal protein L27 OS=Polaromonas sp. (strain JS666 / ATCC
BAA-500) GN=rpmA PE=3 SV=1
Length = 85
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGF 83
A KK G STRN + PK G +K GEV+ GSI I + +HPG+NVG
Sbjct: 2 AQKKGGGSTRNGRDSQ------PKMLGVKKFGGEVINAGSI--IVRQRGTKFHPGVNVGI 53
Query: 84 GARGTLFAMEKGKVKITVEKCNLNWKHT 111
G TLFA+ G V +V K LN KHT
Sbjct: 54 GKDHTLFALVDGAVSFSV-KGALN-KHT 79
>sp|C4K900|RL27_HAMD5 50S ribosomal protein L27 OS=Hamiltonella defensa subsp.
Acyrthosiphon pisum (strain 5AT) GN=rpmA PE=3 SV=1
Length = 85
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + G R G ++ GE V G+I I + +HPG+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSEGKRL--GVKRFGGEKVLAGTI--IVRQRGTKFHPGVNVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALSHGKVKFEVK 72
>sp|Q049M5|RL27_LACDB 50S ribosomal protein L27 OS=Lactobacillus delbrueckii subsp.
bulgaricus (strain ATCC BAA-365) GN=rpmA PE=3 SV=1
Length = 99
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 27/112 (24%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A K G ST N R ++G R G ++ +G+ V GSI+Y ++ HPG NVG G
Sbjct: 13 AHHKGGGSTTNG--RNSAGRRL--GAKRADGQEVHAGSIIYRQRGTKI--HPGKNVGRGG 66
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQ 137
TLFA+ G VK E L YKK + VLP E
Sbjct: 67 DDTLFALTNGVVKF---------------------ERLGKYKKQVSVLPVED 97
>sp|Q21M08|RL27_SACD2 50S ribosomal protein L27 OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=rpmA PE=3 SV=1
Length = 85
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI+ R+ HPG NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGETVTAGSIIVRQRGTRV--HPGENVGLGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA +G VK V+ N N K+ ++A
Sbjct: 56 DHTLFAKVEGAVKFEVKGPN-NRKYVSIVA 84
>sp|Q2L060|RL27_BORA1 50S ribosomal protein L27 OS=Bordetella avium (strain 197N) GN=rpmA
PE=3 SV=1
Length = 86
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G + G+ + GSI+ R +HPG+NVG G
Sbjct: 2 AQKKGGGSTRNG--RDSESKRL--GVKVYGGQEILAGSIIVRQRGTR--FHPGVNVGVGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA+ GKVK K LN WV A
Sbjct: 56 DHTLFALADGKVKFGT-KGALNKATVWVEA 84
>sp|A1VK91|RL27_POLNA 50S ribosomal protein L27 OS=Polaromonas naphthalenivorans (strain
CJ2) GN=rpmA PE=3 SV=1
Length = 85
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGF 83
A KK G STRN + PK G +K GEV+ GSI I + +HPG+NVG
Sbjct: 2 AQKKGGGSTRNGRDSQ------PKMLGVKKFGGEVINAGSI--IVRQRGTQFHPGVNVGI 53
Query: 84 GARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
G TL+A+ G+V + K ++N + V A
Sbjct: 54 GKDHTLYALVDGQVSFAI-KGSMNKRTVNVTA 84
>sp|C4K1G6|RL27_RICPU 50S ribosomal protein L27 OS=Rickettsia peacockii (strain Rustic)
GN=rpmA PE=3 SV=1
Length = 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGMNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|Q1RGM8|RL27_RICBR 50S ribosomal protein L27 OS=Rickettsia bellii (strain RML369-C)
GN=rpmA PE=3 SV=1
Length = 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGVNVGIGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ G+V+
Sbjct: 56 DHTIFALTSGRVE 68
>sp|A8GYB3|RL27_RICB8 50S ribosomal protein L27 OS=Rickettsia bellii (strain OSU
85-389) GN=rpmA PE=3 SV=1
Length = 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGVNVGIGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ G+V+
Sbjct: 56 DHTIFALTSGRVE 68
>sp|A8GTK7|RL27_RICRS 50S ribosomal protein L27 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpmA PE=3 SV=1
Length = 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGMNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|B0BV44|RL27_RICRO 50S ribosomal protein L27 OS=Rickettsia rickettsii (strain Iowa)
GN=rpmA PE=3 SV=1
Length = 86
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGMNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|B8FM67|RL27_DESAA 50S ribosomal protein L27 OS=Desulfatibacillum alkenivorans
(strain AK-01) GN=rpmA PE=3 SV=1
Length = 84
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R +G ++ GE+V G+IL R+ HPG NVG G
Sbjct: 2 AHKKAGGSSRNG--RDSNGQR--RGVKRYGGEIVRAGNILVRQVGTRI--HPGENVGMGR 55
Query: 86 RGTLFAMEKGKV 97
TLFA GKV
Sbjct: 56 DYTLFATIDGKV 67
>sp|Q7VZX5|RL27_BORPE 50S ribosomal protein L27 OS=Bordetella pertussis (strain Tohama I
/ ATCC BAA-589 / NCTC 13251) GN=rpmA PE=3 SV=1
Length = 86
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G + G+ + GSI+ R +HPG+NVG G
Sbjct: 2 AQKKGGGSTRNG--RDSESKRL--GVKVYGGQSILAGSIIVRQRGTR--FHPGVNVGVGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA+ GKV +V K LN V+A
Sbjct: 56 DHTLFALANGKVHFSV-KGALNKPTVSVVA 84
>sp|Q7W1P1|RL27_BORPA 50S ribosomal protein L27 OS=Bordetella parapertussis (strain 12822
/ ATCC BAA-587 / NCTC 13253) GN=rpmA PE=3 SV=1
Length = 86
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G + G+ + GSI+ R +HPG+NVG G
Sbjct: 2 AQKKGGGSTRNG--RDSESKRL--GVKVYGGQSILAGSIIVRQRGTR--FHPGVNVGVGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA+ GKV +V K LN V+A
Sbjct: 56 DHTLFALANGKVHFSV-KGALNKPTVSVVA 84
>sp|Q7WQL7|RL27_BORBR 50S ribosomal protein L27 OS=Bordetella bronchiseptica (strain ATCC
BAA-588 / NCTC 13252 / RB50) GN=rpmA PE=3 SV=1
Length = 86
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G + G+ + GSI+ R +HPG+NVG G
Sbjct: 2 AQKKGGGSTRNG--RDSESKRL--GVKVYGGQSILAGSIIVRQRGTR--FHPGVNVGVGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA+ GKV +V K LN V+A
Sbjct: 56 DHTLFALANGKVHFSV-KGALNKPTVSVVA 84
>sp|B8F874|RL27_HAEPS 50S ribosomal protein L27 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rpmA PE=3 SV=1
Length = 85
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK G STRN R + R G ++ GE V GSI+ QR +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIV---RQRGTKFHAGSNVGMG 54
Query: 85 ARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ +IA
Sbjct: 55 KDHTLFATADGKVKFEV-KGEKNRKYVSIIA 84
>sp|Q6MT50|RL27_MYCMS 50S ribosomal protein L27 OS=Mycoplasma mycoides subsp. mycoides SC
(strain PG1) GN=rpmA PE=3 SV=1
Length = 93
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 50 GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWK 109
G +K +G+ GSI+Y ++ HPGLNVG G TLFA+ G VK EK N
Sbjct: 31 GAKKSDGQFTNAGSIIYRQRGTKI--HPGLNVGRGGDDTLFALIAGTVK--YEKFGKNRT 86
Query: 110 HTWVIAN 116
VI N
Sbjct: 87 RVSVIPN 93
>sp|Q9CNS7|RL27_PASMU 50S ribosomal protein L27 OS=Pasteurella multocida (strain Pm70)
GN=rpmA PE=3 SV=1
Length = 85
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK G STRN R + R G ++ GE V GSI+ QR +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIV---RQRGTKFHAGSNVGMG 54
Query: 85 ARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ +IA
Sbjct: 55 RDHTLFATADGKVKFEV-KGEKNRKYVSIIA 84
>sp|B6JD23|RL27_OLICO 50S ribosomal protein L27 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rpmA PE=3 SV=1
Length = 89
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G + G++V G+I I+ + +HPGLNVG G
Sbjct: 2 AHKKAGGSSRNG--RDSAGKRL--GIKAFGGQIVIPGNI--IARQRGTTWHPGLNVGMGT 55
Query: 86 RGTLFAMEKGKVK 98
TLFA +G+V+
Sbjct: 56 DHTLFAKAEGRVE 68
>sp|Q89X93|RL27_BRAJA 50S ribosomal protein L27 OS=Bradyrhizobium japonicum (strain
USDA 110) GN=rpmA PE=3 SV=1
Length = 89
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R + G R G + GEVV G+I I+ + +HPGLNVG G
Sbjct: 2 AHKKAGGSSRNG--RDSKGKRL--GIKAFGGEVVIPGNI--IARQRGTTWHPGLNVGMGT 55
Query: 86 RGTLFAMEKGKV 97
TLFA +G+V
Sbjct: 56 DHTLFAKIEGRV 67
>sp|B8EQH6|RL27_METSB 50S ribosomal protein L27 OS=Methylocella silvestris (strain BL2
/ DSM 15510 / NCIMB 13906) GN=rpmA PE=3 SV=1
Length = 91
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K GE V G+I I + +HPG NVG G
Sbjct: 2 AHKKAGGSSRNG--RDSAGRRL--GVKKFGGERVVSGNI--IVRQRGTKWHPGANVGIGV 55
Query: 86 RGTLFAMEKGKVK 98
TLFA+ G VK
Sbjct: 56 DHTLFALADGAVK 68
>sp|B3CV08|RL27_ORITI 50S ribosomal protein L27 OS=Orientia tsutsugamushi (strain Ikeda)
GN=rpmA PE=3 SV=1
Length = 89
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK G S++N R ++G R G +K +G++V G+I+ QR ++PG NVG G
Sbjct: 2 ATKKAGGSSKNG--RDSAGRRL--GLKKSDGQLVNAGNIIV---KQRGTKFYPGKNVGLG 54
Query: 85 ARGTLFAMEKGKVKITVEKCN 105
T+F++ GKVK +K N
Sbjct: 55 KDHTIFSLVSGKVKFFRKKKN 75
>sp|Q13DL3|RL27_RHOPS 50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rpmA PE=3 SV=1
Length = 90
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G + GE V G+I I+ + +HPGLNVG G
Sbjct: 2 AHKKAGGSSRNG--RDSAGKRL--GIKAYGGEYVIPGNI--IARQRGTTWHPGLNVGMGT 55
Query: 86 RGTLFAMEKGKVK 98
TLFA +G+V+
Sbjct: 56 DHTLFAKVEGRVE 68
>sp|Q2SS74|RL27_MYCCT 50S ribosomal protein L27 OS=Mycoplasma capricolum subsp.
capricolum (strain California kid / ATCC 27343 / NCTC
10154) GN=rpmA PE=3 SV=1
Length = 93
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 50 GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWK 109
G +K +G+ GSI+Y ++ HPGLNVG G TLFA+ G VK EK N
Sbjct: 31 GAKKSDGQFTNAGSIIYRQRGTKI--HPGLNVGRGGDDTLFALISGIVK--YEKFGKNRT 86
Query: 110 HTWVIAN 116
VI N
Sbjct: 87 RVSVIPN 93
>sp|Q7VP91|RL27_HAEDU 50S ribosomal protein L27 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rpmA PE=3 SV=1
Length = 85
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK G STRN R + R G ++ GE V GSI+ QR +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIV---RQRGTKFHAGSNVGMG 54
Query: 85 ARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ ++A
Sbjct: 55 KDHTLFATADGKVKFEV-KGEKNRKYVSIVA 84
>sp|Q68VZ8|RL27_RICTY 50S ribosomal protein L27 OS=Rickettsia typhi (strain ATCC VR-144
/ Wilmington) GN=rpmA PE=3 SV=1
Length = 86
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GIKKSDGQYVIPGNIIVRQRGTKV--HPGINVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+F++ +G+V+
Sbjct: 56 DHTIFSLIEGRVE 68
>sp|Q9ZCI8|RL27_RICPR 50S ribosomal protein L27 OS=Rickettsia prowazekii (strain Madrid
E) GN=rpmA PE=3 SV=1
Length = 86
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG+NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKSDGQYVIPGNIIVRQRGTKI--HPGINVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+F++ +G+V+
Sbjct: 56 DHTIFSLIEGRVE 68
>sp|A5CF98|RL27_ORITB 50S ribosomal protein L27 OS=Orientia tsutsugamushi (strain
Boryong) GN=rpmA PE=3 SV=1
Length = 89
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK G S++N R ++G R G +K +G++V G+I+ QR ++PG NVG G
Sbjct: 2 ATKKAGGSSKNG--RDSAGRRL--GLKKTDGQLVNAGNIIV---KQRGTKFYPGKNVGLG 54
Query: 85 ARGTLFAMEKGKVKITVEKCN 105
T+F++ GKVK +K N
Sbjct: 55 KDHTIFSLVSGKVKFFRKKKN 75
>sp|Q92GG0|RL27_RICCN 50S ribosomal protein L27 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=rpmA PE=3 SV=1
Length = 86
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGTNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|Q4UK85|RL27_RICFE 50S ribosomal protein L27 OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=rpmA PE=3 SV=1
Length = 86
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGTNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|A0LPF8|RL27_SYNFM 50S ribosomal protein L27 OS=Syntrophobacter fumaroxidans (strain
DSM 10017 / MPOB) GN=rpmA PE=3 SV=1
Length = 88
Score = 42.0 bits (97), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 43/74 (58%), Gaps = 10/74 (13%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLD--YHPGLNVGF 83
A KK G S+RN R ++G R +G ++ GE V G+IL V++L +HPG NVG
Sbjct: 2 AHKKAGGSSRNG--RDSAGQR--RGVKRYGGEFVRAGNIL----VRQLGTKFHPGKNVGL 53
Query: 84 GARGTLFAMEKGKV 97
G TLFAM G V
Sbjct: 54 GRDYTLFAMIDGIV 67
>sp|A8F2N7|RL27_RICM5 50S ribosomal protein L27 OS=Rickettsia massiliae (strain Mtu5)
GN=rpmA PE=3 SV=1
Length = 87
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I+ ++ HPG NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKADGQYVIPGNIIVRQRGTKI--HPGTNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
>sp|B1JMJ6|RL27_YERPY 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype
O:3 (strain YPIII) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|Q66F75|RL27_YERPS 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|A4TRJ8|RL27_YERPP 50S ribosomal protein L27 OS=Yersinia pestis (strain Pestoides F)
GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|Q1CEJ8|RL27_YERPN 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|A9R588|RL27_YERPG 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain
Angola) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|Q8ZBA7|RL27_YERPE 50S ribosomal protein L27 OS=Yersinia pestis GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|B2K2P0|RL27_YERPB 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype
IB (strain PB1/+) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|Q1CBZ2|RL27_YERPA 50S ribosomal protein L27 OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|A7FMT7|RL27_YERP3 50S ribosomal protein L27 OS=Yersinia pseudotuberculosis serotype
O:1b (strain IP 31758) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G+NVG G
Sbjct: 2 AHKKAGGSTRNG--RDSESKRL--GVKRFGGEAVLAGSI--IVRQRGTKFHAGINVGCGK 55
Query: 86 RGTLFAMEKGKVKITVE 102
TLFA+ GKVK V+
Sbjct: 56 DHTLFALADGKVKFEVK 72
>sp|Q2J3K2|RL27_RHOP2 50S ribosomal protein L27 OS=Rhodopseudomonas palustris (strain
HaA2) GN=rpmA PE=3 SV=1
Length = 89
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G + GE V G+I I+ + +HPGLNVG G
Sbjct: 2 AHKKAGGSSRNG--RDSAGKRL--GIKAYGGEHVIPGNI--IARQRGTTWHPGLNVGMGT 55
Query: 86 RGTLFAMEKGKVK 98
TLFA +G+V+
Sbjct: 56 DHTLFAKVEGRVE 68
>sp|B0BU26|RL27_ACTPJ 50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSI--IVRQRGTKFHAGNNVGMGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ ++A
Sbjct: 56 DHTLFATADGKVKFEV-KGEKNRKYVSIVA 84
>sp|B3GZE6|RL27_ACTP7 50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSI--IVRQRGTKFHAGNNVGMGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ ++A
Sbjct: 56 DHTLFATADGKVKFEV-KGEKNRKYVSIVA 84
>sp|A3N3T8|RL27_ACTP2 50S ribosomal protein L27 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G STRN R + R G ++ GE V GSI I + +H G NVG G
Sbjct: 2 ATKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSI--IVRQRGTKFHAGNNVGMGK 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
TLFA GKVK V K N K+ ++A
Sbjct: 56 DHTLFATADGKVKFEV-KGEKNRKYVSIVA 84
>sp|Q0AHG6|RL27_NITEC 50S ribosomal protein L27 OS=Nitrosomonas eutropha (strain C91)
GN=rpmA PE=3 SV=1
Length = 85
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R + R G ++ GEV+ G I I + +HPG NVG G
Sbjct: 2 AHKKAGGSSRNG--RDSHSKRL--GVKRYGGEVIRAGGI--IVRQRGTQFHPGDNVGIGR 55
Query: 86 RGTLFAMEKGKVKITVEKCNLNWKHTWVI 114
TLFA GK+ T+ + LN + VI
Sbjct: 56 DHTLFAKVDGKIVFTI-RGRLNRRTVAVI 83
>sp|A8GPP8|RL27_RICAH 50S ribosomal protein L27 OS=Rickettsia akari (strain Hartford)
GN=rpmA PE=3 SV=1
Length = 86
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
A KK G S+RN R ++G R G +K +G+ V G+I I + HPG NVG G
Sbjct: 2 ATKKAGGSSRNG--RDSAGRRL--GVKKSDGQYVIPGNI--IVRQRGTTIHPGTNVGLGK 55
Query: 86 RGTLFAMEKGKVK 98
T+FA+ +G+V+
Sbjct: 56 DHTIFALIEGRVE 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,194,838
Number of Sequences: 539616
Number of extensions: 3350780
Number of successful extensions: 8708
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 8319
Number of HSP's gapped (non-prelim): 788
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)