BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy764
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 276 bits (707), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 41 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 100
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 101 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 160
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 161 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 220
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 221 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 280
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 281 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 316
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 276 bits (707), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 19 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 79 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 138
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 139 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 198
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 199 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 258
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 259 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 150/236 (63%)
Query: 47 GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITF 106
GA+ +IS LPASQ V Y DG+L H PG +V++ ST+ P + + ARE+ +
Sbjct: 58 GADVVISXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAX 117
Query: 107 LDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNM 166
LDAPVSGGT A TLTF VGGD +LEKA+P+ + GRNI H G G GQVAK+CNN
Sbjct: 118 LDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQ 177
Query: 167 LLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYN 226
LL V +G AEA LGV G+ AK+L+++ SSG W+ EVYNP PGV N PAS +Y+
Sbjct: 178 LLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYS 237
Query: 227 GGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282
GGF L AKD+ LA++ A + T LA S+Y+ L+ +G ++DFS + +
Sbjct: 238 GGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVVQKLF 293
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 150/236 (63%)
Query: 47 GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITF 106
GA+ +IS LPASQ V Y DG+L H PG +V++ ST+ P + + ARE+ +
Sbjct: 59 GADVVISXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAX 118
Query: 107 LDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNM 166
LDAPVSGGT A TLTF VGGD +LEKA+P+ + GRNI H G G GQVAK+CNN
Sbjct: 119 LDAPVSGGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHAGPDGAGQVAKVCNNQ 178
Query: 167 LLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYN 226
LL V +G AEA LGV G+ AK+L+++ SSG W+ EVYNP PGV N PAS +Y+
Sbjct: 179 LLAVLXIGTAEAXALGVANGLEAKVLAEIXRRSSGGNWALEVYNPWPGVXENAPASRDYS 238
Query: 227 GGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282
GGF L AKD+ LA++ A + T LA S+Y+ L+ +G ++DFS + +
Sbjct: 239 GGFXAQLXAKDLGLAQEAAQASASSTPXGSLALSLYRLLLKQGYAERDFSVVQKLF 294
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 134/243 (55%), Gaps = 6/243 (2%)
Query: 44 LASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ 103
+A+ ++ I + LP + V +G G+L K G +++D S+V P ++ +A EK
Sbjct: 57 VAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKG 116
Query: 104 ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLC 163
I ++DAPVSGGTK A+ TLT MVG ++ EK +P+L +G++I H GD+G G K+
Sbjct: 117 IDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIV 176
Query: 164 NNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASN 223
NN+LLG M +AEA+ LGVK G+ + + ++I SSGR ++ E + S
Sbjct: 177 NNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAK------MEKFIMSG 230
Query: 224 NYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
++ GGF + L KD+ LA + ++ +AT I++ G +D S + + +
Sbjct: 231 DFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWE 290
Query: 284 NKT 286
T
Sbjct: 291 QMT 293
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 137/272 (50%), Gaps = 10/272 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ ++V D+N +A + GA A + +A + II+ LP S V + G +GI++
Sbjct: 28 GYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITXLPNSPHVKEVALGENGIIE 87
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + TL+ VGGDK+
Sbjct: 88 GAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVSGGEPKAIDGTLSVXVGGDKAI 147
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+K + K ++VH GD G G V KL N +++ + + +EA+ L K G+N L+
Sbjct: 148 FDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNIAAXSEALTLATKAGVNPDLVY 207
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
I G S+ + P V N+ GF+I L KD+ A D ++ AQ
Sbjct: 208 QAIR--GGLAGSTVLDAKAPXV-----XDRNFKPGFRIDLHIKDLANALDTSHGVGAQLP 260
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYI---YEFL 282
L+ + L G + D S + YE L
Sbjct: 261 LTAAVXEXXQALRADGHGNDDHSALACYYEKL 292
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 133/246 (54%), Gaps = 11/246 (4%)
Query: 18 IVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77
+V+++ + + +E + A+ L +A A I + LP +++V Y+ ++ + + +
Sbjct: 27 LVWNRTFEKALRHQEEFGSEAVPLERVAE-ARVIFTCLPTTREV---YEVAEALYPYLRE 82
Query: 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKA 137
G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT M+GG + ++E+
Sbjct: 83 GTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERV 142
Query: 138 KPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197
+P L + +VH G G G K NN LL V + E + VK G++A+ +VIN
Sbjct: 143 RPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201
Query: 198 TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKL 257
SSGR ++E P + P + F + LL KD+ +A + + A + L +L
Sbjct: 202 ASSGRSNATENLIPQRVLTRAFPKT------FALGLLVKDLGIAMGVLDGEKAPSPLLRL 255
Query: 258 ATSIYK 263
A +Y+
Sbjct: 256 AREVYE 261
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 124 bits (312), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 135/257 (52%), Gaps = 11/257 (4%)
Query: 18 IVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77
+V+++ + + +E + A+ L +A A I + LP +++V Y+ ++ + + +
Sbjct: 27 LVWNRTFEKALRHQEEFGSEAVPLERVAE-ARVIFTCLPTTREV---YEVAEALYPYLRE 82
Query: 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKA 137
G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT +GG + ++E+
Sbjct: 83 GTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVXLGGPEEAVERV 142
Query: 138 KPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197
+P L + +VH G G G K NN LL V + E + VK G++A+ +VIN
Sbjct: 143 RPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVIN 201
Query: 198 TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKL 257
SSGR ++E P + P + F + LL KD+ +A + + A + L +L
Sbjct: 202 ASSGRSNATENLIPQRVLTRAFPKT------FALGLLVKDLGIAXGVLDGEKAPSPLLRL 255
Query: 258 ATSIYKRLMDKGCQDKD 274
A +Y+ + D D
Sbjct: 256 AREVYEXAKRELGPDAD 272
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 125/267 (46%), Gaps = 7/267 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +++++ + ++ LA GA A + + +ML + G G+L+
Sbjct: 24 GCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAMLADPAAAEEVCFGKHGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G +D STVDP Q + K FL+APVSG K A++ TL + GD++
Sbjct: 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++A P + MG+ I+H GD G G KL NM++G M E + LG K G+ +
Sbjct: 144 YDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAIL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
DVI + + NP+ + + N+ F + + KD++LA L +R
Sbjct: 204 DVIGAGA-------MANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLV 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYE 280
S A ++K G D+DFS I++
Sbjct: 257 ASAAANELFKGARAAGFGDEDFSAIFK 283
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/270 (27%), Positives = 126/270 (46%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G DV V+++N L GA A S + + + + I+ML + G++G+L+
Sbjct: 24 GFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + + + FL+APVSG K A++ TL + GD+S
Sbjct: 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A P +G+ +H G+ G G KL NM++G M + E M LG G++ L
Sbjct: 144 FTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+V++ + + NP+ + S + F + + KD++LA +L +R
Sbjct: 204 EVLDAGA-------MANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLH 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ A +KR G D+DF+ ++ L+
Sbjct: 257 GAATANESFKRARAAGHADEDFAAVFRVLE 286
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 7/267 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH V V+++ + +EGA + + + + S + + + + D G G+L+
Sbjct: 53 GHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQ 112
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+PG +D STVD L+ + + FL+APVSG + + + L + GD+
Sbjct: 113 GIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGL 172
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E + MG+ G+ GN L NM+ G M +AE + L G + + L
Sbjct: 173 YEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLL 232
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
D++N G+ S + +L N+ F + + KD++LA L + T
Sbjct: 233 DILN--QGQLASIFLDQKCQNIL-----QGNFKPDFYLKYIQKDLRLAIALGDAVNHPTP 285
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYE 280
++ A +YKR D D S +Y
Sbjct: 286 MAAAANEVYKRAKALDQSDNDMSAVYR 312
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 123/272 (45%), Gaps = 11/272 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V V+++ L + GA++ S + + ++ I+ML L G+L+
Sbjct: 44 GFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLE 103
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + ++ K F++ PVSG K A++ L + GDK+
Sbjct: 104 QICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKAL 163
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E++ P +G+ + G GNG KL NM++G M +E + L K G+++ L
Sbjct: 164 FEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLL 223
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASN--NYNGGFKISLLAKDMKLAEDLANRCTAQ 251
D+++ + + NP+ P+ N +Y F + KDM+LA L +
Sbjct: 224 DILDLGA-------MTNPM--FKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVS 274
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
++ A +K+ G D DFS + E +K
Sbjct: 275 MPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 95/194 (48%), Gaps = 7/194 (3%)
Query: 48 AEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107
A+ I +P + V D G G K + G ++D S++ P + + E +L
Sbjct: 59 ADIIFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYL 118
Query: 108 DAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNML 167
DAPVSGG A+E TL+ VGG++ ++ KP+ +G+NI G +G+GQ K+ N ++
Sbjct: 119 DAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQII 178
Query: 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNG 227
+ + + V+EA+ K G + + + G SS + V + +
Sbjct: 179 VALNIEAVSEALVFASKAGADPVRVRQAL---XGGFASSRILE----VHGERXINRTFEP 231
Query: 228 GFKISLLAKDMKLA 241
GFKI+L KD+ LA
Sbjct: 232 GFKIALHQKDLNLA 245
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 126/275 (45%), Gaps = 15/275 (5%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISML---PASQDVLDAYDGSDG 70
G+ + V+++ + +LA GA + A A+ ++S L QDVL A G
Sbjct: 54 GYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSXLENGAVVQDVLFA----QG 109
Query: 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD 130
+ KPG + +D +++ P+ + + I LD PVSGGT A++ TL GG
Sbjct: 110 VAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIXAGGK 169
Query: 131 KSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190
+ E++ P+LK GR H G G+GQ+ KL N ++G+T+ VAEA+ K G +
Sbjct: 170 PADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQXIVGITIGAVAEALLFATKGGADXA 228
Query: 191 LLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTA 250
+ + I +G S V + ++ ++S+ KD + A A
Sbjct: 229 KVKEAI---TGGFADSRVLQ----LHGQRXVERDFAPRARLSIQLKDXRNALATAQEIGF 281
Query: 251 QTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
++ L +Y ++ G D D S ++ L ++
Sbjct: 282 DAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 90/185 (48%), Gaps = 8/185 (4%)
Query: 17 VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ--DVLDAYDGSDGILKH 74
V VYD +A LA+ GA +A S++ +A+ I++L +Q +V+ G H
Sbjct: 41 VTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDAQVREVVGELAG------H 94
Query: 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSL 134
AKPG ++ ST+ L+ + + I +DAPVSGG AA L MVG D+
Sbjct: 95 AKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVY 154
Query: 135 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSD 194
E+ KP K ++H G+ G G KL NML + EAM L G++ + L
Sbjct: 155 ERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGR 214
Query: 195 VINTS 199
V+ +
Sbjct: 215 VVRHT 219
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 110/267 (41%), Gaps = 9/267 (3%)
Query: 21 DKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79
D N A L EGA A S A + ++ ++ + V G DG+ KPG
Sbjct: 37 DLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLXKPGS 96
Query: 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKP 139
V SST+ Q ++ + LDAPVSGG A + T G +++ + KP
Sbjct: 97 AVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKP 156
Query: 140 ILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198
+L + N+ D+ G G K+ + +L GV + AEA L + G+ + DV+
Sbjct: 157 VLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTH 216
Query: 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLA 258
++G W E N V+ +Y + + KD+ L D A L+ A
Sbjct: 217 AAGNSWXFE--NRXQHVV-----DGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTA 269
Query: 259 TSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ + + G +D S + + +
Sbjct: 270 LNXFTSASNAGYGKEDDSAVIKIFSGE 296
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 36/199 (18%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYD 66
L+ GH+ +VYD N +A Q L +EG A S+ + + +PA+ V+D+
Sbjct: 41 LRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLXVPAA--VVDS-- 96
Query: 67 GSDGILKHAKPGV----IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 122
L+ P + IVID Q ++ R + IT++D SGG E
Sbjct: 97 ----XLQRXTPLLAANDIVIDGGNSHYQDDIRRADQXRAQGITYVDVGTSGGIFGL-ERG 151
Query: 123 LTFMVGGDKSSLEKAKPILKCMGRNI--------------------VHCGDSGNGQVAKL 162
+GG+K ++E+ P+ + + I +HCG SG G K
Sbjct: 152 YCLXIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKX 211
Query: 163 CNNMLLGVTMMGVAEAMNL 181
+N + AE +N+
Sbjct: 212 VHNGIEYGLXAAYAEGLNI 230
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 111/272 (40%), Gaps = 27/272 (9%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G++++V+++ ++ L K GA + + + + S+L V + + + + K
Sbjct: 28 GYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFS-XELVEK 86
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K GV V ST+ P+ + L+ + ++ AP+ +A + + G+ +
Sbjct: 87 LGKDGVHV-SXSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGA 145
Query: 134 LEKAKPILKCMGRNIVHCG-DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK-- 190
E+ KPI++ + + G D G V KL N + ++ EA K G++ +
Sbjct: 146 KERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACSLEXXGEAFTXAEKNGISRQSI 205
Query: 191 -------LLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAED 243
L + I + G+ +S Y PV F+ L KD+ L
Sbjct: 206 YEXLTSTLFAAPIFQNYGKLVASNTYEPV---------------AFRFPLGLKDINLTLQ 250
Query: 244 LANRCTAQTDLSKLATSIYKRLMDKGCQDKDF 275
A+ A + + + + + KG ++ D+
Sbjct: 251 TASDVNAPXPFADIIRNRFISGLAKGRENLDW 282
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67
++ +G+ V VY++ + + +E G N+ + S EF+ ++ + +L G
Sbjct: 24 IESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSI----EEFVNALEKPRKILLMVKAG 79
Query: 68 --SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
+D ++ KP G IVID + Q + E I F+ VSGG + A +
Sbjct: 80 APTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIGTGVSGGEEGALKG 139
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNI------VHCGDSGNGQVAKLCNNMLLGVTMMGV 175
+ M GG K + E +PI + + + + G G G K+ +N + M +
Sbjct: 140 P-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLI 198
Query: 176 AEAMNLGVK-LGMNAKLLSDVI 196
AEA L LGM+A L +V
Sbjct: 199 AEAYFLLKHVLGMDAAELHEVF 220
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67
++ +G+ V VY++ + + +E G N+ + S EF+ ++ + +L G
Sbjct: 23 IESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSI----EEFVNALEKPRKILLMVKAG 78
Query: 68 --SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
+D ++ KP G IVID + Q + E I F+ VSGG + A +
Sbjct: 79 APTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIGTGVSGGEEGALKG 138
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNI------VHCGDSGNGQVAKLCNNMLLGVTMMGV 175
+ M GG K + E +PI + + + + G G G K+ +N + M +
Sbjct: 139 P-SIMPGGQKEAHELVRPIFEAIAAKVDGEPCTTYIGPDGAGHYVKMVHNGIEYGDMQLI 197
Query: 176 AEAMNLGVK-LGMNAKLLSDVI 196
AEA L LGM+A L +V
Sbjct: 198 AEAYFLLKHVLGMDAAELHEVF 219
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 32/193 (16%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL--DAYDG 67
++ +G+ V V++++ + ++ + E N L + EF+ S+ + +L A G
Sbjct: 34 IESRGYTVSVFNRSREKTEEVIAE--NPGKKLVPYYTVQEFVESLETPRRILLMVKAGAG 91
Query: 68 SDGILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQIT-----FLDAPVSGGTKAA 118
+D + KP G I+ID Q + R ++++ F+ VSGG
Sbjct: 92 TDSAIDSLKPYLDKGDIIIDGGNTFFQ-----DTIRRNRELSAEGFNFIGTGVSGG---- 142
Query: 119 QEATL---TFMVGGDKSSLEKAKPILKCMGRN-------IVHCGDSGNGQVAKLCNNMLL 168
+E TL + M GG K + E PILK + + + G G G K+ +N +
Sbjct: 143 EEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIE 202
Query: 169 GVTMMGVAEAMNL 181
M +AEA L
Sbjct: 203 YGDMQLIAEAYAL 215
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 100 REKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV-------HCG 152
++K I F+ + VSGG A+ + M GG+K + K I + + + G
Sbjct: 116 KDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174
Query: 153 DSGNGQVAKLCNNMLLGVTMMGVAEAMNL 181
D G G K+ +N + M + EA +L
Sbjct: 175 DDGAGHFVKMVHNGIEYGDMQLICEAYHL 203
>pdb|1DI1|A Chain A, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DI1|B Chain B, Crystal Structure Of Aristolochene Synthase From
Penicillium Roqueforti
pdb|1DGP|A Chain A, Aristolochene Synthase Farnesol Complex
pdb|1DGP|B Chain B, Aristolochene Synthase Farnesol Complex
Length = 300
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 16 DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVL 62
D+ YDK +AS+T KEGA + ++ LA ++ I PA++ VL
Sbjct: 206 DIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGI---PATKRVL 249
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 40 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 83
+L+ + + A+ I+S+LPA+++ + S +H KPG I+ +
Sbjct: 187 ALNKMLAQADVIVSVLPATRETHHLFTASR--FEHCKPGAILFN 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,840,388
Number of Sequences: 62578
Number of extensions: 302117
Number of successful extensions: 861
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 31
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)