Query psy7634
Match_columns 206
No_of_seqs 281 out of 1360
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 23:22:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_T 50S ribosomal protein L 100.0 2.5E-42 8.7E-47 263.0 8.6 87 25-138 1-87 (91)
2 3v2d_0 50S ribosomal protein L 100.0 3E-42 1E-46 259.7 8.5 84 25-135 1-84 (85)
3 3bbo_X Ribosomal protein L27; 100.0 5.3E-42 1.8E-46 289.8 -4.0 94 19-139 52-145 (198)
4 2ftc_O L27MT, MRP-L27, mitocho 100.0 3.3E-38 1.1E-42 230.0 6.7 69 26-99 1-69 (69)
5 3r8s_W 50S ribosomal protein L 100.0 4.5E-37 1.5E-41 227.6 8.6 76 34-135 1-76 (76)
6 3v2d_0 50S ribosomal protein L 99.9 2E-24 7E-29 162.7 3.3 50 151-206 1-50 (85)
7 2zjr_T 50S ribosomal protein L 99.9 4.9E-24 1.7E-28 162.4 3.3 50 151-206 1-50 (91)
8 2ftc_O L27MT, MRP-L27, mitocho 99.9 2.7E-23 9.1E-28 151.5 3.9 49 152-206 1-50 (69)
9 3bbo_X Ribosomal protein L27; 99.9 1.4E-23 4.7E-28 177.6 -0.2 55 146-206 53-107 (198)
10 3r8s_W 50S ribosomal protein L 99.7 6.5E-19 2.2E-23 130.5 3.3 41 160-206 1-41 (76)
11 2xhc_A Transcription antitermi 95.7 0.0048 1.6E-07 55.9 2.7 32 53-102 125-156 (352)
12 2xha_A NUSG, transcription ant 94.7 0.015 5E-07 49.3 2.6 31 53-101 85-115 (193)
13 3m7n_A Putative uncharacterize 85.0 1.3 4.5E-05 35.8 5.2 39 57-100 2-40 (179)
14 2lmc_B DNA-directed RNA polyme 77.7 1.8 6E-05 32.0 3.2 18 85-102 22-39 (84)
15 2d5d_A Methylmalonyl-COA decar 77.4 1.2 4.1E-05 29.6 2.0 37 51-99 19-55 (74)
16 1dcz_A Transcarboxylase 1.3S s 77.2 1.2 4.2E-05 30.0 2.1 38 51-100 22-59 (77)
17 2je6_I RRP4, exosome complex R 75.0 3.9 0.00013 35.0 5.1 42 53-100 13-56 (251)
18 1qjo_A Dihydrolipoamide acetyl 74.7 2.5 8.4E-05 28.8 3.1 37 51-99 20-56 (80)
19 2nn6_I 3'-5' exoribonuclease C 74.1 0.52 1.8E-05 39.3 -0.6 43 53-100 16-58 (209)
20 1z6h_A Biotin/lipoyl attachmen 72.0 1.6 5.5E-05 28.9 1.6 36 51-98 13-48 (72)
21 3lu0_D DNA-directed RNA polyme 71.2 1 3.5E-05 47.5 0.7 52 51-102 1107-1168(1407)
22 1iyu_A E2P, dihydrolipoamide a 71.1 1.6 5.6E-05 29.8 1.5 38 50-99 17-54 (79)
23 1ghj_A E2, E2, the dihydrolipo 69.9 2.7 9.1E-05 28.7 2.4 37 51-99 21-57 (79)
24 2ejm_A Methylcrotonoyl-COA car 69.3 2.8 9.5E-05 30.3 2.5 37 51-99 28-64 (99)
25 1bdo_A Acetyl-COA carboxylase; 65.4 2.8 9.6E-05 28.6 1.7 36 52-99 26-61 (80)
26 2ba0_A Archeal exosome RNA bin 63.6 4.7 0.00016 33.9 3.1 38 57-100 3-40 (229)
27 2z0s_A Probable exosome comple 62.4 1.9 6.5E-05 36.3 0.5 41 56-102 9-49 (235)
28 2l5t_A Lipoamide acyltransfera 62.0 1.6 5.6E-05 29.6 0.0 37 51-99 21-57 (77)
29 2dn8_A Acetyl-COA carboxylase 58.4 4.9 0.00017 28.9 2.1 36 51-98 31-66 (100)
30 3crk_C Dihydrolipoyllysine-res 54.1 7 0.00024 27.3 2.2 37 50-98 24-60 (87)
31 2kcc_A Acetyl-COA carboxylase 53.8 8.5 0.00029 26.8 2.6 37 51-99 19-55 (84)
32 3lu0_D DNA-directed RNA polyme 53.1 9.8 0.00033 40.4 3.9 44 44-101 994-1039(1407)
33 2k7v_A Dihydrolipoyllysine-res 52.4 1.5 5E-05 30.7 -1.6 36 51-98 16-51 (85)
34 2auk_A DNA-directed RNA polyme 52.1 7.7 0.00026 31.8 2.5 43 45-101 56-100 (190)
35 2nn6_H Exosome complex exonucl 48.9 7.9 0.00027 34.3 2.2 41 55-100 38-78 (308)
36 2jku_A Propionyl-COA carboxyla 47.8 4 0.00014 29.2 0.1 36 51-98 39-74 (94)
37 1gjx_A Pyruvate dehydrogenase; 47.6 2.7 9.3E-05 28.7 -0.8 36 51-98 21-56 (81)
38 2dnc_A Pyruvate dehydrogenase 45.8 11 0.00037 27.3 2.2 38 49-98 25-62 (98)
39 2dne_A Dihydrolipoyllysine-res 39.3 16 0.00053 27.1 2.2 37 50-98 26-62 (108)
40 1k8m_A E2 component of branche 37.8 12 0.0004 26.8 1.2 38 49-98 22-59 (93)
41 1f3z_A EIIA-GLC, glucose-speci 36.5 43 0.0015 27.0 4.6 18 176-193 97-114 (161)
42 1ax3_A Iiaglc, glucose permeas 35.9 38 0.0013 27.3 4.1 18 176-193 97-114 (162)
43 1pmr_A Dihydrolipoyl succinylt 35.3 4.1 0.00014 28.0 -1.5 38 49-98 20-57 (80)
44 1y8o_B Dihydrolipoyllysine-res 32.3 27 0.00091 27.0 2.6 38 49-98 45-82 (128)
45 3our_B EIIA, phosphotransferas 31.6 54 0.0018 27.3 4.4 18 176-193 119-136 (183)
46 3na6_A Succinylglutamate desuc 30.1 49 0.0017 28.8 4.2 41 53-102 272-313 (331)
47 3cdx_A Succinylglutamatedesucc 26.5 65 0.0022 28.1 4.4 42 53-102 282-323 (354)
48 3n6r_A Propionyl-COA carboxyla 23.3 41 0.0014 32.2 2.6 40 49-100 624-663 (681)
49 2auk_A DNA-directed RNA polyme 21.5 33 0.0011 28.0 1.3 25 44-68 159-185 (190)
50 2k32_A A; NMR {Campylobacter j 21.1 36 0.0012 24.4 1.4 18 51-68 15-32 (116)
No 1
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=2.5e-42 Score=263.01 Aligned_cols=87 Identities=31% Similarity=0.422 Sum_probs=80.3
Q ss_pred eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634 25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC 104 (206)
Q Consensus 25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~ 104 (206)
|||||++|||+| ||||++|| ||+|++|||+|.||+||||| |||+||||+|||||+||||||++||+|+|++.
T Consensus 1 mAhKK~~GSt~N-GRdS~~kr---LGvK~~gGq~V~aG~IivRQ--RGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~-- 72 (91)
T 2zjr_T 1 MAHKKGVGSSKN-GRDSNPKY---LGVKKFGGEVVKAGNILVRQ--RGTKFKAGQGVGMGRDHTLFALSDGKVVFINK-- 72 (91)
T ss_dssp -CCSSCSSCSSC-CCCCCCCC---CCCSSCTTCEECSSCEEECC--SSSSSEECTTEECCTTSCEEESSCEEEEEEEE--
T ss_pred CCcccCCCCCCC-CCCCCCce---eeEEecCCeEEcCCeEEEec--CCCEEcCCCCEEEcCCCcEEeccceEEEEEEc--
Confidence 899999999999 99999999 99999999999999999999 99999999999999999999999999999975
Q ss_pred cCCccchhhhhhccCCCCCCCCeeEEEeeecCcc
Q psy7634 105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQH 138 (206)
Q Consensus 105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~~ 138 (206)
...|+||+|+|++.+
T Consensus 73 -------------------~~~r~~V~V~p~~~~ 87 (91)
T 2zjr_T 73 -------------------GKGARFISIEAAQTE 87 (91)
T ss_dssp -------------------TTTEEEEEECCCC--
T ss_pred -------------------CCCcEEEEEEeChhh
Confidence 126899999997654
No 2
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=3e-42 Score=259.70 Aligned_cols=84 Identities=36% Similarity=0.451 Sum_probs=72.5
Q ss_pred eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634 25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC 104 (206)
Q Consensus 25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~ 104 (206)
|||||++|||+| ||||++|| ||+|++|||+|.||+||||| |||+||||+|||||+||||||++||+|+|++.
T Consensus 1 MAhKK~gGStkN-GrdS~~kr---LGvK~~~Gq~V~aG~IivRQ--RGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~-- 72 (85)
T 3v2d_0 1 MAHKKGLGSTRN-GRDSQAKR---LGVKRYEGQVVRAGNILVRQ--RGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR-- 72 (85)
T ss_dssp --------CCSC-CCCCCCCC---CEESSCTTCEECTTCEEEEC--SSCSEEECTTEEECTTCCEEESSSEEEEEEEC--
T ss_pred CCcccCCCCCCC-CCCCCCcc---ceeEecCCeEEcCCeEEEec--CCccCcCCCCEeEcCCCeEEEecCEEEEEEEc--
Confidence 899999999999 99999999 99999999999999999999 99999999999999999999999999999975
Q ss_pred cCCccchhhhhhccCCCCCCCCeeEEEeeec
Q psy7634 105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPE 135 (206)
Q Consensus 105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~ 135 (206)
...|+||+|+|+
T Consensus 73 -------------------~~~r~~VsV~p~ 84 (85)
T 3v2d_0 73 -------------------GRLGRYVHVRPL 84 (85)
T ss_dssp -------------------GGGCEEEEEEEC
T ss_pred -------------------CCCCEEEEEEEC
Confidence 126899999995
No 3
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=5.3e-42 Score=289.81 Aligned_cols=94 Identities=29% Similarity=0.410 Sum_probs=80.5
Q ss_pred cceeeeeeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 19 VCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 19 ~~~~vr~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
+..+|||||||++|||+| ||||+||| ||+|++|||+|.||+||||| |||+||||+|||||+||||||++||+|+
T Consensus 52 ~~l~VRmAhKKggGSTkN-GRDS~~KR---LGVK~~gGq~V~aGnIIVRQ--RGTkfhPG~NVG~GkDhTLFAl~~G~Vk 125 (198)
T 3bbo_X 52 IPLTIESAHKKGAGSTKN-GRDSPGQR---LGVKIYGDQVAKPGAIIVRQ--RGTKFHAGKNVGIGKDHTIFSLIDGLVK 125 (198)
T ss_dssp -------CCCCSSCCCCC-CCCCCCCC---CSCSSSBCCSSCSCCSSSSC--CCCSSCCCCSSSSCCCCCSBCCSCCCCC
T ss_pred hhhheeeeeccCCCCCCC-CCCCCCce---eeEEecCCeEeccCcEEEec--cCceEcCCCCeeecCCCceEeccceEEE
Confidence 456899999999999999 99999999 99999999999999999999 9999999999999999999999999999
Q ss_pred EEEeeccCCccchhhhhhccCCCCCCCCeeEEEeeecCccc
Q psy7634 99 ITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHS 139 (206)
Q Consensus 99 f~~~~~~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~~~ 139 (206)
|++. + ..|+||+|+|++.++
T Consensus 126 F~~~-------------------~--~~Rk~VsV~p~~~~~ 145 (198)
T 3bbo_X 126 FEKF-------------------G--PDRKKISVYPREIVP 145 (198)
T ss_dssp SSSS-------------------C--CCCSCCCSSCCCCC-
T ss_pred EEEc-------------------C--CCcEEEEEEeCCccc
Confidence 9853 1 268999999976543
No 4
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=3.3e-38 Score=229.95 Aligned_cols=69 Identities=35% Similarity=0.626 Sum_probs=68.3
Q ss_pred eecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 26 A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
||||++|||+|.+|||++|| ||+|++|||+|.||+||||| |||+||||+|||||+||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~kr---lGvK~~~Gq~V~aG~IivrQ--Rgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRR---QGIKKMEGHYVHAGNIIATQ--RHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCce---eeEEecCCeEecCCeEEEec--CCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 89999999999999999999 99999999999999999999 99999999999999999999999999997
No 5
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=4.5e-37 Score=227.61 Aligned_cols=76 Identities=38% Similarity=0.528 Sum_probs=71.3
Q ss_pred cCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeeccCCccchhh
Q psy7634 34 TRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWV 113 (206)
Q Consensus 34 t~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~p~~~~~w~ 113 (206)
|+| ||||++|| ||+|++|||+|.||+||||| |||+||||+|||||+||||||++||+|+|+...
T Consensus 1 t~N-GRDS~~kr---LGvK~~~Gq~V~aG~IivRQ--RGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~---------- 64 (76)
T 3r8s_W 1 TRN-GRDSEAKR---LGVKRFGGESVLAGSIIVRQ--RGTKFHAGANVGCGRDHTLFAKADGKVKFEVKG---------- 64 (76)
T ss_dssp CCC-CCCCCCCC---CEESSCTTCEECTTCEEEEC--SSCSSEECTTEEECTTSCEEESSSEEEEEEEET----------
T ss_pred CCC-CCCCCccc---ceEEecCCeEEecCcEEEec--cCccCcCCCCeeecCCCeEEEccCEEEEEEEeC----------
Confidence 689 99999999 99999999999999999999 999999999999999999999999999999751
Q ss_pred hhhccCCCCCCCCeeEEEeeec
Q psy7634 114 IANYSGQEGLPIYKKHIHVLPE 135 (206)
Q Consensus 114 ~~~~~grkg~~~~Kk~VnViP~ 135 (206)
...|+||+|+|+
T Consensus 65 ----------~~~r~~VsV~p~ 76 (76)
T 3r8s_W 65 ----------PKNRKFISIEAE 76 (76)
T ss_dssp ----------TTTEEEEEEECC
T ss_pred ----------CCCCEEEEEEeC
Confidence 236899999995
No 6
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=99.89 E-value=2e-24 Score=162.67 Aligned_cols=50 Identities=42% Similarity=0.561 Sum_probs=41.5
Q ss_pred hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634 151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 206 (206)
Q Consensus 151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n 206 (206)
|||||++|||+|+ |||+++|| |||++|||+|.||+||||||||+ ||||+|
T Consensus 1 MAhKK~gGStkNG--rdS~~krL--GvK~~~Gq~V~aG~IivRQRGtk--~hPG~N 50 (85)
T 3v2d_0 1 MAHKKGLGSTRNG--RDSQAKRL--GVKRYEGQVVRAGNILVRQRGTR--FKPGKN 50 (85)
T ss_dssp --------CCSCC--CCCCCCCC--EESSCTTCEECTTCEEEECSSCS--EEECTT
T ss_pred CCcccCCCCCCCC--CCCCCccc--eeEecCCeEEcCCeEEEecCCcc--CcCCCC
Confidence 8999999999999 89999999 99999999999999999999999 999998
No 7
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=99.88 E-value=4.9e-24 Score=162.41 Aligned_cols=50 Identities=32% Similarity=0.401 Sum_probs=48.4
Q ss_pred hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634 151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 206 (206)
Q Consensus 151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n 206 (206)
|||||++|||+|+ |||+++|| |||++|||+|.||+||||||||+ ||||+|
T Consensus 1 mAhKK~~GSt~NG--RdS~~krL--GvK~~gGq~V~aG~IivRQRGtk--~hPG~N 50 (91)
T 2zjr_T 1 MAHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILVRQRGTK--FKAGQG 50 (91)
T ss_dssp -CCSSCSSCSSCC--CCCCCCCC--CCSSCTTCEECSSCEEECCSSSS--SEECTT
T ss_pred CCcccCCCCCCCC--CCCCCcee--eEEecCCeEEcCCeEEEecCCCE--EcCCCC
Confidence 7999999999999 99999999 99999999999999999999999 999998
No 8
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=99.87 E-value=2.7e-23 Score=151.48 Aligned_cols=49 Identities=43% Similarity=0.657 Sum_probs=48.0
Q ss_pred hhcccCccccC-CCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634 152 AAKKTGTSTRN-KPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 206 (206)
Q Consensus 152 a~kk~~gst~N-~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n 206 (206)
||||++|||+| + |||+++|| |||++|||+|.||+||||||||+ ||||+|
T Consensus 1 A~KK~~GSt~N~g--rdS~~krl--GvK~~~Gq~V~aG~IivrQRgtk--~hPG~n 50 (69)
T 2ftc_O 1 ASKKSGGSSKNLG--GKSSGRRQ--GIKKMEGHYVHAGNIIATQRHFR--WHPGAH 50 (69)
T ss_pred CcccccCcccCCC--CCCCCcee--eEEecCCeEecCCeEEEecCCCe--EcCCCC
Confidence 89999999999 6 99999999 99999999999999999999999 999998
No 9
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.86 E-value=1.4e-23 Score=177.60 Aligned_cols=55 Identities=29% Similarity=0.451 Sum_probs=48.5
Q ss_pred hhhhhhhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634 146 EPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 206 (206)
Q Consensus 146 e~~vR~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n 206 (206)
.++|||||||+||||+|| |||+++|| |||++|||+|.||+||||||||+ ||||.|
T Consensus 53 ~l~VRmAhKKggGSTkNG--RDS~~KRL--GVK~~gGq~V~aGnIIVRQRGTk--fhPG~N 107 (198)
T 3bbo_X 53 PLTIESAHKKGAGSTKNG--RDSPGQRL--GVKIYGDQVAKPGAIIVRQRGTK--FHAGKN 107 (198)
T ss_dssp ------CCCCSSCCCCCC--CCCCCCCC--SCSSSBCCSSCSCCSSSSCCCCS--SCCCCS
T ss_pred hhheeeeeccCCCCCCCC--CCCCCcee--eEEecCCeEeccCcEEEeccCce--EcCCCC
Confidence 348999999999999999 99999999 99999999999999999999999 999998
No 10
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=99.74 E-value=6.5e-19 Score=130.46 Aligned_cols=41 Identities=37% Similarity=0.559 Sum_probs=40.0
Q ss_pred ccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634 160 TRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 206 (206)
Q Consensus 160 t~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n 206 (206)
|+|+ |||+++|| |||++|||+|.||+||||||||+ ||||+|
T Consensus 1 t~NG--RDS~~krL--GvK~~~Gq~V~aG~IivRQRGtk--~hPG~N 41 (76)
T 3r8s_W 1 TRNG--RDSEAKRL--GVKRFGGESVLAGSIIVRQRGTK--FHAGAN 41 (76)
T ss_dssp CCCC--CCCCCCCC--EESSCTTCEECTTCEEEECSSCS--SEECTT
T ss_pred CCCC--CCCCcccc--eEEecCCeEEecCcEEEeccCcc--CcCCCC
Confidence 6899 89999999 99999999999999999999999 999998
No 11
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.66 E-value=0.0048 Score=55.93 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=27.8
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE 102 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~ 102 (206)
+.+|+.|.+|+||+ +|+.+.|-+||+|.|.++
T Consensus 125 v~~g~~v~~G~vla------------------k~~aiiaeidG~V~fg~~ 156 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS------------------KNEEYICELDGKIVEIER 156 (352)
T ss_dssp CCTTCEECTTCBSB------------------SSSSCBCCSCEEEEEEEE
T ss_pred cCCCCEEccCcEEe------------------cCceEEeccceEEEECCc
Confidence 44788888888887 999999999999999874
No 12
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=94.67 E-value=0.015 Score=49.26 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=26.8
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEE
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITV 101 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~ 101 (206)
+.+|+.|.+|+||+ +|+.+.|-+||+|.|.+
T Consensus 85 V~dG~~V~~GdvLA------------------Kd~AIiaEIdG~V~fgk 115 (193)
T 2xha_A 85 LRVGTKVKQGLPLS------------------KNEEYICELDGKIVEIE 115 (193)
T ss_dssp CCTTCEECTTSBSS------------------TTSCSBCCSSEEEEEEE
T ss_pred cCCCCEEcCCCEEe------------------cCCeEEEccceEEEECC
Confidence 45788888888877 99999999999999986
No 13
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=85.01 E-value=1.3 Score=35.81 Aligned_cols=39 Identities=31% Similarity=0.323 Sum_probs=33.4
Q ss_pred eEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 57 EVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 57 q~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
+.|.||+.|.-- ..|.||.++..- |..|+|..-|.|.+.
T Consensus 2 ~iV~PGd~l~~~----~~~~~G~Gty~~-~~~i~as~~G~v~~~ 40 (179)
T 3m7n_A 2 RFVMPGDRIGSA----EEYVKGEGVYEE-GGELFAAVAGKLIIK 40 (179)
T ss_dssp CEECTTCEEEET----TTSEECTTEEEE-TTEEEESSSEEEEEE
T ss_pred eEEcCCCCCCCC----CCEeccCCEEEe-CCEEEEEEEEEEEEe
Confidence 479999999865 358999999885 889999999999984
No 14
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=77.68 E-value=1.8 Score=31.96 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=13.8
Q ss_pred CCceEEEeeceEEEEEEe
Q psy7634 85 ARGTLFAMEKGKVKITVE 102 (206)
Q Consensus 85 kD~TLfAl~~G~V~f~~~ 102 (206)
|+..+.|-++|+|.|..+
T Consensus 22 K~~AiIaEi~G~V~i~~~ 39 (84)
T 2lmc_B 22 KEPAILAEISGIVSFGKE 39 (84)
T ss_dssp --CCBSBSSSEEEEEECC
T ss_pred CCCEEeecCccEEEEeEe
Confidence 456788999999999863
No 15
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=77.42 E-value=1.2 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=28.3
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+....|+.|++|++|++- --.+. ..+|.|+.+|+|.-
T Consensus 19 ~~v~~G~~V~~G~~l~~i--~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVL--EAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp ECCCTTCEECTTCEEEEE--EETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCCCEeCCCCEEEEE--ecccc----------eEEEeCCCCEEEEE
Confidence 445689999999999997 32222 46899999999853
No 16
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=77.16 E-value=1.2 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=29.1
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
+....|+.|.+|++|++- ...++ ..+|.|+.+|+|.-.
T Consensus 22 ~~v~~G~~V~~G~~L~~l--~~~~~----------~~~i~Ap~~G~v~~~ 59 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVL--EAMKM----------ETEINAPTDGKVEKV 59 (77)
T ss_dssp ECCCTTCEECTTSEEEEE--EETTE----------EEEEECSSSEEEEEE
T ss_pred EEcCCcCEEcCCCEEEEE--Eccce----------eEEEECCCCEEEEEE
Confidence 445689999999999996 33332 478999999998743
No 17
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=74.97 E-value=3.9 Score=35.00 Aligned_cols=42 Identities=12% Similarity=0.167 Sum_probs=35.4
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCC--CeeecCCceEEEeeceEEEEE
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGL--NVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~--NVg~GkD~TLfAl~~G~V~f~ 100 (206)
..+++.|.||+.|... .|.||. ++.. .|..|||.+-|.|.+.
T Consensus 13 ~~~~~iV~PGd~l~~~-----~~~~G~~~Gty~-~~g~i~as~~G~v~~~ 56 (251)
T 2je6_I 13 LQPRSIVVPGELLAEG-----EFQIPWSPYILK-INSKYYSTVVGLFDVK 56 (251)
T ss_dssp CCSSCEECTTCEEEEE-----CCCCCCCTTEEE-ETTEEEECSSEEEEEE
T ss_pred cCCCcEEcCCCCCccC-----CeeeCCCCCEEE-ECCEEEEEEEEEEEEe
Confidence 3468999999999965 488999 9987 4778999999999866
No 18
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=74.72 E-value=2.5 Score=28.80 Aligned_cols=37 Identities=22% Similarity=0.043 Sum_probs=29.2
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+....|+.|.+|++|++- --.+ ...+|.|+.+|+|.-
T Consensus 20 ~~v~~G~~V~~G~~l~~i--e~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 20 VMVKVGDKVAAEQSLITV--EGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp CCCCTTCEECBTSEEEEE--ESSS----------SCEEEEBSSCEEEEE
T ss_pred EEcCCCCEECCCCEEEEE--EcCC----------ceEEEeCCCCEEEEE
Confidence 456689999999999997 3222 368899999999863
No 19
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=74.14 E-value=0.52 Score=39.33 Aligned_cols=43 Identities=16% Similarity=0.089 Sum_probs=33.2
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
..+++.|.||+.|... ..|.||.++.. .|..|||.+-|.|.+.
T Consensus 16 ~~~~~iV~PGd~l~~~----~~~~~G~Gty~-~~g~I~Asv~G~v~~~ 58 (209)
T 2nn6_I 16 APPVRYCIPGERLCNL----EEGSPGSGTYT-RHGYIFSSLAGCLMKS 58 (209)
T ss_dssp ----CCCCTTCEEEET----TTCCCSSSCEE-ETTEEECCSCSCBCCC
T ss_pred cCCCcEEcCCCCCCCC----CCeeecCCEEE-ECCEEEEEEEEEEEEe
Confidence 4457889999999866 46899999986 4678999999998865
No 20
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=71.98 E-value=1.6 Score=28.92 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=27.6
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
+....|+.|.+|++|++= .-.+ ...+|.|+.+|+|.
T Consensus 13 ~~v~~G~~V~~G~~l~~i--~~~~----------~~~~i~ap~~G~v~ 48 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAIL--ESMK----------MEIPIVADRSGIVK 48 (72)
T ss_dssp ECCCTTCEECTTCEEEEE--EETT----------EEEEEECSSCEEEE
T ss_pred EEcCCcCEECCCCEEEEE--ECCc----------cEEEEECCCCcEEE
Confidence 445689999999999985 2111 35789999999985
No 21
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=71.21 E-value=1 Score=47.51 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=32.8
Q ss_pred eEeeCCeEEeeCcEEEEeecCCce---eecCC-------CeeecCCceEEEeeceEEEEEEe
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLD---YHPGL-------NVGFGARGTLFAMEKGKVKITVE 102 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk---~hPG~-------NVg~GkD~TLfAl~~G~V~f~~~ 102 (206)
+-+.||+.|.+|+||+|=-+-..+ +-=|. -..-=+|..+.|-++|+|.|..+
T Consensus 1107 ~~v~~g~~v~~g~vlakip~~~~k~~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~ 1168 (1407)
T 3lu0_D 1107 VQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKE 1168 (1407)
T ss_dssp CCCCSSCEECTTCEEECCCCCCCCSSCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCC
T ss_pred EEecCCCEeccCceEEecchhhccccchhcCcHHHHHHHhccCCCCceEEeccceEEEEeec
Confidence 456799999999999984101111 00000 00112568899999999999765
No 22
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=71.08 E-value=1.6 Score=29.81 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=29.4
Q ss_pred ceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 50 GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 50 GiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
-+.+..|+.|.+|++|+.- --.+. ..+|.|+.+|+|.-
T Consensus 17 ~~~v~~Gd~V~~G~~l~~l--e~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 17 ELLVKTGDLIEVEQGLVVL--ESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EECCCTTCBCCSSSEEEEE--ECSSC----------EEEEECSSSSEEEE
T ss_pred EEecCCCCEEcCCCEEEEE--Eccce----------EEEEECCCCEEEEE
Confidence 3556789999999999997 33332 47899999999873
No 23
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=69.89 E-value=2.7 Score=28.72 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.1
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+.+..|+.|.+|++|+.- --.+ ..+.|.|+.+|+|.-
T Consensus 21 ~~v~~Gd~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 21 WHKKPGEAVKRDELIVDI--ETDK----------VVMEVLAEADGVIAE 57 (79)
T ss_dssp CSSCTTSEECSSCEEEEE--ECSS----------CEEEEECSSCEEEEE
T ss_pred EEcCCCCEECCCCEEEEE--Eccc----------eeEEEEcCCCEEEEE
Confidence 556789999999999997 3332 247899999999873
No 24
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=69.30 E-value=2.8 Score=30.30 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.6
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+.+..|+.|.+|++|++- --.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~i--e~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVM--IAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEE--ESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEE--Eccce----------eEEEECCCCeEEEE
Confidence 456689999999999996 32222 36899999999864
No 25
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=65.41 E-value=2.8 Score=28.59 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=28.0
Q ss_pred EeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 52 RKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 52 K~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
....|+.|.+|++|++- --.+ -..+|.|+.+|+|.-
T Consensus 26 ~v~~G~~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 26 FIEVGQKVNVGDTLCIV--EAMK----------MMNQIEADKSGTVKA 61 (80)
T ss_dssp SCCTTCEECTTCEEEEE--EETT----------EEEEEECSSCEEEEE
T ss_pred ccCCcCEECCCCEEEEE--Eecc----------EEEEEECCCCEEEEE
Confidence 45689999999999996 3222 147899999999874
No 26
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=63.62 E-value=4.7 Score=33.88 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=32.0
Q ss_pred eEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 57 EVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 57 q~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
+.|.||+.|.-. .|.||.++.. .|..|||.+-|.|.+.
T Consensus 3 ~iV~PGd~l~~~-----~~~~G~Gty~-~~g~i~as~~G~v~~~ 40 (229)
T 2ba0_A 3 KIVLPGDLLSTN-----PRAAGYGTYV-EGGKVYAKIIGLFDQT 40 (229)
T ss_dssp CEECTTCEEESC-----TTSBCTTEEE-ETTEEEECSSEEEEEC
T ss_pred CEEcCCCCcccC-----CeEecCCEEE-eCCEEEEEEEEEEEEe
Confidence 679999999843 4889999987 6788999999998865
No 27
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=62.36 E-value=1.9 Score=36.29 Aligned_cols=41 Identities=20% Similarity=0.023 Sum_probs=0.0
Q ss_pred CeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634 56 GEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE 102 (206)
Q Consensus 56 Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~ 102 (206)
++.|.||+.|... .|.||.++.. .|..|+|.+-|.|.+...
T Consensus 9 ~~iV~PGd~l~~~-----~~~~G~Gty~-~~~~I~Asv~G~v~~~~~ 49 (235)
T 2z0s_A 9 GRIVVPGEPLPEE-----VEASPPYVID-YKGVKRATVVGLLREKGD 49 (235)
T ss_dssp -----------------------------------------------
T ss_pred CcEEeCCCCcccC-----ceEcCCCEEE-ECCEEEEEEeEEEEEeCC
Confidence 5789999999855 4899999876 567899999999887643
No 28
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=62.05 E-value=1.6 Score=29.57 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=28.5
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+....|+.|.+|++|+.- --.+. ..+|.|+.+|+|.-
T Consensus 21 ~~v~~G~~V~~G~~l~~i--e~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 21 WDVKEGDMVEKDQDLVEV--MTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp CSCCTTCEECSCCCCCEE--ESSSC----------EEECCCCCCEEEEE
T ss_pred EEeCCCCEECCCCEEEEE--Eccce----------EEEEECCCCEEEEE
Confidence 455689999999999987 33322 46899999999873
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.45 E-value=4.9 Score=28.94 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=28.5
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
+.+..|+.|.+|+.|+.- --++ -..+|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~l--e~~k----------~~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEM--EVMK----------MIMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEE--EETT----------EEEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEE--Eecc----------eEEEEEcCCCEEEE
Confidence 455689999999999986 3222 25789999999998
No 30
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=54.13 E-value=7 Score=27.33 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=29.1
Q ss_pred ceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 50 GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 50 GiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
=+.+..|+.|.+|+.|+.- --.+ -.+.|.|..+|+|.
T Consensus 24 ~~~v~~Gd~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~ 60 (87)
T 3crk_C 24 RWEKKVGEKLSEGDLLAEI--ETDX----------ATIGFEVQEEGYLA 60 (87)
T ss_dssp EECSCTTCEECTTCEEEEE--ECSS----------CEEEEECCSCEEEE
T ss_pred EEEcCCCCEEcCCCEEEEE--ECCc----------ccceeecCcCcEEE
Confidence 3566789999999999987 3333 24789999999987
No 31
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=53.84 E-value=8.5 Score=26.83 Aligned_cols=37 Identities=30% Similarity=0.354 Sum_probs=28.8
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI 99 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f 99 (206)
+.+..|+.|.+|+.|+.- --++ -..+|.|+.+|+|.-
T Consensus 19 ~~v~~Gd~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~~ 55 (84)
T 2kcc_A 19 YTVEDGGHVEAGSSYAEM--EVMK----------MIMTLNVQERGRVKY 55 (84)
T ss_dssp ESSCTTEEECTTCEEEEE--ECSS----------CEEEEECSSSEEEEE
T ss_pred EECCCCCEECCCCEEEEE--Eecc----------eeEEEECCCCEEEEE
Confidence 556689999999999986 3222 247899999999864
No 32
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=53.07 E-value=9.8 Score=40.38 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=31.6
Q ss_pred CCccCcc--eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEE
Q psy7634 44 GFRFPKG--FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITV 101 (206)
Q Consensus 44 kr~~~lG--iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~ 101 (206)
++..++| +.+.+||.|++|++|+-- -| -.+-|.|-++|+|+|..
T Consensus 994 ~~~ip~gs~l~v~~g~~V~~g~~ia~w-------Dp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 994 SYKVPYGAVLAKGDGEQVAGGETVANW-------DP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp CEEECTTCEESSCSSCEECTTCEEEEC-------CS-------SCCCEECSSCEEEEEES
T ss_pred EEEcCCCCEEEEcCCCEecCCCEEEEE-------ec-------CceeEEeccceEEEEee
Confidence 3444455 345688888888888754 34 25779999999999974
No 33
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=52.44 E-value=1.5 Score=30.73 Aligned_cols=36 Identities=22% Similarity=0.069 Sum_probs=28.8
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
|.+..|+.|.+|++|+.- --.+ ...+|.|+.+|+|.
T Consensus 16 ~~v~~Gd~V~~G~~L~~i--e~~k----------~~~~i~Ap~~G~V~ 51 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITV--EGDK----------ASMEVPAPFAGVVK 51 (85)
T ss_dssp CCCSSSCCCCCSSSCCCC--SCCC----------SEEEEECSSCBCCC
T ss_pred EEcCCCCEEcCCCEEEEE--Eccc----------cEEEEECCCCEEEE
Confidence 556789999999999986 3332 46889999999886
No 34
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=52.13 E-value=7.7 Score=31.84 Aligned_cols=43 Identities=26% Similarity=0.476 Sum_probs=29.4
Q ss_pred CccCcc--eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEE
Q psy7634 45 FRFPKG--FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITV 101 (206)
Q Consensus 45 r~~~lG--iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~ 101 (206)
+..++| +.+.+||.|++|++|+ + |-| -.+-|.|-.+|+|+|..
T Consensus 56 ~~ipyGa~L~V~dG~~V~~G~~la-e------wDp-------~t~pIisE~~G~V~f~d 100 (190)
T 2auk_A 56 YKVPYGAVLAKGDGEQVAGGETVA-N------WDP-------HTMPVITEVSGFVRFTD 100 (190)
T ss_dssp EECCTTCEESSCTTCEECTTCEEE-E------CCS-------SEEEEECSSCEEEEEES
T ss_pred EEcCCCCEEEecCCCEEcCCCEEE-E------EcC-------cCCcEEeccccEEEEEe
Confidence 334455 3455788888888887 3 222 12459999999999985
No 35
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=48.92 E-value=7.9 Score=34.30 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=32.6
Q ss_pred CCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 55 EGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 55 ~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
+++.|.||+.|... ..|.||.++..- |..|||.+-|.|...
T Consensus 38 ~~~iVlPGd~L~~~----~~~~~G~Gty~~-~g~I~Asv~G~v~~~ 78 (308)
T 2nn6_H 38 KKHLVVPGDTITTD----TGFMRGHGTYMG-EEKLIASVAGSVERV 78 (308)
T ss_dssp --CBCCTTCBCCCC----TTCCBCTTEEEC-SSSEEECSSEEEEEE
T ss_pred CCcEEeCCCCCCCC----CCEeecCCeEEE-CCEEEEEEEEEEEec
Confidence 46789999999865 368999999864 667999999998865
No 36
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=47.78 E-value=4 Score=29.24 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=16.0
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
+.+..|+.|.+|++|+.- --.+ -..+|.|+.+|+|.
T Consensus 39 ~~v~~Gd~V~~Gq~L~~i--e~~k----------~~~~i~AP~~G~V~ 74 (94)
T 2jku_A 39 VSVKPGDAVAEGQEICVI--EAMK----------MQNSMTAGKTGTVK 74 (94)
T ss_dssp ECCCTTCCCCTTCCCEEE--EC--------------------------
T ss_pred EECCCCCEEcCCCEEEEE--eccc----------ccEEEECCCCEEEE
Confidence 456689999999999986 3222 24679999999986
No 37
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=47.60 E-value=2.7 Score=28.73 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=27.5
Q ss_pred eEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 51 FRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
+.+..|+.|.+|++|+.- --.+ ...+|.|+.+|+|.
T Consensus 21 ~~v~~Gd~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 21 VEVNVGDTIAVDDTLITL--ETDK----------ATMDVPAEVAGVVK 56 (81)
T ss_dssp ECCCSSCBCCSSCCCEEE--ECSS----------CEEEECCCCSSBBC
T ss_pred EEcCCCCEECCCCEEEEE--EeCC----------cEEEEECCCCEEEE
Confidence 455689999999999986 3332 25789999999875
No 38
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.85 E-value=11 Score=27.33 Aligned_cols=38 Identities=32% Similarity=0.290 Sum_probs=29.7
Q ss_pred cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
.=|.+..|+.|.+|++|+.- --++ -.+.|-|..+|+|.
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~i--e~~K----------~~~~i~Ap~~G~v~ 62 (98)
T 2dnc_A 25 VKWLKKEGEAVSAGDALCEI--ETDK----------AVVTLDASDDGILA 62 (98)
T ss_dssp EEESSCTTCEECTTSEEEEE--ECSS----------CEEEEECSSCEEEE
T ss_pred EEEEcCCCCEeCCCCEEEEE--Eccc----------ceeEEeCCCCEEEE
Confidence 34667789999999999986 3332 35789999999986
No 39
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=39.34 E-value=16 Score=27.07 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=29.0
Q ss_pred ceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 50 GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 50 GiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
=|.+..|+.|.+|++|+.- --++ -.+.|.|..+|+|.
T Consensus 26 ~~~v~~Gd~V~~G~~L~~i--E~~K----------~~~~i~Ap~~G~V~ 62 (108)
T 2dne_A 26 RWEKKEGDKINEGDLIAEV--ETDK----------ATVGFESLEECYMA 62 (108)
T ss_dssp ECSSCTTCEECTTSEEEEE--ECSS----------CEEEEECSSSEEEE
T ss_pred EEEcCCCCEecCCCEEEEE--EcCc----------ceeEEeCCCCEEEE
Confidence 3556789999999999987 3332 24789999999986
No 40
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=37.82 E-value=12 Score=26.81 Aligned_cols=38 Identities=24% Similarity=0.208 Sum_probs=28.9
Q ss_pred cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
.=|.+..|+.|.+|+.|+.- --.+ -...|.|+.+|+|.
T Consensus 22 ~~~~v~~Gd~V~~G~~l~~i--e~~K----------~~~~i~Ap~~G~V~ 59 (93)
T 1k8m_A 22 KEWYVKEGDTVSQFDSICEV--QSDK----------ASVTITSRYDGVIK 59 (93)
T ss_dssp EEECCCTTCEECSSSCCEEE--ECSS----------CEEECCCSSCEEEE
T ss_pred EEEEcCCcCEECCCCEEEEE--EcCC----------cEEEEEcCCCEEEE
Confidence 34566789999999999986 3332 23778999999987
No 41
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=36.49 E-value=43 Score=26.95 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=14.8
Q ss_pred CeeeeCCeEEeeCcEEEE
Q psy7634 176 GFRKQEGEVVEKGSILYI 193 (206)
Q Consensus 176 G~k~~~g~~v~~G~Ii~r 193 (206)
=.....||.|++|..|++
T Consensus 97 ~~~V~~Gd~V~~G~~L~~ 114 (161)
T 1f3z_A 97 KRIAEEGQRVKVGDTVIE 114 (161)
T ss_dssp EECSCTTCEECTTCEEEE
T ss_pred EEEEeCcCEECCCCEEEE
Confidence 346678999999999876
No 42
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=35.86 E-value=38 Score=27.31 Aligned_cols=18 Identities=33% Similarity=0.274 Sum_probs=14.9
Q ss_pred CeeeeCCeEEeeCcEEEE
Q psy7634 176 GFRKQEGEVVEKGSILYI 193 (206)
Q Consensus 176 G~k~~~g~~v~~G~Ii~r 193 (206)
=+....||.|++|.+|++
T Consensus 97 ~~~V~~Gd~V~~G~~L~~ 114 (162)
T 1ax3_A 97 TSFVSEGDRVEPGQKLLE 114 (162)
T ss_dssp EESCCCCSEECSEEEEEE
T ss_pred EEEEeCCCEEcCCCEEEE
Confidence 456778999999998876
No 43
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=35.26 E-value=4.1 Score=27.96 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
.=+.+..|+.|.+|+.|+.- --.+ -.+.|.|+.+|+|.
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~i--e~~k----------~~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEI--ETDK----------VVLEVPASADGILD 57 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBC--CSSS----------CCCCCBCCSBCCCC
T ss_pred EEEECCCcCEECCCCEEEEE--Eccc----------eEEEEECCCCEEEE
Confidence 33566789999999999986 4333 24788999999875
No 44
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=32.34 E-value=27 Score=26.97 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634 49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK 98 (206)
Q Consensus 49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~ 98 (206)
.-|.+..|+.|.+|++|+.- --++ -.+.|.|..+|+|.
T Consensus 45 ~~~~V~~Gd~V~~Gd~L~~i--Ea~K----------~~~~I~Ap~~G~V~ 82 (128)
T 1y8o_B 45 QRWEKKVGEKLSEGDLLAEI--ETDK----------ATIGFEVQEEGYLA 82 (128)
T ss_dssp EEECSCTTCEECTTCEEEEE--ECSS----------CEEEEECCSCEEEE
T ss_pred EEEecCCCCEecCCCEEEEE--EcCc----------ceeEEeCCCCeEEE
Confidence 44667789999999999987 3333 25789999999986
No 45
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=31.57 E-value=54 Score=27.28 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.2
Q ss_pred CeeeeCCeEEeeCcEEEE
Q psy7634 176 GFRKQEGEVVEKGSILYI 193 (206)
Q Consensus 176 G~k~~~g~~v~~G~Ii~r 193 (206)
=+...+||.|++|..|++
T Consensus 119 ~~~V~~Gd~Vk~Gd~L~~ 136 (183)
T 3our_B 119 TRIAEEGQTVKAGDTVIE 136 (183)
T ss_dssp EECSCTTCEECTTCEEEE
T ss_pred eEEEeCcCEEcCCCEEEE
Confidence 456778999999999886
No 46
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=30.08 E-value=49 Score=28.76 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=29.9
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCCCeeecC-CceEEEeeceEEEEEEe
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA-RGTLFAMEKGKVKITVE 102 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~Gk-D~TLfAl~~G~V~f~~~ 102 (206)
+.-||.|++|++|.+. .-|- ..|. -.++.|..||.|-+...
T Consensus 272 v~~Gd~V~~G~~la~I------~dp~---~~g~~~~~v~Ap~dGiVi~~~~ 313 (331)
T 3na6_A 272 IDLGEPVQEGDLVARV------WSPD---RTGEAPVEYRARRSGVLISRHF 313 (331)
T ss_dssp SCTTCEECTTCEEEEE------ECSS---CSSCCCEEEECSSSEEEEEEEC
T ss_pred CCCCCEEcCCCEEEEE------EcCc---cCCCeeEEEEcCCCEEEEEEeC
Confidence 4489999999999998 1120 1222 47899999999988764
No 47
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=26.50 E-value=65 Score=28.07 Aligned_cols=42 Identities=19% Similarity=0.003 Sum_probs=29.7
Q ss_pred eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634 53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE 102 (206)
Q Consensus 53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~ 102 (206)
+..||.|.+|++|.+. .- -+-+|+ .-.+++|..||.|.+...
T Consensus 282 ~~~g~~V~~G~~La~i--~d-~~~~g~-----~~~~v~Ap~dG~v~~~~~ 323 (354)
T 3cdx_A 282 HYVGEEVRTGETAGWI--HF-VEDVDT-----APLELLYRRDGIVWFGAG 323 (354)
T ss_dssp CCTTCEECTTSEEEEE--EC-TTSSSC-----CCEEEECCSCEEEEEEEC
T ss_pred CCCCCEeCCCCEEEEE--EC-CCCCCC-----eeEEEEcCCCeEEEEEeC
Confidence 4579999999999997 10 001132 237899999999987764
No 48
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=23.33 E-value=41 Score=32.22 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=31.4
Q ss_pred cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634 49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT 100 (206)
Q Consensus 49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~ 100 (206)
.=+.+..|+.|.+|+.|+.- - -|-..++|-|+.+|+|.--
T Consensus 624 ~~~~v~~Gd~V~~g~~l~~i--E----------amKm~~~i~ap~~G~v~~i 663 (681)
T 3n6r_A 624 VKVDVEVGQEVQEGQALCTI--E----------AMKMENILRAEKKGVVAKI 663 (681)
T ss_dssp EEECCCTTCEECTTCEEEEE--E----------CSSCEEEEECSSSEEEEEE
T ss_pred EEEEeCCCCEEcCCCEEEEE--E----------ecCceeEEECCCCeEEEEE
Confidence 34677899999999999987 2 2345689999999999643
No 49
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=21.55 E-value=33 Score=28.04 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.2
Q ss_pred CCccCcc--eEeeCCeEEeeCcEEEEe
Q psy7634 44 GFRFPKG--FRKQEGEVVEKGSILYIS 68 (206)
Q Consensus 44 kr~~~lG--iK~~~Gq~V~~G~IivRQ 68 (206)
.+.++.| +.+.+|+.|.+|+||+|=
T Consensus 159 ~Y~LP~ga~i~v~dG~~V~~GdvLAri 185 (190)
T 2auk_A 159 QYFLPGKAIVQLEDGVQISSGDTLARI 185 (190)
T ss_dssp EEECCTTCEESSCTTCEECTTCEEEEE
T ss_pred EEECCCCCEEEEcCCCEEcCCCEEEEc
Confidence 4556666 567899999999999984
No 50
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=21.12 E-value=36 Score=24.39 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.4
Q ss_pred eEeeCCeEEeeCcEEEEe
Q psy7634 51 FRKQEGEVVEKGSILYIS 68 (206)
Q Consensus 51 iK~~~Gq~V~~G~IivRQ 68 (206)
+....|+.|++|++|++-
T Consensus 15 v~v~~G~~V~~Gq~L~~l 32 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFII 32 (116)
T ss_dssp ECSCTTSEECTTCEEEEE
T ss_pred EECCCcCEECCCCEEEEE
Confidence 445689999999999986
Done!