RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7634
         (206 letters)



>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli
           [TaxId: 562]}
          Length = 84

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
           A KK G STRN   R +   R   G ++  GE V  GSI+     QR   +H G NVG G
Sbjct: 1   AHKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIV---RQRGTKFHAGANVGCG 53

Query: 85  ARGTLFAMEKGKVKITVEK 103
              TLFA   GKVK  V+ 
Sbjct: 54  RDHTLFAKADGKVKFEVKG 72



 Score = 32.0 bits (73), Expect = 0.008
 Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLN 206
           A KK G STRN   R +   R   G ++  GE V  GSI+     QR   +H G N
Sbjct: 1   AHKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSII---VRQRGTKFHAGAN 49


>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 84

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
           A KK   S++N   R ++      G +K  GEVV+ G+IL     QR   +  G  VG G
Sbjct: 1   AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILV---RQRGTKFKAGQGVGMG 53

Query: 85  ARGTLFAMEKGKVKITVEKCN 105
              TLFA+  GKV    +   
Sbjct: 54  RDHTLFALSDGKVVFINKGKG 74



 Score = 32.0 bits (73), Expect = 0.008
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLN 206
           A KK   S++N   R ++      G +K  GEVV+ G+IL     QR   +  G  
Sbjct: 1   AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNIL---VRQRGTKFKAGQG 49


>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus
           [TaxId: 274]}
          Length = 66

 Score = 45.0 bits (107), Expect = 1e-07
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 50  GFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFGARGTLFAMEKGKVKITVEK 103
           G ++ EG+VV  G+IL     QR   + PG NVG G   TLFA+  G V+     
Sbjct: 3   GVKRYEGQVVRAGNILV---RQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG 54


>d2q4ma1 d.23.1.2 (A:24-212) Hypothetical protein At5g01750 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 189

 Score = 26.8 bits (59), Expect = 1.3
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 93  EKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRNA 152
             G +   V++         V+ + SG   + + +K + +     H R++ V      + 
Sbjct: 36  VNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSM-----HDRWQ-VFRGGSTDQ 89

Query: 153 AKKTGTSTRNKPIRKNSGFR 172
                T  R+  ++  +   
Sbjct: 90  RDLLYTVKRSSMLQLKTKLD 109


>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
           thermophilus [TaxId: 274]}
          Length = 101

 Score = 25.8 bits (57), Expect = 1.6
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 84  GARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYS 118
           G  G +  +   K  + VE  N+  K   V   Y 
Sbjct: 21  GRVGKVKEVLPKKYAVIVEGVNIVKKAVRVSPKYP 55


>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
           {Deinococcus radiodurans [TaxId: 1299]}
          Length = 110

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 13/84 (15%)

Query: 84  GARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH-IH------VLPEE 136
           G  G +        K+ VE  N+  K+     + +  +G    ++  +H      V PE 
Sbjct: 28  GQTGKVLLALPRDQKVVVEGVNVITKNVKP--SMTNPQGGQEQRELALHASKVALVDPET 85

Query: 137 QHS---RFRLVDEPRVRNAAKKTG 157
             +   R ++VD  +VR  A  +G
Sbjct: 86  GKATRVRKQIVDGKKVR-VAVASG 108


>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
          Length = 139

 Score = 25.6 bits (55), Expect = 3.6
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 96  KVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLP-EEQHSRFRLVDEPRVRNAAK 154
                  +          + N   + G  ++  H+H++P   +   F  V +    +   
Sbjct: 65  PKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYKP 124

Query: 155 KTGTSTRNKPIRKN 168
           +   +  +  I K 
Sbjct: 125 EDLQNISSS-IAKR 137


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0683    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 764,167
Number of extensions: 35083
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 13
Length of query: 206
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,295,466
Effective search space: 161933250
Effective search space used: 161933250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)