RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7634
(206 letters)
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 56.2 bits (135), Expect = 4e-10
Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 34/154 (22%)
Query: 12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
L P+ +++ +A KK ST+N R + G R G + +V + G+I+ Q
Sbjct: 45 LENLQAPIPLTIESAHKKGAGSTKNG--RDSPGQRL--GVKIYGDQVAKPGAIIV---RQ 97
Query: 72 R-LDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
R +H G NVG G T+F++ G VK + +K I
Sbjct: 98 RGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPD---------------------RKKI 136
Query: 131 HVLPEEQHSRFRLVDEPRVRNAAKKTGTSTRNKP 164
V P E + P A K+ + +
Sbjct: 137 SVYPREIVP-----ENPNSYRARKRENFRLQREK 165
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Length = 69
Score = 51.5 bits (124), Expect = 1e-09
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A+KK+G S++N K+SG R G +K EG V G+I+ QR +HPG +VG G
Sbjct: 1 ASKKSGGSSKNLG-GKSSGRRQ--GIKKMEGHYVHAGNIIA---TQRHFRWHPGAHVGVG 54
Query: 85 ARGTLFAMEKGKVK 98
L+A+E+G V+
Sbjct: 55 KNKCLYALEEGIVR 68
Score = 31.8 bits (73), Expect = 0.023
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLN 206
A+KK+G S++N K+SG R G +K EG V G+I+ QR +HPG +
Sbjct: 1 ASKKSGGSSKNLG-GKSSGRRQ--GIKKMEGHYVHAGNII---ATQRHFRWHPGAH 50
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0
2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0
2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Length = 85
Score = 47.7 bits (114), Expect = 6e-08
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 8/74 (10%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK STRN R + R G ++ EG+VV G+IL QR + PG NVG G
Sbjct: 2 AHKKGLGSTRNG--RDSQAKRL--GVKRYEGQVVRAGNILV---RQRGTRFKPGKNVGMG 54
Query: 85 ARGTLFAMEKGKVK 98
TLFA+ G V+
Sbjct: 55 RDFTLFALVDGVVE 68
Score = 28.4 bits (64), Expect = 0.47
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLN 206
A KK STRN R + R G ++ EG+VV G+IL QR + PG N
Sbjct: 2 AHKKGLGSTRNG--RDSQAKRL--GVKRYEGQVVRAGNIL---VRQRGTRFKPGKN 50
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U*
1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0
2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T*
1pnu_U 1pny_U 1vor_X 1vou_X ...
Length = 91
Score = 47.3 bits (113), Expect = 8e-08
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
A KK S++N R ++ G +K GEVV+ G+IL QR + G VG G
Sbjct: 2 AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILV---RQRGTKFKAGQGVGMG 54
Query: 85 ARGTLFAMEKGKVK 98
TLFA+ GKV
Sbjct: 55 RDHTLFALSDGKVV 68
Score = 28.1 bits (63), Expect = 0.69
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLN 206
A KK S++N R ++ G +K GEVV+ G+IL QR + G
Sbjct: 2 AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNIL---VRQRGTKFKAGQG 50
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W
2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W
2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ...
Length = 76
Score = 40.7 bits (96), Expect = 2e-05
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 50 GFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFGARGTLFAMEKGKVK 98
G ++ GE V GSI+ QR +H G NVG G TLFA GKVK
Sbjct: 13 GVKRFGGESVLAGSIIV---RQRGTKFHAGANVGCGRDHTLFAKADGKVK 59
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.011
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 8/54 (14%)
Query: 2 ALSLVNSFKNLLTTSQP-----VCMSVRNAAKKTGTSTRNKPI--RK-NSGFRF 47
+SLVN KNL+ + P + +++R A +G P RK RF
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.10
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 25/91 (27%)
Query: 66 YI-SYVQRLDYHPGL-NVGFGARGTLFAME-------KGKVKITVEKCNLNWKHTWVIAN 116
Y S+ + +H L N+ R TLF M + K++ + W + I N
Sbjct: 472 YFYSH---IGHH--LKNIEHPERMTLFRMVFLDFRFLEQKIRHD----STAWNASGSILN 522
Query: 117 YSGQEGLPIYKKHIHVLPEEQHSRF-RLVDE 146
Q L YK +I + ++ RLV+
Sbjct: 523 TLQQ--LKFYKPYI----CDNDPKYERLVNA 547
Score = 28.3 bits (62), Expect = 2.3
Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 25/88 (28%)
Query: 134 PEEQHSRF--------------RLVDEPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGF-- 177
EE +F + E R + + R++ N F K
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVS 132
Query: 178 RKQEGEVVEKGSILYISYVQRLDYHPGL 205
R Q + + + L +
Sbjct: 133 RLQPYLKLRQA-------LLELRPAKNV 153
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage
P2, lactococcal phage TP901-1, receptor BI protein;
3.35A {Lactococcus phage tp901-1}
Length = 165
Score = 28.7 bits (63), Expect = 0.99
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 1/97 (1%)
Query: 22 SVRNAAKKTGT-STRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN 80
++ + + + T + +G G + G V GS+ ++ GL
Sbjct: 17 TINDDLEAINSELTSGGNVVHKTGDETIAGKKTFTGNVEVNGSLTLPVQTLTVEAGNGLQ 76
Query: 81 VGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANY 117
+ + + + ++ + N TWV +
Sbjct: 77 LQLTKKNNDLVIVRFFGSVSNIQKGWNMSGTWVDRPF 113
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 26.4 bits (59), Expect = 7.6
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 65 LYISYVQRLDYHPGLNVGFGARGTLF 90
LY + L G+++ G
Sbjct: 85 LYKGLGEELYALSGVDIRQHNGGMFK 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,118,941
Number of extensions: 179613
Number of successful extensions: 436
Number of sequences better than 10.0: 1
Number of HSP's gapped: 429
Number of HSP's successfully gapped: 25
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)