RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7639
(2568 letters)
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 970 bits (2509), Expect = 0.0
Identities = 402/585 (68%), Positives = 483/585 (82%), Gaps = 5/585 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 680
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 801 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 920 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 979
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 980 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1039
VMTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 1040 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1099
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 1100 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTNFFCG 1202
KEE++ K ++++ C P+M+KM+ AGG G MP G P G
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGG 635
Score = 967 bits (2502), Expect = 0.0
Identities = 407/603 (67%), Positives = 488/603 (80%), Gaps = 26/603 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 2049
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 2170 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 2289 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 2348
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 2349 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 2408
VMTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 2409 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 2468
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 2469 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMH---GGASAGDMPRG------------------GPTVE 2565
KEE++ K ++++ C P+M+KM+ GG G MP G GPTVE
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPTVE 650
Query: 2566 EVD 2568
EVD
Sbjct: 651 EVD 653
Score = 965 bits (2495), Expect = 0.0
Identities = 399/578 (69%), Positives = 481/578 (83%), Gaps = 5/578 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 107
GDAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE
Sbjct: 52 GDAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGE 111
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+
Sbjct: 112 KKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVL 171
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
RI+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLG
Sbjct: 172 RIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLG 230
Query: 228 GEDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
GEDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L+
Sbjct: 231 GEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLF 290
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
+GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQS
Sbjct: 291 EGIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQS 350
Query: 347 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 406
L+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGG
Sbjct: 351 LIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGG 410
Query: 407 VMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 466
VM+KLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAP
Sbjct: 411 VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAP 470
Query: 467 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 526
RGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK E
Sbjct: 471 RGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAE 530
Query: 527 DERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
DE +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+
Sbjct: 531 DEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAE 590
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 622
KEE++ K ++++ C P+M+KM+ AGG G MP G
Sbjct: 591 KEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628
Score = 964 bits (2494), Expect = 0.0
Identities = 399/577 (69%), Positives = 480/577 (83%), Gaps = 5/577 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGER 1477
DAAKNQVA NP+NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE+
Sbjct: 53 DAAKNQVARNPENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEK 112
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
KTF PEEISSMVL KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 113 KTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLR 172
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAA+AYGLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 173 IINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 231
Query: 1598 EDFDNRLVSHLAEEFKRKYK-KDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 1656
EDFDNRLV ++FKRK + KD+S N RALRRLRT ERAKRTLSSST+A+IEID+L++
Sbjct: 232 EDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFE 291
Query: 1657 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
GID+ ISRARFEELC D FR+TLQPVEK L+DA +DK ++H+VVLVGGSTRIPKVQSL
Sbjct: 292 GIDYNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSL 351
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGGV
Sbjct: 352 IKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGV 411
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
MTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAPR
Sbjct: 412 MTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPR 471
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK ED
Sbjct: 472 GVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAED 531
Query: 1897 ERQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
E +ER+ A+N LE Y +++K L + KL++S+K+ + D L+WL+ N LA+K
Sbjct: 532 EANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 1955 EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1991
EE++ K ++++ C P+M+KM+ AGG G MP G
Sbjct: 592 EEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGM 628
Score = 372 bits (956), Expect = e-112
Identities = 158/237 (66%), Positives = 191/237 (80%), Gaps = 7/237 (2%)
Query: 1197 TNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 1256
+FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ETAGGVM
Sbjct: 353 KDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVM 412
Query: 1257 SKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1316
+KLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIPPAPRG
Sbjct: 413 TKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRG 472
Query: 1317 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1376
VP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+YK EDE
Sbjct: 473 VPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDE 532
Query: 1377 RQKERISARNNLEAYVFNVKQAL--DNAGNKLTESEKSRCREECDAA-----KNQVA 1426
+ER+ A+N LE Y +++K L + KL++S+K+ + D A KNQ+A
Sbjct: 533 ANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLA 589
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 872 bits (2256), Expect = 0.0
Identities = 346/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 680
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 859
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 860 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 978
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 979 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1038
GVMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 1039 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1098
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 1099 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 1157
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMH 1180
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
Score = 872 bits (2256), Expect = 0.0
Identities = 346/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 2049
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 2228
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 2229 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 2347
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 2348 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 2407
GVMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 2408 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 2467
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 2468 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 2526
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMH 2549
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
Score = 870 bits (2250), Expect = 0.0
Identities = 345/563 (61%), Positives = 424/563 (75%), Gaps = 16/563 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGE 107
G AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 47 GQAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE 106
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+
Sbjct: 107 --TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVL 164
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
RI+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLG
Sbjct: 165 RIINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLG 222
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY 286
GEDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 223 GEDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAM 282
Query: 287 -DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 345
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 283 ADGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQ 342
Query: 346 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 405
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET G
Sbjct: 343 ELVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLG 399
Query: 406 GVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 465
GVM+KLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPA
Sbjct: 400 GVMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPA 459
Query: 466 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 525
PRGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y
Sbjct: 460 PRGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAA 518
Query: 526 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-AD 584
ED+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL D
Sbjct: 519 EDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGED 574
Query: 585 KEEYQDKLQQLQKSCMPLMSKMH 607
KEE + K ++LQK P+ +M+
Sbjct: 575 KEEIEAKTEELQKVVQPIGERMY 597
Score = 870 bits (2249), Expect = 0.0
Identities = 345/562 (61%), Positives = 423/562 (75%), Gaps = 16/562 (2%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCS-KPKIQVEFKGER 1477
AAK Q NPKNTVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE
Sbjct: 48 QAAKRQAVTNPKNTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE- 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
TF PE+IS+MVL K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 107 -TFTPEQISAMVLQKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLR 165
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAALAYGLDK ERNVL+FDLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDKK-DKERNVLVFDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEIDALY- 1655
EDFDNRLV H EEFK+KY D+S +PRAL+RLR AAE+AK LSS TE ++
Sbjct: 224 EDFDNRLVDHFVEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMA 283
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG D ++RA+FEELC+DLF TL+PVEKAL+DAKL KS I +VVLVGGSTRIP VQ
Sbjct: 284 DGKDVSGTLTRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQE 343
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
L++ FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET GG
Sbjct: 344 LVKEFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLGG 400
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
VMTKLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPAP
Sbjct: 401 VMTKLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAP 460
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
RGVP+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y E
Sbjct: 461 RGVPQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAE 519
Query: 1896 DERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL-ADK 1954
D+++KERI A+N E YV++++++L G+KL E++K ++ + ++WL DK
Sbjct: 520 DKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGEDK 575
Query: 1955 EEYQDKLQQLQKSCMPLMSKMH 1976
EE + K ++LQK P+ +M+
Sbjct: 576 EEIEAKTEELQKVVQPIGERMY 597
Score = 330 bits (849), Expect = 2e-98
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 4/219 (1%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
FF GK + +NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET GGVM+
Sbjct: 347 EFF-GKEPSKGVNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLGGVMT 403
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
KLI RNT IP K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPAPRGV
Sbjct: 404 KLIPRNTTIPTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGV 463
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DANGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y ED++
Sbjct: 464 PQIEVTFDIDANGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKK 522
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1416
+KERI A+N E YV++++++L G+KL E++K + E
Sbjct: 523 RKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEE 561
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 805 bits (2083), Expect = 0.0
Identities = 300/573 (52%), Positives = 395/573 (68%), Gaps = 21/573 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGD 1190
KE + K ++L ++ L M+ A A
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAA 606
Score = 805 bits (2081), Expect = 0.0
Identities = 300/578 (51%), Positives = 395/578 (68%), Gaps = 21/578 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G K
Sbjct: 52 QPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG--K 106
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI
Sbjct: 107 KYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRI 166
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG+
Sbjct: 167 INEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGD 223
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 224 DFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADA 283
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P VQ
Sbjct: 284 SGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQ 343
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET G
Sbjct: 344 ELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLG 398
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPPA
Sbjct: 399 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPA 458
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE +
Sbjct: 459 PRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAE 517
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L DK
Sbjct: 518 EDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DK 574
Query: 1955 EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGD 1992
E + K ++L ++ L M+ A A D
Sbjct: 575 EAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKD 612
Score = 804 bits (2080), Expect = 0.0
Identities = 300/579 (51%), Positives = 396/579 (68%), Gaps = 21/579 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+KLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGD 623
KE + K ++L ++ L M+ A A D
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKD 612
Score = 803 bits (2077), Expect = 0.0
Identities = 304/591 (51%), Positives = 399/591 (67%), Gaps = 30/591 (5%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KRL+GR+ D ++Q+D+K P+ +V VE G
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG-- 105
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 106 KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 165
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG
Sbjct: 166 IINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGG 222
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ +LA+EFK++ D+ + AL+RL+ AAE+AK LSS+ + I I A
Sbjct: 223 DDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITAD 282
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K++RA+FEEL DL T++P ++AL+DA L S I +V+LVGGSTR+P V
Sbjct: 283 ASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAV 342
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET
Sbjct: 343 QELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETL 397
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTKLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPP
Sbjct: 398 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE
Sbjct: 458 APRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANA 516
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ED+++KE + ARN ++ ++ ++ L G+K+ EK + + L D
Sbjct: 517 EEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---D 573
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPT---------VEEVD 2568
KE + K ++L ++ L M+ A A G EEV
Sbjct: 574 KEAIKAKTEELTQASQKLGEAMYQQAQAAQGAAGAAAKDDDVVDAEFEEVK 624
Score = 353 bits (908), Expect = e-106
Identities = 128/239 (53%), Positives = 165/239 (69%), Gaps = 16/239 (6%)
Query: 1194 GGPT----------NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 1243
GG T FF GK N +NPDE VA GAA+Q +L+GD ++DVLL+DVT
Sbjct: 334 GGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVT 388
Query: 1244 PLSLGIETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLG 1303
PLSLGIET GGVM+KLIERNT IP K++Q F+T ADNQPAVTI V +GER M DN LG
Sbjct: 389 PLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLG 448
Query: 1304 TFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDR 1363
F+LTGIPPAPRGVP+I+VTFD+DANGI++V+AKD +GK Q+ITI G LS EEI+R
Sbjct: 449 RFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITASSG-LSDEEIER 507
Query: 1364 MINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAK 1422
M+ DAE +ED+++KE + ARN ++ ++ ++ L G+K+ EK + K
Sbjct: 508 MVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELK 566
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family
are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone
system. All members of the seed alignment were taken from
completely sequenced bacterial or archaeal genomes and
(except for Mycoplasma sequence) found clustered with
other genes of this systems. This model excludes DnaK
homologs that are not DnaK itself, such as the heat shock
cognate protein HscA (TIGR01991). However, it is not
designed to distinguish among DnaK paralogs in
eukaryotes. Note that a number of dnaK genes have shadow
ORFs in the same reverse (relative to dnaK) reading
frame, a few of which have been assigned glutamate
dehydrogenase activity. The significance of this
observation is unclear; lengths of such shadow ORFs are
highly variable as if the presumptive protein product is
not conserved [Protein fate, Protein folding and
stabilization].
Length = 595
Score = 723 bits (1869), Expect = 0.0
Identities = 305/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 1158 KEEYQDKLQQLQKSCMPLMSKM 1179
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
Score = 723 bits (1869), Expect = 0.0
Identities = 305/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 2527 KEEYQDKLQQLQKSCMPLMSKM 2548
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
Score = 721 bits (1862), Expect = 0.0
Identities = 304/562 (54%), Positives = 394/562 (70%), Gaps = 21/562 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K +
Sbjct: 49 GQPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDG 102
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+R
Sbjct: 103 KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLR 162
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG
Sbjct: 163 IINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGG 220
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 221 DDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITAD 280
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP V
Sbjct: 281 ASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAV 340
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET
Sbjct: 341 QELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETL 395
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+KLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPP
Sbjct: 396 GGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPP 455
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE
Sbjct: 456 APRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANA 514
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
+ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 515 EEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---D 571
Query: 585 KEEYQDKLQQLQKSCMPLMSKM 606
EE + K ++LQ++ L M
Sbjct: 572 VEEIKAKTEELQQALQKLAEAM 593
Score = 721 bits (1862), Expect = 0.0
Identities = 304/561 (54%), Positives = 393/561 (70%), Gaps = 21/561 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT++ KR +GR+FD ++ ++ K P+ VV D V K + K
Sbjct: 50 QPAKRQAVTNPENTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDGK 103
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI
Sbjct: 104 EYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRI 163
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK+ K + +L+FDLGGGTFDVSIL I +G +FEV STAGDTHLGG+
Sbjct: 164 INEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGGD 221
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ LA+EFK++ D+S + AL+RL+ AAE+AK LSS I I A
Sbjct: 222 DFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADA 281
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
G ++RA+FEEL +DL T +PV +AL+DA L S I +V+LVGGSTRIP VQ
Sbjct: 282 SGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQ 341
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L+++FF GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET G
Sbjct: 342 ELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLG 396
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTKLIERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPPA
Sbjct: 397 GVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPA 456
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE +
Sbjct: 457 PRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAE 515
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+++KE I ARNN ++ + ++ L AG+KL EK + + + L D
Sbjct: 516 EDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DV 572
Query: 1955 EEYQDKLQQLQKSCMPLMSKM 1975
EE + K ++LQ++ L M
Sbjct: 573 EEIKAKTEELQQALQKLAEAM 593
Score = 325 bits (834), Expect = 2e-96
Identities = 128/224 (57%), Positives = 163/224 (72%), Gaps = 5/224 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F GK N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET GGVM+KL
Sbjct: 347 FFGKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKL 402
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
IERNT IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPPAPRGVP+
Sbjct: 403 IERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQ 462
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I+VTFD+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE +ED+++K
Sbjct: 463 IEVTFDIDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRK 521
Query: 1380 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKN 1423
E I ARNN ++ + ++ L AG+KL EK + + K
Sbjct: 522 EEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKE 565
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 688 bits (1777), Expect = 0.0
Identities = 269/331 (81%), Positives = 298/331 (90%), Gaps = 1/331 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE
Sbjct: 47 GDAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGET 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 107 KTFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGG
Sbjct: 167 IINEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGG 225
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++G
Sbjct: 226 EDFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEG 285
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
IDFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LL
Sbjct: 286 IDFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLL 345
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
Q+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 346 QDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 685 bits (1770), Expect = 0.0
Identities = 268/330 (81%), Positives = 297/330 (90%), Gaps = 1/330 (0%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
DAAKNQVAMNP NTVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE K
Sbjct: 48 DAAKNQVAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETK 107
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
TF PEEISSMVLTKMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+RI
Sbjct: 108 TFYPEEISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRI 167
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLDK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGGE
Sbjct: 168 INEPTAAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGE 226
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDNRLV+H +EFKRK+KKD+S N RALRRLRTA ERAKRTLSSST+ASIEID+L++GI
Sbjct: 227 DFDNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGI 286
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
DFYT I+RARFEELC+DLFR TL+PVEK L+DAKLDKS IHD+VLVGGSTRIPKVQ LLQ
Sbjct: 287 DFYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQ 346
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 63.5 bits (155), Expect = 6e-10
Identities = 26/30 (86%), Positives = 27/30 (90%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 347 DFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 647 bits (1670), Expect = 0.0
Identities = 305/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 981
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 982 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 1041
T +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 1042 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 1101
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 1102 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 1161
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 1162 QDKLQQLQKSCMPLMSKM 1179
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
Score = 647 bits (1670), Expect = 0.0
Identities = 305/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 2350
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 2351 TKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 2410
T +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 2411 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 2470
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 2471 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 2530
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 2531 QDKLQQLQKSCMPLMSKM 2548
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
Score = 645 bits (1666), Expect = 0.0
Identities = 304/558 (54%), Positives = 385/558 (68%), Gaps = 36/558 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AAK Q NP+NT+F KR IGR + KI VE G
Sbjct: 55 GQAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG-- 92
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R
Sbjct: 93 KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLR 152
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG
Sbjct: 153 LINEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGG 209
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
+DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++
Sbjct: 210 DDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD 269
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
ID +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L+
Sbjct: 270 IDLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELV 329
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 408
+ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV
Sbjct: 330 KEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVR 384
Query: 409 SKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRG 468
+ +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRG
Sbjct: 385 TPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRG 444
Query: 469 VPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 528
VP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D+
Sbjct: 445 VPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDK 503
Query: 529 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEY 588
+ +E + ARN E+ ++++++AL K++E EK + E + L+ +KEE
Sbjct: 504 KFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEI 558
Query: 589 QDKLQQLQKSCMPLMSKM 606
+ K+++LQ+ L K
Sbjct: 559 KAKIEELQEVTQKLAEKK 576
Score = 644 bits (1663), Expect = 0.0
Identities = 304/557 (54%), Positives = 384/557 (68%), Gaps = 36/557 (6%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AAK Q NP+NT+F KR IGR + KI VE G K
Sbjct: 56 QAAKRQAVDNPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--K 93
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ PEEIS+M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R+
Sbjct: 94 KYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRL 153
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG+
Sbjct: 154 INEPTAAALAYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGD 210
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDN L+ +L EFK K D+ + AL+RLR AAE+AK LSS+T+ SI + ++ I
Sbjct: 211 DFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI 270
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
D +++RA+FEEL DL T++PVE+AL+DA L+KS I V+LVGGSTRIP VQ L++
Sbjct: 271 DLLKELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVK 330
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMT 1778
FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV T
Sbjct: 331 EFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRT 385
Query: 1779 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1838
+IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRGV
Sbjct: 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGV 445
Query: 1839 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1898
P+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D++
Sbjct: 446 PQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKK 504
Query: 1899 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQ 1958
+E + ARN E+ ++++++AL K++E EK + E + L+ +KEE +
Sbjct: 505 FRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG----EKEEIK 559
Query: 1959 DKLQQLQKSCMPLMSKM 1975
K+++LQ+ L K
Sbjct: 560 AKIEELQEVTQKLAEKK 576
Score = 255 bits (654), Expect = 8e-73
Identities = 128/243 (52%), Positives = 164/243 (67%), Gaps = 11/243 (4%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET GGV +
Sbjct: 331 EFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIETLGGVRT 385
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
+IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIPPAPRGV
Sbjct: 386 PIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGV 445
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1377
P+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE D++
Sbjct: 446 PQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKK 504
Query: 1378 QKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDAK 1437
+E + ARN E+ ++++++AL K++E EK + E + + + + K
Sbjct: 505 FRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEAL----EGEKEEIK 559
Query: 1438 RLI 1440
I
Sbjct: 560 AKI 562
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 618 bits (1596), Expect = 0.0
Identities = 295/583 (50%), Positives = 393/583 (67%), Gaps = 21/583 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVMTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 2527 K-EEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPTVEEVD 2568
E + L++LQK+ M + +++ S D V + D
Sbjct: 575 NYESIKSLLEELQKALMEIGKEVYSSTSTTDPASNDDDVIDTD 617
Score = 617 bits (1592), Expect = 0.0
Identities = 291/557 (52%), Positives = 384/557 (68%), Gaps = 21/557 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVMTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 1158 K-EEYQDKLQQLQKSCM 1173
E + L++LQK+ M
Sbjct: 575 NYESIKSLLEELQKALM 591
Score = 615 bits (1589), Expect = 0.0
Identities = 290/554 (52%), Positives = 383/554 (69%), Gaps = 21/554 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E K F
Sbjct: 54 AKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALNKDF 110
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+RI+N
Sbjct: 111 SPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIIN 170
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG+DF
Sbjct: 171 EPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDF 227
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A G
Sbjct: 228 DKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTG 287
Query: 1658 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +Q L
Sbjct: 288 PKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQEL 347
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET GGV
Sbjct: 348 VKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGV 402
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
MTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPPAPR
Sbjct: 403 MTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPR 462
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+ ED
Sbjct: 463 GVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAED 521
Query: 1897 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK-E 1955
+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D E
Sbjct: 522 KEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQNDNYE 577
Query: 1956 EYQDKLQQLQKSCM 1969
+ L++LQK+ M
Sbjct: 578 SIKSLLEELQKALM 591
Score = 615 bits (1587), Expect = 0.0
Identities = 290/557 (52%), Positives = 384/557 (68%), Gaps = 21/557 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q +NP+NT + KR IGRKF + I ++ K + V D S I++E
Sbjct: 51 GQIAKRQAVINPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALN 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K F+PEEIS+ VL K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 108 KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAA+LAYGLDK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG
Sbjct: 168 IINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD ++V+ L +EFK+K D+S + +AL+RL AAE+AK LS+ T+ I I A
Sbjct: 225 DDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITAT 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G ++RA+FEELCSDL PVE AL+DAKLDKS I +VVLVGGSTRIP +
Sbjct: 285 QTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAI 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETL 399
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM+K+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPP
Sbjct: 400 GGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPP 459
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 460 APRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNA 518
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
ED+ ++E+I +N E+ + ++ L +K++E +K E+ + +K L D
Sbjct: 519 AEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQND 574
Query: 585 K-EEYQDKLQQLQKSCM 600
E + L++LQK+ M
Sbjct: 575 NYESIKSLLEELQKALM 591
Score = 264 bits (677), Expect = 2e-75
Identities = 111/212 (52%), Positives = 155/212 (73%), Gaps = 5/212 (2%)
Query: 1202 GKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIE 1261
GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET GGVM+K+I
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVETLGGVMTKIIP 408
Query: 1262 RNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKID 1321
RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIPPAPRGVP+I+
Sbjct: 409 RNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIE 468
Query: 1322 VTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKER 1381
VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+ ED+ ++E+
Sbjct: 469 VTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREK 527
Query: 1382 ISARNNLEAYVFNVKQALDNAGNKLTESEKSR 1413
I +N E+ + ++ L +K++E +K +
Sbjct: 528 IDLKNQAESLCYQAEKQLKELKDKISEEKKEK 559
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 603 bits (1556), Expect = 0.0
Identities = 281/580 (48%), Positives = 397/580 (68%), Gaps = 19/580 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 859 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGV T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPT 1197
+ +DK +QLQ++ + + + +
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSE 654
Score = 601 bits (1552), Expect = 0.0
Identities = 283/580 (48%), Positives = 401/580 (69%), Gaps = 19/580 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 2228 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGV T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 2527 KEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPTVEE 2566
+ +DK +QLQ++ + + + ++ + T E
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSE 654
Score = 600 bits (1549), Expect = 0.0
Identities = 280/575 (48%), Positives = 396/575 (68%), Gaps = 19/575 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++ +
Sbjct: 93 AKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK--Y 149
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+RI+N
Sbjct: 150 SPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIIN 209
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGGEDF
Sbjct: 210 EPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGGEDF 266
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A G
Sbjct: 267 DQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSG 326
Query: 1658 ID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 327 PKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSET 386
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 1776
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET GGV
Sbjct: 387 VKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETLGGV 441
Query: 1777 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1836
T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPPAPR
Sbjct: 442 FTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPR 501
Query: 1837 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1896
GVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK++D
Sbjct: 502 GVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYKEQD 560
Query: 1897 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEE 1956
E++KE + A+N E +++V++ L + +K+++++K +++ L + D +
Sbjct: 561 EKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDS 617
Query: 1957 YQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1991
+DK +QLQ++ + + + +
Sbjct: 618 IKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTN 652
Score = 599 bits (1546), Expect = 0.0
Identities = 280/578 (48%), Positives = 397/578 (68%), Gaps = 19/578 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NTVF KRLIGR++D+ +++ K P+ +V S +E +G++
Sbjct: 90 GIVAKRQAVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK 148
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
++P +I + VL KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+R
Sbjct: 149 --YSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLR 206
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALA+G+DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGG
Sbjct: 207 IINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGG 263
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
EDFD R++++L EFK++ D+ + AL+RLR AAE AK LSS T+ I I A
Sbjct: 264 EDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITAD 323
Query: 286 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K+SRA+ EEL DL + T++P EK ++DA + K ++DV+LVGG TR+PKV
Sbjct: 324 QSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKV 383
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 384 SETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIETL 438
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGV ++LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIPP
Sbjct: 439 GGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPP 498
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE YK
Sbjct: 499 APRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEYK 557
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 584
++DE++KE + A+N E +++V++ L + +K+++++K +++ L + D
Sbjct: 558 EQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---D 614
Query: 585 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 622
+ +DK +QLQ++ + + + +
Sbjct: 615 VDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTN 652
Score = 267 bits (685), Expect = 4e-76
Identities = 121/236 (51%), Positives = 173/236 (73%), Gaps = 8/236 (3%)
Query: 1191 MPRGGPT--NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 1248
MP+ T F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLG
Sbjct: 380 MPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLG 434
Query: 1249 IETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLT 1308
IET GGV ++LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL
Sbjct: 435 IETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLV 494
Query: 1309 GIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDA 1368
GIPPAPRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +A
Sbjct: 495 GIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEA 553
Query: 1369 ERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQ 1424
E YK++DE++KE + A+N E +++V++ L + +K+++++K +++ ++
Sbjct: 554 EEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRST 609
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 596 bits (1539), Expect = 0.0
Identities = 278/577 (48%), Positives = 390/577 (67%), Gaps = 23/577 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 678
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 855
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 856 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 974
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 975 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 1034
ET G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 1035 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 1094
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 1095 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 1154
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 1155 LADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM 1191
+ EE + +L++ Q++ + + ++++ G + +
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTV 611
Score = 596 bits (1538), Expect = 0.0
Identities = 279/580 (48%), Positives = 390/580 (67%), Gaps = 23/580 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 2047
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 2224
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 2225 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 2343
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 2344 ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 2403
ET G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 2404 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 2463
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 2464 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 2523
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 2524 LADKEEYQDKLQQLQKSCMPLMSKMHGGASAGDMPRGGPT 2563
+ EE + +L++ Q++ + + ++++ + PT
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPT 614
Score = 595 bits (1536), Expect = 0.0
Identities = 280/603 (46%), Positives = 397/603 (65%), Gaps = 31/603 (5%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFKGER 1477
AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +G
Sbjct: 54 AKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIRG-- 105
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
+ + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL V+R
Sbjct: 106 RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLR 165
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
I+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ HLGG
Sbjct: 166 IINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGG 223
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 1654
+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I A
Sbjct: 224 DDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITAD 283
Query: 1655 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 1713
G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRIP V
Sbjct: 284 ETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAV 343
Query: 1714 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 1773
Q +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGIET
Sbjct: 344 QEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETL 399
Query: 1774 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1833
G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTGIPP
Sbjct: 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPP 459
Query: 1834 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1893
APRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE+Y
Sbjct: 460 APRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYA 518
Query: 1894 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1953
+ED R+K+ I +N ++ +++ + L G ++E K R ++ + L + +
Sbjct: 519 EEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNI-S 577
Query: 1954 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM--------PRGGDAAKNQVAMNPKNT 2005
EE + +L++ Q++ + + ++++ G + + +++ ++ N
Sbjct: 578 LEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDEFNF 637
Query: 2006 VFD 2008
FD
Sbjct: 638 DFD 640
Score = 594 bits (1533), Expect = 0.0
Identities = 280/606 (46%), Positives = 398/606 (65%), Gaps = 31/606 (5%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPK---IQVEFK 105
G AK Q N +NTV+ KR IGR++DD +++ P+T C K + + V+ +
Sbjct: 51 GQLAKRQAVTNAENTVYSIKRFIGRRWDD--TEEERSRVPYT----CVKGRDDTVNVQIR 104
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 165
G + + P+EIS+M+L K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL
Sbjct: 105 G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLE 162
Query: 166 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 225
V+RI+NEPTAAALAYGLDK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ H
Sbjct: 163 VLRIINEPTAAALAYGLDKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNH 220
Query: 226 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---I 282
LGG+DFDN +V L E F+++ D+S + AL+RLR AAE+AK LSS SI I
Sbjct: 221 LGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFI 280
Query: 283 DALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
A G +++RA+FEEL DL +T++P+++AL+DA L I V+LVGGSTRI
Sbjct: 281 TADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRI 340
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGI 401
P VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGI
Sbjct: 341 PAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGI 396
Query: 402 ETAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTG 461
ET G V +K+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTG
Sbjct: 397 ETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTG 456
Query: 462 IPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAE 521
IPPAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE
Sbjct: 457 IPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAE 515
Query: 522 RYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 581
+Y +ED R+K+ I +N ++ +++ + L G ++E K R ++ + L +
Sbjct: 516 KYAEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPN 575
Query: 582 LADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM--------PRGGDAAKNQVAMNP 633
+ EE + +L++ Q++ + + ++++ G + + +++ ++
Sbjct: 576 I-SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTVEPTSDTLITATMNSSNETTLIDE 634
Query: 634 KNTVFD 639
N FD
Sbjct: 635 FNFDFD 640
Score = 261 bits (670), Expect = 3e-74
Identities = 113/242 (46%), Positives = 164/242 (67%), Gaps = 6/242 (2%)
Query: 1199 FFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSK 1258
FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGIET G V +K
Sbjct: 350 FFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIETLGEVFTK 405
Query: 1259 LIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVP 1318
+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTGIPPAPRGVP
Sbjct: 406 IIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVP 465
Query: 1319 KIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQ 1378
+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE+Y +ED R+
Sbjct: 466 QIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRR 524
Query: 1379 KERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDAKR 1438
K+ I +N ++ +++ + L G ++E K R ++ + + +P ++ + K+
Sbjct: 525 KQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLE-AALTDPNISLEELKQ 583
Query: 1439 LI 1440
+
Sbjct: 584 QL 585
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 561 bits (1449), Expect = 0.0
Identities = 218/328 (66%), Positives = 267/328 (81%), Gaps = 2/328 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
GDAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+
Sbjct: 49 GDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEK 108
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 109 KTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVR 168
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGG
Sbjct: 169 IINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGG 226
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR LSS + IEI++L+DG
Sbjct: 227 EDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDG 286
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I ++VLVGGSTRIPKVQ LL
Sbjct: 287 EDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLL 346
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+ FF GK + INPDEAVAYGAAVQA
Sbjct: 347 KEFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 560 bits (1444), Expect = 0.0
Identities = 222/346 (64%), Positives = 274/346 (79%), Gaps = 5/346 (1%)
Query: 1403 GNKLTESEKSRCREE---CDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT 1459
GN++T S + E DAAKNQ NP+NT+FD KRLIGRKFDD ++Q+D+K P+
Sbjct: 31 GNRITPSYVAFTDGERLIGDAAKNQATSNPENTIFDVKRLIGRKFDDKEVQKDIKLLPYK 90
Query: 1460 VVNDCSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDA 1519
VVN KP I+V+ KGE+KTF+PEEIS+MVLTKMKE AEAYLG V+ AV+TVPAYFNDA
Sbjct: 91 VVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEIAEAYLGKKVKHAVVTVPAYFNDA 150
Query: 1520 QRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID 1579
QRQATKDAG IAGLNV+RI+NEPTAAA+AYGLDK GE+N+L+FDLGGGTFDVS+L+ID
Sbjct: 151 QRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSLLTID 209
Query: 1580 EGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKR 1639
G +FEV +T GDTHLGGEDFD R++ H + FK+K+ KD+S + RAL++LR E+AKR
Sbjct: 210 NG-VFEVLATNGDTHLGGEDFDQRVMEHFIKLFKKKHGKDISKDKRALQKLRREVEKAKR 268
Query: 1640 TLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH 1699
LSS + IEI++L+DG DF ++RA+FEEL DLF+ TL+PV+K L+DA L KS I
Sbjct: 269 ALSSQHQTRIEIESLFDGEDFSETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDID 328
Query: 1700 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
++VLVGGSTRIPKVQ LL+ FF GK + INPDEAVAYGAAVQA
Sbjct: 329 EIVLVGGSTRIPKVQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
Score = 50.4 bits (121), Expect = 9e-06
Identities = 19/26 (73%), Positives = 20/26 (76%)
Query: 1199 FFCGKSLNLSINPDEAVAYGAAVQAA 1224
FF GK + INPDEAVAYGAAVQA
Sbjct: 349 FFNGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 569 bits (1469), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 285
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 404
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 405 GGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 464
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 465 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 524
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 525 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 580
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 581 TLADKEEYQDKLQ 593
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
Score = 569 bits (1468), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 858
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 1153
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 1154 TLADKEEYQDKLQ 1166
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
Score = 569 bits (1468), Expect = e-180
Identities = 260/553 (47%), Positives = 364/553 (65%), Gaps = 20/553 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++
Sbjct: 51 GQLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLE 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
+ FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V R
Sbjct: 108 REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVER 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 168 ILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDAL 2227
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 225 NDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITAT 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P V
Sbjct: 285 EDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMV 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
Q L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 345 QQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETI 399
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPP
Sbjct: 400 GGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPP 459
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 460 APRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKA 518
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNN 2522
DED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 519 DEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQD 578
Query: 2523 TLADKEEYQDKLQ 2535
+ + LQ
Sbjct: 579 DDRELDLAVADLQ 591
Score = 566 bits (1462), Expect = e-179
Identities = 259/552 (46%), Positives = 363/552 (65%), Gaps = 20/552 (3%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
A+ Q+ +NP+NT ++ KR IGR++D+ + + K P+T+ + + ++++ +
Sbjct: 52 QLARRQLVLNPQNTFYNLKRFIGRRYDE--LDPESKRVPYTIRRN-EQGNVRIKCPRLER 108
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
FAPEE+S+M+L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V RI
Sbjct: 109 EFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERI 168
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG
Sbjct: 169 LNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGN 225
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS--SSTEASIE-IDALY 1655
DFD R+V LAE+F K D+ + +AL+RL AAE+AK LS S T+ S+ I A
Sbjct: 226 DFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATE 285
Query: 1656 DG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
DG T++ R +FE LC DL L+PV++AL+DA L I +VVLVGGSTR+P VQ
Sbjct: 286 DGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQ 345
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET G
Sbjct: 346 QLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIG 400
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPPA
Sbjct: 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPA 460
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE D
Sbjct: 461 PRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKAD 519
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNA----GNKLTESEKSRCREECDATLKWLDNNT 1950
ED R++ERI RN + ++ L +A G E ++ L+ +
Sbjct: 520 EDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDD 579
Query: 1951 LADKEEYQDKLQ 1962
+ + LQ
Sbjct: 580 DRELDLAVADLQ 591
Score = 242 bits (619), Expect = 2e-67
Identities = 102/203 (50%), Positives = 143/203 (70%), Gaps = 5/203 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
+ N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+ET GGVM KL
Sbjct: 351 LIPREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLETIGGVMKKL 406
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GIPPAPRGVP+
Sbjct: 407 IPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQ 466
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
+ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE DED R++
Sbjct: 467 VQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRR 525
Query: 1380 ERISARNNLEAYVFNVKQALDNA 1402
ERI RN + ++ L +A
Sbjct: 526 ERIEKRNRALTLIAQAERRLRDA 548
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 554 bits (1430), Expect = e-175
Identities = 276/581 (47%), Positives = 379/581 (65%), Gaps = 25/581 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 859 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 975
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 976 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 1035
T GGVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 1036 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 1095
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 1096 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 1155
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 1156 ADK-EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 1195
+ ++ +D + L + M + ++ G AG P G
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGE 650
Score = 554 bits (1429), Expect = e-175
Identities = 278/597 (46%), Positives = 385/597 (64%), Gaps = 26/597 (4%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++ K F
Sbjct: 91 AKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIGKQF 147
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
A EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+RI+N
Sbjct: 148 AAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIIN 207
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG+DF
Sbjct: 208 EPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDF 264
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
D R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A DG
Sbjct: 265 DKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADG 324
Query: 1658 ---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP VQ
Sbjct: 325 PKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQ 382
Query: 1715 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 1774
L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+ET G
Sbjct: 383 ELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLG 437
Query: 1775 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1834
GVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GIPPA
Sbjct: 438 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 497
Query: 1835 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1894
PRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE++
Sbjct: 498 PRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAK 556
Query: 1895 EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADK 1954
ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L + +
Sbjct: 557 EDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIASGS 612
Query: 1955 -EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPK-NTVFDA 2009
++ +D + L + M + ++ G AG P G + + + + V DA
Sbjct: 613 TQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDA 669
Score = 553 bits (1427), Expect = e-175
Identities = 278/600 (46%), Positives = 386/600 (64%), Gaps = 26/600 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 286 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 402
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 403 TAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 462
T GGVM+K+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 463 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 522
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 523 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 582
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 583 ADK-EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQVAMNPK-NTVFDA 640
+ ++ +D + L + M + ++ G AG P G + + + + V DA
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAGSSSSSSSGGDGDDVIDA 669
Score = 549 bits (1415), Expect = e-173
Identities = 275/580 (47%), Positives = 378/580 (65%), Gaps = 27/580 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q +NP+NT F KR IGRK + + ++ K + VV D ++++
Sbjct: 88 GQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIG 144
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K FA EEIS+ VL K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+R
Sbjct: 145 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLR 204
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAA+LAYG +K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG
Sbjct: 205 IINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGG 261
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R+V LA FK+ D+ + +AL+RL AAE+AK LSS T+ SI I A
Sbjct: 262 DDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITAT 321
Query: 2228 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
DG ID T ++RA+FEELCSDL PVE AL+DAKL I +V+LVGGSTRIP
Sbjct: 322 ADGPKHID--TTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIP 379
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 2344
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+E
Sbjct: 380 AVQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLE 434
Query: 2345 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 2404
T GGVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GI
Sbjct: 435 TLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGI 494
Query: 2405 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 2464
PPAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE+
Sbjct: 495 PPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEK 553
Query: 2465 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 2524
+ ED+ +++ + +N ++ V+ ++ L G+K+ K E+ +A LK L +
Sbjct: 554 FAKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIA 609
Query: 2525 ADK-EEYQDKLQQLQKSCMPLMSKMH--GGASAGDMPRGG 2561
+ ++ +D + L + M + ++ GA GG
Sbjct: 610 SGSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGG 649
Score = 234 bits (599), Expect = 1e-64
Identities = 105/235 (44%), Positives = 158/235 (67%), Gaps = 5/235 (2%)
Query: 1202 GKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIE 1261
GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+ET GGVM+K+I
Sbjct: 390 GKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLGGVMTKIIP 445
Query: 1262 RNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKID 1321
RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GIPPAPRGVP+I+
Sbjct: 446 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 505
Query: 1322 VTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKER 1381
V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE++ ED+ +++
Sbjct: 506 VKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDA 564
Query: 1382 ISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVAMNPKNTVFDA 1436
+ +N ++ V+ ++ L G+K+ K + + K+ +A + DA
Sbjct: 565 VDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDA 619
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional.
Length = 657
Score = 501 bits (1290), Expect = e-156
Identities = 275/582 (47%), Positives = 385/582 (66%), Gaps = 17/582 (2%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G K
Sbjct: 77 AAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNGKQ 134
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R+V
Sbjct: 135 YSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVV 194
Query: 1540 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGED 1599
NEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGGED
Sbjct: 195 NEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGGED 251
Query: 1600 FDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYD 1656
FD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A D
Sbjct: 252 FDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANAD 311
Query: 1657 GID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
G ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 312 GAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVE 371
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET GG
Sbjct: 372 EVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGG 426
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
V T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPPAP
Sbjct: 427 VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAP 486
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
RGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++ +
Sbjct: 487 RGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEA 545
Query: 1896 DERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKE 1955
D ++E + RNN E + ++ L ++++EK + K ++N +A K+
Sbjct: 546 DRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA-KD 603
Query: 1956 EYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQ 1997
+ +LQK+ M + A A++G G+ + Q
Sbjct: 604 DLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQ 645
Score = 500 bits (1289), Expect = e-156
Identities = 275/586 (46%), Positives = 386/586 (65%), Gaps = 17/586 (2%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKG 106
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 73 LVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DG 130
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV
Sbjct: 131 NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNV 190
Query: 167 MRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226
+R+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHL
Sbjct: 191 IRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHL 247
Query: 227 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---ID 283
GGEDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I
Sbjct: 248 GGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFIT 307
Query: 284 ALYDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
A DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+P
Sbjct: 308 ANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMP 367
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 402
KV ++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIE
Sbjct: 368 KVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIE 422
Query: 403 TAGGVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 462
T GGV +++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GI
Sbjct: 423 TLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGI 482
Query: 463 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 522
PPAPRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E+
Sbjct: 483 PPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQ 541
Query: 523 YKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL 582
+ + D ++E + RNN E + ++ L ++++EK + K ++N +
Sbjct: 542 HAEADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNV 600
Query: 583 ADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGDAAKNQ 628
A K++ +LQK+ M + A A++G G+ + Q
Sbjct: 601 A-KDDLAAATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQ 645
Score = 499 bits (1286), Expect = e-156
Identities = 274/573 (47%), Positives = 382/573 (66%), Gaps = 17/573 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 75 GLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNG 132
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 133 KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIR 192
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGG
Sbjct: 193 VVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGG 249
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A
Sbjct: 250 EDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITAN 309
Query: 859 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 310 ADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKV 369
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 977
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET
Sbjct: 370 VEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETL 424
Query: 978 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 1037
GGV T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPP
Sbjct: 425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPP 484
Query: 1038 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 1097
APRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++
Sbjct: 485 APRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHA 543
Query: 1098 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 1157
+ D ++E + RNN E + ++ L ++++EK + K ++N +A
Sbjct: 544 EADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA- 601
Query: 1158 KEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGD 1190
K++ +LQK+ M + A A++G
Sbjct: 602 KDDLAAATDKLQKAVMECGRTEYQQAAAANSGS 634
Score = 498 bits (1283), Expect = e-155
Identities = 271/556 (48%), Positives = 376/556 (67%), Gaps = 17/556 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK Q NP++T + KRLIGR+F+D IQ+D+K+ P+ +V V+ G
Sbjct: 75 GLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVR-AGNGDAWVQ-DGNG 132
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I + VL KMKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R
Sbjct: 133 KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIR 192
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
+VNEPTAAALAYG+DK + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGG
Sbjct: 193 VVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGG 249
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFD L ++ EEF++ D+S AL+R+R AAE+AK LSS+ E + I A
Sbjct: 250 EDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITAN 309
Query: 2228 YDGID-FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
DG ISR++FE + L ++ P ++ ++DA ++ I+DVVLVGG TR+PKV
Sbjct: 310 ADGAQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKV 369
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETA 2346
++ FF K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET
Sbjct: 370 VEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETL 424
Query: 2347 GGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPP 2406
GGV T++I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPP
Sbjct: 425 GGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPP 484
Query: 2407 APRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 2466
APRGVP+I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++
Sbjct: 485 APRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHA 543
Query: 2467 DEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLAD 2526
+ D ++E + RNN E + ++ L ++++EK + K ++N +A
Sbjct: 544 EADRVKRELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVKTLVAELRKAMENPNVA- 601
Query: 2527 KEEYQDKLQQLQKSCM 2542
K++ +LQK+ M
Sbjct: 602 KDDLAAATDKLQKAVM 617
Score = 216 bits (550), Expect = 1e-58
Identities = 109/216 (50%), Positives = 153/216 (70%), Gaps = 6/216 (2%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET GGV +++
Sbjct: 376 FFQKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRM 431
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPPAPRGVP+
Sbjct: 432 IPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++ + D ++
Sbjct: 492 IEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKR 550
Query: 1380 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1415
E + RNN E + ++ L ++++EK +
Sbjct: 551 ELVEVRNNAETQLTTAERQL-GEWKYVSDAEKENVK 585
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 488 bits (1259), Expect = e-153
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 107
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 287
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 288 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 347
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 348 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 407
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 408 MSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 467
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 468 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 527
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 528 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 564
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
Score = 488 bits (1258), Expect = e-152
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 680
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 741 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 860
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 861 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 921 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 980
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 981 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 1040
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 1041 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 1100
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 1101 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 1137
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
Score = 488 bits (1258), Expect = e-152
Identities = 220/521 (42%), Positives = 322/521 (61%), Gaps = 32/521 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGE 2049
G A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G
Sbjct: 67 GYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL 123
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
K+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+
Sbjct: 124 -KS--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVL 180
Query: 2110 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
R++NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LG
Sbjct: 181 RLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALG 237
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 2229
G+DFD+ L + E+ + D P R L AA AK LS + + + AL+
Sbjct: 238 GDDFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQ 292
Query: 2230 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 2289
G I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+
Sbjct: 293 GE-----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREA 347
Query: 2290 LQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV 2349
+ FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG+
Sbjct: 348 VGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGL 404
Query: 2350 MTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPR 2409
+ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP
Sbjct: 405 VEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAA 464
Query: 2410 GVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 2469
G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED
Sbjct: 465 GAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEED 523
Query: 2470 ERQK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 2506
+ + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 524 MQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
Score = 485 bits (1252), Expect = e-152
Identities = 219/519 (42%), Positives = 321/519 (61%), Gaps = 32/519 (6%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDCSKPKIQVEFKGERK 1478
A+ A +PKNT+ KR +GR D IQQ H P+ V ++ P I+ G K
Sbjct: 69 EARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL-K 124
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P E+S+ +L +++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R+
Sbjct: 125 S--PVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRL 182
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LGG+
Sbjct: 183 LNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGD 239
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFD+ L + E+ + D P R L AA AK LS + + + AL+ G
Sbjct: 240 DFDHLLADWILEQAGLSPRLD----PEDQRLLLDAARAAKEALSDADSVEVSV-ALWQGE 294
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
I+R +F L + L + TL +AL+DA ++ + +VV+VGGSTR+P V+ +
Sbjct: 295 -----ITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVG 349
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMT 1778
FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG++
Sbjct: 350 EFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVE 406
Query: 1779 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1838
K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP G
Sbjct: 407 KIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGA 466
Query: 1839 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDER 1898
+I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED +
Sbjct: 467 ARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQ 525
Query: 1899 QK----ERISARNNLEAYVFNVKQALDNAGNKLTESEKS 1933
+ +++ A LEA ++ AL G+ L+ +E++
Sbjct: 526 ARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
Score = 205 bits (524), Expect = 2e-55
Identities = 95/231 (41%), Positives = 142/231 (61%), Gaps = 15/231 (6%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKL 1259
F G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+ET GG++ K+
Sbjct: 351 FFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLETMGGLVEKI 408
Query: 1260 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 1319
I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GIPP G +
Sbjct: 409 IPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAAR 468
Query: 1320 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 1379
I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+ + +ED + +
Sbjct: 469 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMSHAEEDMQAR 527
Query: 1380 ----ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDAAKNQVA 1426
+++ A LEA ++ AL G+ L+ +E R DAA +
Sbjct: 528 ALAEQKVEAERVLEA----LQAALAADGDLLSAAE----RAAIDAAMAALR 570
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 229 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 285
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 286 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 345
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 346 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 405
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 406 GVMSKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 465
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 466 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 525
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 526 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 563
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 802 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 858
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 859 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 978
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 979 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 1038
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 1039 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 1098
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 1099 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1136
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
Score = 483 bits (1245), Expect = e-151
Identities = 231/522 (44%), Positives = 318/522 (60%), Gaps = 33/522 (6%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 48 GKEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQ 101
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGG 218
Query: 2171 EDFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 2227
+DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 219 DDFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFT 269
Query: 2228 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 270 LDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVR 329
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG 2347
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET G
Sbjct: 330 RAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMG 386
Query: 2348 GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPA 2407
G++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 387 GLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPM 446
Query: 2408 PRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKD 2467
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +
Sbjct: 447 VAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAE 505
Query: 2468 ED----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 2505
ED ++++ A LEA ++ AL G+ L+E E+
Sbjct: 506 EDMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
Score = 480 bits (1238), Expect = e-150
Identities = 230/521 (44%), Positives = 317/521 (60%), Gaps = 33/521 (6%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
A A +PKNT+ KRL+GR +D K P+ V+ P V + +
Sbjct: 49 KEALAAAAEDPKNTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQG 102
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
T P E+S+ +L K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R+
Sbjct: 103 TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRL 162
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAA+AYGLDK E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG+
Sbjct: 163 LNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGGD 219
Query: 1599 DFDNRLVSHLAEEFKRKYKK---DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
DFD+ L + K+ +NP R L AA AK L+ S+E+D
Sbjct: 220 DFDHALAKWI-------LKQLGISADLNPEDQRLLLQAARAAKEALT--DAESVEVDFTL 270
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG DF K++R FE L L + TL +AL+DA L I VVLVGGSTR+P V+
Sbjct: 271 DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRR 330
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 1775
+ F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET GG
Sbjct: 331 AVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGG 387
Query: 1776 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAP 1835
++ K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP
Sbjct: 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMV 447
Query: 1836 RGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDE 1895
G +I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +E
Sbjct: 448 AGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEE 506
Query: 1896 D----ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1932
D ++++ A LEA ++ AL G+ L+E E+
Sbjct: 507 DMYARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
Score = 206 bits (527), Expect = 5e-56
Identities = 95/218 (43%), Positives = 139/218 (63%), Gaps = 12/218 (5%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMS 1257
F G+ I+PD+ VA GAA+QA +L+G++ D+LL+DVTPLSLGIET GG++
Sbjct: 334 ELF-GQEPLTDIDPDQVVALGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGGLVE 390
Query: 1258 KLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGV 1317
K+I RNT IP + Q FTTY D Q A+ I V +GER + +D L F+L GIPP G
Sbjct: 391 KIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGA 450
Query: 1318 PKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED-- 1375
+I VTF +DA+G+L V+A++ S+G Q+I +K G LS EEI+RM+ D+ ++ +ED
Sbjct: 451 ARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMY 509
Query: 1376 --ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEK 1411
++++ A LEA ++ AL G+ L+E E+
Sbjct: 510 ARALAEQKVEAERILEA----LQAALAADGDLLSEDER 543
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 452 bits (1164), Expect = e-143
Identities = 183/338 (54%), Positives = 230/338 (68%), Gaps = 6/338 (1%)
Query: 39 SLTNPLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKP 98
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P
Sbjct: 38 YFDGDGEVLVGEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAP 93
Query: 99 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 158
I V + K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A
Sbjct: 94 IIPVPVELGGKKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEA 153
Query: 159 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 218
IAGLNV+R++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV
Sbjct: 154 AEIAGLNVVRLINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVL 212
Query: 219 STAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEA 278
+T GD HLGG+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA
Sbjct: 213 ATGGDNHLGGDDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEA 272
Query: 279 SIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS 338
+I + L G D +++R FEEL L T+ VE+ L DA L I V+LVGGS
Sbjct: 273 TITLPGLGSGGDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGS 332
Query: 339 TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+RIP V+ LL+ F GK SI+PDEAVA GAA+ AA
Sbjct: 333 SRIPLVRELLEELF-GKKPLRSIDPDEAVALGAAIYAA 369
Score = 451 bits (1163), Expect = e-143
Identities = 183/328 (55%), Positives = 230/328 (70%), Gaps = 6/328 (1%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V +
Sbjct: 48 GEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGG 103
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R
Sbjct: 104 KKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVR 163
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG
Sbjct: 164 LINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGG 222
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 223 DDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSG 282
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL
Sbjct: 283 GDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELL 342
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+ F GK SI+PDEAVA GAA+ AA
Sbjct: 343 EELF-GKKPLRSIDPDEAVALGAAIYAA 369
Score = 451 bits (1163), Expect = e-143
Identities = 183/328 (55%), Positives = 230/328 (70%), Gaps = 6/328 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V +
Sbjct: 48 GEAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGG 103
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R
Sbjct: 104 KKYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVR 163
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG
Sbjct: 164 LINEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGG 222
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
+DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 223 DDFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSG 282
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL
Sbjct: 283 GDLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELL 342
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+ F GK SI+PDEAVA GAA+ AA
Sbjct: 343 EELF-GKKPLRSIDPDEAVALGAAIYAA 369
Score = 448 bits (1156), Expect = e-142
Identities = 182/327 (55%), Positives = 229/327 (70%), Gaps = 6/327 (1%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
+AAK Q NP+NTV D KRLIGRKFDDP +Q K + D P I V + K
Sbjct: 49 EAAKRQALDNPENTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGK 104
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
++PEE+S+++L K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R+
Sbjct: 105 KYSPEEVSALILKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRL 164
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG+
Sbjct: 165 INEPTAAALAYGLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGGD 223
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
DFDN L +LAE+FK K D+ ++PRALRRL+ AAE+AK LSSS EA+I + L G
Sbjct: 224 DFDNALADYLAEKFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLGSGG 283
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
D +++R FEEL L T+ VE+ L DA L I V+LVGGS+RIP V+ LL+
Sbjct: 284 DLEVELTREEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLE 343
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAA 1745
F GK SI+PDEAVA GAA+ AA
Sbjct: 344 ELF-GKKPLRSIDPDEAVALGAAIYAA 369
Score = 40.3 bits (95), Expect = 0.011
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAA 1224
GK SI+PDEAVA GAA+ AA
Sbjct: 345 LFGKKPLRSIDPDEAVALGAAIYAA 369
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 286 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 342
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 343 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 859 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 449 bits (1156), Expect = e-142
Identities = 182/336 (54%), Positives = 234/336 (69%), Gaps = 16/336 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE
Sbjct: 51 GQPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNG 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K + P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+R
Sbjct: 107 KDYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG
Sbjct: 167 IINEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGG 223
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
+DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 224 DDFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITAD 283
Query: 2228 YDG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 284 ATGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIP 341
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 342 AVQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 446 bits (1150), Expect = e-141
Identities = 181/335 (54%), Positives = 233/335 (69%), Gaps = 16/335 (4%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERK 1478
AK Q NP+NT+F KR +GRKFD+ + ++ + P+ VV +VE K
Sbjct: 52 QPAKRQAVTNPENTIFSIKRFMGRKFDEVEEERKV---PYKVVV-DEGGNYKVEIDSNGK 107
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
+ P+EIS+M+L K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+RI
Sbjct: 108 DYTPQEISAMILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRI 167
Query: 1539 VNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+NEPTAAALAYGLDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG+
Sbjct: 168 INEPTAAALAYGLDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGD 224
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALY 1655
DFD R++ L EEFK++ D+ + AL+RL+ AAE+AK LSS TE I I A
Sbjct: 225 DFDQRIIDWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADA 284
Query: 1656 DG---IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
G ++ ++RA+FEEL DL T++PV++AL+DAKL S I +V+LVGGSTRIP
Sbjct: 285 TGPKHLEM--TLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPA 342
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 343 VQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
Score = 46.1 bits (110), Expect = 2e-04
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAIL 1226
GK N +NPDE VA GAA+Q +L
Sbjct: 350 LFGKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 285
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 286 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 858
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 859 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 420 bits (1082), Expect = e-132
Identities = 184/334 (55%), Positives = 242/334 (72%), Gaps = 11/334 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G
Sbjct: 51 GMPAKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG-- 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R
Sbjct: 108 KKYSPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
++NEPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGG
Sbjct: 168 VINEPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDAL 2227
EDFDN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A
Sbjct: 225 EDFDNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITAD 284
Query: 2228 YDG-IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
G K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKV
Sbjct: 285 ASGPKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKV 344
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
Q ++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 345 QETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 419 bits (1079), Expect = e-132
Identities = 183/331 (55%), Positives = 241/331 (72%), Gaps = 11/331 (3%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTF 1480
AK Q NP+NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G K +
Sbjct: 54 AKRQAVTNPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG--KKY 110
Query: 1481 APEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN 1540
+P +I + VL KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R++N
Sbjct: 111 SPSQIGAFVLMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVIN 170
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 1600
EPTAAALAYGLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGGEDF
Sbjct: 171 EPTAAALAYGLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGGEDF 227
Query: 1601 DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE---IDALYDG 1657
DN L+ HL +EFK++ D++ + AL+RLR AAE+AK LSSS + I I A G
Sbjct: 228 DNALLRHLVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASG 287
Query: 1658 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 1716
K++RA+FE L DL + T++P +KAL+DA + KS I +V+LVGG TR+PKVQ
Sbjct: 288 PKHLNMKLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQET 347
Query: 1717 LQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
++ F GK + +NPDEAVA GAA+Q +L
Sbjct: 348 VKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
Score = 38.5 bits (90), Expect = 0.047
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 1191 MPRGGPT--NFFCGKSLNLSINPDEAVAYGAAVQAAIL 1226
MP+ T F GK + +NPDEAVA GAA+Q +L
Sbjct: 341 MPKVQETVKEIF-GKEPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 378
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 742 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 801
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 802 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 861
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 862 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 921
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 922 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 951
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 387 bits (996), Expect = e-121
Identities = 173/330 (52%), Positives = 240/330 (72%), Gaps = 6/330 (1%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G+AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G
Sbjct: 50 GEAAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG-- 106
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K ++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+R
Sbjct: 107 KKYSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLR 166
Query: 2111 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 2170
I+NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGG
Sbjct: 167 IINEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGG 224
Query: 2171 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 2230
EDFDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 225 EDFDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGP 284
Query: 2231 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 2290
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++
Sbjct: 285 KHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVV 344
Query: 2291 QNFFCGKSLNLSINPDEAVAYGAAVQAAIL 2320
Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 345 QEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 385 bits (991), Expect = e-120
Identities = 172/328 (52%), Positives = 238/328 (72%), Gaps = 6/328 (1%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK Q A++P+NT F KRLIGR+F D ++Q+ MK + +V + G K
Sbjct: 52 AAKRQEALHPENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG--KK 108
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
++P +I+S VL K+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+RI+
Sbjct: 109 YSPSQIASFVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRII 168
Query: 1540 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGED 1599
NEPTAAALAYG+DK K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGGED
Sbjct: 169 NEPTAAALAYGIDKR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGGED 226
Query: 1600 FDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGID 1659
FDN +V ++ +EFKRKYK D++ N +A++R++ AAE+AK LSSS E+ IE+ L
Sbjct: 227 FDNAIVQYIIKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLDGPKH 286
Query: 1660 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQN 1719
I+R FE+L + + T+ P ++ L+DA L K I +V+LVGG TR+P +Q+++Q
Sbjct: 287 LRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQE 346
Query: 1720 FFCGKSLNLSINPDEAVAYGAAVQAAIL 1747
F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 347 IF-GKKPSKSVNPDEAVALGAAIQGSIL 373
Score = 42.1 bits (99), Expect = 0.003
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 28/163 (17%)
Query: 1081 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCR 1140
L E+ D I +Y ++ ++K +I N +A + +K+A + A +L+ SE+S
Sbjct: 222 LGGEDFDNAI---VQYIIKEFKRKYKIDLTRNKKA-IQRIKEAAEKAKIELSSSEESV-- 275
Query: 1141 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCM-----PLMSKMHGG------------A 1183
L +LD + + +QL+KS P +
Sbjct: 276 ----IELPYLDGPKHLRITITRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILV 331
Query: 1184 GGASAGDMPRGGPTNFFCGKSLNLSINPDEAVAYGAAVQAAIL 1226
GG + + F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 332 GGMTRMPYIQNVVQEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 386 bits (994), Expect = e-120
Identities = 170/338 (50%), Positives = 222/338 (65%), Gaps = 7/338 (2%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFK 105
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V +
Sbjct: 46 LIGEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYL 105
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 165
GE K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN
Sbjct: 106 GEEKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLN 165
Query: 166 VMRIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA
Sbjct: 166 CLRLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTA 224
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIE 281
D +LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA +
Sbjct: 225 FDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLN 284
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRI
Sbjct: 285 IECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRI 344
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 345 PAVKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
Score = 385 bits (992), Expect = e-120
Identities = 170/336 (50%), Positives = 222/336 (66%), Gaps = 7/336 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFKGE 680
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V + GE
Sbjct: 48 GEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGE 107
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +
Sbjct: 108 EKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCL 167
Query: 741 RIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 796
R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA D
Sbjct: 168 RLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFD 226
Query: 797 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 856
+LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA + I+
Sbjct: 227 RNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIE 286
Query: 857 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 916
L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRIP
Sbjct: 287 CLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPA 346
Query: 917 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 347 VKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
Score = 385 bits (992), Expect = e-120
Identities = 170/336 (50%), Positives = 222/336 (66%), Gaps = 7/336 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKPKIQVEFKGE 2049
G+AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K I+V + GE
Sbjct: 48 GEAAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGE 107
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +
Sbjct: 108 EKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCL 167
Query: 2110 RIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 2165
R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L +V STA D
Sbjct: 168 RLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFD 226
Query: 2166 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 2225
+LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS++TEA + I+
Sbjct: 227 RNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIE 286
Query: 2226 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 2285
L + D KI R FEELC+ L +P+EKAL +A L K IH V +VGGSTRIP
Sbjct: 287 CLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPA 346
Query: 2286 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 347 VKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
Score = 383 bits (987), Expect = e-119
Identities = 173/345 (50%), Positives = 224/345 (64%), Gaps = 9/345 (2%)
Query: 1409 SEKSRCREECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPF-TVVNDCSKP 1467
EK R E AAKNQ N KNTV + KRLIGRKFDDP++Q+++K PF V K
Sbjct: 41 GEKQRLIGE--AAKNQAISNFKNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKV 98
Query: 1468 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 1527
I+V + GE K F+PE++ +M+LTK+KE AE L V D VI+VP+YF DAQR+A DA
Sbjct: 99 GIKVNYLGEEKVFSPEQVLAMLLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDA 158
Query: 1528 GAIAGLNVMRIVNEPTAAALAYGLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGAL 1583
IAGLN +R++NE TA ALAYG+ K E RNV D+G + VSI++ ++G L
Sbjct: 159 AQIAGLNCLRLMNETTATALAYGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL 218
Query: 1584 FEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS 1643
+V STA D +LGG DFD L H A+EFK KYK D+ NP+A RL A E+ K+ LS+
Sbjct: 219 -KVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSA 277
Query: 1644 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 1703
+TEA + I+ L + D KI R FEELC+ L +P+EKAL +A L K IH V +
Sbjct: 278 NTEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEI 337
Query: 1704 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
VGGSTRIP V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 338 VGGSTRIPAVKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
Score = 37.9 bits (89), Expect = 0.064
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 1197 TNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 352 AKVF-GKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 103 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 162
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 163 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 281
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 676 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 735
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 736 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 854
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 855 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 1472 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 1531
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 1532 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 1591
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 1592 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 1650
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 1651 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 1710
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 1711 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 336 bits (863), Expect = e-104
Identities = 136/275 (49%), Positives = 183/275 (66%), Gaps = 10/275 (3%)
Query: 2045 EFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 2104
+++ ++ F EE+SS+VL +KE AEAYLG V +AVI+VPAYFND QR+ATK AG +A
Sbjct: 74 KYRLGKREFRAEELSSLVLRSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELA 133
Query: 2105 GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
GL V R++NEPTAAALAYGL E L+FDLGGGTFDVS+L + +G + EVR++AG
Sbjct: 134 GLKVERLINEPTAAALAYGLHDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAG 191
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV-NPRALRRLRTAAERAKRTLSSSTEASIE 2223
D +LGGEDF L E F +K+ D +P L RL AAERAKR LS EA +
Sbjct: 192 DNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS 247
Query: 2224 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
+ +G + ++R FEE+C L QP+E+AL+DA+L S I +++LVGG+TR+
Sbjct: 248 VR--IEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRM 305
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
P V+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 306 PVVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
Score = 41.0 bits (97), Expect = 0.006
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 33/126 (26%)
Query: 1129 NKLTESEKSRCREECDATLKWLDNN-------TLADKE-EYQDKLQQLQKSCMPLMSKMH 1180
KL SE +R + + L + + +E EY ++ ++ C PL+ ++
Sbjct: 217 EKLDPSELARLLRAAERAKRALSDQEEAEMSVRIEGEELEYTLTREEFEEICQPLLERLR 276
Query: 1181 GG--------------------AGGASAGDMP--RGGPTNFFCGKSLNLSINPDEAVAYG 1218
GGA+ MP R + F G+ + +NPDE VA G
Sbjct: 277 QPIERALRDARLKPSDIDEIILVGGATR--MPVVRKLVSRLF-GRFPLVHLNPDEVVALG 333
Query: 1219 AAVQAA 1224
AA+QA
Sbjct: 334 AAIQAG 339
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 333 bits (856), Expect = e-102
Identities = 148/330 (44%), Positives = 194/330 (58%), Gaps = 20/330 (6%)
Query: 619 PRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK 678
G A +PKNT+ KRL+G+ +D I++ + P + + F
Sbjct: 45 ISVGHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFH 98
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
++ T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLN
Sbjct: 99 TQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLN 158
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+R++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+
Sbjct: 159 VLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSA 215
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 858
LGG+DFD L L +KY ++ L A +AK LS + E +E
Sbjct: 216 LGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE---- 265
Query: 859 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 918
G DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ
Sbjct: 266 VRGQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQ 325
Query: 919 SLLQNFFCGKSLNLSINPDEAVAYGAAVQA 948
+ FF K L INPDE VA GAA+QA
Sbjct: 326 EAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
Score = 333 bits (856), Expect = e-102
Identities = 148/330 (44%), Positives = 194/330 (58%), Gaps = 20/330 (6%)
Query: 1988 PRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFK 2047
G A +PKNT+ KRL+G+ +D I++ + P + + F
Sbjct: 45 ISVGHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFH 98
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
++ T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLN
Sbjct: 99 TQQGTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLN 158
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+R++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+
Sbjct: 159 VLRLLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSA 215
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 2227
LGG+DFD L L +KY ++ L A +AK LS + E +E
Sbjct: 216 LGGDDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE---- 265
Query: 2228 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 2287
G DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ
Sbjct: 266 VRGQDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQ 325
Query: 2288 SLLQNFFCGKSLNLSINPDEAVAYGAAVQA 2317
+ FF K L INPDE VA GAA+QA
Sbjct: 326 EAVSKFFGQKPLC-DINPDEVVAIGAALQA 354
Score = 333 bits (855), Expect = e-102
Identities = 148/327 (45%), Positives = 194/327 (59%), Gaps = 20/327 (6%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G A +PKNT+ KRL+G+ +D I++ + P + + F ++
Sbjct: 48 GHDALKLAISDPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFHTQQ 101
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSALGG 218
Query: 229 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 288
+DFD L L +KY ++ L A +AK LS + E +E G
Sbjct: 219 DDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE----VRG 268
Query: 289 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 348
DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ +
Sbjct: 269 QDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAV 328
Query: 349 QNFFCGKSLNLSINPDEAVAYGAAVQA 375
FF K L INPDE VA GAA+QA
Sbjct: 329 SKFFGQKPLC-DINPDEVVAIGAALQA 354
Score = 331 bits (852), Expect = e-102
Identities = 149/327 (45%), Positives = 197/327 (60%), Gaps = 21/327 (6%)
Query: 1418 CDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 1477
DA K ++ +PKNT+ KRL+G+ +D I++ + P + + F ++
Sbjct: 49 HDALKLAIS-DPKNTISSVKRLMGKSIED--IKKSFPYLPILEGKN----GGIILFHTQQ 101
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
T P E+S+ +L +KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R
Sbjct: 102 GTVTPVEVSAEILKALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLR 161
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
++NEPTAAALAYGLDK K E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG
Sbjct: 162 LLNEPTAAALAYGLDK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSALGG 218
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG 1657
+DFD L L +KY ++ L A +AK LS + E +E G
Sbjct: 219 DDFDQLLAELL----LKKYGLKSLISDEDQAELLLIARKAKEALSGAEE--VE----VRG 268
Query: 1658 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL 1717
DF I+R FE+L L + TL ++AL+DA L I V+LVGGSTRIP VQ +
Sbjct: 269 QDFKCTITREEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAV 328
Query: 1718 QNFFCGKSLNLSINPDEAVAYGAAVQA 1744
FF K L INPDE VA GAA+QA
Sbjct: 329 SKFFGQKPLC-DINPDEVVAIGAALQA 354
Score = 40.7 bits (96), Expect = 0.010
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQA 1223
FF K L INPDE VA GAA+QA
Sbjct: 330 KFFGQKPLC-DINPDEVVAIGAALQA 354
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 108
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 169 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 227
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 228 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 287
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 288 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 347
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 348 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 681
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 682 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 741
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 742 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 800
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 801 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 860
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 861 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 920
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 921 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
Score = 331 bits (850), Expect = e-101
Identities = 142/329 (43%), Positives = 216/329 (65%), Gaps = 2/329 (0%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGER 2050
G AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + +
Sbjct: 48 GLAAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKT 107
Query: 2051 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 2110
K +P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+R
Sbjct: 108 KHVSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLR 167
Query: 2111 IVNEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG 2169
I++EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LG
Sbjct: 168 IIHEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLG 226
Query: 2170 GEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD 2229
GE F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+
Sbjct: 227 GESFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYE 286
Query: 2230 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL 2289
GIDF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L
Sbjct: 287 GIDFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQL 346
Query: 2290 LQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
+++ F + SI+PDE +A GAA QA
Sbjct: 347 IKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
Score = 330 bits (848), Expect = e-101
Identities = 141/327 (43%), Positives = 215/327 (65%), Gaps = 2/327 (0%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKT 1479
AAK N NT+ K+++GR + DP Q++ ++ +PK ++ + + K
Sbjct: 50 AAKQGRIRNAANTIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKH 109
Query: 1480 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV 1539
+P+E++ ++ KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+RI+
Sbjct: 110 VSPKEVAKLIFKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRII 169
Query: 1540 NEPTAAALAYGLDKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 1598
+EP+AAALAYG+ ++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LGGE
Sbjct: 170 HEPSAAALAYGIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLGGE 228
Query: 1599 DFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGI 1658
F L +LA EFKRK+K+D+ N RA+ +L AAE AK+ LS+ A+ +++LY+GI
Sbjct: 229 SFTETLSQYLANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGI 288
Query: 1659 DFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ 1718
DF +SRARFE LCS LF L+P+EK L+ A L K+ I+ VVL GGS+RIPK+Q L++
Sbjct: 289 DFQCSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIK 348
Query: 1719 NFFCGKSLNLSINPDEAVAYGAAVQAA 1745
+ F + SI+PDE +A GAA QA
Sbjct: 349 DLFPSVEVLNSISPDEVIAIGAAKQAG 375
Score = 35.1 bits (81), Expect = 0.51
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 1198 NFFCGKSLNLSINPDEAVAYGAAVQAA 1224
+ F + SI+PDE +A GAA QA
Sbjct: 349 DLFPSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 317 bits (813), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 68 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 123
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 124 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 183
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 244 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 303
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 304 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 363
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 364 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPCKQT 423
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 424 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 483
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 484 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 543
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 544 VFNVKQALDNAGNKLTESEKS 564
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 641 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 696
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 697 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 756
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 757 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 816
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 817 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 876
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 877 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 936
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 937 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 996
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 997 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1056
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 1057 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 1116
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 1117 VFNVKQALDNAGNKLTESEKS 1137
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 1437 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 1492
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 1493 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 1552
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 1553 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 1612
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 1613 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 1672
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 1673 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 1732
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 1733 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 1792
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 1793 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 1852
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 1853 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 1912
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 1913 VFNVKQALDNAGNKLTESEKS 1933
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
Score = 316 bits (812), Expect = 1e-93
Identities = 187/501 (37%), Positives = 273/501 (54%), Gaps = 42/501 (8%)
Query: 2010 KRLIGRKFDD----PKIQQDMKHWPFTVVNDCSKPKIQVEFKGERKTFAPEEISSMVLTK 2065
KRL G+ + P + +K + + + S+ K+ K EI++ +
Sbjct: 76 KRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAAEIFIY 128
Query: 2066 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 2125
+K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA AYGL+
Sbjct: 129 LKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLN 188
Query: 2126 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 2185
KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +L +F
Sbjct: 189 KNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQYLCNKF 245
Query: 2186 KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEEL 2245
D+ + L+ A++AK TL+ + S D + I++ E+L
Sbjct: 246 ------DLPNSIDTLQ----LAKKAKETLTY--KDSFNNDNIS--------INKQTLEQL 285
Query: 2246 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINP 2305
L T+ ++ L+ A I V+LVGG+TRIP ++ L F L+ I+P
Sbjct: 286 ILPLVERTINIAQECLEQAGNPN--IDGVILVGGATRIPLIKDELYKAFKVDILS-DIDP 342
Query: 2306 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQT 2365
D+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 343 DKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 2366 QTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGI 2425
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 2426 LNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAY 2485
L+V+A + S S I +K + G + K EID M+ +A + D + A EA
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEAL 517
Query: 2486 VFNVKQALDNAGNKLTESEKS 2506
+FN+++A+ L+ESE S
Sbjct: 518 IFNIERAIAELTTLLSESEIS 538
Score = 165 bits (419), Expect = 4e-42
Identities = 83/204 (40%), Positives = 120/204 (58%), Gaps = 5/204 (2%)
Query: 1209 INPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIERNTRIPC 1268
I+PD+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 340 IDPDKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPI 395
Query: 1269 KQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 1328
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA
Sbjct: 396 SVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDA 455
Query: 1329 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKERISARNNL 1388
+GIL+V+A + S S I +K + G + K EID M+ +A + D + A
Sbjct: 456 DGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEA 514
Query: 1389 EAYVFNVKQALDNAGNKLTESEKS 1412
EA +FN+++A+ L+ESE S
Sbjct: 515 EALIFNIERAIAELTTLLSESEIS 538
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 107
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 167 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 215
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 216 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 273
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 274 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 333
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 334 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 680
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 739
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 740 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 788
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 789 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 846
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 847 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 906
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 907 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 305 bits (784), Expect = 1e-92
Identities = 138/343 (40%), Positives = 192/343 (55%), Gaps = 16/343 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGE 2049
G A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 47 GSDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG 106
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 2108
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV
Sbjct: 107 -EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNV 165
Query: 2109 MRIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-F 2157
+ +VN+ TAAAL Y LD+ + + VL +D+G G+ +++ +
Sbjct: 166 LALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQI 225
Query: 2158 EVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLS 2215
EV D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS
Sbjct: 226 EVLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLS 285
Query: 2216 SSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVV 2275
+++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V
Sbjct: 286 ANSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 2276 LVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
L+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 303 bits (778), Expect = 1e-91
Identities = 137/342 (40%), Positives = 191/342 (55%), Gaps = 16/342 (4%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDCSKPKIQVEFKGER 1477
A + A P+ K L+G+ DDP + P V D S+ + +
Sbjct: 48 SDASSLAARFPQQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG- 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 1536
+ ++ EE+ +M+L K+ AE + V+D VITVP YF AQRQA DA +AGLNV+
Sbjct: 107 EEYSVEELVAMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVL 166
Query: 1537 RIVNEPTAAALAYGLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-FE 1585
+VN+ TAAAL Y LD+ + + VL +D+G G+ +++ + E
Sbjct: 167 ALVNDGTAAALNYALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIE 226
Query: 1586 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSV--NPRALRRLRTAAERAKRTLSS 1643
V D LGG +FD RL HLA+EF+ K+K + V NPRA+ +L A RAK LS+
Sbjct: 227 VLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSA 286
Query: 1644 STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL 1703
++EA + I++LYD IDF TKI+RA FEELC+DLF + P++KAL+ A L I V L
Sbjct: 287 NSEAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVEL 346
Query: 1704 VGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
+GG+TR+PKVQ L K L +N DEA A GAA AA
Sbjct: 347 IGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 302 bits (774), Expect = 7e-91
Identities = 145/352 (41%), Positives = 207/352 (58%), Gaps = 17/352 (4%)
Query: 47 FTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF-- 104
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 68 LVGYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSV 125
Query: 105 -KGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAG 163
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AG
Sbjct: 126 LTNETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAG 185
Query: 164 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 223
L V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 186 LEVLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGN 243
Query: 224 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI- 282
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 244 NRLGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLN 302
Query: 283 ----DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS 338
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGS
Sbjct: 303 LTLLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGS 362
Query: 339 TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 387
TRIP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 363 TRIPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
Score = 300 bits (770), Expect = 2e-90
Identities = 145/350 (41%), Positives = 207/350 (59%), Gaps = 17/350 (4%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---K 678
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 70 GYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLT 127
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 738
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL
Sbjct: 128 NETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLE 187
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 188 VLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNR 245
Query: 799 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI--- 855
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 246 LGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLT 304
Query: 856 --DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTR
Sbjct: 305 LLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTR 364
Query: 914 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 960
IP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 365 IPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
Score = 300 bits (770), Expect = 2e-90
Identities = 145/350 (41%), Positives = 207/350 (59%), Gaps = 17/350 (4%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---K 2047
G A Q NP+NT++DAKR IG+ F +++ + + F V + F
Sbjct: 70 GYKAVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLT 127
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLN 2107
E KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL
Sbjct: 128 NETKTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLE 187
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
V+R++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+
Sbjct: 188 VLRVINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNR 245
Query: 2168 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI--- 2224
LGG+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 246 LGGQDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLT 304
Query: 2225 --DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTR
Sbjct: 305 LLSEGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTR 364
Query: 2283 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 2329
IP+++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 365 IPRIRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
Score = 299 bits (767), Expect = 6e-90
Identities = 144/347 (41%), Positives = 206/347 (59%), Gaps = 17/347 (4%)
Query: 1421 AKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEF---KGER 1477
A Q NP+NT++DAKR IG+ F +++ + + F V + F E
Sbjct: 73 AVEQAEHNPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKIN--SRNGAFFFSVLTNET 130
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
KT PEEI S ++ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL V+R
Sbjct: 131 KTVTPEEIGSRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLR 190
Query: 1538 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 1597
++NEPTAAALAYGL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+ LGG
Sbjct: 191 VINEPTAAALAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNRLGG 248
Query: 1598 EDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI-----D 1652
+DF+ RL+ +L ++ KY K N ++RLR A E AK L+ +I +
Sbjct: 249 QDFNQRLLQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLS 307
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
+ F +++R FE L DLF+ L P+E L + LDK + ++VLVGGSTRIP+
Sbjct: 308 EGESIVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPR 367
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 1756
++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 368 IRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
Score = 39.4 bits (92), Expect = 0.024
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 1235
F GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 375 FFGKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 271 bits (695), Expect = 7e-81
Identities = 128/340 (37%), Positives = 196/340 (57%), Gaps = 8/340 (2%)
Query: 43 PLSYFTGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQ 101
P + + G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +
Sbjct: 40 PKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAE 99
Query: 102 VEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 161
V F GE+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA I
Sbjct: 100 VRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARI 159
Query: 162 AGLNVMRIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFE 216
AGLN +RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +
Sbjct: 160 AGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-K 218
Query: 217 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 276
V TA D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T
Sbjct: 219 VLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT 278
Query: 277 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 336
A ++++ + +D +++SR EEL L +PV KAL AKL + V ++G
Sbjct: 279 NAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIG 338
Query: 337 GSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 376
G+TRIP ++ + F GK L+ ++N DEA+A GAA A
Sbjct: 339 GTTRIPTLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
Score = 270 bits (691), Expect = 2e-80
Identities = 127/334 (38%), Positives = 193/334 (57%), Gaps = 8/334 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGE 680
G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE
Sbjct: 46 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 105
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 106 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 165
Query: 741 RIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA
Sbjct: 166 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTAC 224
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 855
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 225 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 284
Query: 856 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 915
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 285 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 344
Query: 916 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 949
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 345 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
Score = 270 bits (691), Expect = 2e-80
Identities = 127/334 (38%), Positives = 193/334 (57%), Gaps = 8/334 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGE 2049
G+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE
Sbjct: 46 GETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGE 105
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+ F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +
Sbjct: 106 KHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPV 165
Query: 2110 RIVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
RIVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA
Sbjct: 166 RIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTAC 224
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEI 2224
D H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A +
Sbjct: 225 DKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSV 284
Query: 2225 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 2284
+++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 285 ESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIP 344
Query: 2285 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 2318
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 345 TLKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
Score = 268 bits (685), Expect = 2e-79
Identities = 126/333 (37%), Positives = 192/333 (57%), Gaps = 8/333 (2%)
Query: 1419 DAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDCSKPKIQVEFKGER 1477
+ KN+ N KNTV + KR+IG + P +Q+ KH V D K +V F GE+
Sbjct: 47 ETGKNKQTSNIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEK 106
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
F+ ++++M + K+K+T + ++ D I VP ++ + QR DA IAGLN +R
Sbjct: 107 HVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVR 166
Query: 1538 IVNEPTAAALAYGL--DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
IVN+ TAA ++YG+ +GE R V D+G ++ SI++ +G L +V TA D
Sbjct: 167 IVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTACD 225
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 1652
H GG DFD + H A+EFK KYK D+ NP+A R+ TAAE+ K+ LS++T A ++
Sbjct: 226 KHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE 285
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
++ + +D +++SR EEL L +PV KAL AKL + V ++GG+TRIP
Sbjct: 286 SVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPT 345
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 1745
++ + F GK L+ ++N DEA+A GAA A
Sbjct: 346 LKQSISEAF-GKPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 265 bits (679), Expect = 2e-78
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 13/347 (3%)
Query: 615 AGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPK 672
G+ G+ AK Q+ N KNT+ + + L+G+ F + + P V++ +
Sbjct: 41 HGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQ 100
Query: 673 IQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 732
+ E + E++ L ++KE AE +LG V AV++VP +F+D Q +A A
Sbjct: 101 EKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAA 160
Query: 733 AIAGLNVMRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFE 789
AGL V++++ EP AA LAY + +RNV++ D GG DVS++++ G L+
Sbjct: 161 EAAGLPVLQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYT 219
Query: 790 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 849
+ +TA D LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST
Sbjct: 220 ILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 850 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 909
A+ +++L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 910 GSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 949
G+ PK+ S L F +++ +++P E VA G A+QA+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 265 bits (679), Expect = 2e-78
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 13/347 (3%)
Query: 1984 AGDMPRGGDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPK 2041
G+ G+ AK Q+ N KNT+ + + L+G+ F + + P V++ +
Sbjct: 41 HGEQEYHGNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQ 100
Query: 2042 IQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 2101
+ E + E++ L ++KE AE +LG V AV++VP +F+D Q +A A
Sbjct: 101 EKEEPVPKETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAA 160
Query: 2102 AIAGLNVMRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFE 2158
AGL V++++ EP AA LAY + +RNV++ D GG DVS++++ G L+
Sbjct: 161 EAAGLPVLQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYT 219
Query: 2159 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST 2218
+ +TA D LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST
Sbjct: 220 ILATAHDPGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSAST 279
Query: 2219 EASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG 2278
A+ +++L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVG
Sbjct: 280 SATCSVESLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVG 339
Query: 2279 GSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 2318
G+ PK+ S L F +++ +++P E VA G A+QA+
Sbjct: 340 GTAFTPKLASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 265 bits (678), Expect = 3e-78
Identities = 122/340 (35%), Positives = 191/340 (56%), Gaps = 13/340 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPKIQVEFKG 106
G+ AK Q+ N KNT+ + + L+G+ F + + P V++ + + E
Sbjct: 48 GNQAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVP 107
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
+ E++ L ++KE AE +LG V AV++VP +F+D Q +A A AGL V
Sbjct: 108 KETILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPV 167
Query: 167 MRIVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 223
++++ EP AA LAY + +RNV++ D GG DVS++++ G L+ + +TA D
Sbjct: 168 LQLIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHD 226
Query: 224 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEID 283
LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST A+ ++
Sbjct: 227 PGLGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVE 286
Query: 284 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 343
+L +GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVGG+ PK
Sbjct: 287 SLAEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPK 346
Query: 344 VQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 376
+ S L F +++ +++P E VA G A+QA+
Sbjct: 347 LASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
Score = 263 bits (673), Expect = 1e-77
Identities = 121/338 (35%), Positives = 189/338 (55%), Gaps = 13/338 (3%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDCSKPKIQVEFKGER 1477
AK Q+ N KNT+ + + L+G+ F + + P V++ + + E +
Sbjct: 50 QAKAQLIRNAKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKE 109
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
E++ L ++KE AE +LG V AV++VP +F+D Q +A A AGL V++
Sbjct: 110 TILTVHEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQ 169
Query: 1538 IVNEPTAAALAYGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 1594
++ EP AA LAY + +RNV++ D GG DVS++++ G L+ + +TA D
Sbjct: 170 LIPEPAAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHDPG 228
Query: 1595 LGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDAL 1654
LGG+ D+ LV H A+EF +K K D N RAL +LR +E K+TLS+ST A+ +++L
Sbjct: 229 LGGDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESL 288
Query: 1655 YDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ 1714
+GIDF++ I+R RFE L S +FR V A+ A LD I +V+LVGG+ PK+
Sbjct: 289 AEGIDFHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLA 348
Query: 1715 SLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAA 1745
S L F +++ +++P E VA G A+QA+
Sbjct: 349 SNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 106
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 107 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 167 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 280
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 281 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 340
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 341 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 679
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 680 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 739
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 740 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 853
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 854 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 914 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
Score = 261 bits (668), Expect = 4e-77
Identities = 139/339 (41%), Positives = 205/339 (60%), Gaps = 11/339 (3%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKG 2048
G AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + G
Sbjct: 48 GVAAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMG 106
Query: 2049 ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 2108
E F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN
Sbjct: 107 EEHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNC 166
Query: 2109 MRIVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
+R++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA
Sbjct: 167 LRLMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTA 225
Query: 2164 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASI 2222
D LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ +
Sbjct: 226 FDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPL 285
Query: 2223 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
I+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TR
Sbjct: 286 NIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATR 345
Query: 2283 IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
IP V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 346 IPAVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
Score = 259 bits (663), Expect = 2e-76
Identities = 138/337 (40%), Positives = 204/337 (60%), Gaps = 11/337 (3%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVV--NDCSKPKIQVEFKGER 1477
AAKNQ + NTV + KR GR F+DP +Q++ ++ + +V + ++V + GE
Sbjct: 50 AAKNQQITHANNTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKN-GGVGVKVMYMGEE 108
Query: 1478 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 1537
F+ E+I++M+LTK+KETAE L V D VI+VP++F DA+R++ DA I GLN +R
Sbjct: 109 HLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLR 168
Query: 1538 IVNEPTAAALAYGLDK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGD 1592
++N+ TA AL YG+ K +L R V+ D+G F VS + ++G L +V TA D
Sbjct: 169 LMNDMTAVALNYGIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTAFD 227
Query: 1593 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEI 1651
LGG++FD +LV H EFK KYK D RAL RL E+ K+ +SS ST+ + I
Sbjct: 228 PFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNI 287
Query: 1652 DALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 1711
+ + D K++R++FEELC+DL + P+ L+ L + V +VGG+TRIP
Sbjct: 288 ECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIP 347
Query: 1712 KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 348 AVKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
Score = 36.5 bits (84), Expect = 0.16
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 1163 DKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTNF---------FCGKSLNLSINPDE 1213
D LQ+++ L+ + H SA ++ GG T F GK ++ ++N DE
Sbjct: 311 DLLQRIEVPLYSLLEQTHLKVEDVSAVEIV-GGATRIPAVKERIAKFFGKDVSTTLNADE 369
Query: 1214 AVAYGAAVQAAILS 1227
AVA G A+Q AILS
Sbjct: 370 AVARGCALQCAILS 383
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 107
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 168 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 281
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 622 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 680
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 681 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 740
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 741 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 795
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 796 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 854
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 855 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 914
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
Score = 255 bits (653), Expect = 4e-75
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 9/338 (2%)
Query: 1991 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 2049
G AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E
Sbjct: 48 GAAAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEE 107
Query: 2050 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 2109
+ F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +
Sbjct: 108 ERNFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCL 167
Query: 2110 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 2164
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAF 226
Query: 2165 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 2223
DT LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLN 286
Query: 2224 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 2283
I+ + ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRI
Sbjct: 287 IECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRI 346
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
P V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
Score = 254 bits (649), Expect = 1e-74
Identities = 138/336 (41%), Positives = 204/336 (60%), Gaps = 9/336 (2%)
Query: 1420 AAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGERK 1478
AAK+QV N KNTV KR GR F DP +Q + + +V I+V + E +
Sbjct: 50 AAKSQVISNAKNTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEER 109
Query: 1479 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 1538
F E++++M+LTK+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +R+
Sbjct: 110 NFTTEQVTAMLLTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRL 169
Query: 1539 VNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 1593
+NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +TA DT
Sbjct: 170 MNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAFDT 228
Query: 1594 HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIEID 1652
LGG FD LV++ EEF +KYK D+ RAL RL E+ K+ +S+ +++ + I+
Sbjct: 229 TLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIE 288
Query: 1653 ALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 1712
+ ID ++R +F E+C DL P+ L+ AKL K I+ V +VGG+TRIP
Sbjct: 289 CFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPA 348
Query: 1713 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 349 VKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
Score = 35.4 bits (81), Expect = 0.37
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 1200 FCGKSLNLSINPDEAVAYGAAVQAAILS 1227
F GK ++ ++N DEAVA G A+Q AILS
Sbjct: 356 FFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent "client"
proteins towards degradation. Like HSP70 chaperones,
HSP105/110s have an N-terminal nucleotide-binding domain
(NBD) and a C-terminal substrate-binding domain (SBD).
For HSP70 chaperones, the nucleotide sits in a deep cleft
formed between the two lobes of the NBD. The two
subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is also regulated by J-domain
proteins.
Length = 383
Score = 246 bits (630), Expect = 5e-72
Identities = 130/344 (37%), Positives = 212/344 (61%), Gaps = 9/344 (2%)
Query: 1412 SRCREECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQ 1470
SR R +AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ + ++
Sbjct: 42 SRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVK 101
Query: 1471 VEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 1530
V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A +
Sbjct: 102 VRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQV 161
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFE 1585
AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +
Sbjct: 162 AGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-K 220
Query: 1586 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-S 1644
V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S+ +
Sbjct: 221 VLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANA 280
Query: 1645 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 1704
++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ + +V
Sbjct: 281 SDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIV 340
Query: 1705 GGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1748
GG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 341 GGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
Score = 246 bits (630), Expect = 6e-72
Identities = 131/347 (37%), Positives = 213/347 (61%), Gaps = 10/347 (2%)
Query: 614 SAGDMPRG-GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKP 671
S G R G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ +
Sbjct: 39 SLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSV 98
Query: 672 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 731
++V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A
Sbjct: 99 GVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAA 158
Query: 732 GAIAGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGA 786
+AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G
Sbjct: 159 AQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGK 218
Query: 787 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 846
L +V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S
Sbjct: 219 L-KVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMS 277
Query: 847 S-STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDV 905
+ +++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ +
Sbjct: 278 ANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSI 337
Query: 906 VLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 952
+VGG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 338 EIVGGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
Score = 246 bits (630), Expect = 6e-72
Identities = 131/347 (37%), Positives = 213/347 (61%), Gaps = 10/347 (2%)
Query: 1983 SAGDMPRG-GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKP 2040
S G R G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ +
Sbjct: 39 SLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSV 98
Query: 2041 KIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA 2100
++V + E + FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A
Sbjct: 99 GVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAA 158
Query: 2101 GAIAGLNVMRIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGA 2155
+AGLN +R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G
Sbjct: 159 AQVAGLNCLRLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGK 218
Query: 2156 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS 2215
L +V +T D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S
Sbjct: 219 L-KVLATTFDPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMS 277
Query: 2216 S-STEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDV 2274
+ +++ + I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ +
Sbjct: 278 ANASDLPLNIECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSI 337
Query: 2275 VLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 2321
+VGG+TRIP V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 338 EIVGGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
Score = 246 bits (629), Expect = 6e-72
Identities = 128/338 (37%), Positives = 210/338 (62%), Gaps = 9/338 (2%)
Query: 49 GDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DCSKPKIQVEFKGE 107
G+AAK+Q+ N +NT+ K+L GR FDDP +Q + P+ + ++V + E
Sbjct: 48 GNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEE 107
Query: 108 RKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVM 167
+ FA E+++ M+L K+KET+E L V D VI++P++F DA+R++ A +AGLN +
Sbjct: 108 ERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCL 167
Query: 168 RIVNEPTAAALAYGLDKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAG 222
R++NE TA ALAYG+ K + RNV+ D+G + VS+ + ++G L +V +T
Sbjct: 168 RLMNETTAVALAYGIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-KVLATTF 226
Query: 223 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS-STEASIE 281
D +LGG +FD LV + +EFK KYK ++ N RAL RL E+ K+ +S+ +++ +
Sbjct: 227 DPYLGGRNFDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLN 286
Query: 282 IDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI 341
I+ + +D +K++RA+FE+LC+ L P++ ++ A L + I+ + +VGG+TRI
Sbjct: 287 IECFMNDLDVSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRI 346
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 379
P V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 347 PAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
Score = 36.2 bits (83), Expect = 0.26
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 1184 GGASAGDMPRGGPTNFFCGKSLNLSINPDEAVAYGAAVQAAILS 1227
GGA+ + T+FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 341 GGATRIPAVKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 106 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 161
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 162 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 217
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 218 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 250
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 251 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 280
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 281 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 340
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 341 IPKVQSLLQNFF 352
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 679 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 734
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 735 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 790
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 791 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 823
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 824 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 853
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 854 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 913
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 914 IPKVQSLLQNFF 925
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 1475 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 1530
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 1531 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 1586
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 1587 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 1619
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 1620 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 1649
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 1650 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 1709
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 1710 IPKVQSLLQNFF 1721
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
Score = 129 bits (326), Expect = 2e-31
Identities = 84/312 (26%), Positives = 118/312 (37%), Gaps = 72/312 (23%)
Query: 2048 GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI 2103
G R TF E++ + L ++K+ AEA LG + VI P +F QA A
Sbjct: 88 GRRLTF--EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAA 145
Query: 2104 ---AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEV 2159
AG + EP AAAL Y + L E VL+ D+GGGT D S++ +
Sbjct: 146 ARAAGFKDVEFQYEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRAD 203
Query: 2160 RS-----TAGDTHLGGEDFDNRLVSH-LAEEFKRK--YKKD------------------- 2192
R +G +GG DFD RL H + + Y+
Sbjct: 204 RRADILAHSG-VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHK 262
Query: 2193 ------------------MSVNPRALRRLRT------------AAERAKRTLSSSTEASI 2222
+V P L RL T A E AK LSS E I
Sbjct: 263 INFLYTPKTLRELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRI 322
Query: 2223 EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTR 2282
++D + + ++RA FE + V++AL A + AI V L GGS+
Sbjct: 323 DLD--FVEVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSL 380
Query: 2283 IPKVQSLLQNFF 2294
+P V+ F
Sbjct: 381 VPAVRQAFAARF 392
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 121 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 168
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 169 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 219
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 220 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 275
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 276 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 328
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 329 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 372
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 694 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 741
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 742 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 792
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 793 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 848
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 849 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 901
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 902 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 945
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 1490 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 1537
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 1538 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 1588
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 1589 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 1644
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 1645 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 1697
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 1698 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 1741
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
Score = 82.7 bits (205), Expect = 4e-16
Identities = 74/288 (25%), Positives = 113/288 (39%), Gaps = 39/288 (13%)
Query: 2063 LTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAGLNVMR--- 2110
L + E A L + + V+TVPA ++DA +QA ++A AGL R
Sbjct: 116 LRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAGLVSSREGP 175
Query: 2111 ----IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR-S 2161
IV EP AAAL L NLK L+ D GGGT D+++ + ++
Sbjct: 176 DRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSVEPLRLKEL 235
Query: 2162 TAGDTHLGGEDF-DNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRT---LSSS 2217
AG L G F D L E + + S +P L E KR+ +
Sbjct: 236 AAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETIKRSFGGTDND 295
Query: 2218 TEASI-------EIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA 2270
T + + D + KIS + L + + +E+ L+ A+
Sbjct: 296 TNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQLEQAEKGD-K 354
Query: 2271 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSI----NPDEAVAYGAA 2314
+ + LVGG P ++S L+ F S + + +P AV GA
Sbjct: 355 VKYIFLVGGFGESPYLRSRLKERF--SSRGIRVLRPPDPQLAVVRGAV 400
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 198
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 199 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 258
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 259 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 317
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 318 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 367
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 368 AYGAA 372
A GA
Sbjct: 309 AKGAG 313
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 771
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 772 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 831
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 832 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 890
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 891 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 940
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 941 AYGAA 945
A GA
Sbjct: 309 AKGAG 313
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 1567
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 1627
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 1628 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 1686
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 1687 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 1736
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 1737 AYGAA 1741
A GA
Sbjct: 309 AKGAG 313
Score = 68.2 bits (168), Expect = 1e-11
Identities = 67/245 (27%), Positives = 114/245 (46%), Gaps = 37/245 (15%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 2140
VI VP+ + +R+A DA AG + ++ EP AAA+ GLD KG ++ D+G
Sbjct: 94 VICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIG 150
Query: 2141 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 2200
GGT +++++S+ G + +S +GG+DFD ++ ++ +RKY L
Sbjct: 151 GGTTEIAVISL--GGIVVSKS----IRVGGDDFDEAIIRYV----RRKYN---------L 191
Query: 2201 RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQ-PVEK 2259
AE K + S+ E G D T + R E+ S+ R L+ P+++
Sbjct: 192 LIGERTAEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTV--EVTSEEVREALKEPLDE 249
Query: 2260 ALQDAK--LDK------SAIHD--VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 2309
++ K L+K + I D +VL GG + + L+ G + ++ +P V
Sbjct: 250 IVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEET-GLPVRVAEDPLTCV 308
Query: 2310 AYGAA 2314
A GA
Sbjct: 309 AKGAG 313
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 98 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 155
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 156 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 206
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 207 LSIDEG 212
+ +G
Sbjct: 141 VEDGKG 146
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 671 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 728
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 729 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 779
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 780 LSIDEG 785
+ +G
Sbjct: 141 VEDGKG 146
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 1467 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 1524
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 1525 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 1575
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 1576 LSIDEG 1581
+ +G
Sbjct: 141 VEDGKG 146
Score = 55.3 bits (133), Expect = 3e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 2040 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 2097
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 2098 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 2148
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 2149 LSIDEG 2154
+ +G
Sbjct: 141 VEDGKG 146
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 171
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 172 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 224
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 225 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 250
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 693 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 744
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 745 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 797
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 798 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 823
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 1540
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 1541 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 1593
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 1594 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 1619
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
Score = 54.5 bits (132), Expect = 2e-07
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 51/153 (33%)
Query: 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 2113
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 2114 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 2166
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 2167 HLG-------GEDFDNRLVSHLAEEFKRKYKKD 2192
H+ G F+ AE++KR K
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHH 195
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 179
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 180 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 238
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 239 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 275
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 693 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 752
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 753 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 811
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 812 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 848
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 1548
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 1549 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 1607
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 1608 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 1644
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
Score = 52.9 bits (127), Expect = 7e-07
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 9/157 (5%)
Query: 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 2121
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 2122 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 2180
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 2181 LAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS 2217
AE++KR +KK + P AE R +
Sbjct: 189 EAEQYKRGHKKGEEIFPVVKPVYEKMAEIVARHIEGQ 225
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 139 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 192
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 193 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 251
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 252 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 307
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 308 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 356
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 357 LNLSINPDEAVAYGAA 372
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 712 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 765
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 766 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 824
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 825 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 880
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 881 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 929
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 930 LNLSINPDEAVAYGAA 945
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 1508 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 1561
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 1562 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 1620
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 1621 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 1676
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 1677 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 1725
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 1726 LNLSINPDEAVAYGAA 1741
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
Score = 52.8 bits (128), Expect = 1e-06
Identities = 63/256 (24%), Positives = 110/256 (42%), Gaps = 57/256 (22%)
Query: 2081 AVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV------ 2134
VI VP+ + +R+A ++A AG + ++ EP AAA+ GL V
Sbjct: 103 IVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAGLP--------VTEPVGN 154
Query: 2135 LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDM 2193
++ D+GGGT +V+++S+ E +R + G++ D +V ++ +RKY +
Sbjct: 155 MVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDEAIVQYV----RRKYN--L 201
Query: 2194 SVNPRALRRLRTAAERAKRTLSSST----EASIEIDALYDGIDFYTKISRARFEELCSDL 2249
+ R AE K + S+ E S+E+ G D T + E+ S+
Sbjct: 202 LIGER-------TAEEIKIEIGSAYPLDEEESMEV----RGRDLVT--GLPKTIEISSEE 248
Query: 2250 FRSTLQP--------VEKALQDAKLDKSA-IHD--VVLVGGSTRIPKVQSLLQNFFCGKS 2298
R L V+ L+ + +A I D +VL GG + + LL G
Sbjct: 249 VREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLP 307
Query: 2299 LNLSINPDEAVAYGAA 2314
++++ +P VA G
Sbjct: 308 VHIAEDPLTCVARGTG 323
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 114 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 165
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 166 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 225
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 226 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 255
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 256 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 286
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 347 LLQ 349
L
Sbjct: 418 ALA 420
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 687 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 738
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 739 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 798
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 799 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 828
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 829 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 859
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 920 LLQ 922
L
Sbjct: 418 ALA 420
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 1483 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 1534
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 1535 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 1594
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 1595 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 1624
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 1625 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 1655
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 1716 LLQ 1718
L
Sbjct: 418 ALA 420
Score = 52.9 bits (128), Expect = 2e-06
Identities = 78/303 (25%), Positives = 117/303 (38%), Gaps = 76/303 (25%)
Query: 2056 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQAT---KDAGAIAGLN 2107
E++ ++ +K+ AEA L ++ AVI P F +A RQA + A AG
Sbjct: 127 EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFK 186
Query: 2108 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH 2167
+ EP AA L + + L E+ VL+ D+GGGT D S+L + G + R+ +
Sbjct: 187 DVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTTDCSMLLM--GPSWRGRADRSASL 242
Query: 2168 L-------GGEDFD-----NRLVSHLAEEFKRKYKKDMSVNP------------------ 2197
L GG D D +L+ L + + + P
Sbjct: 243 LGHSGQRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYS 302
Query: 2198 ----RALRRL-RTAAE------------------------RAKRTLSSSTEASIEIDALY 2228
R L L R A E AK LS E +D +
Sbjct: 303 LANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS 362
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
DG+ T+IS+ EE S L+ V+ AL A++ I+ L GGS R P +++
Sbjct: 363 DGLA--TEISQQGLEEAISQPLARILELVQLALDQAQVKPDVIY---LTGGSARSPLIRA 417
Query: 2289 LLQ 2291
L
Sbjct: 418 ALA 420
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 117 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 176
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 177 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 237 S-HLAEEFKRKYKKDMSV 253
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 690 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 749
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 750 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 809
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 810 S-HLAEEFKRKYKKDMSV 826
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 1486 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 1545
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 1546 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 1605
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 1606 S-HLAEEFKRKYKKDMSV 1622
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
Score = 50.1 bits (120), Expect = 4e-06
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 2059 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 2118
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 2119 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 2178
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 2179 S-HLAEEFKRKYKKDMSV 2195
S AEE+KR +K + +
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 126 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 174
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 175 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 235 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 290
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 291 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 341
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 342 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 371
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 699 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 747
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 748 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 807
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 808 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 863
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 864 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 914
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 915 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 944
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 1495 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 1543
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 1544 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 1603
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 1604 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 1659
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 1660 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 1710
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 1711 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 1740
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
Score = 50.2 bits (121), Expect = 9e-06
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 50/270 (18%)
Query: 2068 ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 2116
E EA L + ++ VI VP+ + +R+A K+A AG + ++ EP
Sbjct: 72 EVTEAMLKYFIKKVHGRRSLSKPRVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPM 131
Query: 2117 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 2176
AAA+ GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D
Sbjct: 132 AAAIGAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEA 183
Query: 2177 LVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS----STEASIEIDALYDGID 2232
++ ++ ++KY + + R AER K + S E +EI G D
Sbjct: 184 IIKYI----RKKYN--LLIGER-------TAERIKIEIGSAYPTEEEEKMEI----RGRD 226
Query: 2233 FYT------KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSA-IHD--VVLVGGSTRI 2283
T +IS E + + ++ V++ L+ + +A I D +VL GG +
Sbjct: 227 LVTGLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALL 286
Query: 2284 PKVQSLLQNFFCGKSLNLSINPDEAVAYGA 2313
+ LL + G ++++ +P VA G
Sbjct: 287 RGLDKLLSDET-GLPVHIAEDPLTCVALGT 315
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 222 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 275
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 276 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 335
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 336 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 373
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 735 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 794
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 795 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 848
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 849 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 908
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 909 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 946
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 1590
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 1591 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 1644
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 1645 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 1704
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 1705 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 1742
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
Score = 50.3 bits (121), Expect = 9e-06
Identities = 63/225 (28%), Positives = 95/225 (42%), Gaps = 42/225 (18%)
Query: 2104 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 2163
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGALRYTGVIP 232
Query: 2164 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------S 2217
+GG+ KD++ + L+ AER K S
Sbjct: 233 ----VGGDHV----------------TKDIA---KGLKTPFEEAERIKIKYGSALISLAD 269
Query: 2218 TEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLV 2277
E +IE+ ++ G D +++R+ E+ L+ V+ L+ + L VVL
Sbjct: 270 DEETIEVPSV--GSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLT 327
Query: 2278 GGSTRIPKVQSLLQNFF-----CGKSLNLSINPDEAV--AYGAAV 2315
GG ++P + L + F G LN+ D A A+ AV
Sbjct: 328 GGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAV 372
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 115 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 172
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 173 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 232
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 233 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 287 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 344
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 345 QSLLQNFFCGKSLNLSINPDEAVAYG 370
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 688 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 745
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 746 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 805
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 806 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 860 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 917
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 918 QSLLQNFFCGKSLNLSINPDEAVAYG 943
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 1484 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 1541
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 1542 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 1601
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 1602 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 1656 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 1713
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 1714 QSLLQNFFCGKSLNLSINPDEAVAYG 1739
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
Score = 48.7 bits (116), Expect = 3e-05
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 2057 EISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNE 2114
++++ +L ++ + A +G + R + V+ P+ +R+A DA G + ++ E
Sbjct: 75 DMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEE 134
Query: 2115 PTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFD 2174
P AAA+ G D + ++ D+GGGT +V+I+S G + S +GG+ D
Sbjct: 135 PVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLD 186
Query: 2175 NRLVSHLAEEF------KRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
+VS + +++ + + M + + E R L + +I +++
Sbjct: 187 EDIVSFVRKKYNLLIGERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLES-- 244
Query: 2229 DGIDFYTKISRARFEELCSDL--FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 2286
+I A E L L R+TL+ L +D+ V+L GG + +
Sbjct: 245 ------KEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGI 294
Query: 2287 QSLLQNFFCGKSLNLSINPDEAVAYG 2312
+ L ++++ NP E+VA G
Sbjct: 295 KEWLSEEIV-VPVHVAANPLESVAIG 319
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 200 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 247
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 773 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 820
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
Score = 48.2 bits (115), Expect = 3e-05
Identities = 32/108 (29%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
VI VP+ +R+A K++ AG + ++ EP AAA+ GL ++ ++ D+GG
Sbjct: 102 VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLP--VEEPTGSMVVDIGG 159
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 2189
GT +V+++S+ G + RS +GG++FD +++++ +R Y
Sbjct: 160 GTTEVAVISL--GGIVVSRS----IRVGGDEFDEAIINYI----RRTY 197
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 200 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 248
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 773 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 821
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 1617
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
Score = 47.2 bits (113), Expect = 7e-05
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 12/109 (11%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
+I +P +++A ++A AG + ++ EP AAA+ GLD + ++ D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLD--ISQPSGNMVVDIGG 156
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYK 2190
GT D+++LS+ G + S + G+ FD ++ ++ ++KYK
Sbjct: 157 GTTDIAVLSL--GGIVTSSS----IKVAGDKFDEAIIRYI----RKKYK 195
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 168 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 227 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 286
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 287 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 346
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 347 LLQNFFCGKSLNLSINPDEAVAYG 370
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 741 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 799
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 800 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 859
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 860 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 919
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 920 LLQNFFCGKSLNLSINPDEAVAYG 943
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 1537 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 1595
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 1596 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 1655
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 1656 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 1715
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 1716 LLQNFFCGKSLNLSINPDEAVAYG 1739
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
Score = 42.8 bits (101), Expect = 0.001
Identities = 48/204 (23%), Positives = 77/204 (37%), Gaps = 39/204 (19%)
Query: 2110 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 2168
++ E A LD+ + VL+ D+GGGT DV + D G E S +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKPVESSS---GSLE 198
Query: 2169 GGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALY 2228
G + L +A+E ++Y D+S E R +I
Sbjct: 199 LG---VSDLYEAIAKELNKEYGIDLS---------DEEIEEILRNG--------KIKNYG 238
Query: 2229 DGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 2288
D I A EE + +++ L + +DK V+LVGG + K +
Sbjct: 239 KEEDITEIIEEAA-EEYAEKILNE----LKEFLGLSDVDK-----VILVGGGAILLK-EY 287
Query: 2289 LLQNFFCGKSLNLSINPDEAVAYG 2312
L + F +++ L +P A A G
Sbjct: 288 LKELF--PENVVLVDDPQFANARG 309
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 242
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 243 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 301
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 302 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 337
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 338 STRIPKVQSLLQNFF 352
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 761 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 815
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 816 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 874
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 875 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 910
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 911 STRIPKVQSLLQNFF 925
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 1557 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 1611
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 1612 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 1670
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 1671 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 1706
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 1707 STRIPKVQSLLQNFF 1721
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
Score = 43.4 bits (102), Expect = 0.002
Identities = 48/195 (24%), Positives = 80/195 (41%), Gaps = 34/195 (17%)
Query: 2130 GERNVLIFDLGGGTFDVSILSIDE--GALFEVRSTAGDTHLG-GED--FDNRLVSHLAEE 2184
G+R + + D GGGT D+++ I++ G L E+ +G + G D F+ L E+
Sbjct: 253 GDRYI-VADCGGGTVDLTVHQIEQPQGTLKELYKASGGPYGAVGVDLAFETMLCQIFGED 311
Query: 2185 FKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE- 2243
F +K P A L A E KRT + ++ I + IDFY K E
Sbjct: 312 FIDTFKAK---RPAAWVDLTIAFEARKRTAAPGRANTLNISLPFSFIDFYRKHRGQNVET 368
Query: 2244 ----------------------ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGG 2279
E ++LF+ T+ + + +++ K + + + LVGG
Sbjct: 369 ALRKSSVNFVKWSSQGMLRMSTEAMNELFQPTINNIIQHIENLMQKPEVKGVKFLFLVGG 428
Query: 2280 STRIPKVQSLLQNFF 2294
P +Q +QN
Sbjct: 429 FAESPMLQRAVQNAL 443
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 199
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 200 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 258
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 259 RRLRT 263
+++
Sbjct: 210 EKIKI 214
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 772
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 773 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 831
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 832 RRLRT 836
+++
Sbjct: 210 EKIKI 214
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 1568
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 1569 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 1627
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 1628 RRLRT 1632
+++
Sbjct: 210 EKIKI 214
Score = 41.8 bits (99), Expect = 0.004
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 16/125 (12%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGG 2141
VI VP+ D +R+A K+A AG + ++ EP AAA G + ++ D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAA--IGAGLPIMEPTGSMVVDIGG 162
Query: 2142 GTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRAL 2200
GT +V+++S L + + + +GG+ D ++ ++ ++KY + + R
Sbjct: 163 GTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEAIIVYV----RKKYN--LLIGERTA 209
Query: 2201 RRLRT 2205
+++
Sbjct: 210 EKIKI 214
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 879 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 933
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 934 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 987
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 1675 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 1729
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 1730 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 1783
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
Score = 41.9 bits (99), Expect = 0.004
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 2248 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 2302
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 2303 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 2356
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
Score = 41.1 bits (97), Expect = 0.008
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 14/118 (11%)
Query: 306 DLFRSTLQPVEKALQDA-----KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLS 360
DL R+ L+ V AL+D+ + I + L+GG + P + +L + F
Sbjct: 363 DLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-----GTP 417
Query: 361 I---NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIER 414
+ +E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 418 VDVPEGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
Score = 33.1 bits (76), Expect = 2.4
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 1210 NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMSKLIER 1262
+E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 422 EGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 40.1 bits (95), Expect = 0.014
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 198
VI VP+ + +R+A +++ AG + ++ EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 199 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 247
GGT +V+++S+ G + V S + +GG+ FD +++++ +R Y
Sbjct: 157 GGTTEVAVISL--GGI--VYSKS--VRVGGDKFDEAIINYV----RRNY 195
Score = 40.1 bits (95), Expect = 0.014
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 713 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 771
VI VP+ + +R+A +++ AG + ++ EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 772 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 820
GGT +V+++S+ G + V S + +GG+ FD +++++ +R Y
Sbjct: 157 GGTTEVAVISL--GGI--VYSKS--VRVGGDKFDEAIINYV----RRNY 195
Score = 40.1 bits (95), Expect = 0.014
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 1509 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 1567
VI VP+ + +R+A +++ AG + ++ EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 1568 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 1616
GGT +V+++S+ G + V S + +GG+ FD +++++ +R Y
Sbjct: 157 GGTTEVAVISL--GGI--VYSKS--VRVGGDKFDEAIINYV----RRNY 195
Score = 40.1 bits (95), Expect = 0.014
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 14/109 (12%)
Query: 2082 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 2140
VI VP+ + +R+A +++ AG + ++ EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 2141 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY 2189
GGT +V+++S+ G + V S + +GG+ FD +++++ +R Y
Sbjct: 157 GGTTEVAVISL--GGI--VYSKS--VRVGGDKFDEAIINYV----RRNY 195
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 35.3 bits (82), Expect = 0.45
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 46/203 (22%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERN--VLIFDLGGGTFDVSILSIDEGALFEVRS 219
GL V IV A+A+A L ++ E+ V + D+GGGT D+++ + G++ +
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAVYT--GGSIRYTKV 223
Query: 220 TAGDTHLGGEDFDNRLVSHL-------AEEFKRKY---KKDMSVNPRALRRLRTAAERAK 269
+GG + + AE K KY + P + + ER
Sbjct: 224 IP----IGGNHITKDI-AKALRTPLEEAERIKIKYGCASIPL-EGPDENIEIPSVGERPP 277
Query: 270 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAI 329
R+LS A I I AR EE+ + +K L+ + +
Sbjct: 278 RSLSRKELAEI--------------IE-ARAEEILEIVK-------QKELRKSGFKEELN 315
Query: 330 HDVVLVGGSTRIPKVQSLLQNFF 352
+VL GG ++ + L + F
Sbjct: 316 GGIVLTGGGAQLEGIVELAEKVF 338
Score = 35.3 bits (82), Expect = 0.45
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 46/203 (22%)
Query: 735 AGLNVMRIVNEPTAAALAYGLDKNLKGERN--VLIFDLGGGTFDVSILSIDEGALFEVRS 792
GL V IV A+A+A L ++ E+ V + D+GGGT D+++ + G++ +
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAVYT--GGSIRYTKV 223
Query: 793 TAGDTHLGGEDFDNRLVSHL-------AEEFKRKY---KKDMSVNPRALRRLRTAAERAK 842
+GG + + AE K KY + P + + ER
Sbjct: 224 IP----IGGNHITKDI-AKALRTPLEEAERIKIKYGCASIPL-EGPDENIEIPSVGERPP 277
Query: 843 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAI 902
R+LS A I I AR EE+ + +K L+ + +
Sbjct: 278 RSLSRKELAEI--------------IE-ARAEEILEIVK-------QKELRKSGFKEELN 315
Query: 903 HDVVLVGGSTRIPKVQSLLQNFF 925
+VL GG ++ + L + F
Sbjct: 316 GGIVLTGGGAQLEGIVELAEKVF 338
Score = 35.3 bits (82), Expect = 0.45
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 46/203 (22%)
Query: 1531 AGLNVMRIVNEPTAAALAYGLDKNLKGERN--VLIFDLGGGTFDVSILSIDEGALFEVRS 1588
GL V IV A+A+A L ++ E+ V + D+GGGT D+++ + G++ +
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAVYT--GGSIRYTKV 223
Query: 1589 TAGDTHLGGEDFDNRLVSHL-------AEEFKRKY---KKDMSVNPRALRRLRTAAERAK 1638
+GG + + AE K KY + P + + ER
Sbjct: 224 IP----IGGNHITKDI-AKALRTPLEEAERIKIKYGCASIPL-EGPDENIEIPSVGERPP 277
Query: 1639 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAI 1698
R+LS A I I AR EE+ + +K L+ + +
Sbjct: 278 RSLSRKELAEI--------------IE-ARAEEILEIVK-------QKELRKSGFKEELN 315
Query: 1699 HDVVLVGGSTRIPKVQSLLQNFF 1721
+VL GG ++ + L + F
Sbjct: 316 GGIVLTGGGAQLEGIVELAEKVF 338
Score = 35.3 bits (82), Expect = 0.45
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 46/203 (22%)
Query: 2104 AGLNVMRIVNEPTAAALAYGLDKNLKGERN--VLIFDLGGGTFDVSILSIDEGALFEVRS 2161
GL V IV A+A+A L ++ E+ V + D+GGGT D+++ + G++ +
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAVYT--GGSIRYTKV 223
Query: 2162 TAGDTHLGGEDFDNRLVSHL-------AEEFKRKY---KKDMSVNPRALRRLRTAAERAK 2211
+GG + + AE K KY + P + + ER
Sbjct: 224 IP----IGGNHITKDI-AKALRTPLEEAERIKIKYGCASIPL-EGPDENIEIPSVGERPP 277
Query: 2212 RTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAI 2271
R+LS A I I AR EE+ + +K L+ + +
Sbjct: 278 RSLSRKELAEI--------------IE-ARAEEILEIVK-------QKELRKSGFKEELN 315
Query: 2272 HDVVLVGGSTRIPKVQSLLQNFF 2294
+VL GG ++ + L + F
Sbjct: 316 GGIVLTGGGAQLEGIVELAEKVF 338
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 33.5 bits (77), Expect = 2.0
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 501 IKNDKGRLSKEEIDRMINDAERYKDEDERQKERISAR-NNLEAYVFNVKQALDN------ 553
+K L+ E++++ + + E+ K+E E + +I+AR L+ + +K+A++
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436
Query: 554 ----AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 597
G +LTE + EE A LK + +E ++K ++L+K
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
Score = 33.5 bits (77), Expect = 2.0
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 1074 IKNDKGRLSKEEIDRMINDAERYKDEDERQKERISAR-NNLEAYVFNVKQALDN------ 1126
+K L+ E++++ + + E+ K+E E + +I+AR L+ + +K+A++
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436
Query: 1127 ----AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 1170
G +LTE + EE A LK + +E ++K ++L+K
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
Score = 33.5 bits (77), Expect = 2.0
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 1870 IKNDKGRLSKEEIDRMINDAERYKDEDERQKERISAR-NNLEAYVFNVKQALDN------ 1922
+K L+ E++++ + + E+ K+E E + +I+AR L+ + +K+A++
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436
Query: 1923 ----AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 1966
G +LTE + EE A LK + +E ++K ++L+K
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
Score = 33.5 bits (77), Expect = 2.0
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 2443 IKNDKGRLSKEEIDRMINDAERYKDEDERQKERISAR-NNLEAYVFNVKQALDN------ 2495
+K L+ E++++ + + E+ K+E E + +I+AR L+ + +K+A++
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436
Query: 2496 ----AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 2539
G +LTE + EE A LK + +E ++K ++L+K
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
>gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain.
Diol dehydratase (DDH, EC:4.2.1.28) and its
isofunctional homologue glycerol dehydratase (GDH,
EC.4.2.1.30) are enzymes which catalyze the conversion
of glycerol 1,2-propanediol, and 1,2-ethanediol to
aldehydes. These reactions require coenzyme B12.
Cleavage of the Co-C bond of coenzyme B12 by substrates
or coenzyme analogues results in inactivation during
which coenzyme B12 remains tightly bound to the
apoenzyme. This family comprises of the large subunit of
the diol dehydratase and glycerol dehydratase
reactivating factors whose function is to reactivate the
holoenzyme by exchange of a damaged cofactor for intact
coenzyme.
Length = 332
Score = 32.4 bits (74), Expect = 3.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 163 GLNVMRIVNEPTAAALAY----GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 218
G+ V E AA L G K L I DLG G+ D SI++ +
Sbjct: 109 GVPVEIGGVEAEAAILGALTTPGTPKPL------AILDLGAGSTDASIINAEGTVTATHL 162
Query: 219 STAGDT-------HLGGEDFDNRLVSHLAEEFKR 245
+ AG+ LG ED LAE+ K+
Sbjct: 163 AGAGEMVTMLINSELGLEDR------ALAEDIKK 190
Score = 32.4 bits (74), Expect = 3.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 736 GLNVMRIVNEPTAAALAY----GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 791
G+ V E AA L G K L I DLG G+ D SI++ +
Sbjct: 109 GVPVEIGGVEAEAAILGALTTPGTPKPL------AILDLGAGSTDASIINAEGTVTATHL 162
Query: 792 STAGDT-------HLGGEDFDNRLVSHLAEEFKR 818
+ AG+ LG ED LAE+ K+
Sbjct: 163 AGAGEMVTMLINSELGLEDR------ALAEDIKK 190
Score = 32.4 bits (74), Expect = 3.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 1532 GLNVMRIVNEPTAAALAY----GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 1587
G+ V E AA L G K L I DLG G+ D SI++ +
Sbjct: 109 GVPVEIGGVEAEAAILGALTTPGTPKPL------AILDLGAGSTDASIINAEGTVTATHL 162
Query: 1588 STAGDT-------HLGGEDFDNRLVSHLAEEFKR 1614
+ AG+ LG ED LAE+ K+
Sbjct: 163 AGAGEMVTMLINSELGLEDR------ALAEDIKK 190
Score = 32.4 bits (74), Expect = 3.2
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 2105 GLNVMRIVNEPTAAALAY----GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 2160
G+ V E AA L G K L I DLG G+ D SI++ +
Sbjct: 109 GVPVEIGGVEAEAAILGALTTPGTPKPL------AILDLGAGSTDASIINAEGTVTATHL 162
Query: 2161 STAGDT-------HLGGEDFDNRLVSHLAEEFKR 2187
+ AG+ LG ED LAE+ K+
Sbjct: 163 AGAGEMVTMLINSELGLEDR------ALAEDIKK 190
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 32.3 bits (74), Expect = 4.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 331 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA-ILSGDQSSAIQDV 389
++ L+GG + P + ++ + + + +EA A GAA+QAA L+G+ + +
Sbjct: 397 EIRLIGGGAKSPAWRQIIADIMNAEVVVPDT--EEAAALGAAIQAAWCLTGEDGADVALA 454
Query: 390 LLVD 393
L D
Sbjct: 455 ELCD 458
Score = 32.3 bits (74), Expect = 4.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 904 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA-ILSGDQSSAIQDV 962
++ L+GG + P + ++ + + + +EA A GAA+QAA L+G+ + +
Sbjct: 397 EIRLIGGGAKSPAWRQIIADIMNAEVVVPDT--EEAAALGAAIQAAWCLTGEDGADVALA 454
Query: 963 LLVD 966
L D
Sbjct: 455 ELCD 458
Score = 32.3 bits (74), Expect = 4.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1700 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA-ILSGDQSSAIQDV 1758
++ L+GG + P + ++ + + + +EA A GAA+QAA L+G+ + +
Sbjct: 397 EIRLIGGGAKSPAWRQIIADIMNAEVVVPDT--EEAAALGAAIQAAWCLTGEDGADVALA 454
Query: 1759 LLVD 1762
L D
Sbjct: 455 ELCD 458
Score = 32.3 bits (74), Expect = 4.4
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 2273 DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA-ILSGDQSSAIQDV 2331
++ L+GG + P + ++ + + + +EA A GAA+QAA L+G+ + +
Sbjct: 397 EIRLIGGGAKSPAWRQIIADIMNAEVVVPDT--EEAAALGAAIQAAWCLTGEDGADVALA 454
Query: 2332 LLVD 2335
L D
Sbjct: 455 ELCD 458
Score = 31.1 bits (71), Expect = 8.0
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 1212 DEAVAYGAAVQAA-ILSGDQSSAIQDVLLVD 1241
+EA A GAA+QAA L+G+ + + L D
Sbjct: 428 EEAAALGAAIQAAWCLTGEDGADVALAELCD 458
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 31.8 bits (73), Expect = 5.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA----ALAYGLDKNLKGERNVL 193
D ++ V D A +D +I+ EP A AL G + L+G+ V+
Sbjct: 257 DDIVLVD---EDEICAAMRDL-----FERTKIIAEPAGALALAALLAGKIEPLQGKTVVV 308
Query: 194 IFDLGGGTFDVSILS--IDEGALFE 216
I L GG D L+ ++ L E
Sbjct: 309 I--LSGGNIDFERLAEVLERALLGE 331
Score = 31.8 bits (73), Expect = 5.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 711 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA----ALAYGLDKNLKGERNVL 766
D ++ V D A +D +I+ EP A AL G + L+G+ V+
Sbjct: 257 DDIVLVD---EDEICAAMRDL-----FERTKIIAEPAGALALAALLAGKIEPLQGKTVVV 308
Query: 767 IFDLGGGTFDVSILS--IDEGALFE 789
I L GG D L+ ++ L E
Sbjct: 309 I--LSGGNIDFERLAEVLERALLGE 331
Score = 31.8 bits (73), Expect = 5.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 1507 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA----ALAYGLDKNLKGERNVL 1562
D ++ V D A +D +I+ EP A AL G + L+G+ V+
Sbjct: 257 DDIVLVD---EDEICAAMRDL-----FERTKIIAEPAGALALAALLAGKIEPLQGKTVVV 308
Query: 1563 IFDLGGGTFDVSILS--IDEGALFE 1585
I L GG D L+ ++ L E
Sbjct: 309 I--LSGGNIDFERLAEVLERALLGE 331
Score = 31.8 bits (73), Expect = 5.6
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 2080 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA----ALAYGLDKNLKGERNVL 2135
D ++ V D A +D +I+ EP A AL G + L+G+ V+
Sbjct: 257 DDIVLVD---EDEICAAMRDL-----FERTKIIAEPAGALALAALLAGKIEPLQGKTVVV 308
Query: 2136 IFDLGGGTFDVSILS--IDEGALFE 2158
I L GG D L+ ++ L E
Sbjct: 309 I--LSGGNIDFERLAEVLERALLGE 331
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 31.5 bits (71), Expect = 6.2
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 499 ITIKNDKGRLSKEEIDRMIND-AERYKDED---ERQKERIS-ARNNLEAYVFNV 547
I +N G SK+E++RMIN+ E ++ E+ E++K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
Score = 31.5 bits (71), Expect = 6.2
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 1072 ITIKNDKGRLSKEEIDRMIND-AERYKDED---ERQKERIS-ARNNLEAYVFNV 1120
I +N G SK+E++RMIN+ E ++ E+ E++K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
Score = 31.5 bits (71), Expect = 6.2
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 1347 ITIKNDKGRLSKEEIDRMIND-AERYKDED---ERQKERIS-ARNNLEAYVFNV 1395
I +N G SK+E++RMIN+ E ++ E+ E++K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
Score = 31.5 bits (71), Expect = 6.2
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 1868 ITIKNDKGRLSKEEIDRMIND-AERYKDED---ERQKERIS-ARNNLEAYVFNV 1916
I +N G SK+E++RMIN+ E ++ E+ E++K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
Score = 31.5 bits (71), Expect = 6.2
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 2441 ITIKNDKGRLSKEEIDRMIND-AERYKDED---ERQKERIS-ARNNLEAYVFNV 2489
I +N G SK+E++RMIN+ E ++ E+ E++K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 31.1 bits (71), Expect = 6.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR------IVNEP 173
+ M+ E + ++++ I P Y + G + + R I++ P
Sbjct: 11 LAPIMRRYLEG-VEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILSGP 62
Query: 174 TAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207
A + L G +N ++ D+GG + DVS++
Sbjct: 63 AAGVVGAAY--TLAGLKNAIVVDMGGTSTDVSLI 94
Score = 31.1 bits (71), Expect = 6.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 693 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR------IVNEP 746
+ M+ E + ++++ I P Y + G + + R I++ P
Sbjct: 11 LAPIMRRYLEG-VEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILSGP 62
Query: 747 TAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 780
A + L G +N ++ D+GG + DVS++
Sbjct: 63 AAGVVGAAY--TLAGLKNAIVVDMGGTSTDVSLI 94
Score = 31.1 bits (71), Expect = 6.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 1489 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR------IVNEP 1542
+ M+ E + ++++ I P Y + G + + R I++ P
Sbjct: 11 LAPIMRRYLEG-VEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILSGP 62
Query: 1543 TAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 1576
A + L G +N ++ D+GG + DVS++
Sbjct: 63 AAGVVGAAY--TLAGLKNAIVVDMGGTSTDVSLI 94
Score = 31.1 bits (71), Expect = 6.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 2062 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR------IVNEP 2115
+ M+ E + ++++ I P Y + G + + R I++ P
Sbjct: 11 LAPIMRRYLEG-VEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILSGP 62
Query: 2116 TAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 2149
A + L G +N ++ D+GG + DVS++
Sbjct: 63 AAGVVGAAY--TLAGLKNAIVVDMGGTSTDVSLI 94
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 31.1 bits (69), Expect = 8.8
Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 14/127 (11%)
Query: 1357 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCRE 1416
EE R+ ++ R K E R E I+ + + A++F+ + TE E+ R+
Sbjct: 46 KGEEEARLRSEEARAKFEKARP-EMIANQRAVTAHLFH----------RFTEDEE---RK 91
Query: 1417 ECDAAKNQVAMNPKNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDCSKPKIQVEFKGE 1476
+ KN+ AMN A R G+ D+ K + D+ P + + + + Q + G+
Sbjct: 92 RMEHQKNKEAMNASTAAPSASRNGGQHIDNRKRRNDVVVAPLSAEEEWKRAQQQQHWMGQ 151
Query: 1477 RKTFAPE 1483
P+
Sbjct: 152 AAPMHPQ 158
>gnl|CDD|233543 TIGR01716, RGG_Cterm, transcriptional activator, Rgg/GadR/MutR
family, C-terminal domain. This model describes the
whole, except for a 60 residue N-terminal
helix-turn-helix DNA-binding domain (PFAM pfam01381) of
the family of proteins related to the transcriptional
regulator Rgg, also called RopB. Rgg is required for
secretion of several proteins, including a cysteine
proteinase associated with virulence. GadR (GP|2352485)
is a positive regulator of a glutamate-dependent acid
resistance mechanism. MutR is a transcriptional
activator for mutacin biosynthesis genes in
Streptococcus mutans. This family appears restricted to
the low-GC Gram-positive bacteria, including at least
eight members in Lactococcus lactis [Regulatory
functions, DNA interactions].
Length = 220
Score = 30.7 bits (70), Expect = 8.9
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 511 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREEC 570
+ E+ D ++ ERI ++ G K + EK E+
Sbjct: 145 SYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE-------GQKESGEEKI---EQA 194
Query: 571 DATLKWLDNNTLADKEEYQDKLQQLQKS 598
L TLA YQ L++ K
Sbjct: 195 IEIFDELGYPTLAA--YYQKLLEKFVKK 220
Score = 30.7 bits (70), Expect = 8.9
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 1084 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREEC 1143
+ E+ D ++ ERI ++ G K + EK E+
Sbjct: 145 SYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE-------GQKESGEEKI---EQA 194
Query: 1144 DATLKWLDNNTLADKEEYQDKLQQLQKS 1171
L TLA YQ L++ K
Sbjct: 195 IEIFDELGYPTLAA--YYQKLLEKFVKK 220
Score = 30.7 bits (70), Expect = 8.9
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 1880 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREEC 1939
+ E+ D ++ ERI ++ G K + EK E+
Sbjct: 145 SYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE-------GQKESGEEKI---EQA 194
Query: 1940 DATLKWLDNNTLADKEEYQDKLQQLQKS 1967
L TLA YQ L++ K
Sbjct: 195 IEIFDELGYPTLAA--YYQKLLEKFVKK 220
Score = 30.7 bits (70), Expect = 8.9
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 2453 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREEC 2512
+ E+ D ++ ERI ++ G K + EK E+
Sbjct: 145 SYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE-------GQKESGEEKI---EQA 194
Query: 2513 DATLKWLDNNTLADKEEYQDKLQQLQKS 2540
L TLA YQ L++ K
Sbjct: 195 IEIFDELGYPTLAA--YYQKLLEKFVKK 220
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 30.8 bits (70), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 216
D+ I ++VM P + + + K+L ++LI DLGG T DV+ + G L
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESLLIVDLGGTTLDVAHVR---GQLEG 187
Query: 217 VRSTAGDTHLG 227
+ GD+ +G
Sbjct: 188 ISKIHGDSRIG 198
Score = 30.8 bits (70), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 730 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 789
D+ I ++VM P + + + K+L ++LI DLGG T DV+ + G L
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESLLIVDLGGTTLDVAHVR---GQLEG 187
Query: 790 VRSTAGDTHLG 800
+ GD+ +G
Sbjct: 188 ISKIHGDSRIG 198
Score = 30.8 bits (70), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 1526 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 1585
D+ I ++VM P + + + K+L ++LI DLGG T DV+ + G L
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESLLIVDLGGTTLDVAHVR---GQLEG 187
Query: 1586 VRSTAGDTHLG 1596
+ GD+ +G
Sbjct: 188 ISKIHGDSRIG 198
Score = 30.8 bits (70), Expect = 9.1
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 2099 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 2158
D+ I ++VM P + + + K+L ++LI DLGG T DV+ + G L
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESLLIVDLGGTTLDVAHVR---GQLEG 187
Query: 2159 VRSTAGDTHLG 2169
+ GD+ +G
Sbjct: 188 ISKIHGDSRIG 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.367
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 129,488,776
Number of extensions: 13167617
Number of successful extensions: 13198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12373
Number of HSP's successfully gapped: 351
Length of query: 2568
Length of database: 10,937,602
Length adjustment: 113
Effective length of query: 2455
Effective length of database: 5,925,600
Effective search space: 14547348000
Effective search space used: 14547348000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 68 (29.9 bits)