Query psy764
Match_columns 286
No_of_seqs 275 out of 1569
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 23:36:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 3.1E-65 6.8E-70 431.1 31.2 276 1-283 10-286 (286)
2 KOG0409|consensus 100.0 1.4E-61 3E-66 400.8 30.3 277 1-284 45-322 (327)
3 TIGR01692 HIBADH 3-hydroxyisob 100.0 6.9E-56 1.5E-60 384.2 33.2 283 1-283 6-288 (288)
4 PRK15059 tartronate semialdehy 100.0 5.4E-56 1.2E-60 384.1 32.3 277 1-285 10-286 (292)
5 PRK15461 NADH-dependent gamma- 100.0 2.8E-54 6.1E-59 374.9 32.6 278 1-284 11-288 (296)
6 PLN02858 fructose-bisphosphate 100.0 1.1E-51 2.4E-56 414.0 31.3 277 1-284 14-293 (1378)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 8.8E-50 1.9E-54 346.9 32.6 278 1-285 9-286 (291)
8 PRK11559 garR tartronate semia 100.0 5.7E-49 1.2E-53 342.7 31.9 277 2-285 13-289 (296)
9 PLN02858 fructose-bisphosphate 100.0 8.7E-49 1.9E-53 393.2 31.7 276 2-284 335-613 (1378)
10 PLN02350 phosphogluconate dehy 100.0 1E-45 2.2E-50 336.4 26.2 255 2-267 17-299 (493)
11 PRK12490 6-phosphogluconate de 100.0 1.7E-45 3.7E-50 320.5 23.7 269 2-283 11-292 (299)
12 PRK09599 6-phosphogluconate de 100.0 1.6E-42 3.5E-47 302.2 23.5 269 1-283 10-293 (301)
13 PRK09287 6-phosphogluconate de 100.0 1E-40 2.2E-45 302.3 24.9 246 2-258 1-272 (459)
14 PTZ00142 6-phosphogluconate de 100.0 2.2E-37 4.8E-42 281.6 24.5 248 1-259 11-284 (470)
15 TIGR00872 gnd_rel 6-phosphoglu 100.0 3E-37 6.4E-42 268.5 22.6 246 2-259 11-266 (298)
16 TIGR00873 gnd 6-phosphoglucona 100.0 9E-37 2E-41 277.8 24.0 248 1-259 9-280 (467)
17 TIGR03026 NDP-sugDHase nucleot 100.0 3.3E-34 7.1E-39 260.1 23.1 244 1-265 10-296 (411)
18 PF03446 NAD_binding_2: NAD bi 100.0 3E-34 6.6E-39 228.3 12.9 151 2-153 12-163 (163)
19 COG1023 Gnd Predicted 6-phosph 100.0 3.9E-31 8.5E-36 212.4 16.7 244 2-259 11-267 (300)
20 PRK14618 NAD(P)H-dependent gly 100.0 1.6E-31 3.4E-36 236.1 14.4 264 2-285 15-323 (328)
21 PRK15182 Vi polysaccharide bio 100.0 7.2E-30 1.6E-34 230.9 22.1 241 2-264 17-292 (425)
22 PRK11064 wecC UDP-N-acetyl-D-m 100.0 6E-29 1.3E-33 225.1 24.6 241 1-265 13-295 (415)
23 PRK15057 UDP-glucose 6-dehydro 100.0 4.7E-28 1E-32 216.7 23.2 233 2-265 11-283 (388)
24 PRK00094 gpsA NAD(P)H-dependen 100.0 8.7E-29 1.9E-33 218.6 16.9 266 2-284 12-324 (325)
25 PRK14619 NAD(P)H-dependent gly 99.9 3E-27 6.5E-32 206.8 15.3 244 2-284 15-300 (308)
26 PRK06129 3-hydroxyacyl-CoA deh 99.9 2.2E-25 4.7E-30 195.1 21.7 256 2-281 13-295 (308)
27 PRK12557 H(2)-dependent methyl 99.9 2.3E-25 5E-30 195.7 19.0 187 3-197 32-237 (342)
28 COG0362 Gnd 6-phosphogluconate 99.9 2.1E-25 4.5E-30 191.4 15.4 193 2-198 14-221 (473)
29 PF14833 NAD_binding_11: NAD-b 99.9 3.7E-25 8E-30 167.5 10.7 122 155-282 1-122 (122)
30 COG1004 Ugd Predicted UDP-gluc 99.9 2E-22 4.3E-27 174.7 21.8 243 2-264 11-293 (414)
31 COG0240 GpsA Glycerol-3-phosph 99.9 3E-23 6.5E-28 177.5 14.7 258 2-263 12-309 (329)
32 PLN02688 pyrroline-5-carboxyla 99.9 3.3E-22 7.2E-27 171.7 16.9 238 1-269 10-264 (266)
33 COG0677 WecC UDP-N-acetyl-D-ma 99.9 1.2E-21 2.5E-26 169.3 19.7 244 2-253 20-302 (436)
34 PLN02353 probable UDP-glucose 99.9 4.4E-21 9.4E-26 175.3 24.7 242 2-262 12-303 (473)
35 KOG2653|consensus 99.9 2.2E-22 4.7E-27 170.4 14.3 193 2-198 17-225 (487)
36 PRK07679 pyrroline-5-carboxyla 99.9 5.9E-22 1.3E-26 171.1 14.8 233 2-269 14-269 (279)
37 PRK07531 bifunctional 3-hydrox 99.9 4E-20 8.8E-25 171.3 18.8 189 1-205 14-226 (495)
38 PRK08229 2-dehydropantoate 2-r 99.8 1.1E-19 2.4E-24 161.6 14.8 249 2-272 13-323 (341)
39 PTZ00345 glycerol-3-phosphate 99.8 7.3E-19 1.6E-23 155.6 17.0 268 2-283 22-354 (365)
40 PRK12439 NAD(P)H-dependent gly 99.8 5.8E-19 1.3E-23 156.5 14.8 270 2-283 18-328 (341)
41 TIGR03376 glycerol3P_DH glycer 99.8 8E-19 1.7E-23 154.3 14.6 256 2-263 10-330 (342)
42 PRK08507 prephenate dehydrogen 99.8 5.8E-17 1.3E-21 139.8 24.6 184 1-198 10-208 (275)
43 TIGR01724 hmd_rel H2-forming N 99.8 9.4E-18 2E-22 142.6 18.9 143 3-152 32-193 (341)
44 PRK08268 3-hydroxy-acyl-CoA de 99.8 1E-17 2.2E-22 155.2 16.5 177 1-201 17-227 (507)
45 PRK12491 pyrroline-5-carboxyla 99.8 1.7E-17 3.7E-22 142.3 16.3 245 1-269 12-267 (272)
46 PRK11199 tyrA bifunctional cho 99.8 1.8E-17 3.8E-22 148.4 17.0 169 1-194 109-279 (374)
47 PRK09260 3-hydroxybutyryl-CoA 99.8 1.8E-17 3.8E-22 143.9 15.7 181 1-199 11-220 (288)
48 PRK08655 prephenate dehydrogen 99.8 1.6E-16 3.4E-21 144.9 20.6 188 1-197 11-203 (437)
49 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 3.2E-17 7E-22 151.4 15.4 176 2-201 16-225 (503)
50 PRK07417 arogenate dehydrogena 99.7 2.8E-17 6.1E-22 141.9 12.4 166 1-174 10-188 (279)
51 PRK06476 pyrroline-5-carboxyla 99.7 2.3E-16 5E-21 134.8 16.7 235 1-265 10-253 (258)
52 PRK07680 late competence prote 99.7 2.3E-16 5E-21 135.9 16.2 185 2-199 11-205 (273)
53 PRK14620 NAD(P)H-dependent gly 99.7 3.2E-16 6.9E-21 138.5 17.2 267 2-281 11-323 (326)
54 COG0345 ProC Pyrroline-5-carbo 99.7 4.2E-16 9E-21 131.3 16.3 243 1-269 11-264 (266)
55 PRK08269 3-hydroxybutyryl-CoA 99.7 2.2E-16 4.7E-21 138.0 15.0 176 2-201 1-220 (314)
56 PRK11880 pyrroline-5-carboxyla 99.7 2.1E-15 4.5E-20 129.6 18.6 242 2-269 13-265 (267)
57 PRK06130 3-hydroxybutyryl-CoA 99.7 5.1E-15 1.1E-19 130.0 16.2 184 2-201 15-221 (311)
58 PRK06545 prephenate dehydrogen 99.6 1E-14 2.2E-19 130.3 16.9 186 1-198 10-212 (359)
59 PLN02545 3-hydroxybutyryl-CoA 99.6 1.5E-14 3.2E-19 126.1 15.2 180 1-199 14-222 (295)
60 TIGR00112 proC pyrroline-5-car 99.6 2.7E-14 5.8E-19 120.9 15.5 229 14-266 9-244 (245)
61 PTZ00431 pyrroline carboxylate 99.6 2.7E-14 5.9E-19 122.0 13.8 236 1-269 13-260 (260)
62 PRK07530 3-hydroxybutyryl-CoA 99.6 9.1E-14 2E-18 121.0 17.1 177 2-199 15-222 (292)
63 PRK07819 3-hydroxybutyryl-CoA 99.6 7E-14 1.5E-18 121.0 15.4 181 2-200 16-226 (286)
64 PRK07502 cyclohexadienyl dehyd 99.6 1.2E-13 2.6E-18 121.0 17.1 161 2-167 17-193 (307)
65 PRK06928 pyrroline-5-carboxyla 99.6 8.1E-14 1.8E-18 120.2 14.4 240 2-267 12-265 (277)
66 PRK06035 3-hydroxyacyl-CoA deh 99.5 1.2E-13 2.6E-18 120.1 13.4 179 1-199 13-224 (291)
67 PRK07634 pyrroline-5-carboxyla 99.5 2.4E-12 5.2E-17 109.2 16.4 185 2-199 15-209 (245)
68 PRK12921 2-dehydropantoate 2-r 99.5 5.4E-12 1.2E-16 110.5 19.2 246 2-265 11-300 (305)
69 PF02153 PDH: Prephenate dehyd 99.5 3.5E-12 7.7E-17 108.8 16.5 157 6-167 1-172 (258)
70 COG0287 TyrA Prephenate dehydr 99.4 4.2E-12 9.1E-17 108.7 16.0 159 1-164 13-182 (279)
71 PRK08293 3-hydroxybutyryl-CoA 99.4 5.4E-12 1.2E-16 109.5 16.6 183 1-200 13-225 (287)
72 PRK07066 3-hydroxybutyryl-CoA 99.4 1.2E-11 2.5E-16 108.1 17.6 188 1-204 17-228 (321)
73 PLN02712 arogenate dehydrogena 99.4 8E-12 1.7E-16 119.3 17.3 153 1-160 379-544 (667)
74 PF03721 UDPG_MGDP_dh_N: UDP-g 99.4 2.9E-12 6.2E-17 103.6 10.7 135 2-139 11-184 (185)
75 PRK14806 bifunctional cyclohex 99.4 1.2E-11 2.6E-16 120.8 15.2 172 2-178 14-201 (735)
76 PLN02256 arogenate dehydrogena 99.4 3.2E-11 6.9E-16 105.0 15.6 156 1-162 46-213 (304)
77 TIGR01915 npdG NADPH-dependent 99.4 1.5E-11 3.3E-16 102.5 13.1 154 2-161 12-197 (219)
78 PRK06522 2-dehydropantoate 2-r 99.3 8.4E-11 1.8E-15 102.9 17.8 245 2-266 11-298 (304)
79 PRK05808 3-hydroxybutyryl-CoA 99.3 1.4E-10 3E-15 100.5 17.2 180 2-199 14-221 (282)
80 KOG2666|consensus 99.3 2.5E-10 5.5E-15 96.3 17.1 218 15-251 27-290 (481)
81 PF01210 NAD_Gly3P_dh_N: NAD-d 99.3 1E-11 2.2E-16 98.0 8.1 127 2-132 10-155 (157)
82 PRK05479 ketol-acid reductoiso 99.3 2.7E-10 5.9E-15 99.4 16.4 176 2-192 28-224 (330)
83 COG2085 Predicted dinucleotide 99.3 7.1E-11 1.5E-15 95.2 11.1 154 1-161 11-188 (211)
84 PRK08818 prephenate dehydrogen 99.2 3.9E-10 8.4E-15 100.2 15.6 145 1-164 15-166 (370)
85 PLN02712 arogenate dehydrogena 99.2 4.2E-10 9.2E-15 107.6 15.9 155 1-161 62-228 (667)
86 TIGR00745 apbA_panE 2-dehydrop 99.2 3.5E-09 7.6E-14 92.1 19.1 243 2-265 2-290 (293)
87 PF03807 F420_oxidored: NADP o 99.1 7.1E-11 1.5E-15 85.2 5.6 80 2-86 10-95 (96)
88 TIGR00465 ilvC ketol-acid redu 99.1 3.4E-09 7.4E-14 92.6 15.4 184 1-199 13-217 (314)
89 PRK06249 2-dehydropantoate 2-r 99.1 1.1E-08 2.5E-13 89.8 17.2 245 2-266 16-309 (313)
90 PF10727 Rossmann-like: Rossma 99.1 2.9E-10 6.3E-15 85.7 6.1 100 1-107 20-123 (127)
91 cd01065 NAD_bind_Shikimate_DH 99.0 8.8E-10 1.9E-14 86.7 6.7 101 2-108 30-137 (155)
92 KOG3124|consensus 98.9 4.7E-08 1E-12 80.7 14.4 237 3-269 12-265 (267)
93 PF00984 UDPG_MGDP_dh: UDP-glu 98.9 2.4E-08 5.2E-13 71.5 11.2 93 155-263 2-94 (96)
94 PRK07574 formate dehydrogenase 98.9 1.5E-08 3.2E-13 90.7 10.3 102 2-105 203-304 (385)
95 COG4007 Predicted dehydrogenas 98.9 3.7E-07 8.1E-12 75.3 17.4 182 3-192 33-234 (340)
96 PLN03139 formate dehydrogenase 98.8 2.8E-08 6E-13 89.0 10.3 102 2-105 210-311 (386)
97 PRK05708 2-dehydropantoate 2-r 98.8 2.3E-07 4.9E-12 81.3 15.7 248 2-271 13-303 (305)
98 COG1893 ApbA Ketopantoate redu 98.8 1.3E-07 2.9E-12 82.5 13.7 246 2-267 11-301 (307)
99 PF02737 3HCDH_N: 3-hydroxyacy 98.7 3.2E-08 6.9E-13 79.8 7.3 143 2-152 10-178 (180)
100 PRK06436 glycerate dehydrogena 98.7 4.7E-08 1E-12 85.1 8.4 95 2-104 133-228 (303)
101 PRK13243 glyoxylate reductase; 98.7 5.8E-08 1.3E-12 85.9 9.1 99 2-104 161-259 (333)
102 PRK12480 D-lactate dehydrogena 98.7 9.3E-08 2E-12 84.4 9.8 97 2-104 157-253 (330)
103 PRK13403 ketol-acid reductoiso 98.7 6.7E-08 1.4E-12 83.5 7.4 138 2-147 27-173 (335)
104 PRK08605 D-lactate dehydrogena 98.6 1.7E-07 3.6E-12 83.0 9.0 98 2-104 157-255 (332)
105 PRK11730 fadB multifunctional 98.6 1.7E-06 3.7E-11 84.0 16.5 182 1-200 323-531 (715)
106 COG1250 FadB 3-hydroxyacyl-CoA 98.6 4E-06 8.8E-11 72.5 16.4 183 1-201 13-223 (307)
107 PRK14194 bifunctional 5,10-met 98.6 1.6E-07 3.4E-12 80.9 6.8 64 1-87 170-233 (301)
108 TIGR02437 FadB fatty oxidation 98.5 2.8E-06 6.1E-11 82.4 15.8 182 1-200 323-531 (714)
109 PRK11154 fadJ multifunctional 98.5 3.3E-06 7.2E-11 82.0 16.1 179 1-197 319-525 (708)
110 TIGR02440 FadJ fatty oxidation 98.5 3.8E-06 8.2E-11 81.5 16.4 179 1-197 314-520 (699)
111 TIGR01327 PGDH D-3-phosphoglyc 98.5 3.1E-07 6.7E-12 86.2 8.7 101 2-105 149-249 (525)
112 PRK15469 ghrA bifunctional gly 98.5 2.6E-07 5.5E-12 80.9 7.5 100 2-105 147-246 (312)
113 PF02826 2-Hacid_dh_C: D-isome 98.5 2.1E-07 4.5E-12 75.0 6.0 99 2-103 47-145 (178)
114 TIGR02441 fa_ox_alpha_mit fatt 98.5 2.9E-06 6.3E-11 82.6 14.6 177 1-196 345-549 (737)
115 PRK13581 D-3-phosphoglycerate 98.5 5.4E-07 1.2E-11 84.5 8.6 99 2-104 151-249 (526)
116 PRK14188 bifunctional 5,10-met 98.4 4.5E-07 9.8E-12 78.2 6.9 63 1-87 169-232 (296)
117 PRK06141 ornithine cyclodeamin 98.4 3.7E-07 8.1E-12 80.2 5.8 98 2-108 136-241 (314)
118 PRK06444 prephenate dehydrogen 98.4 2.1E-05 4.4E-10 64.1 14.8 118 2-166 12-134 (197)
119 TIGR02853 spore_dpaA dipicolin 98.4 2.1E-06 4.5E-11 74.4 9.3 99 2-110 162-262 (287)
120 KOG2711|consensus 98.4 7.3E-06 1.6E-10 70.6 12.0 234 35-285 93-367 (372)
121 KOG2380|consensus 98.3 7.1E-06 1.5E-10 70.6 11.4 195 1-205 62-272 (480)
122 TIGR00507 aroE shikimate 5-deh 98.3 1.3E-06 2.8E-11 75.1 7.0 101 2-108 128-235 (270)
123 PF07991 IlvN: Acetohydroxy ac 98.3 2.6E-06 5.7E-11 66.2 6.3 81 2-86 15-96 (165)
124 PLN02928 oxidoreductase family 98.2 4.3E-06 9.4E-11 74.4 8.5 100 2-104 170-281 (347)
125 PRK00257 erythronate-4-phospha 98.2 4.9E-06 1.1E-10 74.6 7.9 95 2-103 127-225 (381)
126 PRK13302 putative L-aspartate 98.2 9.1E-06 2E-10 69.9 9.1 99 2-107 17-120 (271)
127 cd01075 NAD_bind_Leu_Phe_Val_D 98.2 1.4E-05 3E-10 65.6 9.7 97 2-108 39-137 (200)
128 COG0111 SerA Phosphoglycerate 98.2 5.3E-06 1.2E-10 72.8 7.4 98 2-102 153-250 (324)
129 COG1052 LdhA Lactate dehydroge 98.1 1.3E-05 2.7E-10 70.4 9.2 99 2-104 157-255 (324)
130 PRK11790 D-3-phosphoglycerate 98.1 9.2E-06 2E-10 73.9 8.4 97 2-104 162-258 (409)
131 PRK14179 bifunctional 5,10-met 98.1 7.1E-06 1.5E-10 70.2 6.6 65 1-88 169-233 (284)
132 PRK08306 dipicolinate synthase 98.1 1.5E-05 3.4E-10 69.3 8.8 98 2-109 163-262 (296)
133 KOG2304|consensus 98.0 3E-05 6.5E-10 63.1 8.7 182 1-201 21-237 (298)
134 PRK15409 bifunctional glyoxyla 98.0 3E-05 6.4E-10 68.3 8.9 99 2-104 156-255 (323)
135 PRK13304 L-aspartate dehydroge 98.0 3.5E-05 7.7E-10 66.1 9.0 98 2-106 12-116 (265)
136 KOG2305|consensus 98.0 7.9E-05 1.7E-09 60.8 9.9 187 1-202 13-227 (313)
137 PRK08410 2-hydroxyacid dehydro 98.0 3.6E-05 7.8E-10 67.5 8.7 97 2-105 156-252 (311)
138 PRK06487 glycerate dehydrogena 97.9 8.4E-05 1.8E-09 65.4 9.6 94 2-104 159-252 (317)
139 PRK15438 erythronate-4-phospha 97.9 5.7E-05 1.2E-09 67.7 7.9 94 2-102 127-224 (378)
140 PRK06932 glycerate dehydrogena 97.8 7.4E-05 1.6E-09 65.6 8.3 95 2-104 158-252 (314)
141 PLN02306 hydroxypyruvate reduc 97.8 0.00014 3E-09 65.6 9.2 101 2-104 176-291 (386)
142 PRK00961 H(2)-dependent methyl 97.8 0.0013 2.8E-08 55.3 13.7 111 33-152 127-242 (342)
143 COG5495 Uncharacterized conser 97.8 0.00091 2E-08 54.8 12.4 170 10-189 26-205 (289)
144 KOG0069|consensus 97.7 0.00012 2.6E-09 64.0 7.9 97 2-101 173-269 (336)
145 TIGR01723 hmd_TIGR 5,10-methen 97.7 0.0015 3.3E-08 55.0 13.8 112 33-152 125-240 (340)
146 PF02558 ApbA: Ketopantoate re 97.7 5.6E-05 1.2E-09 59.0 4.8 81 2-87 9-103 (151)
147 smart00859 Semialdhyde_dh Semi 97.6 0.00011 2.3E-09 55.3 5.1 83 2-88 11-102 (122)
148 TIGR02371 ala_DH_arch alanine 97.6 0.00014 3E-09 64.3 6.1 71 12-90 151-227 (325)
149 PRK09310 aroDE bifunctional 3- 97.5 0.00035 7.6E-09 65.0 8.0 92 2-108 343-437 (477)
150 PRK11861 bifunctional prephena 97.5 0.0014 3.1E-08 63.6 11.8 115 51-169 1-127 (673)
151 PF00670 AdoHcyase_NAD: S-aden 97.5 0.00031 6.7E-09 55.0 5.8 83 2-91 34-116 (162)
152 TIGR00936 ahcY adenosylhomocys 97.4 0.001 2.3E-08 60.1 9.8 91 2-99 206-297 (406)
153 COG1748 LYS9 Saccharopine dehy 97.4 0.00091 2E-08 59.9 9.2 107 2-116 12-130 (389)
154 cd05213 NAD_bind_Glutamyl_tRNA 97.4 0.00027 5.8E-09 62.1 5.7 81 2-86 189-274 (311)
155 COG2423 Predicted ornithine cy 97.4 0.00031 6.7E-09 61.7 6.0 86 15-109 156-249 (330)
156 PF03720 UDPG_MGDP_dh_C: UDP-g 97.4 0.00025 5.4E-09 51.9 4.6 81 4-87 20-103 (106)
157 PF01408 GFO_IDH_MocA: Oxidore 97.3 0.0025 5.5E-08 47.4 9.6 97 3-106 12-116 (120)
158 PF00393 6PGD: 6-phosphoglucon 97.3 0.00058 1.3E-08 58.6 6.5 96 157-259 1-106 (291)
159 PRK05476 S-adenosyl-L-homocyst 97.3 0.0012 2.6E-08 60.1 8.7 82 2-90 223-304 (425)
160 PTZ00075 Adenosylhomocysteinas 97.3 0.00073 1.6E-08 62.0 7.3 80 2-88 265-344 (476)
161 PRK06407 ornithine cyclodeamin 97.3 0.00046 9.9E-09 60.3 5.3 74 15-97 143-223 (301)
162 PRK06823 ornithine cyclodeamin 97.1 0.0009 2E-08 58.8 5.9 69 15-91 154-228 (315)
163 PLN02494 adenosylhomocysteinas 97.1 0.0022 4.7E-08 58.8 8.4 79 2-88 265-344 (477)
164 PF01488 Shikimate_DH: Shikima 97.1 0.00051 1.1E-08 52.6 3.7 59 2-60 23-88 (135)
165 PRK07340 ornithine cyclodeamin 97.1 0.0019 4.2E-08 56.5 7.4 97 2-108 136-239 (304)
166 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0013 2.8E-08 53.6 5.9 82 2-89 40-133 (194)
167 cd00401 AdoHcyase S-adenosyl-L 97.1 0.0025 5.5E-08 57.8 8.2 79 2-87 213-291 (413)
168 PRK00258 aroE shikimate 5-dehy 97.0 0.0017 3.6E-08 56.2 6.5 103 2-108 134-242 (278)
169 PRK08618 ornithine cyclodeamin 97.0 0.0024 5.1E-08 56.5 7.1 81 3-92 139-228 (325)
170 TIGR03855 NAD_NadX aspartate d 97.0 0.0049 1.1E-07 51.6 8.4 85 17-108 5-94 (229)
171 TIGR01761 thiaz-red thiazoliny 96.9 0.0069 1.5E-07 53.8 9.7 100 2-108 13-120 (343)
172 PF07479 NAD_Gly3P_dh_C: NAD-d 96.9 3.9E-05 8.4E-10 59.7 -4.3 109 155-263 21-137 (149)
173 TIGR02992 ectoine_eutC ectoine 96.9 0.0032 6.9E-08 55.7 7.1 77 3-87 141-226 (326)
174 PF02423 OCD_Mu_crystall: Orni 96.9 0.0014 3.1E-08 57.6 4.7 71 15-91 154-230 (313)
175 cd05212 NAD_bind_m-THF_DH_Cycl 96.9 0.0028 6E-08 48.8 5.7 67 13-88 27-103 (140)
176 COG0059 IlvC Ketol-acid reduct 96.8 0.004 8.6E-08 53.3 6.8 78 3-84 30-108 (338)
177 TIGR00518 alaDH alanine dehydr 96.8 0.0015 3.3E-08 58.7 4.6 83 2-86 178-268 (370)
178 PLN00203 glutamyl-tRNA reducta 96.8 0.0027 5.8E-08 59.4 6.2 58 2-59 277-341 (519)
179 PRK04148 hypothetical protein; 96.8 0.011 2.4E-07 44.9 8.4 83 3-89 28-115 (134)
180 PRK06046 alanine dehydrogenase 96.8 0.0033 7.2E-08 55.6 6.4 80 2-90 140-228 (326)
181 cd01080 NAD_bind_m-THF_DH_Cycl 96.8 0.0025 5.4E-08 50.6 5.0 63 2-87 56-118 (168)
182 PF13380 CoA_binding_2: CoA bi 96.8 0.003 6.6E-08 47.0 5.1 93 2-108 15-107 (116)
183 PRK12549 shikimate 5-dehydroge 96.8 0.0086 1.9E-07 51.9 8.6 101 2-108 138-248 (284)
184 PRK05225 ketol-acid reductoiso 96.7 0.002 4.3E-08 58.5 4.7 137 2-147 47-200 (487)
185 PRK00045 hemA glutamyl-tRNA re 96.7 0.0015 3.3E-08 59.9 3.9 83 2-86 193-281 (423)
186 PF02882 THF_DHG_CYH_C: Tetrah 96.7 0.0056 1.2E-07 48.1 6.3 42 39-89 71-112 (160)
187 PRK10669 putative cation:proto 96.5 0.013 2.8E-07 55.8 9.1 65 2-66 428-500 (558)
188 PRK14189 bifunctional 5,10-met 96.5 0.0075 1.6E-07 51.9 6.5 63 2-87 170-232 (285)
189 PRK07589 ornithine cyclodeamin 96.5 0.0049 1.1E-07 54.8 5.5 87 15-108 155-247 (346)
190 PRK00048 dihydrodipicolinate r 96.5 0.011 2.4E-07 50.4 7.5 103 2-113 13-118 (257)
191 PRK08291 ectoine utilization p 96.5 0.0094 2E-07 52.8 7.1 76 3-86 144-228 (330)
192 PRK14175 bifunctional 5,10-met 96.4 0.0081 1.7E-07 51.8 6.3 63 2-87 170-232 (286)
193 PRK06199 ornithine cyclodeamin 96.4 0.0033 7.2E-08 56.7 3.9 64 15-83 182-257 (379)
194 COG1712 Predicted dinucleotide 96.3 0.049 1.1E-06 44.8 9.8 98 2-107 11-115 (255)
195 PRK03659 glutathione-regulated 96.3 0.019 4E-07 55.2 8.6 98 2-108 411-516 (601)
196 PF03435 Saccharop_dh: Sacchar 96.3 0.0098 2.1E-07 53.9 6.4 107 2-116 9-129 (386)
197 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.01 2.2E-07 47.9 5.7 75 2-87 74-158 (197)
198 TIGR01035 hemA glutamyl-tRNA r 96.2 0.0053 1.2E-07 56.2 4.4 58 2-59 191-252 (417)
199 PF01113 DapB_N: Dihydrodipico 96.2 0.011 2.4E-07 44.5 5.3 102 2-111 12-123 (124)
200 PF02254 TrkA_N: TrkA-N domain 96.2 0.037 8.1E-07 40.7 8.1 97 2-108 9-114 (116)
201 PRK03562 glutathione-regulated 96.2 0.027 5.7E-07 54.4 9.1 103 2-114 411-522 (621)
202 PF05222 AlaDh_PNT_N: Alanine 96.2 0.053 1.1E-06 41.5 9.0 97 6-114 19-119 (136)
203 PRK10792 bifunctional 5,10-met 96.2 0.016 3.5E-07 49.8 6.8 63 2-87 171-233 (285)
204 PRK08306 dipicolinate synthase 96.2 0.01 2.2E-07 51.8 5.6 98 5-110 16-121 (296)
205 COG0673 MviM Predicted dehydro 96.2 0.047 1E-06 48.3 10.0 95 6-107 19-122 (342)
206 KOG3007|consensus 96.1 0.0091 2E-07 50.2 4.4 85 15-108 165-259 (333)
207 COG0373 HemA Glutamyl-tRNA red 96.0 0.011 2.3E-07 53.5 5.2 58 2-59 189-250 (414)
208 TIGR00873 gnd 6-phosphoglucona 96.0 0.07 1.5E-06 49.6 10.6 106 157-267 312-430 (467)
209 TIGR01763 MalateDH_bact malate 96.0 0.03 6.5E-07 49.0 7.6 56 2-58 12-80 (305)
210 PLN02516 methylenetetrahydrofo 96.0 0.022 4.7E-07 49.4 6.4 63 2-87 179-241 (299)
211 PF13460 NAD_binding_10: NADH( 95.9 0.013 2.8E-07 46.9 4.6 54 2-57 10-70 (183)
212 PRK14177 bifunctional 5,10-met 95.9 0.027 5.8E-07 48.4 6.7 64 2-88 171-234 (284)
213 PRK14170 bifunctional 5,10-met 95.9 0.027 5.8E-07 48.4 6.6 41 39-88 192-232 (284)
214 PRK14186 bifunctional 5,10-met 95.9 0.026 5.5E-07 48.9 6.5 40 39-87 193-232 (297)
215 PRK14173 bifunctional 5,10-met 95.9 0.025 5.5E-07 48.7 6.5 40 39-87 190-229 (287)
216 PRK14166 bifunctional 5,10-met 95.9 0.025 5.4E-07 48.6 6.4 40 39-87 192-231 (282)
217 COG4074 Mth H2-forming N5,N10- 95.9 0.21 4.5E-06 41.0 11.2 102 34-142 126-230 (343)
218 PRK13940 glutamyl-tRNA reducta 95.8 0.014 3E-07 53.3 4.9 59 2-60 192-255 (414)
219 PRK14172 bifunctional 5,10-met 95.8 0.031 6.7E-07 48.0 6.6 40 39-87 193-232 (278)
220 PRK09287 6-phosphogluconate de 95.8 0.045 9.8E-07 50.6 8.1 131 132-267 272-422 (459)
221 TIGR01019 sucCoAalpha succinyl 95.7 0.048 1E-06 47.2 7.7 99 2-108 18-119 (286)
222 PRK14190 bifunctional 5,10-met 95.7 0.026 5.7E-07 48.6 6.0 63 2-87 170-232 (284)
223 PRK14193 bifunctional 5,10-met 95.7 0.032 7E-07 48.0 6.5 40 39-87 195-234 (284)
224 PRK14169 bifunctional 5,10-met 95.7 0.032 7E-07 47.9 6.4 40 39-87 191-230 (282)
225 PRK05678 succinyl-CoA syntheta 95.7 0.044 9.6E-07 47.5 7.3 99 2-112 20-124 (291)
226 PRK14187 bifunctional 5,10-met 95.7 0.032 7E-07 48.2 6.3 40 39-87 195-234 (294)
227 PRK14180 bifunctional 5,10-met 95.6 0.031 6.8E-07 48.0 6.2 40 39-87 193-232 (282)
228 TIGR01921 DAP-DH diaminopimela 95.6 0.086 1.9E-06 46.3 8.9 76 2-86 14-92 (324)
229 PRK14178 bifunctional 5,10-met 95.6 0.028 6.1E-07 48.2 5.7 65 14-87 152-226 (279)
230 TIGR01809 Shik-DH-AROM shikima 95.6 0.051 1.1E-06 47.0 7.3 105 2-108 136-252 (282)
231 PRK14176 bifunctional 5,10-met 95.5 0.037 8.1E-07 47.7 6.3 63 2-87 176-238 (287)
232 PLN02819 lysine-ketoglutarate 95.5 0.076 1.7E-06 53.7 9.3 99 2-108 580-701 (1042)
233 PRK14182 bifunctional 5,10-met 95.5 0.044 9.6E-07 47.1 6.6 40 39-87 192-231 (282)
234 TIGR00036 dapB dihydrodipicoli 95.5 0.13 2.9E-06 44.0 9.6 104 2-112 13-127 (266)
235 PLN02897 tetrahydrofolate dehy 95.5 0.043 9.3E-07 48.3 6.5 40 39-87 249-288 (345)
236 PRK14171 bifunctional 5,10-met 95.5 0.045 9.7E-07 47.2 6.5 40 39-87 194-233 (288)
237 PRK14183 bifunctional 5,10-met 95.4 0.044 9.6E-07 47.1 6.4 40 39-87 192-231 (281)
238 PRK14191 bifunctional 5,10-met 95.4 0.03 6.5E-07 48.2 5.3 63 2-87 169-231 (285)
239 KOG2741|consensus 95.4 0.15 3.1E-06 44.8 9.3 90 13-109 31-129 (351)
240 PLN02616 tetrahydrofolate dehy 95.4 0.048 1E-06 48.3 6.4 40 39-87 266-305 (364)
241 COG0569 TrkA K+ transport syst 95.3 0.13 2.8E-06 43.0 8.6 63 2-65 11-83 (225)
242 PRK09496 trkA potassium transp 95.3 0.064 1.4E-06 49.6 7.5 58 2-59 11-77 (453)
243 PF01118 Semialdhyde_dh: Semia 95.3 0.02 4.2E-07 42.9 3.3 80 2-88 11-100 (121)
244 cd05297 GH4_alpha_glucosidase_ 95.2 0.033 7.1E-07 51.1 5.3 47 11-57 26-84 (423)
245 TIGR00561 pntA NAD(P) transhyd 95.2 0.063 1.4E-06 50.1 7.0 78 2-86 175-285 (511)
246 cd05191 NAD_bind_amino_acid_DH 95.2 0.054 1.2E-06 37.8 5.1 52 2-85 34-86 (86)
247 PRK14181 bifunctional 5,10-met 95.1 0.062 1.3E-06 46.3 6.2 40 39-87 192-231 (287)
248 KOG0068|consensus 95.1 0.12 2.7E-06 45.1 7.9 95 2-101 157-252 (406)
249 PRK14168 bifunctional 5,10-met 95.1 0.072 1.6E-06 46.2 6.6 40 39-87 200-239 (297)
250 TIGR02717 AcCoA-syn-alpha acet 94.9 0.12 2.6E-06 47.9 8.1 97 2-108 22-126 (447)
251 PRK12548 shikimate 5-dehydroge 94.9 0.11 2.3E-06 45.2 7.4 102 2-108 137-257 (289)
252 PRK06223 malate dehydrogenase; 94.9 0.084 1.8E-06 46.2 6.9 54 2-56 13-79 (307)
253 PRK13303 L-aspartate dehydroge 94.8 0.17 3.8E-06 43.3 8.4 108 2-116 12-127 (265)
254 cd05311 NAD_bind_2_malic_enz N 94.8 0.16 3.4E-06 42.5 7.9 97 2-108 36-149 (226)
255 cd00650 LDH_MDH_like NAD-depen 94.8 0.08 1.7E-06 45.3 6.1 54 2-55 10-78 (263)
256 PRK14185 bifunctional 5,10-met 94.8 0.09 1.9E-06 45.5 6.3 40 39-87 196-235 (293)
257 PF10728 DUF2520: Domain of un 94.8 0.47 1E-05 36.0 9.6 71 124-198 3-80 (132)
258 cd05291 HicDH_like L-2-hydroxy 94.7 0.055 1.2E-06 47.4 5.1 57 2-58 11-79 (306)
259 COG0169 AroE Shikimate 5-dehyd 94.7 0.14 3E-06 44.3 7.3 102 3-108 138-247 (283)
260 PLN02353 probable UDP-glucose 94.6 0.19 4.2E-06 46.7 8.6 96 4-108 347-464 (473)
261 PF03447 NAD_binding_3: Homose 94.6 0.076 1.6E-06 39.3 4.9 98 2-106 5-114 (117)
262 PRK14184 bifunctional 5,10-met 94.6 0.084 1.8E-06 45.5 5.7 39 39-86 196-234 (286)
263 cd01339 LDH-like_MDH L-lactate 94.6 0.16 3.4E-06 44.4 7.6 55 2-57 9-76 (300)
264 CHL00194 ycf39 Ycf39; Provisio 94.5 0.061 1.3E-06 47.3 4.8 55 2-56 12-73 (317)
265 PRK14192 bifunctional 5,10-met 94.4 0.083 1.8E-06 45.7 5.4 63 2-87 171-233 (283)
266 COG0190 FolD 5,10-methylene-te 94.4 0.14 3E-06 43.8 6.5 63 2-87 168-230 (283)
267 PRK13301 putative L-aspartate 94.3 0.38 8.2E-06 41.0 8.9 99 2-108 13-120 (267)
268 PLN03209 translocon at the inn 94.3 0.32 6.8E-06 46.2 9.2 56 2-57 92-169 (576)
269 TIGR01850 argC N-acetyl-gamma- 94.3 0.098 2.1E-06 46.7 5.7 80 2-88 12-102 (346)
270 COG1004 Ugd Predicted UDP-gluc 94.1 0.14 3E-06 45.9 6.1 74 5-84 334-407 (414)
271 COG1090 Predicted nucleoside-d 94.0 0.068 1.5E-06 45.5 3.9 53 1-53 9-62 (297)
272 PF00107 ADH_zinc_N: Zinc-bind 94.0 0.081 1.8E-06 39.7 4.1 64 2-65 2-76 (130)
273 PTZ00142 6-phosphogluconate de 94.0 0.57 1.2E-05 43.6 10.4 110 155-265 316-434 (470)
274 PRK09424 pntA NAD(P) transhydr 94.0 0.087 1.9E-06 49.3 5.0 78 2-86 176-286 (509)
275 PRK14167 bifunctional 5,10-met 94.0 0.16 3.4E-06 44.1 6.2 40 39-87 196-235 (297)
276 cd05292 LDH_2 A subgroup of L- 94.0 0.1 2.2E-06 45.8 5.1 56 2-58 11-78 (308)
277 TIGR02853 spore_dpaA dipicolin 94.0 0.42 9.1E-06 41.5 8.8 139 5-152 15-181 (287)
278 PRK14174 bifunctional 5,10-met 93.9 0.16 3.5E-06 44.0 6.1 39 40-87 199-237 (295)
279 PF01262 AlaDh_PNT_C: Alanine 93.8 0.08 1.7E-06 42.0 3.9 83 2-86 31-140 (168)
280 cd00300 LDH_like L-lactate deh 93.8 0.3 6.4E-06 42.7 7.7 56 2-58 9-77 (300)
281 PF05368 NmrA: NmrA-like famil 93.8 0.11 2.4E-06 43.3 4.9 56 2-57 10-74 (233)
282 PRK14982 acyl-ACP reductase; P 93.8 0.19 4E-06 44.6 6.3 78 2-86 167-247 (340)
283 PRK09496 trkA potassium transp 93.7 0.42 9E-06 44.2 9.0 97 2-108 242-348 (453)
284 PRK12550 shikimate 5-dehydroge 93.7 0.3 6.5E-06 42.0 7.4 100 3-108 134-237 (272)
285 PRK10206 putative oxidoreducta 93.6 0.5 1.1E-05 42.1 8.9 88 14-108 27-120 (344)
286 PTZ00117 malate dehydrogenase; 93.6 0.29 6.2E-06 43.2 7.3 53 2-55 16-81 (319)
287 PRK00436 argC N-acetyl-gamma-g 93.5 0.15 3.2E-06 45.5 5.4 81 2-90 14-104 (343)
288 cd05211 NAD_bind_Glu_Leu_Phe_V 93.0 3.3 7.2E-05 34.3 12.4 160 2-196 34-211 (217)
289 PRK06718 precorrin-2 dehydroge 93.0 0.69 1.5E-05 37.9 8.2 58 2-59 21-82 (202)
290 KOG1502|consensus 93.0 0.14 3.1E-06 44.8 4.3 54 2-55 18-86 (327)
291 cd05294 LDH-like_MDH_nadp A la 93.0 0.14 3.1E-06 44.9 4.4 55 2-57 12-82 (309)
292 TIGR01777 yfcH conserved hypot 92.9 0.12 2.6E-06 44.4 3.8 55 2-56 10-66 (292)
293 COG0300 DltE Short-chain dehyd 92.9 0.31 6.8E-06 41.6 6.1 75 2-86 18-93 (265)
294 KOG1200|consensus 92.7 0.48 1E-05 38.4 6.6 78 2-91 26-104 (256)
295 COG0499 SAM1 S-adenosylhomocys 92.7 0.25 5.5E-06 43.6 5.4 79 2-87 220-298 (420)
296 PRK06182 short chain dehydroge 92.6 0.49 1.1E-05 40.4 7.2 70 2-87 15-84 (273)
297 TIGR03649 ergot_EASG ergot alk 92.5 0.64 1.4E-05 40.0 7.8 56 2-57 11-77 (285)
298 COG4221 Short-chain alcohol de 92.4 0.49 1.1E-05 39.7 6.5 76 2-89 18-93 (246)
299 PRK14027 quinate/shikimate deh 92.4 1.1 2.5E-05 38.7 9.1 100 3-108 139-250 (283)
300 PRK01710 murD UDP-N-acetylmura 92.3 1.5 3.2E-05 40.8 10.4 54 2-55 25-85 (458)
301 PRK12749 quinate/shikimate deh 92.2 0.64 1.4E-05 40.4 7.4 99 3-108 136-254 (288)
302 PRK06200 2,3-dihydroxy-2,3-dih 92.1 0.53 1.2E-05 39.9 6.8 73 2-87 18-90 (263)
303 PRK06349 homoserine dehydrogen 92.0 1.3 2.8E-05 40.8 9.5 100 2-107 14-127 (426)
304 COG0002 ArgC Acetylglutamate s 92.0 0.46 9.9E-06 41.9 6.1 134 3-143 15-167 (349)
305 PLN02383 aspartate semialdehyd 91.9 0.18 3.9E-06 44.9 3.7 79 2-87 19-102 (344)
306 PRK11579 putative oxidoreducta 91.7 1 2.3E-05 40.1 8.5 85 14-107 29-119 (346)
307 PRK06180 short chain dehydroge 91.7 0.58 1.3E-05 40.1 6.6 73 2-87 16-88 (277)
308 COG0686 Ald Alanine dehydrogen 91.5 0.24 5.2E-06 42.9 3.8 81 2-85 179-268 (371)
309 PRK05693 short chain dehydroge 91.5 0.82 1.8E-05 39.0 7.3 70 2-87 13-82 (274)
310 PLN02968 Probable N-acetyl-gam 91.4 0.32 7E-06 44.0 4.9 79 2-88 50-137 (381)
311 cd01483 E1_enzyme_family Super 91.3 1.3 2.7E-05 33.9 7.5 104 2-113 10-124 (143)
312 PRK03369 murD UDP-N-acetylmura 91.2 1.8 3.8E-05 40.7 9.6 56 2-57 23-80 (488)
313 COG2910 Putative NADH-flavin r 91.1 0.25 5.5E-06 39.5 3.4 56 2-57 12-72 (211)
314 PRK02472 murD UDP-N-acetylmura 90.8 3.6 7.7E-05 38.0 11.2 54 2-55 16-76 (447)
315 PRK06139 short chain dehydroge 90.7 0.86 1.9E-05 40.4 6.8 75 2-86 19-93 (330)
316 PRK08265 short chain dehydroge 90.6 0.81 1.8E-05 38.8 6.4 72 2-86 18-89 (261)
317 PRK12828 short chain dehydroge 90.6 1.3 2.7E-05 36.6 7.5 74 2-87 19-92 (239)
318 TIGR03215 ac_ald_DH_ac acetald 90.6 1.1 2.4E-05 38.8 7.1 80 2-88 12-98 (285)
319 PRK12429 3-hydroxybutyrate deh 90.6 0.76 1.6E-05 38.6 6.2 75 2-86 16-90 (258)
320 PLN02520 bifunctional 3-dehydr 90.5 1.7 3.7E-05 41.2 8.9 102 2-108 390-496 (529)
321 PRK08213 gluconate 5-dehydroge 90.5 0.79 1.7E-05 38.7 6.2 76 2-87 24-99 (259)
322 PRK07890 short chain dehydroge 90.4 0.89 1.9E-05 38.2 6.5 76 2-87 17-92 (258)
323 KOG1014|consensus 90.4 0.35 7.6E-06 41.8 3.9 32 2-33 61-92 (312)
324 PRK05568 flavodoxin; Provision 90.4 6.3 0.00014 29.9 11.4 108 5-144 21-139 (142)
325 PF00056 Ldh_1_N: lactate/mala 90.3 0.31 6.8E-06 37.5 3.2 56 2-57 12-79 (141)
326 PRK00066 ldh L-lactate dehydro 90.2 1.2 2.7E-05 39.1 7.3 56 2-57 17-83 (315)
327 TIGR01851 argC_other N-acetyl- 90.2 0.88 1.9E-05 39.8 6.2 70 2-87 13-82 (310)
328 PRK07825 short chain dehydroge 90.2 1 2.2E-05 38.4 6.6 71 2-86 17-87 (273)
329 PRK05866 short chain dehydroge 90.1 0.96 2.1E-05 39.2 6.5 76 2-87 52-127 (293)
330 PF13561 adh_short_C2: Enoyl-( 90.1 0.38 8.2E-06 40.3 3.9 72 2-88 8-84 (241)
331 cd01076 NAD_bind_1_Glu_DH NAD( 90.0 1.5 3.2E-05 36.7 7.2 97 2-109 42-158 (227)
332 PRK07024 short chain dehydroge 90.0 1.1 2.4E-05 37.8 6.6 75 2-87 14-88 (257)
333 PRK05867 short chain dehydroge 89.9 0.85 1.8E-05 38.4 5.9 76 2-87 21-96 (253)
334 PRK07067 sorbitol dehydrogenas 89.9 1.1 2.3E-05 37.8 6.5 72 2-86 18-89 (257)
335 TIGR01470 cysG_Nterm siroheme 89.9 2.7 5.9E-05 34.5 8.6 100 2-101 20-142 (205)
336 PRK07109 short chain dehydroge 89.8 0.96 2.1E-05 40.1 6.4 76 2-87 20-95 (334)
337 PRK06124 gluconate 5-dehydroge 89.8 1.2 2.6E-05 37.5 6.7 75 2-86 23-97 (256)
338 PF04016 DUF364: Domain of unk 89.7 0.077 1.7E-06 41.2 -0.6 91 5-108 22-114 (147)
339 COG3967 DltE Short-chain dehyd 89.7 1 2.2E-05 36.9 5.7 72 2-87 17-88 (245)
340 PRK08862 short chain dehydroge 89.6 1.2 2.6E-05 37.0 6.5 75 2-86 17-92 (227)
341 PRK07814 short chain dehydroge 89.6 1 2.2E-05 38.2 6.2 75 2-86 22-96 (263)
342 PRK07478 short chain dehydroge 89.5 1.1 2.4E-05 37.7 6.3 76 2-87 18-93 (254)
343 PRK14106 murD UDP-N-acetylmura 89.5 1.4 3.1E-05 40.6 7.6 56 2-57 16-78 (450)
344 PRK08300 acetaldehyde dehydrog 89.5 1.7 3.8E-05 37.8 7.5 80 2-88 15-104 (302)
345 TIGR03325 BphB_TodD cis-2,3-di 89.5 1.1 2.5E-05 37.8 6.4 31 2-32 17-47 (262)
346 PRK10538 malonic semialdehyde 89.4 1.2 2.5E-05 37.4 6.4 72 2-86 12-83 (248)
347 PRK07074 short chain dehydroge 89.4 1.4 3E-05 37.1 6.9 74 2-87 14-87 (257)
348 PRK07454 short chain dehydroge 89.4 1.2 2.6E-05 37.1 6.4 76 2-87 18-93 (241)
349 COG2227 UbiG 2-polyprenyl-3-me 89.4 2.1 4.6E-05 35.8 7.5 79 3-88 70-163 (243)
350 PRK14874 aspartate-semialdehyd 89.4 0.41 8.9E-06 42.5 3.7 79 2-87 13-96 (334)
351 PRK05993 short chain dehydroge 89.3 1.3 2.7E-05 38.0 6.6 52 2-66 16-67 (277)
352 PRK00683 murD UDP-N-acetylmura 89.3 0.55 1.2E-05 43.1 4.5 57 2-58 14-70 (418)
353 PRK08643 acetoin reductase; Va 89.1 1.2 2.6E-05 37.5 6.2 76 2-87 14-89 (256)
354 PRK06270 homoserine dehydrogen 89.0 4.6 0.0001 36.0 10.1 99 2-107 13-148 (341)
355 PRK13394 3-hydroxybutyrate deh 89.0 1.2 2.5E-05 37.5 6.1 76 2-87 19-94 (262)
356 PRK05872 short chain dehydroge 89.0 1.7 3.6E-05 37.7 7.2 72 2-87 21-95 (296)
357 PRK05653 fabG 3-ketoacyl-(acyl 88.9 1.4 3E-05 36.5 6.5 74 2-87 17-92 (246)
358 TIGR03026 NDP-sugDHase nucleot 88.9 1.1 2.5E-05 40.9 6.3 74 4-84 336-409 (411)
359 PTZ00082 L-lactate dehydrogena 88.9 1.6 3.5E-05 38.5 7.0 53 2-55 17-82 (321)
360 PRK12829 short chain dehydroge 88.8 1.4 2.9E-05 37.2 6.4 75 2-88 23-97 (264)
361 PRK06196 oxidoreductase; Provi 88.8 1.3 2.9E-05 38.7 6.5 71 2-86 38-108 (315)
362 PRK07523 gluconate 5-dehydroge 88.6 1.4 3E-05 37.1 6.3 76 2-87 22-97 (255)
363 PRK08340 glucose-1-dehydrogena 88.5 1.3 2.9E-05 37.4 6.1 74 2-86 12-85 (259)
364 PRK08267 short chain dehydroge 88.5 1.6 3.5E-05 36.8 6.6 74 2-87 13-87 (260)
365 PTZ00187 succinyl-CoA syntheta 88.4 3.7 8.1E-05 36.1 8.8 97 3-107 42-144 (317)
366 PRK05876 short chain dehydroge 88.4 1.4 3.1E-05 37.7 6.3 76 2-87 18-93 (275)
367 PRK07063 short chain dehydroge 88.4 1.4 3E-05 37.2 6.2 78 2-87 19-96 (260)
368 TIGR01296 asd_B aspartate-semi 88.4 0.37 8.1E-06 42.9 2.7 78 2-86 11-93 (339)
369 PRK06179 short chain dehydroge 88.4 1.1 2.3E-05 38.1 5.5 68 2-87 16-83 (270)
370 TIGR02415 23BDH acetoin reduct 88.3 1.4 3.1E-05 36.9 6.2 76 2-87 12-87 (254)
371 PRK06482 short chain dehydroge 88.2 1.7 3.7E-05 37.1 6.7 73 2-87 14-86 (276)
372 COG1064 AdhP Zn-dependent alco 88.2 1.4 3E-05 39.0 6.1 59 7-66 182-247 (339)
373 PRK01045 ispH 4-hydroxy-3-meth 88.2 4.7 0.0001 35.2 9.2 87 12-107 28-117 (298)
374 PRK07062 short chain dehydroge 88.1 1.4 3E-05 37.3 6.1 76 2-87 20-97 (265)
375 TIGR03206 benzo_BadH 2-hydroxy 88.1 1.6 3.4E-05 36.5 6.3 76 2-87 15-90 (250)
376 PRK01390 murD UDP-N-acetylmura 88.1 1.2 2.5E-05 41.5 5.9 53 2-54 20-72 (460)
377 TIGR03366 HpnZ_proposed putati 87.9 3.2 7E-05 35.6 8.3 35 2-36 132-167 (280)
378 TIGR02354 thiF_fam2 thiamine b 87.9 1.3 2.8E-05 36.2 5.4 22 2-23 32-54 (200)
379 TIGR03466 HpnA hopanoid-associ 87.9 0.5 1.1E-05 41.3 3.2 55 2-56 12-73 (328)
380 COG0771 MurD UDP-N-acetylmuram 87.8 2.6 5.6E-05 38.9 7.7 114 3-116 19-149 (448)
381 PRK12939 short chain dehydroge 87.7 1.6 3.4E-05 36.4 6.1 76 2-87 19-94 (250)
382 TIGR01082 murC UDP-N-acetylmur 87.7 3.7 8E-05 38.0 9.0 53 3-55 11-66 (448)
383 PRK07326 short chain dehydroge 87.7 1.8 3.8E-05 35.9 6.3 74 2-86 18-91 (237)
384 PRK06720 hypothetical protein; 87.7 2 4.3E-05 34.1 6.2 29 2-30 28-56 (169)
385 TIGR01963 PHB_DH 3-hydroxybuty 87.6 1.7 3.7E-05 36.3 6.3 75 2-86 13-87 (255)
386 PRK09186 flagellin modificatio 87.5 1.7 3.6E-05 36.5 6.2 76 2-85 16-91 (256)
387 PF03848 TehB: Tellurite resis 87.5 0.4 8.7E-06 38.9 2.2 71 7-80 45-128 (192)
388 PRK05569 flavodoxin; Provision 87.4 11 0.00023 28.6 12.5 84 44-144 45-139 (141)
389 PRK08309 short chain dehydroge 87.4 2.6 5.6E-05 33.8 6.7 91 2-105 11-101 (177)
390 PRK06101 short chain dehydroge 87.3 1.8 3.9E-05 36.1 6.1 55 2-67 13-67 (240)
391 PRK06057 short chain dehydroge 87.3 2.6 5.6E-05 35.4 7.2 70 2-86 19-88 (255)
392 PRK06138 short chain dehydroge 87.2 1.6 3.4E-05 36.5 5.8 75 2-87 17-91 (252)
393 PRK08085 gluconate 5-dehydroge 87.2 2 4.3E-05 36.1 6.4 29 2-30 21-49 (254)
394 PRK08589 short chain dehydroge 87.1 2.1 4.5E-05 36.5 6.5 75 2-87 18-92 (272)
395 PRK06719 precorrin-2 dehydroge 87.1 3.3 7.2E-05 32.4 7.1 97 2-101 24-142 (157)
396 PRK09424 pntA NAD(P) transhydr 87.1 2.6 5.7E-05 39.6 7.5 90 6-109 22-115 (509)
397 PRK12360 4-hydroxy-3-methylbut 87.1 7.1 0.00015 33.7 9.6 85 14-107 31-120 (281)
398 PRK07035 short chain dehydroge 87.0 1.9 4.1E-05 36.2 6.1 76 2-87 20-95 (252)
399 PRK08263 short chain dehydroge 87.0 2.1 4.7E-05 36.5 6.6 73 2-87 15-87 (275)
400 PRK06194 hypothetical protein; 86.8 1.9 4.2E-05 36.9 6.2 74 2-87 18-93 (287)
401 PRK03803 murD UDP-N-acetylmura 86.8 3.6 7.8E-05 38.0 8.4 114 2-115 17-146 (448)
402 PRK00141 murD UDP-N-acetylmura 86.5 4.7 0.0001 37.7 9.0 54 2-55 26-82 (473)
403 PRK11863 N-acetyl-gamma-glutam 86.5 1.2 2.7E-05 39.0 4.8 69 2-87 14-83 (313)
404 PRK07774 short chain dehydroge 86.5 2.1 4.5E-05 35.7 6.1 76 2-87 18-93 (250)
405 PLN00016 RNA-binding protein; 86.4 4.7 0.0001 36.3 8.7 25 2-26 68-92 (378)
406 PRK07677 short chain dehydroge 86.4 2.3 5E-05 35.7 6.4 73 2-86 13-87 (252)
407 PF10100 DUF2338: Uncharacteri 86.3 26 0.00056 31.9 18.5 255 5-267 15-394 (429)
408 PRK04207 glyceraldehyde-3-phos 86.2 2.6 5.6E-05 37.6 6.8 79 2-87 12-111 (341)
409 PRK07231 fabG 3-ketoacyl-(acyl 86.2 1.8 4E-05 36.0 5.7 73 2-87 17-91 (251)
410 PLN02253 xanthoxin dehydrogena 86.1 2 4.4E-05 36.6 6.0 74 2-86 30-103 (280)
411 PRK08277 D-mannonate oxidoredu 86.1 1.9 4.1E-05 36.8 5.8 30 2-31 22-51 (278)
412 PRK06172 short chain dehydroge 86.1 2.7 5.8E-05 35.2 6.6 30 2-31 19-48 (253)
413 TIGR02356 adenyl_thiF thiazole 86.0 2.7 5.8E-05 34.4 6.3 104 2-113 32-146 (202)
414 PRK07856 short chain dehydroge 86.0 1.8 3.8E-05 36.4 5.5 25 2-26 18-42 (252)
415 PRK00421 murC UDP-N-acetylmura 86.0 2.3 5E-05 39.5 6.7 54 2-55 18-74 (461)
416 TIGR01832 kduD 2-deoxy-D-gluco 85.9 2.9 6.3E-05 34.9 6.7 72 2-87 17-90 (248)
417 PLN02662 cinnamyl-alcohol dehy 85.9 1.7 3.6E-05 38.0 5.5 55 2-56 16-85 (322)
418 PLN00141 Tic62-NAD(P)-related 85.9 1.4 3E-05 37.2 4.8 29 2-30 29-57 (251)
419 PLN02650 dihydroflavonol-4-red 85.8 1.6 3.6E-05 38.7 5.4 54 2-55 17-85 (351)
420 PRK07984 enoyl-(acyl carrier p 85.8 2.8 6E-05 35.7 6.6 73 2-88 20-95 (262)
421 PRK08177 short chain dehydroge 85.8 1.5 3.1E-05 36.2 4.7 30 2-31 13-42 (225)
422 PRK06949 short chain dehydroge 85.7 3 6.5E-05 35.0 6.8 30 2-31 21-50 (258)
423 cd05293 LDH_1 A subgroup of L- 85.7 1.6 3.6E-05 38.3 5.2 55 2-57 14-81 (312)
424 TIGR01081 mpl UDP-N-acetylmura 85.7 1.8 4E-05 40.0 5.8 52 4-55 13-68 (448)
425 PLN02780 ketoreductase/ oxidor 85.4 0.91 2E-05 40.0 3.5 30 2-31 65-94 (320)
426 COG0761 lytB 4-Hydroxy-3-methy 85.4 8.7 0.00019 33.1 9.0 89 10-107 27-118 (294)
427 PRK06500 short chain dehydroge 85.1 3.1 6.7E-05 34.6 6.5 30 2-31 18-47 (249)
428 COG1063 Tdh Threonine dehydrog 85.0 3.8 8.2E-05 36.6 7.3 82 2-90 180-274 (350)
429 PRK05875 short chain dehydroge 85.0 1.7 3.8E-05 37.0 5.0 30 2-31 19-48 (276)
430 PRK05472 redox-sensing transcr 85.0 0.79 1.7E-05 37.8 2.7 57 2-59 95-158 (213)
431 PRK10569 NAD(P)H-dependent FMN 84.9 10 0.00022 30.8 9.1 135 5-145 22-169 (191)
432 cd08230 glucose_DH Glucose deh 84.8 3.8 8.3E-05 36.4 7.3 36 2-37 184-222 (355)
433 TIGR00561 pntA NAD(P) transhyd 84.7 4.8 0.0001 37.9 7.9 90 6-109 21-114 (511)
434 PRK05854 short chain dehydroge 84.6 2.4 5.2E-05 37.2 5.8 30 2-31 26-55 (313)
435 PRK06398 aldose dehydrogenase; 84.6 1.8 4E-05 36.5 4.9 24 2-25 18-41 (258)
436 PRK15057 UDP-glucose 6-dehydro 84.6 2.4 5.2E-05 38.5 5.9 58 4-65 319-376 (388)
437 TIGR01771 L-LDH-NAD L-lactate 84.5 2 4.4E-05 37.5 5.2 56 2-57 7-74 (299)
438 PRK08251 short chain dehydroge 84.3 2.8 6.1E-05 35.0 5.9 30 2-31 14-43 (248)
439 PRK05884 short chain dehydroge 84.3 2.7 5.8E-05 34.7 5.7 31 2-32 12-42 (223)
440 COG0451 WcaG Nucleoside-diphos 84.2 0.96 2.1E-05 39.2 3.1 55 2-56 12-73 (314)
441 PRK09880 L-idonate 5-dehydroge 84.1 5.3 0.00011 35.3 7.9 35 2-36 181-216 (343)
442 PRK05717 oxidoreductase; Valid 84.1 3.5 7.6E-05 34.6 6.4 73 2-87 22-94 (255)
443 PLN02989 cinnamyl-alcohol dehy 84.1 2 4.4E-05 37.6 5.1 55 2-56 17-86 (325)
444 PRK12384 sorbitol-6-phosphate 84.0 2.6 5.5E-05 35.5 5.6 75 2-86 14-90 (259)
445 PRK06914 short chain dehydroge 84.0 2.7 5.9E-05 35.8 5.8 30 2-31 15-44 (280)
446 COG0074 SucD Succinyl-CoA synt 83.9 4.5 9.7E-05 34.7 6.7 99 2-107 20-120 (293)
447 PRK06505 enoyl-(acyl carrier p 83.9 4.3 9.3E-05 34.7 6.9 24 2-25 21-44 (271)
448 PRK06079 enoyl-(acyl carrier p 83.9 3.7 8E-05 34.5 6.5 73 2-87 21-93 (252)
449 PRK07097 gluconate 5-dehydroge 83.9 4.1 8.9E-05 34.5 6.8 75 2-86 22-96 (265)
450 PRK09242 tropinone reductase; 83.8 1.3 2.8E-05 37.3 3.6 76 2-87 21-98 (257)
451 PRK07832 short chain dehydroge 83.8 3.5 7.6E-05 35.0 6.4 76 2-87 12-88 (272)
452 TIGR00216 ispH_lytB (E)-4-hydr 83.8 11 0.00025 32.5 9.3 87 12-107 27-117 (280)
453 PRK05671 aspartate-semialdehyd 83.7 1 2.3E-05 40.0 3.1 78 2-88 16-100 (336)
454 PRK07060 short chain dehydroge 83.7 5.8 0.00013 32.9 7.5 31 2-32 21-51 (245)
455 PRK06484 short chain dehydroge 83.6 2.9 6.2E-05 39.4 6.2 72 2-87 281-353 (520)
456 PLN02686 cinnamoyl-CoA reducta 83.6 1.8 3.9E-05 38.9 4.7 29 2-30 65-93 (367)
457 KOG4230|consensus 83.4 2.5 5.4E-05 39.9 5.3 40 39-87 197-236 (935)
458 PRK05855 short chain dehydroge 83.4 2.5 5.4E-05 40.1 5.8 76 2-87 327-402 (582)
459 PRK07533 enoyl-(acyl carrier p 83.4 4.6 0.0001 34.1 6.9 25 2-26 24-48 (258)
460 PRK07453 protochlorophyllide o 83.4 3 6.4E-05 36.6 5.9 75 2-86 18-92 (322)
461 PF02056 Glyco_hydro_4: Family 83.2 1.2 2.6E-05 35.8 3.0 44 15-58 29-84 (183)
462 PRK08339 short chain dehydroge 83.2 1.5 3.2E-05 37.3 3.7 30 2-31 20-49 (263)
463 PLN02986 cinnamyl-alcohol dehy 83.2 2.6 5.7E-05 36.8 5.5 55 2-56 17-86 (322)
464 PRK05086 malate dehydrogenase; 83.2 3.7 8E-05 36.1 6.3 56 2-57 12-79 (312)
465 PRK12936 3-ketoacyl-(acyl-carr 83.2 4.7 0.0001 33.4 6.8 73 2-87 18-90 (245)
466 PRK11064 wecC UDP-N-acetyl-D-m 82.9 2.4 5.2E-05 38.9 5.2 58 4-63 343-401 (415)
467 PRK07688 thiamine/molybdopteri 82.9 4.8 0.0001 35.8 7.0 104 2-113 35-151 (339)
468 PRK07666 fabG 3-ketoacyl-(acyl 82.8 4 8.7E-05 33.8 6.2 29 2-30 19-47 (239)
469 PLN02427 UDP-apiose/xylose syn 82.8 1.8 3.8E-05 39.1 4.3 54 2-55 26-94 (386)
470 PRK06197 short chain dehydroge 82.8 2.9 6.2E-05 36.4 5.5 29 2-30 28-56 (306)
471 PRK06841 short chain dehydroge 82.8 4.4 9.6E-05 33.9 6.5 73 2-87 27-99 (255)
472 PRK07889 enoyl-(acyl carrier p 82.7 4.8 0.0001 34.0 6.7 73 2-87 21-95 (256)
473 PRK06935 2-deoxy-D-gluconate 3 82.7 4.1 8.8E-05 34.3 6.3 74 2-86 27-100 (258)
474 PRK06703 flavodoxin; Provision 82.6 12 0.00026 28.8 8.4 88 4-109 20-119 (151)
475 PRK08017 oxidoreductase; Provi 82.6 1.6 3.5E-05 36.6 3.8 31 2-32 14-44 (256)
476 PRK06756 flavodoxin; Provision 82.6 20 0.00042 27.5 11.7 87 44-145 46-144 (148)
477 cd05188 MDR Medium chain reduc 82.5 8.3 0.00018 32.2 8.2 34 2-35 146-179 (271)
478 cd01487 E1_ThiF_like E1_ThiF_l 82.5 5.5 0.00012 31.7 6.6 101 2-110 10-121 (174)
479 cd01336 MDH_cytoplasmic_cytoso 82.5 3.9 8.3E-05 36.2 6.2 56 2-57 14-88 (325)
480 PRK09072 short chain dehydroge 82.4 4.9 0.00011 33.9 6.7 74 2-87 17-90 (263)
481 PRK06463 fabG 3-ketoacyl-(acyl 82.2 6.1 0.00013 33.1 7.2 70 2-87 19-89 (255)
482 COG0702 Predicted nucleoside-d 82.2 2.4 5.3E-05 35.8 4.8 54 2-56 12-72 (275)
483 PRK10537 voltage-gated potassi 82.2 7.5 0.00016 35.4 8.0 97 2-110 251-356 (393)
484 PRK08415 enoyl-(acyl carrier p 82.1 5.5 0.00012 34.1 6.9 72 2-87 19-93 (274)
485 PRK12743 oxidoreductase; Provi 82.1 4.6 0.0001 33.9 6.4 76 2-87 14-90 (256)
486 PRK06181 short chain dehydroge 82.0 4.6 0.0001 34.0 6.4 29 2-30 13-41 (263)
487 PRK12826 3-ketoacyl-(acyl-carr 82.0 4 8.7E-05 33.9 5.9 29 2-30 18-46 (251)
488 TIGR01087 murD UDP-N-acetylmur 81.8 5.8 0.00013 36.5 7.4 114 2-115 10-140 (433)
489 PRK06114 short chain dehydroge 81.7 5.2 0.00011 33.6 6.5 76 2-87 20-96 (254)
490 PRK05650 short chain dehydroge 81.6 5.2 0.00011 33.9 6.6 30 2-31 12-41 (270)
491 TIGR00477 tehB tellurite resis 81.5 4.2 9.1E-05 33.0 5.7 25 6-30 44-68 (195)
492 TIGR00715 precor6x_red precorr 81.5 7.5 0.00016 33.1 7.3 159 3-192 12-177 (256)
493 PRK07831 short chain dehydroge 81.3 4 8.7E-05 34.4 5.8 29 2-30 30-58 (262)
494 PRK06483 dihydromonapterin red 81.3 5.8 0.00012 32.8 6.6 25 2-26 14-38 (236)
495 cd00704 MDH Malate dehydrogena 81.2 2.1 4.6E-05 37.8 4.0 56 2-57 12-86 (323)
496 PRK09291 short chain dehydroge 81.2 2.8 6.1E-05 35.1 4.8 30 2-31 14-43 (257)
497 PLN02214 cinnamoyl-CoA reducta 81.1 2.2 4.7E-05 37.9 4.2 55 2-56 22-90 (342)
498 PF14748 P5CR_dimer: Pyrroline 81.0 0.89 1.9E-05 33.2 1.4 89 165-267 17-106 (107)
499 PF08546 ApbA_C: Ketopantoate 81.0 6 0.00013 29.3 6.0 85 168-264 37-123 (125)
500 PRK01438 murD UDP-N-acetylmura 80.9 10 0.00022 35.4 8.7 55 2-56 27-87 (480)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=3.1e-65 Score=431.12 Aligned_cols=276 Identities=38% Similarity=0.625 Sum_probs=266.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.||.+||.||.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||+++++++|+++++|+.+.+++|+
T Consensus 10 ~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~ 89 (286)
T COG2084 10 IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGA 89 (286)
T ss_pred hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCC
Confidence 39999999999999999999999999 66666779999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
+||||||++|..++++++.++++|..|+|+||+|++..+.+|++++|+||+++.|++++|+|+.++++++|+|+.|+|+.
T Consensus 90 i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~ 169 (286)
T COG2084 90 IVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQA 169 (286)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK 239 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~ 239 (286)
+|++||++..+++.+++|++.+++++|+|++.++++++.++++||.++++.+ ++.+++|+|+|.++++.||++
T Consensus 170 ~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~F~v~~~~KDl~ 242 (286)
T COG2084 170 AKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPGFAVDLMLKDLG 242 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764 345899999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 240 LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 240 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
++.+++++.|+++|++..+.++|+.+.+.|+|++|++++++.++
T Consensus 243 la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 243 LALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999875
No 2
>KOG0409|consensus
Probab=100.00 E-value=1.4e-61 Score=400.76 Aligned_cols=277 Identities=40% Similarity=0.668 Sum_probs=266.2
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||+.|+.||+++||+|+||||+.+++++|.+.|++++++|.|+++.||+||+|||++.++++++.+..|+++.+++|+.
T Consensus 45 ~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~ 124 (327)
T KOG0409|consen 45 NMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKK 124 (327)
T ss_pred cchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred E-EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 81 V-IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 81 v-id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
. ||+||++|.+++++++.+..++.+|+|+||+|+...++.|+|+||+|||++.++++.++|+.+|++++|+|..|.|++
T Consensus 125 ~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~ 204 (327)
T KOG0409|consen 125 ATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQA 204 (327)
T ss_pred eEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK 239 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~ 239 (286)
+|++||++.+.++.+++|++.|+.++|+|+.+++++++.+.+.|+.. +.|+|++. +++|.|+|.++++.||++
T Consensus 205 ~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~--~~~~p~m~-----k~dy~p~f~~~~m~KDLg 277 (327)
T KOG0409|consen 205 AKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF--YNPVPGML-----KGDYNPGFALKLMVKDLG 277 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH--hCcCchhh-----cCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777765 45666654 789999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 240 LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 240 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
++.+.+++.+.|+|+...++|+|+.+.+.|+|+.|++++++.++.
T Consensus 278 la~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~ 322 (327)
T KOG0409|consen 278 LALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRR 322 (327)
T ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 3
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=6.9e-56 Score=384.20 Aligned_cols=283 Identities=49% Similarity=0.795 Sum_probs=268.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.++|++|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||+++++++++.+.+++.+.+++|++
T Consensus 6 ~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~ 85 (288)
T TIGR01692 6 NMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSL 85 (288)
T ss_pred HhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCE
Confidence 38999999999999999999999999999999999889999999999999999999988999999776678888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||++|.+++++.+.+.++|+.|+|+||+|++..+..|++++|+||+++.+++++++|+.++++++|+|+.|+|+++
T Consensus 86 vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 86 LIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||....+.+.+.+....+.+++|.++|++.++.||+++
T Consensus 166 Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~ 245 (288)
T TIGR01692 166 KICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGL 245 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999887777766665555567999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
+.+++++.|+++|+.+.+.++|+.+.++|+|++|+++++++++
T Consensus 246 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 288 (288)
T TIGR01692 246 AQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288 (288)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence 9999999999999999999999999999999999999999863
No 4
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=5.4e-56 Score=384.07 Aligned_cols=277 Identities=26% Similarity=0.393 Sum_probs=261.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++.++++++.+++|+.+.+.+|++
T Consensus 10 ~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~i 88 (292)
T PRK15059 10 IMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKT 88 (292)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCE
Confidence 3899999999999999999999975 577777899889999999999999999999999999999887788888889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||++|.+++++++.+.++|+.|+|+||+|++..++.|++.+|+||+++.+++++|+|+.++++++|+|+.|+|+.+
T Consensus 89 vvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~ 168 (292)
T PRK15059 89 IVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTC 168 (292)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.+ ++.+++|.++|+++++.||+++
T Consensus 169 Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~l~~~~KDl~l 241 (292)
T PRK15059 169 KVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGFKIALHQKDLNL 241 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999998888998876654 3357899999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+.++++|+.+.+.|+|++|++++++++++.
T Consensus 242 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 242 ALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998753
No 5
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=2.8e-54 Score=374.94 Aligned_cols=278 Identities=29% Similarity=0.384 Sum_probs=260.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+++|.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++.+.+++.+.+++|++
T Consensus 11 ~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~l 90 (296)
T PRK15461 11 QMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDAL 90 (296)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCE
Confidence 38999999999999999999999999999998899899999999999999999999988899999887788888889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
+||+||+.|.+++++.+.+.++|+.|+|+||+|++..+..|++++|+||+++.+++++|+|+.+|.+++|+|+.|+|+++
T Consensus 91 vid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~ 170 (296)
T PRK15461 91 VIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRV 170 (296)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++...++.+++|++.+++++|+|++.++++++.+...++.+..+.+ +++.+++|.++|+++++.||+++
T Consensus 171 Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~KD~~l 244 (296)
T PRK15461 171 KLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP------NKVLKGDLSPAFMIDLAHKDLGI 244 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcccc------chhccCCCCCCcchHHHHhhHHH
Confidence 999999999999999999999999999999999999988766665443221 23457899999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.+++++.|+++|+.+.++++|+.+.+.|+|++|++++++++++
T Consensus 245 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 245 ALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
No 6
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.1e-51 Score=413.99 Aligned_cols=277 Identities=22% Similarity=0.335 Sum_probs=264.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||+||+++||+|++|||++++++++.+.|+..++|+.|++++||+||+|||+++++++|+++.+|+.+.+++|++
T Consensus 14 ~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~i 93 (1378)
T PLN02858 14 SLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAV 93 (1378)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCE
Confidence 38999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcC--CceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEec-CCcchH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQ--ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHC-GDSGNG 157 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g--~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~-g~~g~a 157 (286)
||||||++|.+++++++.+.++| +.|+|+||+|++..++.|++++|+||+++.+++++|+|+.+|++++|+ |+.|+|
T Consensus 94 ivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g 173 (1378)
T PLN02858 94 ILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAG 173 (1378)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHh
Confidence 99999999999999999999999 899999999999999999999999999999999999999999998865 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHH
Q psy764 158 QVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKD 237 (286)
Q Consensus 158 ~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd 237 (286)
+++|+++|++.+.++.+++|++.+++++|+|++.++++++.+++.||.++.+.+ ++.+++|.++|+++++.||
T Consensus 174 ~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~~F~l~l~~KD 246 (1378)
T PLN02858 174 SKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIEGRFLNVLVQN 246 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCCCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999998876543 2347899999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 238 MKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 238 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
++++.++|++.|+++|+.+.++++|+.+.+.|+|++|++++++++++
T Consensus 247 l~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 247 LGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=8.8e-50 Score=346.87 Aligned_cols=278 Identities=28% Similarity=0.453 Sum_probs=260.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.++|.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.+++.++...+++.+.+++|++
T Consensus 9 ~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~i 88 (291)
T TIGR01505 9 IMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKT 88 (291)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCE
Confidence 38999999999999999999999999999998898888899999999999999999988999998765567777889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||+.|.+++++.+.+.++|++|+++|++|++..+..+++.+++||+++.+++++++|+.++.+++++|+.|.|+.+
T Consensus 89 ivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~ 168 (291)
T TIGR01505 89 LVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTC 168 (291)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+.+ .+.+++|.++|+++++.||+++
T Consensus 169 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~ 241 (291)
T TIGR01505 169 KVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGFRIDLHQKDLNL 241 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998888887665433 2347889999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++.
T Consensus 242 ~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 242 ALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998763
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=5.7e-49 Score=342.73 Aligned_cols=277 Identities=31% Similarity=0.487 Sum_probs=259.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|.+|++.|++|.+|||++++.+.+.+.|+..++++.+++++||+||+|+|++.+++.++.+.+++.+.+++|++|
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 92 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVV 92 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEE
Confidence 89999999999999999999999999999888988889999999999999999999889999987666678888999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
||+||+.|.+++++.+.+.++|++|+++|++|+++.+..+++.+++||+++.+++++++|+.++.+++++|+.|+|+++|
T Consensus 93 id~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~K 172 (296)
T PRK11559 93 IDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTK 172 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHH
Q psy764 162 LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241 (286)
Q Consensus 162 l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~ 241 (286)
+++|++.+.++.+++|++.++++.|+|++++.+++..+.+.|+.++.+.+ ++..++|.++|+++++.||++++
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f~~~~~~KDl~~~ 245 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANA 245 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888887765543 22468899999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 242 EDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 242 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++++.
T Consensus 246 ~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 246 LDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998753
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=8.7e-49 Score=393.18 Aligned_cols=276 Identities=24% Similarity=0.350 Sum_probs=262.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.+||++|+++||+|++|||++++.+.+.+.|+..++++.+++++||+||+|||+++++++|+.+..|+.+.+++|++|
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~iv 414 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASI 414 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEE
Confidence 89999999999999999999999999999999988899999999999999999999999999998877888888999999
Q ss_pred EEcCCCCchHHHHHHHHHHh--cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEec-CCcchHH
Q psy764 82 IDSSTVDPQVPQTLSNLARE--KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHC-GDSGNGQ 158 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~-g~~g~a~ 158 (286)
||+||++|.+++++++.+.+ +|+.|+|+||+|++..+..|++++|+||+++.+++++|+|+.++.+++|+ |++|+|+
T Consensus 415 Vd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~ 494 (1378)
T PLN02858 415 VLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGS 494 (1378)
T ss_pred EECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHH
Confidence 99999999999999999998 89999999999999999999999999999999999999999999998885 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDM 238 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~ 238 (286)
++|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.| .+.+++|.++|+++++.||+
T Consensus 495 ~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~~f~l~l~~KDl 567 (1378)
T PLN02858 495 GVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTPYSALDIFVKDL 567 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765543 23478999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 239 KLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 239 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+++.+++++.|+++|+.+.++++|+.+.++|+|++|++++++++++
T Consensus 568 ~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 568 GIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1e-45 Score=336.40 Aligned_cols=255 Identities=16% Similarity=0.209 Sum_probs=231.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCc---ccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GAN---MALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||++||+||+++||+|.+|||++++++.+.+. |+. .+.|++|+++. +|+||+|||+++++++|+. ++
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~---gl 93 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIK---AL 93 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHH---HH
Confidence 99999999999999999999999999998764 544 68899999986 9999999999999999995 58
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC-----
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR----- 146 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~----- 146 (286)
.+.+.+|++|||+||+.|.+++++.+.+.++|++|+|+||+|++..+..|+ ++|+||+++++++++|+|+.++.
T Consensus 94 ~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~ 172 (493)
T PLN02350 94 SEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDG 172 (493)
T ss_pred HhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCC
Confidence 899999999999999999999999999999999999999999999999999 89999999999999999999995
Q ss_pred -CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHccCCCcccccccCCCCCccccCCC
Q psy764 147 -NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDV---INTSSGRCWSSEVYNPVPGVLSNVPA 221 (286)
Q Consensus 147 -~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~ 221 (286)
.++|+|+.|+|+++|+++|.+.+.++++++|++.++++ .|+|++++.++ ++.+.+.||..+...+. +.
T Consensus 173 ~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~-------l~ 245 (493)
T PLN02350 173 PCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADI-------FS 245 (493)
T ss_pred CcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHH-------Hh
Confidence 49999999999999999999999999999999999999 59999999999 45778888887665442 12
Q ss_pred CC-CCCCCccchhHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHHHH
Q psy764 222 SN-NYNGGFKISLLAKDMK------LAEDLANRCTAQTDL-SKLATSIYKRLMD 267 (286)
Q Consensus 222 ~~-~~~~~f~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~ 267 (286)
.+ +|.++|.++.+.||+. +..+.+.++|+|+|+ .+++.++|.....
T Consensus 246 ~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 246 VKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred hcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 33 4778999999999999 899999999999999 8888887776543
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.7e-45 Score=320.51 Aligned_cols=269 Identities=22% Similarity=0.258 Sum_probs=245.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|++|.++|++|.+|||++++.+.+.+.|+..++++++++++ +|+||+|+|++.++++++. ++.+.+++|
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~---~i~~~l~~g 87 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK---DLYPLLSPG 87 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH---HHhccCCCC
Confidence 8999999999999999999999999999988899999999999876 6999999999889999986 488888899
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
++|||+||+.|.+++++.+.+.++|+.|+|+||+|++..++.|+ ++++||+++++++++|+|+.++. +++|+|++|
T Consensus 88 ~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g 166 (299)
T PRK12490 88 DIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVG 166 (299)
T ss_pred CEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999997 799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHcc-CCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG--MNAKLLSDVINTS-SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G--l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
+|+.+|+++|++.+.++.+++|++.++++.| +|++.++++++.+ .+.|+.++.+.+. + ..+++ .|.++
T Consensus 167 ~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~--~-----~~~~~--~~~l~ 237 (299)
T PRK12490 167 SGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKA--L-----AEDPK--LAGIK 237 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHH--H-----hhCCC--hhhhh
Confidence 9999999999999999999999999999999 9999999999964 4888877665442 1 23332 36789
Q ss_pred hHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCchhHHHHHHh
Q psy764 233 LLAKDM---KLAEDLANRCTAQTDLSKLAT-SIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 233 ~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
.+.||+ +++.+.+++.|+|+|++..+. .+|....++|.|++|++++.+++.
T Consensus 238 ~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 238 GYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 999998 899999999999999999996 899999999999999999998874
No 12
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.6e-42 Score=302.23 Aligned_cols=269 Identities=25% Similarity=0.311 Sum_probs=239.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
.||+++|++|+++||+|.+|||++++.+.+.+.|+..+++++|+++. +|+||+|+|++.++++++. ++.+.+++
T Consensus 10 ~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~---~l~~~l~~ 86 (301)
T PRK09599 10 RMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID---ELAPLLSP 86 (301)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH---HHHhhCCC
Confidence 38999999999999999999999999999988899999999999876 6999999999878899986 47788889
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC----CeEecCC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR----NIVHCGD 153 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~----~v~~~g~ 153 (286)
|++|||+||+.|..++++.+.+.++|+.|+|+||+|++..++.|. ++|+||+++.+++++|+|+.++. +++|+|+
T Consensus 87 g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 165 (301)
T PRK09599 87 GDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGP 165 (301)
T ss_pred CCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECC
Confidence 999999999999999999999999999999999999999999996 89999999999999999999998 8999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCcc
Q psy764 154 SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK--LGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 154 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~--~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
.|+|+.+|+++|++.+.++.+++|++.++++ .|+|+++++++++.+. ++|+.++.+.+. + .++ +.|.
T Consensus 166 ~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~-------~-~~~--~~~~ 235 (301)
T PRK09599 166 VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADA-------L-AED--PKLD 235 (301)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-------H-hcC--CCHH
Confidence 9999999999999999999999999999999 9999999999999875 688877665432 1 122 2232
Q ss_pred -chhHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCchhHHHHHHh
Q psy764 231 -ISLLAKD---MKLAEDLANRCTAQTDLSKLATS-IYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 231 -~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
+....|| ++++.+.|.+.|+++|.+.++.. .|....+.|+|+.|++++.+++.
T Consensus 236 ~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 236 EISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 3334555 58999999999999999999554 58888899999999999998874
No 13
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=1e-40 Score=302.34 Aligned_cols=246 Identities=22% Similarity=0.278 Sum_probs=213.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..||+||+++||+|.+|||++++++++.+. |+..++|++|++++ +|+||+|||+++++++|+. ++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~---~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE---QLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH---HHHh
Confidence 89999999999999999999999999999874 58899999999985 8999999999999999996 4899
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCe-----
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI----- 148 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v----- 148 (286)
.+.+|++|||+||+.|..+++..+.+.++|++|+|+||+|++.+|+.|. ++|+||+++++++++|+|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 9999999999999999999999887
Q ss_pred --EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HccCCCcccccccCCCCCccccCCCC
Q psy764 149 --VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVI---NTSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 149 --~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
+|+|+.|+|+++||++|.+.+.++++++|++.+++ +.|+|++++.+++ +.+.+.||..+...+. +..
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~-------l~~ 229 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADI-------LRQ 229 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHH-------Hhc
Confidence 89999999999999999999999999999999999 5999999999999 5677888887765442 224
Q ss_pred CCCCCCc-cchhH------HHHHHHHHHHHhhcCCCchHHHHH
Q psy764 223 NNYNGGF-KISLL------AKDMKLAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 223 ~~~~~~f-~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~ 258 (286)
+++..+. -++.. .-.-+.....|-++|+|.|++..+
T Consensus 230 ~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 230 KDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred CCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 4442222 12211 112245777888899998865543
No 14
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-37 Score=281.65 Aligned_cols=248 Identities=20% Similarity=0.245 Sum_probs=209.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
.||++||++|+++||+|++|||++++++.+.+. | +..+++++|+++ ++|+||+|||+++++++|+.+ +
T Consensus 11 ~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~---l 87 (470)
T PTZ00142 11 VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDN---L 87 (470)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHH---H
Confidence 389999999999999999999999999988764 5 446889999997 489999999999999999974 8
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC----
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN---- 147 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~---- 147 (286)
.+.+.+|++|||+||..|..+++..+.+.++|++|+|+||+|++.+++.|. ++|+||+++++++++|+|+.++.+
T Consensus 88 ~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~ 166 (470)
T PTZ00142 88 LPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDS 166 (470)
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCC
Confidence 889999999999999999999999999999999999999999999999999 899999999999999999999987
Q ss_pred --eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCC
Q psy764 148 --IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPA 221 (286)
Q Consensus 148 --v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~ 221 (286)
++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|+|++++.+++. .+...||..+.......
T Consensus 167 ~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~------- 239 (470)
T PTZ00142 167 PCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILA------- 239 (470)
T ss_pred CeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhh-------
Confidence 899999999999999999999999999999999998 79999999999984 67788888765443111
Q ss_pred CCCCCC-CccchhH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 222 SNNYNG-GFKISLL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 222 ~~~~~~-~f~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
..+-.. ++-++.. .-.-+...+.|-++|+|.|++..+.
T Consensus 240 ~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 240 KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 111000 1111111 1122457788889999998765543
No 15
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=3e-37 Score=268.52 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=217.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+++|++|.++||+|.+|||++++++.+.+.|+....++.+++ +++|+||+|+|++ .+++++.+ +.+.+++|
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~---l~~~l~~g 86 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEE---LAPTLEKG 86 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHH---HHhhCCCC
Confidence 89999999999999999999999999999988888788887765 4589999999987 89999974 88888999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
++|||+||..|..+.+..+.+.++|++|+|+|++|++..+..| +++++||+++.+++++++|+.++. .++|+|+.|
T Consensus 87 ~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G 165 (298)
T TIGR00872 87 DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCG 165 (298)
T ss_pred CEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCcc
Confidence 9999999999999999999999999999999999999999999 589999999999999999999986 589999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKL--GMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
+++.+|+++|.+.+.++.+++|++.++++. |+|++++.++++.+. .+||+++.+.+. + ..+++.+.|...
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~---~----~~~~~~~~~~~~ 238 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIA---F----RESPDLAEFSGR 238 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHH---H----hcCCcHHHHHHH
Confidence 999999999999999999999999999998 569999999999876 588887665432 1 123333445544
Q ss_pred -hHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 233 -LLAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 233 -~~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
...+|.+.+...+.+.|+|.|.+.++.
T Consensus 239 ~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 239 VSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred HHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 467888999999999999999998854
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=9e-37 Score=277.78 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=208.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
.||.+||++|+++||+|++|||++++++++.+. ++..+.+++++++ ++|+||+|||+++.+++|+.+ +.
T Consensus 9 ~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~---l~ 85 (467)
T TIGR00873 9 VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQ---LL 85 (467)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHH---HH
Confidence 389999999999999999999999999999865 2567788988874 689999999998999999964 88
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC-----
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN----- 147 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~----- 147 (286)
+.+.+|++|||+||+.|..+++..+.+.++|++|+|+||+|++.+++.|. ++|+||+++++++++|+|+.++.+
T Consensus 86 ~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~ 164 (467)
T TIGR00873 86 PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEP 164 (467)
T ss_pred hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Confidence 88999999999999999999999999999999999999999999999998 899999999999999999999987
Q ss_pred -eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HccCCCcccccccCCCCCccccCCCC
Q psy764 148 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVI---NTSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 148 -v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|+|++++.+++ +.+.++||..+...+... .
T Consensus 165 ~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~-------~ 237 (467)
T TIGR00873 165 CCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK-------K 237 (467)
T ss_pred ceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh-------c
Confidence 489999999999999999999999999999999985 7999999999999 577888998776554211 1
Q ss_pred CCCCCCccchhH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 223 NNYNGGFKISLL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 223 ~~~~~~f~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
++-...+-++.. .-.-+.....|-++|+|.|++....
T Consensus 238 ~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 238 KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 110001111111 1123457778888999988765543
No 17
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=100.00 E-value=3.3e-34 Score=260.13 Aligned_cols=244 Identities=19% Similarity=0.157 Sum_probs=208.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------cC-CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||+++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+||+|||++..
T Consensus 10 ~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~ 89 (411)
T TIGR03026 10 YVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLK 89 (411)
T ss_pred chhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCC
Confidence 38999999999999999999999999887764 23 56677889999999999999998753
Q ss_pred ---------HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCc-eEeccCCCCHHhhhcCce-----
Q psy764 61 ---------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QIT-FLDAPVSGGTKAAQEATL----- 123 (286)
Q Consensus 61 ---------~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~-~~~~pv~g~~~~a~~g~l----- 123 (286)
+..++. ++.+.+++|++||++||+.|.+++++.+.+.++ |.. +.+.|+.++|..+..|.+
T Consensus 90 ~~~~~d~~~v~~~~~---~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~ 166 (411)
T TIGR03026 90 EDGSPDLSYVESAAE---TIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLL 166 (411)
T ss_pred CCCCcChHHHHHHHH---HHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhc
Confidence 566654 477788899999999999999999997665544 443 667888888888888886
Q ss_pred ---EEEecCCHhhHHHHHHHHHHhc-CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 124 ---TFMVGGDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 124 ---~~~~gg~~~~~~~~~~ll~~~g-~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.+++|++++.+++++++|+.++ ..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|+++++++++.+
T Consensus 167 ~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 167 NPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD 246 (411)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 7899999999999999999998 578999999999999999999999999999999999999999999999998753
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCC--ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGG--FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
. ++..+.|.|+ |...++.||+.++.+.+++.|+++|++++++++.+.-
T Consensus 247 ~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 247 P------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred C------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 1 0113445554 4678899999999999999999999999999986654
No 18
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=100.00 E-value=3e-34 Score=228.28 Aligned_cols=151 Identities=36% Similarity=0.617 Sum_probs=139.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|+++||+|++|||++++.+++.+.|++.++|++|+++++|+||+|||+++++++++++++ +.+.+++|++|
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l~~g~ii 90 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGLRPGKII 90 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS-TTEEE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-HhhccccceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEe-cCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH-CGD 153 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~-~g~ 153 (286)
||+||++|.+++++++.+.++|++|+|+||+|++..+..|++++|+||+++.+++++|+|+.++.+++| +|+
T Consensus 91 id~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 91 IDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred EecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 475
No 19
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.9e-31 Score=212.36 Aligned_cols=244 Identities=27% Similarity=0.350 Sum_probs=205.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+.++|.+.||+|.+||+|++.++++...|++.++|+.+.+. ...+|.++||..+.+..|+.. +.+.+.+|
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~---la~~L~~G 87 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD---LAPLLSAG 87 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH---HHhhcCCC
Confidence 899999999999999999999999999999999999999998875 578999999988889999986 88899999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
.+|||-.+.....+++..+.+.++|++|+|+..+|++.+++.|. ++|+||+++++++++|+|+.+.. -..|+|+.|
T Consensus 88 DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~G 166 (300)
T COG1023 88 DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSG 166 (300)
T ss_pred CEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999975 468999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccC-CCcccccccCC----CCCccccCCCCCCCCCC
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKL--GMNAKLLSDVINTSS-GRCWSSEVYNP----VPGVLSNVPASNNYNGG 228 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~~~~~~ 228 (286)
+|+.+||++|-+.|+++++++|.+.+.++. .+|.+.+.++-+.++ -+||.+++... -+++-+ + .+.....
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q--~-~g~v~dS 243 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQ--I-SGRVSDS 243 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHH--h-cCeeccC
Confidence 999999999999999999999999999975 567889999988874 77888765322 111100 0 0000000
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
. +=+...+.+-++|+|.|++..+.
T Consensus 244 G-------EGrWTv~~aldlgvpaPVia~al 267 (300)
T COG1023 244 G-------EGRWTVEEALDLGVPAPVIALAL 267 (300)
T ss_pred C-------CceeehHHHHhcCCCchHHHHHH
Confidence 0 11234567788899999876654
No 20
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=1.6e-31 Score=236.10 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=217.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------C------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------G------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+++|.+|+++||+|++|+|++++.+.+.+. | +..+++++++++++|+||+|+|+. ++++++.
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~- 92 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-ALRETLA- 92 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-HHHHHHH-
Confidence 89999999999999999999999988888754 3 346678999999999999999975 6777764
Q ss_pred CccccccCCCCCEEEEcCC-CCchH--HHHHHHHHHh---cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSST-VDPQV--PQTLSNLARE---KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st-~~p~~--~~~~~~~~~~---~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
.++++.++|++++ ..|.. .+.+.+.+.+ +++.++++|..........+++.+++|++.+.+++++++|
T Consensus 93 ------~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll 166 (328)
T PRK14618 93 ------GLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAF 166 (328)
T ss_pred ------hcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 2557789999998 46664 6677777766 6777888887766666666888999999999999999999
Q ss_pred HHhcCCeE--------ecCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc----cC
Q psy764 142 KCMGRNIV--------HCGD---------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT----SS 200 (286)
Q Consensus 142 ~~~g~~v~--------~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~----~~ 200 (286)
+..+.+++ +++. .|.+..+|+.+|.....+..++.|+..+++++|+|++++++++.. ++
T Consensus 167 ~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t 246 (328)
T PRK14618 167 SGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIAT 246 (328)
T ss_pred CCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeE
Confidence 99998776 3553 588999999999999999999999999999999999999999876 47
Q ss_pred CCcccccccCCCCCccccCCCCC---C-CCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchh
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASN---N-YNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFS 276 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 276 (286)
+.|+.++++.++..+. ++ + +.++|.+.++.||++++.+++++.++++|+++.+++++ +++.|..
T Consensus 247 ~~s~~~rn~~~g~~~~-----~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~ 314 (328)
T PRK14618 247 ATSPHSRNRAAGEAIV-----RGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPL 314 (328)
T ss_pred eccCCCccHHHHHHHh-----CCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHH
Confidence 7888887765432232 34 3 56789999999999999999999999999999999987 4566777
Q ss_pred HHHHHHhhc
Q psy764 277 YIYEFLKNK 285 (286)
Q Consensus 277 ~~~~~~~~~ 285 (286)
++++.+-++
T Consensus 315 ~~~~~~~~~ 323 (328)
T PRK14618 315 AGLRSLMGR 323 (328)
T ss_pred HHHHHHhcC
Confidence 776665443
No 21
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.97 E-value=7.2e-30 Score=230.94 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=192.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc----------------ccCCHHHHhhcCcEEEEecCCh------h
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN----------------MALSLSTLASGAEFIISMLPAS------Q 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~adivi~~v~~~------~ 59 (286)
||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||+| .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999887 699999999999999998 4432 3445556789999999999998 4
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCceEe--------ccCCCCHHhhhcCceE-EEec
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD--------APVSGGTKAAQEATLT-FMVG 128 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~--------~pv~g~~~~a~~g~l~-~~~g 128 (286)
+++.|+...+++.+.+++|++||++||+.|.+++++.+...++ |..+.+ .|+.+|.......++. ++.|
T Consensus 95 dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G 174 (425)
T PRK15182 95 DLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSG 174 (425)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEEC
Confidence 5577777666788999999999999999999999765544333 555544 3455554444444433 5556
Q ss_pred CCHhhHHHHHHHHHHhc-CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccc
Q psy764 129 GDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSE 207 (286)
Q Consensus 129 g~~~~~~~~~~ll~~~g-~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~ 207 (286)
++++..+.++++++.+. ..++++++.+.|+.+|+++|++.+.++++++|+..+|++.|+|.++++++++.. |.+.
T Consensus 175 ~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~ 250 (425)
T PRK15182 175 STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFL 250 (425)
T ss_pred CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcc
Confidence 67788889999999996 457889999999999999999999999999999999999999999999996533 3221
Q ss_pred ccCCCCCccccCCCCCCCCCC-ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 208 VYNPVPGVLSNVPASNNYNGG-FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~-f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
. +.|| |...|+.||...+...+++.|.+++++++++++-+.
T Consensus 251 ~----------------~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 251 P----------------FRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred c----------------CCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1 1234 667799999999999999999999999999987554
No 22
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.97 E-value=6e-29 Score=225.06 Aligned_cols=241 Identities=18% Similarity=0.162 Sum_probs=191.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CCHHHH---------------hhcCcEEEEecCCh------
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LSLSTL---------------ASGAEFIISMLPAS------ 58 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~adivi~~v~~~------ 58 (286)
.||.++|.+|+++||+|++||+++++++.+...+.... ..+.+. .++||+||+|||+|
T Consensus 13 ~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~ 92 (415)
T PRK11064 13 YIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHE 92 (415)
T ss_pred hhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCC
Confidence 38999999999999999999999999998653322221 122222 24799999999997
Q ss_pred ---hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC--------------ceEecc--CCCCHHhhh
Q psy764 59 ---QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--------------TFLDAP--VSGGTKAAQ 119 (286)
Q Consensus 59 ---~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~--------------~~~~~p--v~g~~~~a~ 119 (286)
..+..++. ++.+.+++|++||++||+.|.+++++...+.+++. .++++| +..+.....
T Consensus 93 ~dl~~v~~~~~---~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~ 169 (415)
T PRK11064 93 PDLTYVEAAAK---SIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVE 169 (415)
T ss_pred cChHHHHHHHH---HHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhh
Confidence 56666665 48888999999999999999999999887776543 346777 666666666
Q ss_pred cCceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 120 EATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 120 ~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
..++..++|| +++.+++++++|+.++..+++++++++|+.+|+++|++.+.++++++|+..+|++.|+|++++.+.++.
T Consensus 170 ~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~ 249 (415)
T PRK11064 170 LIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANR 249 (415)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 6667788899 899999999999999988899999999999999999999999999999999999999999999999875
Q ss_pred cCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 199 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.+. . ....| .+||...|+.||..++.. +.+.+.+++++++++-+.-
T Consensus 250 ~~r---i-~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 250 HPR---V-NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CCC---c-ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 421 1 11122 245667799999987643 4566788998888765443
No 23
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.96 E-value=4.7e-28 Score=216.74 Aligned_cols=233 Identities=18% Similarity=0.232 Sum_probs=188.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH----------------cCCccc--CCHHHHhhcCcEEEEecCCh-----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK----------------EGANMA--LSLSTLASGAEFIISMLPAS----- 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~~--~s~~e~~~~adivi~~v~~~----- 58 (286)
||+++|..|+ .||+|++||+++++++.+.+ .+.+.. .++.+++++||+||+|||++
T Consensus 11 vGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 8999997777 49999999999999998876 233443 34778889999999999988
Q ss_pred -----hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCce--------EE
Q psy764 59 -----QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------TF 125 (286)
Q Consensus 59 -----~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l--------~~ 125 (286)
..+++++. ++.+ +++|++||++||++|.+++++.+.+.+.++.| +|..+..|++ .+
T Consensus 90 ~~~dl~~v~~v~~---~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a~~d~~~p~rv 158 (388)
T PRK15057 90 NYFNTSSVESVIK---DVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKALYDNLHPSRI 158 (388)
T ss_pred CCcChHHHHHHHH---HHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcccccccCCCEE
Confidence 56777775 3766 68999999999999999999998877665444 6667777887 89
Q ss_pred EecCCHhhHHHHHHHHHH--hcCCeE-ecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC
Q psy764 126 MVGGDKSSLEKAKPILKC--MGRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR 202 (286)
Q Consensus 126 ~~gg~~~~~~~~~~ll~~--~g~~v~-~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~ 202 (286)
++|++++..+++.++|.. ++..+. ++++.++|+.+|+++|.+.+.++++++|+..+|++.|+|.+++.++++..+.
T Consensus 159 v~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~r- 237 (388)
T PRK15057 159 VIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPR- 237 (388)
T ss_pred EEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCC-
Confidence 999998888999999854 555444 6899999999999999999999999999999999999999999999876431
Q ss_pred cccccc-cCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 203 CWSSEV-YNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 203 s~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.... ..| .+||...|+.||...+...+ .+++++++++++++-+..
T Consensus 238 --i~~~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 238 --IGNHYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred --CCCccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 1110 012 24677889999999887665 567789999998875543
No 24
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.96 E-value=8.7e-29 Score=218.58 Aligned_cols=266 Identities=17% Similarity=0.207 Sum_probs=209.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|.+|+++||+|++|||++++.+.+.+. ++..+.++.++++++|+||+|+|+ .++++++.+
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~~ 90 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS-QALREVLKQ 90 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH-HHHHHHHHH
Confidence 89999999999999999999999998888775 355667888899999999999996 588888874
Q ss_pred CccccccCCCCCEEEEcC-CCCchHHHHHHHHHHhc-----CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSS-TVDPQVPQTLSNLAREK-----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~s-t~~p~~~~~~~~~~~~~-----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
+.+.+.++++||+++ ++.+.+.+++.+.+.+. ...++.+|.......+..+++.++.+++.+.++++.++|
T Consensus 91 ---l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 167 (325)
T PRK00094 91 ---LKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELF 167 (325)
T ss_pred ---HHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHh
Confidence 777778899999998 77777666666666554 344667777766655666677788888999999999999
Q ss_pred HHhcCCeEecCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----C
Q psy764 142 KCMGRNIVHCGD-----------------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----S 200 (286)
Q Consensus 142 ~~~g~~v~~~g~-----------------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~ 200 (286)
+..+.++++..+ .|.+..+|+++|.+...+..+++|++.++++.|+|+++++++...+ +
T Consensus 168 ~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~ 247 (325)
T PRK00094 168 HSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLT 247 (325)
T ss_pred CCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhh
Confidence 999877665543 2778889999999999999999999999999999999999876544 3
Q ss_pred CCcccccccCCCCCccccCCCCCC-C-----CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCc
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASNN-Y-----NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKD 274 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 274 (286)
+.++.++++.+...+. .+. + .++ .+.++.||++++.++++++|+++|+.++++++| +.+.|
T Consensus 248 ~~s~~~~~~~~g~~~~-----~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~~ 314 (325)
T PRK00094 248 CTSPLSRNRRFGLALG-----QGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGKD 314 (325)
T ss_pred ccCCCCccHHHHHHHH-----CCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCCC
Confidence 4444444443221111 111 1 112 677889999999999999999999999999998 46777
Q ss_pred hhHHHHHHhh
Q psy764 275 FSYIYEFLKN 284 (286)
Q Consensus 275 ~~~~~~~~~~ 284 (286)
...+++.+.+
T Consensus 315 ~~~~~~~~~~ 324 (325)
T PRK00094 315 PREAVEDLMG 324 (325)
T ss_pred HHHHHHHHhc
Confidence 7777766543
No 25
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.95 E-value=3e-27 Score=206.83 Aligned_cols=244 Identities=17% Similarity=0.263 Sum_probs=189.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc-cCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK-HAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~g~i 80 (286)
||+++|.+|.++||+|++|||++. .++.++++++|+||+|+|+ .++++++.+ +.+ .+.++++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~---l~~~~~~~~~i 77 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ---VQALNLPPETI 77 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH---HHHhcCCCCcE
Confidence 899999999999999999999864 5788999999999999997 588998864 555 3678899
Q ss_pred EEEcCC-CCchHHHHHHHHHHhcCCceEeccCC--CCHHhh-----hcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 81 VIDSST-VDPQVPQTLSNLAREKQITFLDAPVS--GGTKAA-----QEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 81 vid~st-~~p~~~~~~~~~~~~~g~~~~~~pv~--g~~~~a-----~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
||++|+ ..|.+.+.+.+.+..+ |.+.|+. ++|..+ ..+++++++|++.+.+++++++|+.++.++++.+
T Consensus 78 vi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~ 154 (308)
T PRK14619 78 IVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNS 154 (308)
T ss_pred EEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 999987 6777666666655432 4456663 344333 3357789999999999999999999998888666
Q ss_pred C---cch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCc
Q psy764 153 D---SGN--------------GQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGV 215 (286)
Q Consensus 153 ~---~g~--------------a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 215 (286)
+ ... +..+|+.+|.....++.++.|++.+++++|+++++++++ .+.+.++.. .+
T Consensus 155 d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~t-----~~-- 225 (308)
T PRK14619 155 DPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLAT-----CT-- 225 (308)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhhee-----ec--
Confidence 5 233 344458999999999999999999999999999999885 244433331 11
Q ss_pred cccCCCCCCCCCCccchhH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHH
Q psy764 216 LSNVPASNNYNGGFKISLL----------------AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIY 279 (286)
Q Consensus 216 ~~~~~~~~~~~~~f~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~ 279 (286)
.+.+++|.++|.+..+ .||++++.+++++.|+++|++.+++++|. ++.+...++
T Consensus 226 ---~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~ 295 (308)
T PRK14619 226 ---SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQAL 295 (308)
T ss_pred ---CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHH
Confidence 1236777777777766 99999999999999999999999999983 556666666
Q ss_pred HHHhh
Q psy764 280 EFLKN 284 (286)
Q Consensus 280 ~~~~~ 284 (286)
+.+.+
T Consensus 296 ~~l~~ 300 (308)
T PRK14619 296 EELME 300 (308)
T ss_pred HHHHc
Confidence 55543
No 26
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.94 E-value=2.2e-25 Score=195.11 Aligned_cols=256 Identities=13% Similarity=0.127 Sum_probs=201.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+++|.+|+++||+|++|||++++.+.. .+.| +..+.++++++++||+||.|+|.
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 89999999999999999999999876653 3344 25778899999999999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHhhH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKSSL 134 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~~~ 134 (286)
+.+++..+.+ .++...++.+++. ||+++....++++.+...+..+.++|+.+.... .++.+++ ++++.+
T Consensus 93 ~~~~k~~~~~---~l~~~~~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~t~~~~~ 164 (308)
T PRK06129 93 NLELKRALFA---ELDALAPPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPWTAPATL 164 (308)
T ss_pred CHHHHHHHHH---HHHHhCCCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCCCCHHHH
Confidence 7666666543 2333345566665 444556677888887767778889999863211 2567786 789999
Q ss_pred HHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCC
Q psy764 135 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPG 214 (286)
Q Consensus 135 ~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~ 214 (286)
++++++++.+|++++++++.+.|. ++||+ +...++|++.++++.|+|++++.++++.+.+.+|.+ +.| .
T Consensus 165 ~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp--~ 233 (308)
T PRK06129 165 ARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGP--F 233 (308)
T ss_pred HHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCH--H
Confidence 999999999999999999767775 45554 346899999999999999999999999998888765 333 2
Q ss_pred ccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHH
Q psy764 215 VLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEF 281 (286)
Q Consensus 215 ~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 281 (286)
. ..+.|.++|...++.||..+..+++++.+.+.|++....+......+.-++..++..+.+.
T Consensus 234 ~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 234 E-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred H-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2 2455778899999999999999999999999998887777666666777888888877665
No 27
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.94 E-value=2.3e-25 Score=195.72 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=157.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|+++|.+|+++||+|++|||+++ +.+.+.+.|+.++.++.++++++|+||+|+|++.++++++. ++.+.+++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~---~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK---NILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH---HHHhhCCC
Confidence 88999999999999999999987 45567777998889999999999999999998766899986 48888899
Q ss_pred CCEEEEcCCCCchHH-HHHHHHHH----hcCCceE-eccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVP-QTLSNLAR----EKQITFL-DAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~-~~~~~~~~----~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
+++|||+||++|... +.+.+.+. ..|+.+. ++++.|+ ..+.+.+++|| +++.+++++++|+.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a 184 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAES 184 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999999987 66666664 2355444 3444444 34445667765 88999999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+|.++++++ .|.++.+|+++|++.+.++++.+|++.++++.|.++.++.+-+.
T Consensus 185 ~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~ 237 (342)
T PRK12557 185 IGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQI 237 (342)
T ss_pred cCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999887777 59999999999999999999999999999999999988876544
No 28
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=191.42 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=175.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..||.|+.++||+|.+|||+++|.+++.+. .+..+.|++|.+ +...-|+++|.....++.++++ +.+
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~---L~p 90 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQ---LLP 90 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHH---HHh
Confidence 89999999999999999999999999999764 356777888876 4677899999987778999886 999
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC------C
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR------N 147 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~------~ 147 (286)
++.+|+++||-.+.....+.+..+.+.++|+.|+.+.|+|++.+|..|. ++|.||++++++.++|+|..++. .
T Consensus 91 ~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pC 169 (473)
T COG0362 91 LLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPC 169 (473)
T ss_pred hcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCc
Confidence 9999999999998888777777888999999999999999999999999 89999999999999999999974 3
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHc
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINT 198 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~ 198 (286)
+.|+|+-|+|+.+|++||.+.|+-++.++|++.+.+. .|++.+++.+++..
T Consensus 170 c~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 170 CTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred eeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999997 89999999888764
No 29
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.92 E-value=3.7e-25 Score=167.52 Aligned_cols=122 Identities=35% Similarity=0.604 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.| ..+.+++|.|+|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~------~~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP------RMILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH------HHHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh------hhhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999998876643 12347899999999999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 282 (286)
.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
No 30
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.91 E-value=2e-22 Score=174.67 Aligned_cols=243 Identities=17% Similarity=0.182 Sum_probs=191.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------------------C-CcccCCHHHHhhcCcEEEEecCChhH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adivi~~v~~~~~- 60 (286)
+|...+.+|++.||+|++.|.+++|++.+++. | .+++.+.+++++++|++|+|||+|..
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 68999999999999999999999999887651 1 57788999999999999999998853
Q ss_pred --------HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC----CceEeccCCCCHHhhhcCce---EE
Q psy764 61 --------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ----ITFLDAPVSGGTKAAQEATL---TF 125 (286)
Q Consensus 61 --------~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g----~~~~~~pv~g~~~~a~~g~l---~~ 125 (286)
++.+.. .+.+.++..++||..||+.|.++.++.+.+.... +..+..|.|-.+..|....+ .+
T Consensus 91 dg~aDl~~V~ava~---~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D~~~PdRI 167 (414)
T COG1004 91 DGSADLSYVEAVAK---DIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRI 167 (414)
T ss_pred CCCccHHHHHHHHH---HHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhhccCCCeE
Confidence 455554 3777777779999999999999999988776654 34555565555444433222 57
Q ss_pred EecCCHh-hHHHHHHHHHHh---cCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 126 MVGGDKS-SLEKAKPILKCM---GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 126 ~~gg~~~-~~~~~~~ll~~~---g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
++|.+.+ +.+..++++..+ ..++.+++ ...|+++|+.+|.+++.-+..++|.-.+|++.|+|.+++.+.++...
T Consensus 168 ViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD~- 245 (414)
T COG1004 168 VIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEGIGLDP- 245 (414)
T ss_pred EEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCc-
Confidence 8888654 577888888776 44455555 58999999999999999999999999999999999999999887541
Q ss_pred CcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 202 RCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 202 ~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
.....+ + .. ..||...|+.||.+.++..++++|.+.++++++.++-++
T Consensus 246 --RIG~~f------l----~a---G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~ 293 (414)
T COG1004 246 --RIGNHF------L----NA---GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNER 293 (414)
T ss_pred --hhhHhh------C----CC---CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111111 0 01 247778899999999999999999999999999887554
No 31
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.90 E-value=3e-23 Score=177.46 Aligned_cols=258 Identities=16% Similarity=0.177 Sum_probs=202.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
.|++||..|+++||+|.+|.|+++-++++... ++.+++++.++++++|+|++++|+ +.+++++..
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~~~ 90 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS-QALREVLRQ 90 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh-HHHHHHHHH
Confidence 59999999999999999999999998888763 256788999999999999999995 799999985
Q ss_pred CccccccCCCCCEEEEcCCCC-chHHHHHHHHHHhc----CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILK 142 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~-p~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 142 (286)
+.+.++++.++|.+|... +.+.+.+.+.+.+. .+.++++|.+..+......+.+.+.+-|.+..++++.+|.
T Consensus 91 ---l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~ 167 (329)
T COG0240 91 ---LKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFS 167 (329)
T ss_pred ---HhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhC
Confidence 666788999999998654 54555555544433 3667888888877777788878888888998899999998
Q ss_pred HhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CC
Q psy764 143 CMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SG 201 (286)
Q Consensus 143 ~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~ 201 (286)
+-..+++...+ +..+.++| +..|+..+.++.+++|+.+++..+|-++++++.+.+-+ ++
T Consensus 168 ~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTC 247 (329)
T COG0240 168 SPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTC 247 (329)
T ss_pred CCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEec
Confidence 86665554443 34555555 78999999999999999999999999999998887665 78
Q ss_pred CcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 202 RCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 202 ~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
+|..++|++.+..+.++......-.....+....+..+.+.++++++++++|+++++++++.
T Consensus 248 ts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~ 309 (329)
T COG0240 248 TSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY 309 (329)
T ss_pred CCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 88888887654333222111111112355778899999999999999999999999999875
No 32
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.89 E-value=3.3e-22 Score=171.74 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=176.5
Q ss_pred CccHHHHHHHHhCCC----cEEEE-cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGH----DVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||.+++++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+| ++++++++.+ +.+.+
T Consensus 10 ~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~---l~~~~ 85 (266)
T PLN02688 10 KMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE---LRPLL 85 (266)
T ss_pred HHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH---HHhhc
Confidence 389999999999998 89999 999999998888899999999999999999999997 6789999874 77777
Q ss_pred CCCCEEEEcCC-CCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSST-VDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st-~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
.++++||++++ +.... +.+..... .++ .+|..+.........++...+++++.+++++++|+.+|. ++++++
T Consensus 86 ~~~~~iIs~~~g~~~~~---l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e 159 (266)
T PLN02688 86 SKDKLLVSVAAGITLAD---LQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDE 159 (266)
T ss_pred CCCCEEEEecCCCcHHH---HHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 88998887643 33332 23333221 566 467665544433333333334478899999999999999 888743
Q ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccccc-CCCCCccccCCCCC
Q psy764 154 ---------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVY-NPVPGVLSNVPASN 223 (286)
Q Consensus 154 ---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~ 223 (286)
.|++.++ .+.++.++.|+ +.+.|+|++++.+++..+..+++..-.. ...|. .+.+.
T Consensus 160 ~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~----~l~~~ 225 (266)
T PLN02688 160 KLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPG----QLKDM 225 (266)
T ss_pred HHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHh
Confidence 5666664 77888899999 9999999999999999886666643111 11111 11133
Q ss_pred CCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 224 NYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 224 ~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
.-+|+.++.. .++..++.|++-.+.+++.+.++++.+.+
T Consensus 226 v~spgG~t~~-------~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 226 VTSPGGTTIA-------GVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 3356555554 67788889999999999999999998865
No 33
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.89 E-value=1.2e-21 Score=169.26 Aligned_cols=244 Identities=17% Similarity=0.161 Sum_probs=179.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------------------C-CcccCCHHHHhhcCcEEEEecCChhH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adivi~~v~~~~~- 60 (286)
||.++|..++++|++|.++|.++.+++.+++. | .+.+.++.++. .||++|+|||+|-.
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~-~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK-ECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc-cCCEEEEEecCCcCC
Confidence 89999999999999999999999988877642 1 45666666664 89999999998742
Q ss_pred -----HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCce------Eecc--CC-CCHHhhhcCceE
Q psy764 61 -----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITF------LDAP--VS-GGTKAAQEATLT 124 (286)
Q Consensus 61 -----~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~------~~~p--v~-g~~~~a~~g~l~ 124 (286)
+.-|....+.+.+.|++|++||--||+.|.+++++...+.+. |..+ .-+| +. |...........
T Consensus 99 ~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~k 178 (436)
T COG0677 99 YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPK 178 (436)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCc
Confidence 333333334588899999999999999999999999988774 3332 1233 22 211111122223
Q ss_pred EEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 125 FMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 125 ~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
++-|-++...+.+..+++.+-..++.+.+.-.|++.|+..|.+...++++.+|...+|.++|+|...++++.++-+ |
T Consensus 179 VIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt~P---~ 255 (436)
T COG0677 179 VIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANTKP---R 255 (436)
T ss_pred eeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhccCC---c
Confidence 4444467888899999999987788888889999999999999999999999999999999999999999988652 3
Q ss_pred cccccCCCCCccccCCCCCCCCCCccchhHHH--HHHHHHHHHhhcCCCch
Q psy764 205 SSEVYNPVPGVLSNVPASNNYNGGFKISLLAK--DMKLAEDLANRCTAQTD 253 (286)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k--d~~~~~~~a~~~g~~~p 253 (286)
+..+.|+|+...+++.- +|.|-+....+ .-.-++++|++.+-.||
T Consensus 256 -~~~~~PGpGvGGHCIpv---DP~fl~~ka~~yg~~~rlI~tAreIN~~mP 302 (436)
T COG0677 256 -VNIFYPGPGVGGHCIPV---DPYFLTWKAPEYGLPARLIRTAREINDSMP 302 (436)
T ss_pred -eeecCCCCCCCCccccc---CchheeecccccCCchHHHHHHHHHhccCC
Confidence 55677888877665432 23342222211 12235677777766665
No 34
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.89 E-value=4.4e-21 Score=175.27 Aligned_cols=242 Identities=14% Similarity=0.150 Sum_probs=187.1
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHcC-------------------CcccCCHHHHhhcCcEEEEecCChh-
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKEG-------------------ANMALSLSTLASGAEFIISMLPASQ- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~adivi~~v~~~~- 59 (286)
||.++|..|+++| |+|++||+++++++.+++.+ ...+++..+++++||++|+|||+|.
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 7999999999885 78999999999998875422 3455677888999999999998775
Q ss_pred -------------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--C--CceEeccCCCCHHhhhcC-
Q psy764 60 -------------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--Q--ITFLDAPVSGGTKAAQEA- 121 (286)
Q Consensus 60 -------------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g--~~~~~~pv~g~~~~a~~g- 121 (286)
.++++... +.+.++++++||..||+.|.+++++...+.+. | +.+..+|.+-.+..+...
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~---i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~ 168 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARM---IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDL 168 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHH---HHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCccccc
Confidence 34555553 77888999999999999999999998887764 3 346677877655554332
Q ss_pred --ceEEEecCC-----HhhHHHHHHHHHHhcC-CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy764 122 --TLTFMVGGD-----KSSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193 (286)
Q Consensus 122 --~l~~~~gg~-----~~~~~~~~~ll~~~g~-~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~ 193 (286)
.-.+++||. +++.++++.+++.+.. .++.+.++..|++.|++.|.+.+.+++.++|...+|++.|+|..++.
T Consensus 169 ~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 169 FKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred CCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 124667874 2357888999998853 45566677999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCC--chHHHHHHHHH
Q psy764 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ--TDLSKLATSIY 262 (286)
Q Consensus 194 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~ 262 (286)
+.++..+--++. ...| .+||...|+.||...+...+++.|.+ .++.+++.++-
T Consensus 249 ~~~~~d~rig~~--~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN 303 (473)
T PLN02353 249 HAVGKDSRIGPK--FLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMN 303 (473)
T ss_pred HHhCCCCcCCCC--CCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 988754210010 0112 24566789999999999999999998 77887776543
No 35
>KOG2653|consensus
Probab=99.89 E-value=2.2e-22 Score=170.35 Aligned_cols=193 Identities=22% Similarity=0.316 Sum_probs=174.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc---C--CcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE---G--ANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..|+.|.+.+||.|.+|||+.+|++++.+. | +..+.|++|.+ +...+|++.|+....+...+++ +.+
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~---L~p 93 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEE---LVP 93 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHH---HHh
Confidence 89999999999999999999999999988643 3 45567899987 4678999999998899999985 999
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC------
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 147 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~------ 147 (286)
++.+|++|||-.+.....+.+..+++.++|+-|+.+.|+|++.+|..|. ++|.||+.+++..++++|..+..+
T Consensus 94 ~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~ep 172 (487)
T KOG2653|consen 94 YLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEP 172 (487)
T ss_pred hcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999988887777777788899999999999999999999999 899999999999999999998643
Q ss_pred -eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHc
Q psy764 148 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINT 198 (286)
Q Consensus 148 -v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~ 198 (286)
+.++|+-|+|+.+||++|.+.++-++.++|++.+.++ .|++.+++.+++..
T Consensus 173 Cc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 173 CCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred CeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 4789999999999999999999999999999999999 89999999988864
No 36
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.88 E-value=5.9e-22 Score=171.13 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=172.8
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCch-HHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTD-ASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++++++|.++| ++|++|||+++ +.+.+... |+..+.++.++++++|+||+||| |+++.+++.+ +.+.+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~vl~~---l~~~~ 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEALIP---FKEYI 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHHHHH---HHhhc
Confidence 8999999999998 78999999864 66777654 88888899999999999999999 4678888763 77777
Q ss_pred CCCCEEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCCC---HHhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCe
Q psy764 76 KPGVIVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGG---TKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNI 148 (286)
Q Consensus 76 ~~g~ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g~---~~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v 148 (286)
.++++||++ +++++.+.+++. ..+ +|+.+. .+.+..+.++++++++ ++.++.++++|+.+|..+
T Consensus 90 ~~~~liIs~~aGi~~~~l~~~~----~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 160 (279)
T PRK07679 90 HNNQLIISLLAGVSTHSIRNLL----QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVS 160 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHc----CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEE
Confidence 788999996 788777666532 222 233333 3455556667888876 568899999999999866
Q ss_pred E------e--cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccC
Q psy764 149 V------H--CGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNV 219 (286)
Q Consensus 149 ~------~--~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~ 219 (286)
+ + ++..|+|.++ ++.++.++.|+ +++.|+|++++.+++..+..++ .........|..
T Consensus 161 ~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~---- 226 (279)
T PRK07679 161 VVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSI---- 226 (279)
T ss_pred EeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 5 5 5666777764 56666666666 8999999999999998854333 322211111122
Q ss_pred CCCCCC-CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 220 PASNNY-NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 220 ~~~~~~-~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
..+++ +|+|++.. .++..++.|+.--+.+++.+.++++.+.|
T Consensus 227 -l~~~v~spgg~t~~-------gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 227 -LRKEITSPGGTTEA-------GIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred -HHHhcCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 24555 78887776 56666778999999999999999998865
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.85 E-value=4e-20 Score=171.28 Aligned_cols=189 Identities=25% Similarity=0.285 Sum_probs=153.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------cC-CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||+++|.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+||.|+|...+
T Consensus 14 ~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~ 93 (495)
T PRK07531 14 VIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLD 93 (495)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHH
Confidence 38999999999999999999999998765422 13 67788999999999999999999887
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCC---HhhHHHH
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKA 137 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~ 137 (286)
++..+.+ .+.+.++++ .||++||..+..+ ++.+.+...+..++++|+... ..+.++.+++|+ ++.++++
T Consensus 94 vk~~l~~--~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~ 165 (495)
T PRK07531 94 LKRRVLA--EIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRA 165 (495)
T ss_pred HHHHHHH--HHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHH
Confidence 7876543 254445444 5778888877644 666777677778999997732 234678899987 7899999
Q ss_pred HHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHccCCCccc
Q psy764 138 KPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMG-VAEAMNLGVKLGMNAKLLSDVINTSSGRCWS 205 (286)
Q Consensus 138 ~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~-~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~ 205 (286)
+++++.+|+++++++ |.++|++..-+..+ +.|++.++++.|++++++.++++.+.+.+|.
T Consensus 166 ~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 166 KEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 999999999999987 46777777777777 4999999999999999999999998887775
No 38
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.83 E-value=1.1e-19 Score=161.57 Aligned_cols=249 Identities=18% Similarity=0.139 Sum_probs=173.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----------------cCCHHHHhhcCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----------------ALSLSTLASGAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~e~~~~adivi~~v~~~~~~~~v 64 (286)
||+.+|..|+++||+|++|||++. .+.+.+.|... ..+. +.+..+|+||+|+|++ +..++
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~-~~~~~ 89 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSA-ATADA 89 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCc-chHHH
Confidence 899999999999999999999754 46666555432 3344 5678999999999975 56777
Q ss_pred hcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec--c---CCCCHHhh---hcCceEEEecCCHhhHHH
Q psy764 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA--P---VSGGTKAA---QEATLTFMVGGDKSSLEK 136 (286)
Q Consensus 65 ~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~--p---v~g~~~~a---~~g~l~~~~gg~~~~~~~ 136 (286)
+.. +.+.+.++++|+++++. ....+.+.+.+.+ ..++++ | +..+|... ..|.+.+. +.+.+++
T Consensus 90 ~~~---l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~---~~~~~~~ 160 (341)
T PRK08229 90 AAA---LAGHARPGAVVVSFQNG-VRNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGALAIE---ASPALRP 160 (341)
T ss_pred HHH---HHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCceEec---CCchHHH
Confidence 764 77777888999988653 3344555555543 234444 2 23333333 24554332 3355789
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVT--------------------MMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~--------------------~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
+.++|+..+.++.+.++++.+...|++.|.+.... ..++.|++.++++.|++++.+..+.
T Consensus 161 ~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~ 240 (341)
T PRK08229 161 FAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPLP 240 (341)
T ss_pred HHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccCCCC
Confidence 99999999999999999999999999999744433 3789999999999999987654433
Q ss_pred HccC-----CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH------------HHHHHHhhcCCCchHHHHHH
Q psy764 197 NTSS-----GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK------------LAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 197 ~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~------------~~~~~a~~~g~~~p~~~~~~ 259 (286)
.++. ..++..+...+ .+...++.. ...+.||+. ++.+.++++|+++|..+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~ 310 (341)
T PRK08229 241 PAWIPRLLRLPDPLFRRLAG-------RMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLC 310 (341)
T ss_pred hhhhhhhhcCChHHHHHHHH-------HhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHH
Confidence 3221 11111111100 111222221 346899999 79999999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy764 260 SIYKRLMDKGCQD 272 (286)
Q Consensus 260 ~~~~~a~~~g~g~ 272 (286)
++++.+.+.|...
T Consensus 311 ~~~~~~~~~~~~~ 323 (341)
T PRK08229 311 ALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHhCCCcC
Confidence 9999998877544
No 39
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=7.3e-19 Score=155.55 Aligned_cols=268 Identities=11% Similarity=-0.014 Sum_probs=190.8
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch-----HHHHHHHc--------------CCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD-----ASQTLAKE--------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v 55 (286)
+|+++|..|.++| |+|.+|.|+++ .++.+.+. ++..++++.++++++|+||++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 6999999999998 89999999986 36666543 2455788899999999999999
Q ss_pred CChhHHHHHhcCCccccc--cCCCCCEEEEcCCCCc-hH------HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEE
Q psy764 56 PASQDVLDAYDGSDGILK--HAKPGVIVIDSSTVDP-QV------PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFM 126 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~--~l~~g~ivid~st~~p-~~------~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~ 126 (286)
| ++.+++++.. +.+ .+.++.++|.++.... .+ ++-+.+.+ ...+.++.+|.+..+......+..++
T Consensus 102 P-sq~l~~vl~~---l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-~~~~~~LsGPs~A~Eva~~~pt~~vi 176 (365)
T PTZ00345 102 P-HQFLESVLSQ---IKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL-GIPCCALSGANVANDVAREEFSEATI 176 (365)
T ss_pred C-hHHHHHHHHH---hccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh-CCCeEEEECCCHHHHHHcCCCcEEEE
Confidence 9 5899999986 666 6667778888775432 22 22223333 23455677787777777777887888
Q ss_pred ecCCHhhHHHHHHHHHHhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcC--C
Q psy764 127 VGGDKSSLEKAKPILKCMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLG--M 187 (286)
Q Consensus 127 ~gg~~~~~~~~~~ll~~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~G--l 187 (286)
++-|.+..+.++.+|+.-..+++...+ +.-+.++| +..|+..+.+..++.|+.++++++| .
T Consensus 177 as~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~ 256 (365)
T PTZ00345 177 GCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNV 256 (365)
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888888888999999876666655444 23466666 7799999999999999999999996 5
Q ss_pred CHHHHHHHHHcc----CCCcccccccCCCCCcccc---CCCCCCCCC--CccchhHHHHHHHHHHHHhhcCC--CchHHH
Q psy764 188 NAKLLSDVINTS----SGRCWSSEVYNPVPGVLSN---VPASNNYNG--GFKISLLAKDMKLAEDLANRCTA--QTDLSK 256 (286)
Q Consensus 188 ~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~---~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~--~~p~~~ 256 (286)
++++++++..-+ ++.| ++|+..+..+... .....-... ...+..+....+.+.++++++++ ++|+++
T Consensus 257 ~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~~~Pi~~ 334 (365)
T PTZ00345 257 MDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKEFPLFT 334 (365)
T ss_pred CccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 899998876655 4555 6665433222210 000000000 02345677888899999999999 899999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 257 LATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 257 ~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
++++++. ++.+...+++.+.
T Consensus 335 ~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 335 VTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred HHHHHHh-------CCCCHHHHHHHHH
Confidence 9999873 4455555555543
No 40
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.81 E-value=5.8e-19 Score=156.46 Aligned_cols=270 Identities=12% Similarity=0.118 Sum_probs=186.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|..|+++| +|.+|.|+++..+.+++.+ +...+++.++++++|+||+|+| ++.+++++.
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp-s~~~~~vl~ 95 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP-SHGFRGVLT 95 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC-HHHHHHHHH
Confidence 7999999999999 6899999999888887542 2345678888999999999999 578999998
Q ss_pred CCccccccCCCCCEEEEcCCCCch-HH----HHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQ-VP----QTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~-~~----~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
. +.+.+.+++++|.++..... +. +.+.+.+......++..|.+.........+..++.+.+++..+.++++|
T Consensus 96 ~---i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf 172 (341)
T PRK12439 96 E---LAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLF 172 (341)
T ss_pred H---HHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 5 77778788888877765443 22 2233333222233555664444333333444455566777778899999
Q ss_pred HHhcCCeEecCCc---chHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----C
Q psy764 142 KCMGRNIVHCGDS---GNGQV--------------AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----S 200 (286)
Q Consensus 142 ~~~g~~v~~~g~~---g~a~~--------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~ 200 (286)
+.-+.+++...++ .-+.+ +++..|.....+..++.|+.++++++|.++++++++..-+ +
T Consensus 173 ~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~T 252 (341)
T PRK12439 173 RTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVT 252 (341)
T ss_pred CCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhh
Confidence 8877666555542 12222 3366778778888999999999999999999998876655 6
Q ss_pred CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYE 280 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~ 280 (286)
+.|..++|+..+..+.++...+........+..+...++.+.++++++++++|+++++++++ +++.|...+++
T Consensus 253 c~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~~~~~~~~~ 325 (341)
T PRK12439 253 CTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHGSTVEQAYR 325 (341)
T ss_pred ccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHH
Confidence 66766777654333322111111001112356678888999999999999999999999987 35566666665
Q ss_pred HHh
Q psy764 281 FLK 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+-
T Consensus 326 ~l~ 328 (341)
T PRK12439 326 GLI 328 (341)
T ss_pred HHh
Confidence 543
No 41
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.80 E-value=8e-19 Score=154.29 Aligned_cols=256 Identities=12% Similarity=0.024 Sum_probs=181.2
Q ss_pred ccHHHHHHHHhCC--------CcEEEEcC-----CchHHHHHHHc--------C------CcccCCHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQG--------HDVIVYDK-----NTDASQTLAKE--------G------ANMALSLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~~~adivi~~ 54 (286)
.|+++|..|+++| |+|.+|.| +++-.+.+.+. | ++.+++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 6999999999999 99999998 44444544432 2 34567899999999999999
Q ss_pred cCChhHHHHHhcCCccccccCCCCCEEEEcCCCC-ch--HHHHHHHHHH---hcCCceEeccCCCCHHhhhcCceEEEec
Q psy764 55 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD-PQ--VPQTLSNLAR---EKQITFLDAPVSGGTKAAQEATLTFMVG 128 (286)
Q Consensus 55 v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~-p~--~~~~~~~~~~---~~g~~~~~~pv~g~~~~a~~g~l~~~~g 128 (286)
+|+ +.+++++.. +.+.+++++++|.++... +. +.+.+.+.+. ...+.++.+|.+.........+.+++++
T Consensus 90 VPs-~~i~~vl~~---l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~~~ia~ 165 (342)
T TIGR03376 90 IPH-QFLEGICKQ---LKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSETTVGY 165 (342)
T ss_pred CCh-HHHHHHHHH---HHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCceEEEEe
Confidence 995 789999885 777888888999887654 33 2223333222 2345567777777777767777777777
Q ss_pred CC----HhhHHHHHHHHHHhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy764 129 GD----KSSLEKAKPILKCMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLGM 187 (286)
Q Consensus 129 g~----~~~~~~~~~ll~~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~Gl 187 (286)
.+ .+..+.++.+|+.-..+++...+ +.-+.++| +..|+..+.+..++.|+.++++.+|-
T Consensus 166 ~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~ 245 (342)
T TIGR03376 166 RDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFP 245 (342)
T ss_pred CCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77 78888888888865555554444 23466666 67899999999999999999999999
Q ss_pred CHH--HHHHHHHcc----CCCcccccccCCCCCccc-cCCCCCCCCC--CccchhHHHHHHHHHHHHhhcCCC--chHHH
Q psy764 188 NAK--LLSDVINTS----SGRCWSSEVYNPVPGVLS-NVPASNNYNG--GFKISLLAKDMKLAEDLANRCTAQ--TDLSK 256 (286)
Q Consensus 188 ~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~~~-~~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~~--~p~~~ 256 (286)
+++ +++++..-+ ++.| ++++..+..+.+ +...+.-... ...+..+....+.+.+++++.+++ +|+++
T Consensus 246 ~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~~~Pi~~ 323 (342)
T TIGR03376 246 TGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDEFPLFE 323 (342)
T ss_pred CCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCcCCCHHH
Confidence 887 887765544 4444 566543322221 1110000000 123455577778899999999999 99999
Q ss_pred HHHHHHH
Q psy764 257 LATSIYK 263 (286)
Q Consensus 257 ~~~~~~~ 263 (286)
++++++.
T Consensus 324 ~vy~il~ 330 (342)
T TIGR03376 324 AVYQILY 330 (342)
T ss_pred HHHHHHh
Confidence 9999874
No 42
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.79 E-value=5.8e-17 Score=139.77 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=140.9
Q ss_pred CccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+||+++|.+|.++|+ +|++|||++++.+.+.+.|+. .+.++.++. ++|+||+|+|. ..+.+++.+ +.+ +++
T Consensus 10 ~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~~~---l~~-l~~ 83 (275)
T PRK08507 10 LMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEILPK---LLD-IKE 83 (275)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHHHH---Hhc-cCC
Confidence 389999999999996 799999999998888777764 455777766 49999999996 566777764 777 888
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCC----HHhhh----cCceEEEec---CCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGG----TKAAQ----EATLTFMVG---GDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~----~~~a~----~g~l~~~~g---g~~~~~~~~~~ll~~~g 145 (286)
+++|+|++++.+...+.+.+. .+..|+.+ |+.|+ |..+. .|..+++++ ++++.++.++++|+.+|
T Consensus 84 ~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G 160 (275)
T PRK08507 84 NTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLG 160 (275)
T ss_pred CCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 999999988876666555433 23568876 99875 54432 576677776 35678899999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 146 RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
.+++++++.++...+++++++.. ....++++++. .+.+.+.+.++...
T Consensus 161 ~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 161 MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 99999999999999999999965 44555666642 36667666666543
No 43
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.79 E-value=9.4e-18 Score=142.60 Aligned_cols=143 Identities=15% Similarity=0.243 Sum_probs=113.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHH-----HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDAS-----QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++++|+||+|+|++.++++|+. ++.+.+++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~---GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIAR---TIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHH---HHHhcCCC
Confidence 7899999999999999999987654 458888999999999999999999999999999999984 58889999
Q ss_pred CCEEEEcCCCCchHHHHHHHH---HHhcCC---ceEeccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVPQTLSNL---AREKQI---TFLDAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~---~~~~g~---~~~~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
|++|||+||++|....++-+. +..+.+ .|.++.|-|.+.+ ...++.|. +++.++++.++.++
T Consensus 109 GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~ 184 (341)
T TIGR01724 109 NAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKS 184 (341)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC----ceeeeccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999887665 222322 3444445554433 11233222 57888999999999
Q ss_pred hcCCeEecC
Q psy764 144 MGRNIVHCG 152 (286)
Q Consensus 144 ~g~~v~~~g 152 (286)
.++..+.+-
T Consensus 185 ~~~~~~~~p 193 (341)
T TIGR01724 185 TGKKAYVVP 193 (341)
T ss_pred hCCCeeecc
Confidence 999877553
No 44
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1e-17 Score=155.24 Aligned_cols=177 Identities=17% Similarity=0.282 Sum_probs=142.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC-------------CcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g-------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|.+|+++||+|++||++++++++ +.+.| ++.+.+++++ .+||+||.|||
T Consensus 17 ~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-~~aDlViEav~ 95 (507)
T PRK08268 17 AMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-ADCDLVVEAIV 95 (507)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-CCCCEEEEcCc
Confidence 38999999999999999999999998776 34445 5777888764 59999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEE-EEcCCCCchHHHHHHHHHHh----cCCceEe-ccCCCCHHhhhcCceEEEecC-
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIV-IDSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGG- 129 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~iv-id~st~~p~~~~~~~~~~~~----~g~~~~~-~pv~g~~~~a~~g~l~~~~gg- 129 (286)
.+.+++..+++ .+....+++.++ .|+||+++. ++++.+.. .|++|++ +|++ .++.+++|
T Consensus 96 E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------~LvEvv~g~ 161 (507)
T PRK08268 96 ERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------KLVEVVSGL 161 (507)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------eeEEEeCCC
Confidence 99999998764 244445678888 489999986 34444332 3888998 7777 47888886
Q ss_pred --CHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 130 --DKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 130 --~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
+++.++++.++++.+|+.++++++ .| ++.|-+.. ..++|++.++++.|++++++.+++..+.|
T Consensus 162 ~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 162 ATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILREAAG 227 (507)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 789999999999999999999996 56 34455443 37899999999999999999999976544
No 45
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=1.7e-17 Score=142.30 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=175.4
Q ss_pred CccHHHHHHHHhCCC----cEEEEcCCchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGH----DVIVYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||.+++++|.++|+ +|++|||++++.+.+.+ .|+..+.+..+++++||+||+||| |+++++|+.+ +.+.+
T Consensus 12 ~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~~---l~~~~ 87 (272)
T PRK12491 12 NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVINQ---IKDQI 87 (272)
T ss_pred HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHHH---HHHhh
Confidence 389999999999885 69999999999988875 688888889999999999999999 5899999974 77777
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
+++++||+.-...+- .++.+.+.. ..+++ -+| ..+.....|...+..+. +++..+.++.+|+.+|.. +.+.
T Consensus 88 ~~~~lvISi~AGi~i--~~l~~~l~~-~~~vvR~MP--N~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 88 KNDVIVVTIAAGKSI--KSTENEFDR-KLKVIRVMP--NTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred cCCcEEEEeCCCCcH--HHHHHhcCC-CCcEEEECC--ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEc
Confidence 788899986544332 334444432 12222 334 44555566764444433 355678899999999984 6665
Q ss_pred C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCc
Q psy764 153 D--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGF 229 (286)
Q Consensus 153 ~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f 229 (286)
+ .....++--+...+++.++.++.++ +.+.|++.++..+++.++..++ ........-| ..+.+...+|++
T Consensus 162 E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p----~~l~~~V~sPGG 234 (272)
T PRK12491 162 EKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHP----GELKDMVCSPGG 234 (272)
T ss_pred HHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHhCCCCch
Confidence 4 4566666666677788889888888 8999999999999988763222 2211111111 122344557777
Q ss_pred cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 230 KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 230 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
++.. .++..++.|+.--+.+++.+.++++.+.|
T Consensus 235 tT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 235 TTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 7666 56677888999999999999999887754
No 46
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.77 E-value=1.8e-17 Score=148.44 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=138.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||+++|+.|.++||+|++|||+.. +++.+++++||+||+|+|.. ....++.+ +.+ +++|++
T Consensus 109 lmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~---l~~-l~~~~i 170 (374)
T PRK11199 109 QLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIAR---LPP-LPEDCI 170 (374)
T ss_pred hhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHH---HhC-CCCCcE
Confidence 4899999999999999999998631 35678889999999999975 55666653 667 889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQ 158 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~ 158 (286)
|+|+||+++.....+.+... ..|+ .+|++|+......+..++++++ +++.++.+.++++.+|.+++++++.++..
T Consensus 171 v~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~ 247 (374)
T PRK11199 171 LVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQ 247 (374)
T ss_pred EEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHH
Confidence 99999998888777765432 2588 7899998776667777777777 56788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSD 194 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~ 194 (286)
.+++++-+ .++.+++++..+++ .|.+.+.+.+
T Consensus 248 ~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 248 NMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999833 67778888888877 7888777644
No 47
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=1.8e-17 Score=143.93 Aligned_cols=181 Identities=15% Similarity=0.230 Sum_probs=136.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------c-----------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------E-----------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------~-----------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
+||..+|.+|+++||+|++||+++++++++.+ . +++.+.++.+++++||+||.|+|
T Consensus 11 ~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp 90 (288)
T PRK09260 11 VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVP 90 (288)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEecc
Confidence 38999999999999999999999998877542 1 23457788899999999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEE-EEcCCCCchHHHHHHHHHH-hcCCceEeccCCCCHHhhhcCceEEEecC---CH
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIV-IDSSTVDPQVPQTLSNLAR-EKQITFLDAPVSGGTKAAQEATLTFMVGG---DK 131 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~iv-id~st~~p~~~~~~~~~~~-~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~ 131 (286)
++.+++..+.+ .+.+.+++++++ +++||++|....+..+... ..|.+|+ +|+.++ .++.+++| ++
T Consensus 91 e~~~~k~~~~~--~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve~v~g~~t~~ 160 (288)
T PRK09260 91 EKLELKKAVFE--TADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVELIRGLETSD 160 (288)
T ss_pred CCHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEEEeCCCCCCH
Confidence 98877766543 366677888866 7899999876554433211 1377888 788764 57889998 89
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
+.+++++++++.+|++++++++. .|. +.|-+.. ..++|++.+.+.--.+++++-.++..+
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~-~Gf----~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEF-PGF----VTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCc-ccH----HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 99999999999999999999862 222 2243333 356899888876446788887776544
No 48
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.75 E-value=1.6e-16 Score=144.92 Aligned_cols=188 Identities=17% Similarity=0.258 Sum_probs=144.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHH-HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||+++|..|.++|++|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|. ..+.+++.. +.+.+++++
T Consensus 11 ~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl~~---l~~~l~~~~ 86 (437)
T PRK08655 11 GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVIKE---VAPHVKEGS 86 (437)
T ss_pred HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHHHH---HHhhCCCCC
Confidence 3899999999999999999999988865554 45887778889999999999999996 567788764 777888999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcc
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSG 155 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g 155 (286)
+|+|++++.+...+.+.+.+ ..+..|+.+ |++|.......+...+++.+ +++.+++++++|+.+|.+++++++..
T Consensus 87 iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~ 165 (437)
T PRK08655 87 LLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEE 165 (437)
T ss_pred EEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHH
Confidence 99999999888888777664 347789976 99886555566776777765 47788999999999999999888754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+...+ .+.....++.+++.+..+ .+.|++.+....+.+
T Consensus 166 HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 166 HDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFAS 203 (437)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhcC
Confidence 44444 333344444445555444 677999887655543
No 49
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.75 E-value=3.2e-17 Score=151.45 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=135.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++||+|++||++++++++. .+.| ++.+++++++ .+||+||.|+|.
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l-~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL-ADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-CCCCEEEEcCcC
Confidence 89999999999999999999999987643 3334 4567788664 699999999999
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHH----HhcCCceEe-ccCCCCHHhhhcCceEEEecC--
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLA----REKQITFLD-APVSGGTKAAQEATLTFMVGG-- 129 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~----~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg-- 129 (286)
+.+++..+++ .+....+++.++. ++||.++. ++++.+ ...|.+|++ +|++. ++.+++|
T Consensus 95 ~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~~---------LvEvv~g~~ 160 (503)
T TIGR02279 95 NLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVMA---------LVEVVSGLA 160 (503)
T ss_pred cHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccCc---------eEEEeCCCC
Confidence 9999988764 2444455555443 45555554 333333 235788998 78773 7899999
Q ss_pred -CHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 130 -DKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 130 -~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
+++.++++.++++.+|+.++++++ .|. +.|-+. ...++|++.+.++.+++++++.+++..+.|
T Consensus 161 Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~~~~G 225 (503)
T TIGR02279 161 TAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALRDGAG 225 (503)
T ss_pred CCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 899999999999999999999996 553 344433 258899999999999999999999986533
No 50
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.73 E-value=2.8e-17 Score=141.95 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=128.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||+++|..|.++|++|++|||++++.+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++.+ +.+.+.++.
T Consensus 10 ~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~~~---l~~~l~~~~ 85 (279)
T PRK07417 10 LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPSEQ---LIPALPPEA 85 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHHHH---HHHhCCCCc
Confidence 489999999999999999999999998888877743 233334678899999999995 566677653 777788899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCH-Hhhhc-------CceEEEe---cCCHhhHHHHHHHHHHhcCC
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT-KAAQE-------ATLTFMV---GGDKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~-~~a~~-------g~l~~~~---gg~~~~~~~~~~ll~~~g~~ 147 (286)
+|+|++++++...+.+.+. ...|+. +|++|++ .+.+. +...+++ +++++.++.++++++.+|.+
T Consensus 86 ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~ 161 (279)
T PRK07417 86 IVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSK 161 (279)
T ss_pred EEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999987766554432 335887 7999976 33332 3333333 24678899999999999999
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHH
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMG 174 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~ 174 (286)
++++++.+....+++++|+..+.....
T Consensus 162 ~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 162 IYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred EEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 999999999999999999887655443
No 51
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.72 E-value=2.3e-16 Score=134.83 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=155.1
Q ss_pred CccHHHHHHHHhCCCc---EEEEcCCchHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGHD---VIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||++++++|.+.|++ +.+|||++++.+.+.+. +...+.++.++++++|+||+|+| |+++++++.. + . +
T Consensus 10 ~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~---l-~-~ 83 (258)
T PRK06476 10 AITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA---L-R-F 83 (258)
T ss_pred HHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH---h-c-c
Confidence 3899999999999864 58999999999888765 57778899999999999999999 6788998864 3 2 4
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCc-
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS- 154 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~- 154 (286)
.++++||+++ .+.+...+.+.+......+..+|+.. .....+. +.+++++ +.++++|+.+|..++ +++.
T Consensus 84 ~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~--~a~~~g~-t~~~~~~----~~~~~l~~~lG~~~~-~~~e~ 153 (258)
T PRK06476 84 RPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPF--VAERKGV-TAIYPPD----PFVAALFDALGTAVE-CDSEE 153 (258)
T ss_pred CCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCCh--hhhCCCC-eEecCCH----HHHHHHHHhcCCcEE-ECChH
Confidence 6789999755 44555666666544445566778732 2223343 5566553 588999999998665 4421
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccc-cccCCCCCccccCCCCCCCCCCccc
Q psy764 155 --GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSS-EVYNPVPGVLSNVPASNNYNGGFKI 231 (286)
Q Consensus 155 --g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~f~~ 231 (286)
...+++ . ...+.....+.++..++++.|+|+++..+++.....++..+ ...... -+..+.+...+|++++
T Consensus 154 ~~d~~~a~---~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~---~~~~l~~~v~spgGtT 226 (258)
T PRK06476 154 EYDLLAAA---S-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKT---DFSALSREFSTKGGLN 226 (258)
T ss_pred hccceeeh---h-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHhCCCCCchH
Confidence 111111 0 12333334677888889999999999999988653222211 000100 0011223445677766
Q ss_pred hhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 232 SLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 232 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.. .++..++.|+.-.+.+++...++++
T Consensus 227 ~~-------gl~~le~~~~~~~~~~a~~aa~~r~ 253 (258)
T PRK06476 227 EQ-------VLNDFSRQGGYAALTDALDRVLRRI 253 (258)
T ss_pred HH-------HHHHHHHCChHHHHHHHHHHHHHHh
Confidence 66 5566677788777777777766655
No 52
>PRK07680 late competence protein ComER; Validated
Probab=99.72 E-value=2.3e-16 Score=135.92 Aligned_cols=185 Identities=9% Similarity=0.138 Sum_probs=135.7
Q ss_pred ccHHHHHHHHhCCC----cEEEEcCCchHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH----DVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||+++++.|.++|+ +|.+|||++++.+.+.+. |+....++.+++.++|+||+|+| ++++++++.. +.+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~~---l~~~l 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQK---LAPHL 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHHH---HHhhc
Confidence 89999999999994 799999999988887664 67778899999999999999999 5788999874 77778
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec--CCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
.++++||+++... ..+.+.+.+..+.+++++ +.+..+..|...++.| .+.+.++.++++|+.+|. ++++.+
T Consensus 87 ~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 87 TDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred CCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEECh
Confidence 8889999998644 355565555433344543 3445566787655665 356778899999999996 566654
Q ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 154 S--GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 154 ~--g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
. .....+-.+...+++.++.++.++. .++.|+++++..+++...
T Consensus 160 ~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 160 DITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 1 2223333334456777777777763 234899999999887765
No 53
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.72 E-value=3.2e-16 Score=138.49 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=159.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHh-hcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLA-SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|..|.++||+|.+|+|+++.++.+.+.+ +....++.+.+ ..+|+||+|+|+ +++++++.
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks-~~~~~~l~ 89 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT-QQLRTICQ 89 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH-HHHHHHHH
Confidence 799999999999999999999998888776531 12345666766 589999999995 68999987
Q ss_pred CCccccc-cCCCCCEEEEcCCCCchH-----HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHH
Q psy764 67 GSDGILK-HAKPGVIVIDSSTVDPQV-----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPI 140 (286)
Q Consensus 67 ~~~~l~~-~l~~g~ivid~st~~p~~-----~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 140 (286)
. +.+ .+.+++.||.++...... .+.+.+.+..+.+..+.+|.+.........+...+.|.+.+..+++..+
T Consensus 90 ~---l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (326)
T PRK14620 90 Q---LQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISK 166 (326)
T ss_pred H---HHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHH
Confidence 5 666 666666555554443221 2223333333333344444322222222233344555556555666666
Q ss_pred HHHhcCCeEecCCcchHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC--CHHHHH------HH
Q psy764 141 LKCMGRNIVHCGDSGNGQVAKLC-----------------NNMLLGVTMMGVAEAMNLGVKLGM--NAKLLS------DV 195 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~~l~~~~Gl--~~~~~~------~~ 195 (286)
|+.-+.+++...++-.....|++ .|.....+..++.|+..++++.|. ++++++ ++
T Consensus 167 l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl 246 (326)
T PRK14620 167 LSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDL 246 (326)
T ss_pred HCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhh
Confidence 66656555554454333333333 255556678899999999999987 889885 44
Q ss_pred HHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCch
Q psy764 196 INTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDF 275 (286)
Q Consensus 196 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 275 (286)
+. ++.+..++++..+..+..+.+..+.....-+.-....-+..+.++++++|+++|+.+.+++++ +++.+.
T Consensus 247 ~~--t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-------~~~~~~ 317 (326)
T PRK14620 247 IL--TCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL-------YENISL 317 (326)
T ss_pred hh--eecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCH
Confidence 42 222223333331111111111111000111223455566789999999999999999999986 345555
Q ss_pred hHHHHH
Q psy764 276 SYIYEF 281 (286)
Q Consensus 276 ~~~~~~ 281 (286)
..+++.
T Consensus 318 ~~~~~~ 323 (326)
T PRK14620 318 EKTISV 323 (326)
T ss_pred HHHHHH
Confidence 555544
No 54
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.71 E-value=4.2e-16 Score=131.32 Aligned_cols=243 Identities=13% Similarity=0.131 Sum_probs=174.9
Q ss_pred CccHHHHHHHHhCC----CcEEEEcCCchHHHHHH-HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQG----HDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G----~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
.||.+|+..|.++| .+|++.||++++.+.+. +.|+..+++..++++++|+||+||+ |+.+++|+.. +.+ .
T Consensus 11 ~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl~~---l~~-~ 85 (266)
T COG0345 11 NMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVLSK---LKP-L 85 (266)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHHHH---hhc-c
Confidence 38999999999999 58999999999997554 4577767888999999999999999 7899999986 555 6
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.++++||...... +...+.+++. +..++- +| ..+.....|...+..+. +++..+.+..+|+.+|. ++++.
T Consensus 86 ~~~~lvISiaAGv--~~~~l~~~l~--~~~vvR~MP--Nt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~ 158 (266)
T COG0345 86 TKDKLVISIAAGV--SIETLERLLG--GLRVVRVMP--NTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVE 158 (266)
T ss_pred cCCCEEEEEeCCC--CHHHHHHHcC--CCceEEeCC--ChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEec
Confidence 7899999654333 3345555554 344442 34 44555566774444433 56777899999999998 56665
Q ss_pred C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCc
Q psy764 153 D--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGF 229 (286)
Q Consensus 153 ~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f 229 (286)
+ .....++--+...+++.++.++.++ +.+.|++.++.++++..+..++ .+.......|. .+.++..+|++
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~----~Lr~~VtSPGG 231 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPA----ELRDQVTSPGG 231 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhCcCCCc
Confidence 4 3455555555666688888888888 9999999999999988764322 22221111121 22355567888
Q ss_pred cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 230 KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 230 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
++....+++ ++.|+..-+.+++.+.++++.+.|
T Consensus 232 tTiagl~~l-------e~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 232 TTIAGLRVL-------EEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred hHHHHHHHH-------HHhChHHHHHHHHHHHHHHHHHhc
Confidence 888755554 478899999999999999988755
No 55
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=2.2e-16 Score=138.03 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=136.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-------HH-----------HHHHcC-------------CcccCC--HHHHhhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-------SQ-----------TLAKEG-------------ANMALS--LSTLASGA 48 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-------~~-----------~l~~~g-------------~~~~~s--~~e~~~~a 48 (286)
||..+|..++.+|++|.+||++++. ++ .+.+.| ++.+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 11 111112 333433 67889999
Q ss_pred cEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHH----hcCCceEecc-------CCCCHHh
Q psy764 49 EFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAR----EKQITFLDAP-------VSGGTKA 117 (286)
Q Consensus 49 divi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~----~~g~~~~~~p-------v~g~~~~ 117 (286)
|+||-|||.+.+++..+++ .+.+.+++++++ +||+++....++++.+. -.|.+|++.| |.+++
T Consensus 81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~-- 154 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR--WLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD-- 154 (314)
T ss_pred CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC--
Confidence 9999999999999988875 366667788777 67777877888888763 2467888766 44333
Q ss_pred hhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 118 a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+++++.++++.++++.+|+.++++++.+ |. ++...+...++|++.++++.|++++++.+++.
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~ 216 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAIR 216 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5688999999999999999999999754 32 34555677899999999999999999999988
Q ss_pred ccCC
Q psy764 198 TSSG 201 (286)
Q Consensus 198 ~~~~ 201 (286)
.+.+
T Consensus 217 ~g~G 220 (314)
T PRK08269 217 TGFG 220 (314)
T ss_pred hCCC
Confidence 7654
No 56
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.69 E-value=2.1e-15 Score=129.62 Aligned_cols=242 Identities=15% Similarity=0.144 Sum_probs=160.3
Q ss_pred ccHHHHHHHHhCC---CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG---HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||+.++..|.++| ++|.+|||++++.+.+.+. |+....++.++++++|+||+|+|. .++++++.. +.+.+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~---l~~~~-- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE---LKGQL-- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH---HHhhc--
Confidence 7899999999999 7899999999998888775 888888999999999999999995 678998875 55544
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC-C
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG-D 153 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g-~ 153 (286)
+++||.+++..+. ..+.+.+ ..+.+++. .| ..|.....+...+..+. +++.++.++.+|+.+|. ++++. +
T Consensus 87 ~~~vvs~~~gi~~--~~l~~~~-~~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e 160 (267)
T PRK11880 87 DKLVVSIAAGVTL--ARLERLL-GADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDE 160 (267)
T ss_pred CCEEEEecCCCCH--HHHHHhc-CCCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECCh
Confidence 5778877665543 2344443 23445554 34 34444445554445544 68889999999999997 55665 3
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCcc
Q psy764 154 --SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 154 --~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
...+.++--....+.+.++.++.++ +.+.|+++++..+++.....+. .........|. ...+..-.|+.+
T Consensus 161 ~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l~~~v~tpgG~ 233 (267)
T PRK11880 161 KQMDAVTAVSGSGPAYVFLFIEALADA---GVKLGLPREQARKLAAQTVLGAAKLLLESGEHPA----ELRDNVTSPGGT 233 (267)
T ss_pred HhcchHHHHhcChHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhCCCCcHH
Confidence 2233333222233344444444444 7889999999988887652111 11110000011 111222244544
Q ss_pred chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 231 ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 231 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+.. .++..++.|++..+.+++.+.++++.+.+
T Consensus 234 t~~-------gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 234 TIA-------ALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHH-------HHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 444 67788889999999999999999998864
No 57
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.65 E-value=5.1e-15 Score=129.99 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=127.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----C--------------CcccCCHHHHhhcCcEEEEecCChhHH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----G--------------ANMALSLSTLASGAEFIISMLPASQDV- 61 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~adivi~~v~~~~~~- 61 (286)
||+++|..|+++|++|++||+++++.+.+.+. | +..++++.+++++||+||+|+|.+.++
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999887766541 2 245677888899999999999976544
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHH
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAK 138 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~ 138 (286)
..++.. +.+.++++.+| .++|.... ..++++.+.. ..+++..-.+..+ .. +.+..++.| +++.++.++
T Consensus 95 ~~v~~~---l~~~~~~~~ii-~s~tsg~~-~~~l~~~~~~-~~~~ig~h~~~p~-~~--~~l~~i~~g~~t~~~~~~~v~ 165 (311)
T PRK06130 95 RDVFAR---LDGLCDPDTIF-ATNTSGLP-ITAIAQAVTR-PERFVGTHFFTPA-DV--IPLVEVVRGDKTSPQTVATTM 165 (311)
T ss_pred HHHHHH---HHHhCCCCcEE-EECCCCCC-HHHHHhhcCC-cccEEEEccCCCC-cc--CceEEEeCCCCCCHHHHHHHH
Confidence 455543 44444455444 34443333 3455555532 2233332212211 11 224455555 588999999
Q ss_pred HHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 139 PILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 139 ~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
++|+.+|+.++++++...|. ++||++. ..++|++.++++.|+|++++.+++..+.+
T Consensus 166 ~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 166 ALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred HHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999997422233 6777754 46999999999999999999999986654
No 58
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.64 E-value=1e-14 Score=130.32 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=135.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc----ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc-cC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN----MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK-HA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~-~l 75 (286)
+||+++|+.|.++|++|.+|++++++.+.....+.. ..+++.+++++||+||+|+|. +.+.+++.. +.+ .+
T Consensus 10 liG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~---l~~~~l 85 (359)
T PRK06545 10 LIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE---LADLEL 85 (359)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH---HhhcCC
Confidence 489999999999999999999988765544444432 235678889999999999996 578888874 665 47
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHH--------hhhcCceEEEec---CCHhhHHHHHHHHHH
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK--------AAQEATLTFMVG---GDKSSLEKAKPILKC 143 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~--------~a~~g~l~~~~g---g~~~~~~~~~~ll~~ 143 (286)
+++.+|.|+++++....+.+.+. ...+.+|+. +|+.|++. ....+..++++. .+++.++.++++++.
T Consensus 86 ~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~ 164 (359)
T PRK06545 86 KPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSG 164 (359)
T ss_pred CCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 78999999999998877777655 345678998 69888631 222444455664 467889999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
+|..++++++......+.+++....+ +++++ +...+.+.+....+...
T Consensus 165 lGa~~v~~~~~~HD~~~A~vshlPh~-----ia~al--~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 165 TGAKFVVLDAEEHDRAVALVSHLPHI-----LASSL--AARLAGEHPLALRLAAG 212 (359)
T ss_pred cCCEEEECCHHHHhHHHhHhccHHHH-----HHHHH--HHhhccCchHHHhhhcc
Confidence 99998889876666677665555433 22332 56667666666666544
No 59
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.62 E-value=1.5e-14 Score=126.13 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=128.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
.||..+|.+|+++|++|++||+++++.+. +.+.| .....+..+++++||+||.|+|.
T Consensus 14 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e 93 (295)
T PLN02545 14 QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVE 93 (295)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCcc
Confidence 38999999999999999999999987653 33322 12233334678999999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHH-HHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNL-AREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~-~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
+.+++..+.+ .+.+.++++.+|+ ++|++++.+..+.... ..-.|++|++.|..+ .++.++.| +++
T Consensus 94 ~~~~k~~v~~--~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lveiv~g~~t~~e 163 (295)
T PLN02545 94 SEDLKKKLFS--ELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEIIRGADTSDE 163 (295)
T ss_pred CHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEEeCCCCCCHH
Confidence 8888777654 2556677888886 7888877655443221 111356777766543 33555544 789
Q ss_pred hHHHHHHHHHHhcCCeEecCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~-g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.+++++++|+.+|+.++++++. | .++++++.. .++|++.+.+.-..+++++-.++..+
T Consensus 164 ~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~~----~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 164 VFDATKALAERFGKTVVCSQDYPG-----FIVNRILMP----MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999998863 4 244444433 57899998888667888887776544
No 60
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.61 E-value=2.7e-14 Score=120.93 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=157.3
Q ss_pred CCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHH
Q psy764 14 GHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVP 92 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~ 92 (286)
.++|.+|+|++++.+.+.+. |+..+.++.++++++|+||+||+ |+++++++.. +.+.+.++++||+++...+.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~---l~~~~~~~~~ivS~~agi~~-- 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSE---LKSEKGKDKLLISIAAGVTL-- 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHH---HhhhccCCCEEEEecCCCCH--
Confidence 36899999999999888654 88888999999999999999999 7899999875 55556677899977665444
Q ss_pred HHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecCC--cchHHHHHHHHHHH
Q psy764 93 QTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCGD--SGNGQVAKLCNNML 167 (286)
Q Consensus 93 ~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g~--~g~a~~~Kl~~n~~ 167 (286)
..+.+.+.. +..++ -+| ..+.....|...+..+. +++..+.++.+|+.+|. ++++.+ .....++--+.+.+
T Consensus 83 ~~l~~~~~~-~~~ivR~mP--n~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 83 EKLSQLLGG-TRRVVRVMP--NTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred HHHHHHcCC-CCeEEEECC--ChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHH
Confidence 344444432 12222 234 33444456664444443 35567899999999997 455554 45566666677788
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC-cccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHh
Q psy764 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR-CWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~ 246 (286)
.+.++.++.++ +.+.|++++...+++..+..+ ..+......-| ..+.+..-+|++++.. .++..+
T Consensus 159 ~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~----~~l~~~v~spgGtT~~-------gl~~Le 224 (245)
T TIGR00112 159 VFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHP----ALLKDQVTSPGGTTIA-------GLAVLE 224 (245)
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHcCCCCcHHHHH-------HHHHHH
Confidence 88888888887 899999999999998876322 22221111111 1122444467776665 556667
Q ss_pred hcCCCchHHHHHHHHHHHHH
Q psy764 247 RCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 247 ~~g~~~p~~~~~~~~~~~a~ 266 (286)
+.|+.--+.+++.+.++++.
T Consensus 225 ~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 225 EKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred HCChHHHHHHHHHHHHHHhc
Confidence 78888888888888777663
No 61
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.59 E-value=2.7e-14 Score=122.04 Aligned_cols=236 Identities=9% Similarity=0.072 Sum_probs=163.6
Q ss_pred CccHHHHHHHHhCCC----cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 1 MISTLKLFFLQFQGH----DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+||+++++.|.++|. +++++||++++. +.....++.++++++|+||+|+| |+++++++.+ +.+.+.
T Consensus 13 ~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~---i~~~l~ 82 (260)
T PTZ00431 13 KMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE---IKPYLG 82 (260)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhcc
Confidence 389999999998873 499999987642 44556788899999999999999 6889999985 766666
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhc--CCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEec
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
++.+|.++++++....+++ +... .++++ | +.|.....+. ++++.. +++..+.++.+|+.+|. ++.+
T Consensus 83 ~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~m--P--n~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v 153 (260)
T PTZ00431 83 SKLLISICGGLNLKTLEEM---VGVEAKIVRVM--P--NTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGI-IQEI 153 (260)
T ss_pred CCEEEEEeCCccHHHHHHH---cCCCCeEEEEC--C--CchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCc-EEEE
Confidence 6667777888876655543 2211 12232 2 4445555555 444443 45678899999999998 4555
Q ss_pred CC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCC
Q psy764 152 GD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGG 228 (286)
Q Consensus 152 g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
.+ .....++--+...+++.++.++.++ +.+.|++.++..+++..+. |...+......-| ..+.+..-+|+
T Consensus 154 ~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~----~~l~~~v~spg 226 (260)
T PTZ00431 154 KEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPV----QQLKDDVCSPG 226 (260)
T ss_pred ChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHhCCCCC
Confidence 54 4455555556677788888888888 9999999999999988763 2222221111111 12234555777
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+++.. .++..++.|+..-+.+++.+-++++.+.|
T Consensus 227 G~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 227 GITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred hHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 77666 55666788999899999999988887643
No 62
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.59 E-value=9.1e-14 Score=120.97 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=125.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++|++|++||+++++++.+.+ .| ++.+++++ .+++||+||.|+|.
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999988766432 23 34566775 57899999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHHHh----cCCceEe-ccCCCCHHhhhcCceEEEecCCH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGGDK 131 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~~~----~g~~~~~-~pv~g~~~~a~~g~l~~~~gg~~ 131 (286)
+.+++..+.+ ++.+.++++++|+ ++||..+. ++++.+.. .|++|++ .|+++.. .+....++++
T Consensus 94 ~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~v------ei~~g~~t~~ 162 (292)
T PRK07530 94 DETVKRKIFA--QLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLV------ELIRGIATDE 162 (292)
T ss_pred CHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceE------EEeCCCCCCH
Confidence 7676655443 4777788888887 66666553 45554421 2567776 3433221 1122245789
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHcc
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGM-NAKLLSDVINTS 199 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl-~~~~~~~~~~~~ 199 (286)
+.++++.++++.+|+.++++++.+ -+++++++.. .++|++.+..+ |+ +++++-.++..+
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~~----~~~ea~~~~~~-g~~~~~~iD~~~~~g 222 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILLP----MINEAIYTLYE-GVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHHH----HHHHHHHHHHh-CCCCHHHHHHHHHhC
Confidence 999999999999999999988754 5566666544 56788877776 54 788877776543
No 63
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=7e-14 Score=120.98 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=134.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++||+|++||++++..++ +.+.| ++.++++ +.+++||+||-|+|.
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998766 44334 2367778 557999999999999
Q ss_pred hhHHHHHhcCCccccccC-CCCCEEEEcCCCCchHHHHHHHHHHhc--CCceEe-ccCCCCHHhhhcCceEEEecCCHhh
Q psy764 58 SQDVLDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD-APVSGGTKAAQEATLTFMVGGDKSS 133 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l-~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~-~pv~g~~~~a~~g~l~~~~gg~~~~ 133 (286)
+.+++..+++ .+.+.. +++.++++.||..|.+.........++ |.+|++ +|+++.. +++...+++++.
T Consensus 95 ~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------Elv~~~~T~~~~ 166 (286)
T PRK07819 95 DEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------ELVPTLVTSEAT 166 (286)
T ss_pred CHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EEeCCCCCCHHH
Confidence 9999888764 233344 789999998888888766554444444 667776 4555543 556666788999
Q ss_pred HHHHHHHHH-HhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILK-CMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~-~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++++.+++. .+++.++++++ +|. . .|-+ ....++|++.+.+.--.+++++-.++..+.
T Consensus 167 ~~~~~~~~~~~lgk~pv~v~d~pGf--i----~nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 167 VARAEEFASDVLGKQVVRAQDRSGF--V----VNAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred HHHHHHHHHHhCCCCceEecCCCCh--H----HHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999988 59999998876 332 2 2332 344678999888765567888877776543
No 64
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.58 E-value=1.2e-13 Score=121.04 Aligned_cols=161 Identities=17% Similarity=0.306 Sum_probs=122.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.+++..|.+.|+ +|++|||++++.+.+.+.|. ....++.++++++|+||+|+|. ....+++.. +.+.+++
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~~~---l~~~l~~ 92 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVAAE---IAPHLKP 92 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHHHH---HHhhCCC
Confidence 79999999999995 89999999998888877774 3456788889999999999996 456777754 6667788
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCCHH-hhh-------cCceEEEe---cCCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTK-AAQ-------EATLTFMV---GGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~~~-~a~-------~g~l~~~~---gg~~~~~~~~~~ll~~~g 145 (286)
+.+|+|++++.+...+.+.+.+ ..+++|+++ |+.|++. +.. .|...+++ +++++.++.++++++.+|
T Consensus 93 ~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG 171 (307)
T PRK07502 93 GAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALG 171 (307)
T ss_pred CCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999998877776665544 346788986 9987542 111 23333343 567888999999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHH
Q psy764 146 RNIVHCGDSGNGQVAKLCNNML 167 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~ 167 (286)
.+++++++......+-++....
T Consensus 172 ~~~~~~~~~~hD~~~A~~s~lp 193 (307)
T PRK07502 172 ARVEEMDPEHHDLVLAITSHLP 193 (307)
T ss_pred CEEEEcCHHHHhHHHHHHhhHH
Confidence 9999988755666665554443
No 65
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.56 E-value=8.1e-14 Score=120.17 Aligned_cols=240 Identities=10% Similarity=0.038 Sum_probs=153.8
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCc-hHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNT-DASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+++++.|.++| ++|.+|+|++ ++.+.+... +...+.+..++++++|+||+|+| ++.+++++.. +.+.
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~vl~~---l~~~ 87 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPLLKD---CAPV 87 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHHHHH---HHhh
Confidence 8999999999998 7899999864 445555443 34556788899999999999999 6789998875 6677
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEec
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
+.++++||.+....+. .++.+.+.. ..++ -+| ..+.....|...+..+. +++..+.++.+|+.+|. ++++
T Consensus 88 l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MP--N~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 160 (277)
T PRK06928 88 LTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIP--SLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VMTI 160 (277)
T ss_pred cCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeC--ccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EEEE
Confidence 7788888876654333 245554432 2232 334 44555566764443332 35677899999999998 4455
Q ss_pred CC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHccCCCcc-cccccCCCCCccccCCCCCCCCC
Q psy764 152 GD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKL-GMNAKLLSDVINTSSGRCW-SSEVYNPVPGVLSNVPASNNYNG 227 (286)
Q Consensus 152 g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~-Gl~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 227 (286)
.+ .....++--+...+++.++.++.++ +.+. |+++++..+++..+..++. +...... -+..+.+..-+|
T Consensus 161 ~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~----~p~~l~~~v~sp 233 (277)
T PRK06928 161 REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDY----TFSGTIERVATK 233 (277)
T ss_pred chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCC----CHHHHHHhCCCC
Confidence 43 2333333334445578888888888 8888 7999999999887632222 1111111 111223455578
Q ss_pred CccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 228 GFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 228 ~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
++++..+.+- .++ |++--+.+++..-++++.+
T Consensus 234 gGtT~~gl~~-------le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 234 GGITAEGAEV-------IQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred ChHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHH
Confidence 7776664333 333 5555566666666555544
No 66
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.54 E-value=1.2e-13 Score=120.11 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=125.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH--------------cC-------------CcccCCHHHHhhcCcEEEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK--------------EG-------------ANMALSLSTLASGAEFIIS 53 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e~~~~adivi~ 53 (286)
.||+.+|..|+++|++|++||+++++++...+ .| +...++. +++++||+||.
T Consensus 13 ~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 91 (291)
T PRK06035 13 VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVE 91 (291)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEE
Confidence 38999999999999999999999987754321 12 1234455 67789999999
Q ss_pred ecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEe-ccCCCCHHhhhcCceEEEec
Q psy764 54 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLD-APVSGGTKAAQEATLTFMVG 128 (286)
Q Consensus 54 ~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~-~pv~g~~~~a~~g~l~~~~g 128 (286)
|+|.+..++..+.. .+.+.++++++++.. .+.....++++.+... |.+|.+ +|+++... ...+..+
T Consensus 92 av~e~~~~k~~~~~--~l~~~~~~~~il~S~--tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~~g~~T---- 162 (291)
T PRK06035 92 AVPEKLDLKRKVFA--ELERNVSPETIIASN--TSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VVRAALT---- 162 (291)
T ss_pred cCcCcHHHHHHHHH--HHHhhCCCCeEEEEc--CCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE-EeCCCCC----
Confidence 99987655544332 255667778877643 3334445666655432 556665 55555432 1222221
Q ss_pred CCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHcc
Q psy764 129 GDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG-MNAKLLSDVINTS 199 (286)
Q Consensus 129 g~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-l~~~~~~~~~~~~ 199 (286)
+++.++++.++++.+|+.++++++.+.....|+++|+ ++|++.+.+. | .+++++-.++..+
T Consensus 163 -~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~-g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 163 -SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEI-GIATIKDIDEMCKLA 224 (291)
T ss_pred -CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHc-CCCCHHHHHHHHhhc
Confidence 7899999999999999999999988888888887775 5788888766 6 5788887776544
No 67
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.48 E-value=2.4e-12 Score=109.21 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=129.9
Q ss_pred ccHHHHHHHHhCCC---c-EEEEcC-CchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH---D-VIVYDK-NTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~-V~~~dr-~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++++..|.++|+ + +++|+| ++++.+.+.+ .++..+.++.++++++|+||+|+|+ +..++++.. +.+.+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~~~---l~~~~ 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELLAE---LSPLL 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHHHH---HHhhc
Confidence 78999999998873 3 778887 4778888765 4777778899999999999999995 678888874 55555
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceE--EEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT--FMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~--~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
+ +++||+++...... .+.+.+.........+|.+.. ....+... +-..++++..+.++.+|+.+|..++ +.+
T Consensus 91 ~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~-~~e 164 (245)
T PRK07634 91 S-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL-CTE 164 (245)
T ss_pred c-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE-ECH
Confidence 4 67888876654443 344444321122335564433 33344322 2334577888999999999998664 543
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 154 --SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 154 --~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.....++--+...+++.++.++.++ +.+.|+++++..+++...
T Consensus 165 ~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 165 EEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 4455555556666777777777777 899999999998888765
No 68
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.48 E-value=5.4e-12 Score=110.49 Aligned_cols=246 Identities=13% Similarity=0.115 Sum_probs=150.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-------------ccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+|..|+++||+|++|+| +++.+.+.+.|.. ..++..++.+.+|+||+|+|+ .++++++..
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~~~~~~~~~- 87 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-YQLDAAIPD- 87 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-cCHHHHHHH-
Confidence 799999999999999999999 7888887765532 234566667899999999996 467888764
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCCHHhhhcCceEEEecC----CHhhHHHHHHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGG----DKSSLEKAKPI 140 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~~~gg----~~~~~~~~~~l 140 (286)
+.+.+.++++||.+.+.. .....+.+.+.+. ++.++.++..+.-.-...+.-.+.+|. ..+..+.+..+
T Consensus 88 --l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~ 164 (305)
T PRK12921 88 --LKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDA 164 (305)
T ss_pred --HHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHH
Confidence 666677788888765543 2223444444332 233444443331111111222344443 23455677778
Q ss_pred HHHhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--HHHHHHHHH
Q psy764 141 LKCMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLGMN--AKLLSDVIN 197 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~ 197 (286)
|+..+..+....++-...-.|++.|... ......+.|+..++++.|++ .+.+.+.+.
T Consensus 165 l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 244 (305)
T PRK12921 165 LAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVK 244 (305)
T ss_pred HHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 8887776666666777778888877543 23456789999999999976 344444333
Q ss_pred ccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 198 TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 198 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.-... ...+ .+.+.++.. .+... -++. =...+.++++++|+++|..+.+++++...
T Consensus 245 ~~~~~--~~~~---~sSm~~D~~-~gr~t---Eid~---i~G~vv~~a~~~gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 245 IFAGA--PGDM---KTSMLRDME-KGRPL---EIDH---LQGVLLRRARAHGIPTPILDTVYALLKAY 300 (305)
T ss_pred HHhcc--CCCC---CcHHHHHHH-cCCcc---cHHH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 21000 0000 001111110 11100 0111 12358999999999999999999998654
No 69
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.46 E-value=3.5e-12 Score=108.82 Aligned_cols=157 Identities=18% Similarity=0.318 Sum_probs=111.9
Q ss_pred HHHHHHhCC--CcEEEEcCCchHHHHHHHcCCcccCC-HHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 6 KLFFLQFQG--HDVIVYDKNTDASQTLAKEGANMALS-LSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 6 lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~s-~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
+|+.|.++| ++|++||++++..+...+.|+.-..+ ..+.++++|+||+|+| ...+.+++.. +.+.+++|.+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l~~---~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVLEE---IAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHHHH---HHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHHHH---hhhhcCCCcEEE
Confidence 578899999 68999999999988887888654332 2678999999999999 4678888875 888899999999
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe-ccCCCC----H----HhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----T----KAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~----~----~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~ 150 (286)
|.+++.-...+.+.+.+. .+..|+. .|++|. + ...-.|...+++-+ +.+.++.++.+++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888887777655 6778885 588887 2 22235666777744 357889999999999999998
Q ss_pred cCCcchHHHHHHHHHHH
Q psy764 151 CGDSGNGQVAKLCNNML 167 (286)
Q Consensus 151 ~g~~g~a~~~Kl~~n~~ 167 (286)
+.+-.+-..+-+++.+.
T Consensus 156 ~~~eeHD~~~A~vshlp 172 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLP 172 (258)
T ss_dssp --HHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 87655656665554443
No 70
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.45 E-value=4.2e-12 Score=108.66 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=118.2
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchH--HHHHHHcCCccc--CCH-HHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDA--SQTLAKEGANMA--LSL-STLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~--~~~l~~~g~~~~--~s~-~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||..+|+.|.++|+.|.+|+++... .+...+.|+.-. .+. .+.+..+|+||+|||- .++.+++.. +.+.+
T Consensus 13 liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l~~---l~~~l 88 (279)
T COG0287 13 LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVLKE---LAPHL 88 (279)
T ss_pred hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHHHH---hcccC
Confidence 48999999999999988777665544 444444555332 333 6777889999999995 578888875 77789
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCH--HhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCeE
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT--KAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIV 149 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~--~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v~ 149 (286)
++|.+|+|.+++.-...+.+.+...+.. +|+. .|++|++ .....+..++++-++ .+.++++..+++.+|.+++
T Consensus 89 ~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v 167 (279)
T COG0287 89 KKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLV 167 (279)
T ss_pred CCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999999998888887777665555 7886 5999984 344456656666553 4678899999999999999
Q ss_pred ecCCcchHHHHHHHH
Q psy764 150 HCGDSGNGQVAKLCN 164 (286)
Q Consensus 150 ~~g~~g~a~~~Kl~~ 164 (286)
++.+-.+-..+-.++
T Consensus 168 ~~~~eeHD~~~a~vs 182 (279)
T COG0287 168 EMDAEEHDRVMAAVS 182 (279)
T ss_pred EcChHHHhHHHHHHH
Confidence 988655555554443
No 71
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.44 E-value=5.4e-12 Score=109.54 Aligned_cols=183 Identities=18% Similarity=0.270 Sum_probs=122.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------------cCCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------------EGANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------------~g~~~~~s~~e~~~~adivi~~v 55 (286)
+||+.+|..|+++|++|++||+++++++++.+ .++..++++++++++||+||.|+
T Consensus 13 ~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieav 92 (287)
T PRK08293 13 VLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAV 92 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEec
Confidence 38999999999999999999999887655432 13446788999999999999999
Q ss_pred CChhHHH-HHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEe---cCC
Q psy764 56 PASQDVL-DAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV---GGD 130 (286)
Q Consensus 56 ~~~~~~~-~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~---gg~ 130 (286)
|.+.+++ .++.. +.+.++++.+|+ ++||..+.. +++.+ ++.-+|+..-.+..+. ...++.++ ..+
T Consensus 93 pe~~~~k~~~~~~---l~~~~~~~~ii~sntSt~~~~~---~~~~~-~~~~r~vg~Hf~~p~~---~~~lvevv~~~~t~ 162 (287)
T PRK08293 93 PEDPEIKGDFYEE---LAKVAPEKTIFATNSSTLLPSQ---FAEAT-GRPEKFLALHFANEIW---KNNTAEIMGHPGTD 162 (287)
T ss_pred cCCHHHHHHHHHH---HHhhCCCCCEEEECcccCCHHH---HHhhc-CCcccEEEEcCCCCCC---cCCeEEEeCCCCCC
Confidence 9765544 44543 666677788874 455554433 33332 2233455321122111 22334444 446
Q ss_pred HhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 131 KSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 131 ~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
+++++++.++++.+|+.++.+..-..+... |=+ ....++|++.+.+.--.+++++-.++..+.
T Consensus 163 ~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 163 PEVFDTVVAFAKAIGMVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 889999999999999988888632233333 322 234579999998876678999988876553
No 72
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.43 E-value=1.2e-11 Score=108.13 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=131.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c---------CCcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E---------GANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||..+|.+|+.+||+|++||++++..+.+.+ . .+..++++++++++||+||-|+|...+
T Consensus 17 ~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~ 96 (321)
T PRK07066 17 VIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREA 96 (321)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHH
Confidence 38999999999999999999999886554322 1 235677899999999999999999888
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHH
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKA 137 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~ 137 (286)
++..+.. .+.+.++++. ||.+||. +....++++.+. +.-+++-+=.+..|... .++=++.| +++.++++
T Consensus 97 vK~~lf~--~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~-~p~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~~~~ 168 (321)
T PRK07066 97 LKLELHE--RISRAAKPDA-IIASSTS-GLLPTDFYARAT-HPERCVVGHPFNPVYLL---PLVEVLGGERTAPEAVDAA 168 (321)
T ss_pred HHHHHHH--HHHHhCCCCe-EEEECCC-ccCHHHHHHhcC-CcccEEEEecCCccccC---ceEEEeCCCCCCHHHHHHH
Confidence 8887763 4666666666 6666665 444556666553 32344433222222211 23334444 58899999
Q ss_pred HHHHHHhcCCeEecC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 138 KPILKCMGRNIVHCG-DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 138 ~~ll~~~g~~v~~~g-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
..+++.+|+.++.+. +. -| .+.|-+. ...+.|++.+.++-..+++++-.++..+.+..|
T Consensus 169 ~~f~~~lGk~pV~v~kd~-pG----Fi~NRl~---~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 169 MGIYRALGMRPLHVRKEV-PG----FIADRLL---EALWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred HHHHHHcCCEeEecCCCC-cc----HHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 999999999888884 42 22 2234433 346799999988877899999999887766544
No 73
>PLN02712 arogenate dehydrogenase
Probab=99.42 E-value=8e-12 Score=119.30 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=110.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccc-cCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILK-HAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~g 78 (286)
+||..+|++|.+.|++|.+|||+... +...+.|+....++.+++. .+|+||+|+|. ..+.+++.. +.. .+++|
T Consensus 379 ~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~---l~~~~lk~g 453 (667)
T PLN02712 379 NFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS---LPFQRLKRS 453 (667)
T ss_pred HHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH---HHHhcCCCC
Confidence 38999999999999999999999654 4455668877788888876 58999999995 678888764 443 47789
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcC--ceE-----EEecCCHhhHHH---HHHHHHHhcCC
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEA--TLT-----FMVGGDKSSLEK---AKPILKCMGRN 147 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g--~l~-----~~~gg~~~~~~~---~~~ll~~~g~~ 147 (286)
++|+|++++.....+.+.+ +...+..|+ .+|++|.... ..| .+. .+++++.+..++ +..+++.+|.+
T Consensus 454 ~ivvDv~SvK~~~~~~~~~-~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~ 531 (667)
T PLN02712 454 TLFVDVLSVKEFPRNLFLQ-HLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCR 531 (667)
T ss_pred cEEEECCCccHHHHHHHHH-hccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCE
Confidence 9999999998444444443 344577788 7899997754 111 112 334566555444 45899999999
Q ss_pred eEecCCcchHHHH
Q psy764 148 IVHCGDSGNGQVA 160 (286)
Q Consensus 148 v~~~g~~g~a~~~ 160 (286)
++.+.+-..-..+
T Consensus 532 vv~ms~eeHD~~~ 544 (667)
T PLN02712 532 MVEMSCAEHDWHA 544 (667)
T ss_pred EEEeCHHHHHHHH
Confidence 9988864444333
No 74
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.39 E-value=2.9e-12 Score=103.64 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=88.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
+|.++|..|+++||+|++||.++++++.+++. +.+++.+..++++++|++|+|||+|.
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 79999999999999999999999998887652 24667788999999999999999774
Q ss_pred -------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHH-HHHhcC-----CceEeccCCCCHHhhh---cCce
Q psy764 60 -------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSN-LAREKQ-----ITFLDAPVSGGTKAAQ---EATL 123 (286)
Q Consensus 60 -------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~-~~~~~g-----~~~~~~pv~g~~~~a~---~g~l 123 (286)
.+++++.. +.+.++++++||..||+.|.+++++.. .+++.+ +.+..+|.+-.+..+. ...-
T Consensus 91 ~~~~Dls~v~~a~~~---i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~~~~ 167 (185)
T PF03721_consen 91 DGSPDLSYVESAIES---IAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFRNPP 167 (185)
T ss_dssp TTSBETHHHHHHHHH---HHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHHSSS
T ss_pred cCCccHHHHHHHHHH---HHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhccCCC
Confidence 25555553 788889999999999999999996554 444433 3556677554433332 2222
Q ss_pred EEEecCCHhhHH-HHHH
Q psy764 124 TFMVGGDKSSLE-KAKP 139 (286)
Q Consensus 124 ~~~~gg~~~~~~-~~~~ 139 (286)
.++.|.+++..+ ++++
T Consensus 168 rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 168 RVVGGCDDESAEERLKE 184 (185)
T ss_dssp EEEEEESSHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHhc
Confidence 566676654333 5544
No 75
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.37 E-value=1.2e-11 Score=120.75 Aligned_cols=172 Identities=15% Similarity=0.232 Sum_probs=126.2
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHcCCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKEGAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.++++.|.++| ++|++|||++++.+.+.+.|+. ...+..++++++|+||+|+|. +.+++++.. +.+.+++
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl~~---l~~~~~~ 89 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVLAD---LKPLLSE 89 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHHHH---HHHhcCC
Confidence 8999999999999 4899999999998887777764 455788889999999999995 688888874 7777788
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHh--------hhcCceEEEec---CCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKA--------AQEATLTFMVG---GDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~--------a~~g~l~~~~g---g~~~~~~~~~~ll~~~g 145 (286)
+.+|+|+++++....+.+.+.+....++|+ ..|++|++.. .-.+..++++. ++++.++.++++|+.+|
T Consensus 90 ~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 90 HAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred CcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 899999999998888887777655556766 5788866431 11233234443 46778899999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy764 146 RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 178 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 178 (286)
.+++++.+...-..+-+++... +.....+.|+
T Consensus 170 ~~~~~~~~~~hD~~~a~~~~~p-h~~~~~l~~~ 201 (735)
T PRK14806 170 ADVLHMDVAHHDEVLAATSHLP-HLLAFSLVDQ 201 (735)
T ss_pred CEEEEcCHHHHhHHHHHhcchH-HHHHHHHHHH
Confidence 9888887644444444333332 2233344555
No 76
>PLN02256 arogenate dehydrogenase
Probab=99.36 E-value=3.2e-11 Score=104.98 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=114.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccc-cccCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGI-LKHAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~~g 78 (286)
+||.++++.|.+.|++|++||+++.. +...+.|+....+..+++ .++|+||+|+|. .++.+++.. + .+.++++
T Consensus 46 ~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~---l~~~~l~~~ 120 (304)
T PLN02256 46 NFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS---LPLQRLKRS 120 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh---hhhhccCCC
Confidence 38999999999999999999999743 444456887778888886 479999999995 678888875 5 4567889
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHh--hhcCceEEEec-------CCHhhHHHHHHHHHHhcCCe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA--AQEATLTFMVG-------GDKSSLEKAKPILKCMGRNI 148 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~g-------g~~~~~~~~~~ll~~~g~~v 148 (286)
++|+|.++++......+.+.+. .+..|+. +|++|.... ...+.-.++.. .+++.++.++++++.+|.++
T Consensus 121 ~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v 199 (304)
T PLN02256 121 TLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRM 199 (304)
T ss_pred CEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEE
Confidence 9999999987666666665543 3556774 688887643 22233222222 25678889999999999999
Q ss_pred EecCCcchHHHHHH
Q psy764 149 VHCGDSGNGQVAKL 162 (286)
Q Consensus 149 ~~~g~~g~a~~~Kl 162 (286)
+.+.+...-..+-.
T Consensus 200 ~~~~~eeHD~~vA~ 213 (304)
T PLN02256 200 VEMSCEEHDRYAAG 213 (304)
T ss_pred EEeCHHHHhHHHHh
Confidence 99886555555443
No 77
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.36 E-value=1.5e-11 Score=102.47 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=103.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------CCc---ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------GAN---MALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||++++..|+++||+|.+|+|++++.+.+... |.. ...+..++++++|+||+|+|. +++++++..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~~~~~~l~~--- 87 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-DHVLKTLES--- 87 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-HHHHHHHHH---
Confidence 78999999999999999999999988776542 221 224677889999999999995 677888764
Q ss_pred ccccCCCCCEEEEcCCCCch---------------HHHHHHHHHHhcCCceEec-cCCCCHH----hhhcCceEEEecCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQ---------------VPQTLSNLAREKQITFLDA-PVSGGTK----AAQEATLTFMVGGD 130 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~---------------~~~~~~~~~~~~g~~~~~~-pv~g~~~----~a~~g~l~~~~gg~ 130 (286)
+.+.+ ++++|||++...+. .++.+++.+.. +.+++-+ |...... ....+.-.+++|-|
T Consensus 88 l~~~l-~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd 165 (219)
T TIGR01915 88 LRDEL-SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDD 165 (219)
T ss_pred HHHhc-cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCCCCCCEEEECCC
Confidence 54444 45899999765442 12344444422 1334433 3222111 11123334555556
Q ss_pred HhhHHHHHHHHHHh-cCCeEecCCcchHHHHH
Q psy764 131 KSSLEKAKPILKCM-GRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 131 ~~~~~~~~~ll~~~-g~~v~~~g~~g~a~~~K 161 (286)
+++.+.+..|.+.+ |..++.+|+...+-.+-
T Consensus 166 ~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 166 EEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 77888999999999 99999999865555443
No 78
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.34 E-value=8.4e-11 Score=102.88 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=145.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----------cCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----------ALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+.+|..|.++||+|++|+|++++.+.+.+.|... .+++.++ +.+|+||+|+|. .++++++..
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~~~~~~~~--- 85 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQLPAALPS--- 85 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-ccHHHHHHH---
Confidence 799999999999999999999988888887767532 4556665 899999999996 577888875
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC----ceEeccCC--CCHHhhhcCceEEEecC-C--HhhHHHHHHHH
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI----TFLDAPVS--GGTKAAQEATLTFMVGG-D--KSSLEKAKPIL 141 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~----~~~~~pv~--g~~~~a~~g~l~~~~gg-~--~~~~~~~~~ll 141 (286)
+.+.+.++++||.+.+.. ...+.+.+.+....+ .+..+-.. +.......+. +.+|. + .+..+.+.++|
T Consensus 86 l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~l~~~l 162 (304)
T PRK06522 86 LAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEALADLL 162 (304)
T ss_pred HhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHHHHHHH
Confidence 777777777787766543 222334443332211 11111111 1111122233 33333 2 23356677788
Q ss_pred HHhcCCeEecCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHc
Q psy764 142 KCMGRNIVHCGDSGNGQVAKLCNNML---------------------LGVTMMGVAEAMNLGVKLGMN--AKLLSDVINT 198 (286)
Q Consensus 142 ~~~g~~v~~~g~~g~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~ 198 (286)
+..+.++....++-...-.|++.|.. .......+.|+..++++.|++ .+.+.+.+..
T Consensus 163 ~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~ 242 (304)
T PRK06522 163 NAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVRQ 242 (304)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 87776655544555666666655532 234456789999999999875 3444444332
Q ss_pred cCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 199 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
..... ..+ .+.+.++.. .+... -++. -..++.++++++|+++|..+.+++.++...
T Consensus 243 ~~~~~--~~~---~sSm~~D~~-~gr~t---Eid~---i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~ 298 (304)
T PRK06522 243 VIQKT--AAN---TSSMLQDLE-AGRPT---EIDA---IVGYVLRRGRKHGIPTPLNDALYGLLKAKE 298 (304)
T ss_pred Hhhcc--CCC---CchHHHHHH-cCCCc---ccch---hccHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 11000 000 011111110 11000 0111 123488999999999999999999886553
No 79
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.31 E-value=1.4e-10 Score=100.49 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=116.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-----------HHHHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-----------TLAKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+++|++|++||+++++.+ .+.+.| ++.+++.+ .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 899999999999999999999998874 333334 23456665 47899999999987
Q ss_pred hhHHH-HHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEE--ecCCHhh
Q psy764 58 SQDVL-DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFM--VGGDKSS 133 (286)
Q Consensus 58 ~~~~~-~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~--~gg~~~~ 133 (286)
+..++ +++.. +.+.++++++|+ ++|.+.... ++++.+.. .-+++. +|....+. ..+. -+. .+.+++.
T Consensus 93 ~~~~k~~~~~~---l~~~~~~~~il~-s~ts~~~~~-~la~~~~~-~~r~ig~h~~~P~~~--~~~v-ev~~g~~t~~e~ 163 (282)
T PRK05808 93 NMDLKKKIFAQ---LDEIAKPEAILA-TNTSSLSIT-ELAAATKR-PDKVIGMHFFNPVPV--MKLV-EIIRGLATSDAT 163 (282)
T ss_pred cHHHHHHHHHH---HHhhCCCCcEEE-ECCCCCCHH-HHHHhhCC-CcceEEeeccCCccc--CccE-EEeCCCCCCHHH
Confidence 66665 55553 666777787773 333333333 55555532 223332 12221111 1111 222 3457899
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
++.+.++++.+|+.++++++. .+. +.|-+. ...++|+..+.++--.+++++-.++..+
T Consensus 164 ~~~~~~l~~~lGk~pv~~~d~-~g~----i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 164 HEAVEALAKKIGKTPVEVKNA-PGF----VVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHHcCCeeEEecCc-cCh----HHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999999999999999752 222 234333 3456899888876546788887776544
No 80
>KOG2666|consensus
Probab=99.30 E-value=2.5e-10 Score=96.35 Aligned_cols=218 Identities=15% Similarity=0.182 Sum_probs=152.3
Q ss_pred CcEEEEcCCchHHHHHHHc-------------------CCcccCCHHHHhhcCcEEEEecCChhHHHH-----------H
Q psy764 15 HDVIVYDKNTDASQTLAKE-------------------GANMALSLSTLASGAEFIISMLPASQDVLD-----------A 64 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~-----------v 64 (286)
.+|++.|.+..++..+... +..+..+.+.+++++|+||++|.+|.-... +
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3788889988877665442 245667889999999999999988753211 1
Q ss_pred hcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh--cCCceEeccCCCCHHhhhcCce--------EEEecCCH---
Q psy764 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE--KQITFLDAPVSGGTKAAQEATL--------TFMVGGDK--- 131 (286)
Q Consensus 65 ~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l--------~~~~gg~~--- 131 (286)
-....-+.+.....++|++.||+....++.+...+.. .|+.| .+...|....+|+. .+++||++
T Consensus 107 es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~f---qilsnpeflaegtaikdl~npdrvligg~etpe 183 (481)
T KOG2666|consen 107 ESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKF---QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPE 183 (481)
T ss_pred HHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCcee---EeccChHHhcccchhhhhcCCceEEECCCCChh
Confidence 1111124444567799999999999999988887742 24433 23334444433332 68888863
Q ss_pred --hhHHHHHHHHHHhcC-CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccc
Q psy764 132 --SSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEV 208 (286)
Q Consensus 132 --~~~~~~~~ll~~~g~-~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~ 208 (286)
.+++....+++.+-. .-+.+-..-+++.-|++.|.+++--+..++-+.++|++.|.|..++.-+++..+ ..
T Consensus 184 g~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~---ri--- 257 (481)
T KOG2666|consen 184 GFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS---RI--- 257 (481)
T ss_pred HHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc---cc---
Confidence 345555666666633 233444568999999999999999999999999999999999998888776431 11
Q ss_pred cCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCC
Q psy764 209 YNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251 (286)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~ 251 (286)
+++++ + -+-||..+++.||+-.+.-+++.+|+|
T Consensus 258 ---g~kfl-----~--asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 258 ---GSKFL-----N--ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred ---cHHHh-----h--cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 11121 1 135888999999999999999999976
No 81
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.29 E-value=1e-11 Score=98.05 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=92.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|+++|..|+++||+|++|.|+++.++.+.+.+ +.++++++++++++|+||+++|. +..++++..
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-~~~~~~~~~ 88 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-QAHREVLEQ 88 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-GGHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-HHHHHHHHH
Confidence 699999999999999999999999998887642 45678899999999999999995 688999986
Q ss_pred CccccccCCCCCEEEEcCCCC-chH----HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHh
Q psy764 68 SDGILKHAKPGVIVIDSSTVD-PQV----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~-p~~----~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~ 132 (286)
+.+++++++++|.++... +.+ .+.+.+.+....+.++.+|.+.........+..++++-+.+
T Consensus 89 ---l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 89 ---LAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ---HTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ---HhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 888899999999988654 322 23334444444467888888887777777887777776655
No 82
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.27 E-value=2.7e-10 Score=99.40 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=117.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-HHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-TLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|++|.+.|++|.+++|+.++.. ...+.|+... ++.+++++||+|++++|+. ....++.. .+.+.+++|++
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~--~I~~~Lk~g~i 103 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEE--EIEPNLKEGAA 103 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHH--HHHhcCCCCCE
Confidence 899999999999999999988755443 3345577655 8999999999999999965 45888731 47888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHh-----hhcCceEEE-ecCC--HhhHHHHHHHHHHhcCCeE--
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKA-----AQEATLTFM-VGGD--KSSLEKAKPILKCMGRNIV-- 149 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~-----a~~g~l~~~-~gg~--~~~~~~~~~ll~~~g~~v~-- 149 (286)
|+.++.......+ .....++.++ -+|...+..- ...|...++ +..| .++.+.+..+++.+|....
T Consensus 104 L~~a~G~~i~~~~----~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~ 179 (330)
T PRK05479 104 LAFAHGFNIHFGQ----IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGV 179 (330)
T ss_pred EEECCCCChhhce----eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccce
Confidence 9776664443322 1122344443 3565554421 334554555 5666 7889999999999997643
Q ss_pred ---ecCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy764 150 ---HCGD------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192 (286)
Q Consensus 150 ---~~g~------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~ 192 (286)
.+.+ .|. ++ .+..+....+..++.....+|.+|+..
T Consensus 180 ~~ttf~~e~~~dl~ge-q~------vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 180 IETTFKEETETDLFGE-QA------VLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred eeeeecccccccchhh-HH------HHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1111 122 11 223344455666677789999998764
No 83
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.26 E-value=7.1e-11 Score=95.23 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=99.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCc-hHHHHHHHc-CCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNT-DASQTLAKE-GAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~-g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+||+++|++|+++||+|.+-+|+. ++.+...+. +.. ...++.++++.+||||++||. ..+.+++.+ +...+ .
T Consensus 11 niG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~~~---l~~~~-~ 85 (211)
T COG2085 11 NIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVLAE---LRDAL-G 85 (211)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHHHH---HHHHh-C
Confidence 489999999999999999996654 444444332 433 345789999999999999996 577777764 55544 4
Q ss_pred CCEEEEcCCCC---------------chHHHHHHHHHHhcCCceEec------cCCCCHHhhhcCceEEEecCCHhhHHH
Q psy764 78 GVIVIDSSTVD---------------PQVPQTLSNLAREKQITFLDA------PVSGGTKAAQEATLTFMVGGDKSSLEK 136 (286)
Q Consensus 78 g~ivid~st~~---------------p~~~~~~~~~~~~~g~~~~~~------pv~g~~~~a~~g~l~~~~gg~~~~~~~ 136 (286)
|++|||++... -..++.+++.+... +++.+ -............-++++|-|.++.+.
T Consensus 86 ~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~ 163 (211)
T COG2085 86 GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAV 163 (211)
T ss_pred CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc--chhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHH
Confidence 89999998741 11223333333221 22221 111111111122334555556779999
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
+.+|.+.+|.....+|+...+..+-
T Consensus 164 v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 164 VAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred HHHHHHhcCcceeeccccccccccc
Confidence 9999999999999999865555543
No 84
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.23 E-value=3.9e-10 Score=100.24 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=108.8
Q ss_pred CccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc---CC
Q psy764 1 MISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH---AK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~---l~ 76 (286)
+||+.+|+.|.+. |++|++||++.+ ...++.+.+++||+||+|+|- ..+.+++.. +.+. ++
T Consensus 15 liGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~---l~~~~~~l~ 79 (370)
T PRK08818 15 AYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIEE---YVALAGGRA 79 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHH---HhhhhcCCC
Confidence 4899999999864 889999998521 234678889999999999994 677887765 5543 78
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHH-hhhcCceEEEecCC-HhhHHHHHHHHHHhcCCeEecCC
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK-AAQEATLTFMVGGD-KSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~-~a~~g~l~~~~gg~-~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
++++|+|.++++....+.+ .+.+..|+. .|++|++. ....+...+++.+. .+..+.++.+++.+|.+++.+.+
T Consensus 80 ~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~a 155 (370)
T PRK08818 80 AGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATP 155 (370)
T ss_pred CCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCH
Confidence 9999999999986655544 234567885 69999853 33456656666554 44467889999999999999987
Q ss_pred cchHHHHHHHH
Q psy764 154 SGNGQVAKLCN 164 (286)
Q Consensus 154 ~g~a~~~Kl~~ 164 (286)
..+-..+-.++
T Consensus 156 eeHD~~~A~vS 166 (370)
T PRK08818 156 EHHDRVMALVQ 166 (370)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 85
>PLN02712 arogenate dehydrogenase
Probab=99.21 E-value=4.2e-10 Score=107.58 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=111.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCcccc-ccCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGIL-KHAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~-~~l~~g 78 (286)
+||..+|+.|.++|++|.+|||+..+ +...+.|+..+.++.+++ +++|+||+|+| +.++.+++.. +. +.++++
T Consensus 62 ~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl~~---l~~~~l~~g 136 (667)
T PLN02712 62 NYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVLKS---LPLQRLKRN 136 (667)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHHHh---hhhhcCCCC
Confidence 38999999999999999999998554 445566888888888866 56999999999 4688888875 53 567889
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHh--hhcCceEEEec---CC-H---hhHHHHHHHHHHhcCCe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA--AQEATLTFMVG---GD-K---SSLEKAKPILKCMGRNI 148 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~g---g~-~---~~~~~~~~ll~~~g~~v 148 (286)
++|+|++++.....+.+.+.+ ..+..|+. .|++|.... ...+...++.+ ++ . +.++.++++++.+|.++
T Consensus 137 ~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 137 TLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKM 215 (667)
T ss_pred eEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEE
Confidence 999999998876666555554 33566774 699987632 12222234442 33 2 23556679999999999
Q ss_pred EecCCcchHHHHH
Q psy764 149 VHCGDSGNGQVAK 161 (286)
Q Consensus 149 ~~~g~~g~a~~~K 161 (286)
+.+.+...-.++-
T Consensus 216 ~~ms~eeHD~~~A 228 (667)
T PLN02712 216 VEMSCTEHDKYAA 228 (667)
T ss_pred EEeCHHHHHHHHH
Confidence 9887644444443
No 86
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.18 E-value=3.5e-09 Score=92.09 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=139.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--------------cCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--------------ALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|..|.++||+|++|+|+ +..+.+.+.|..+ .+++.+ ....|+||+|++.. ++++++..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~ 78 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAAL 78 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHHH
Confidence 8999999999999999999997 6677777655321 223344 56899999999975 67888774
Q ss_pred CccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC----CceEeccCCC-C-HHhhhcCceEEEecCC---HhhHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ----ITFLDAPVSG-G-TKAAQEATLTFMVGGD---KSSLEKAK 138 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g----~~~~~~pv~g-~-~~~a~~g~l~~~~gg~---~~~~~~~~ 138 (286)
+.+.+.++++||.+.+.... .+.+.+.+.+.. +.+..+-..+ + ......+. +.+|.. .+..+.+.
T Consensus 79 ---l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~~~~~~~~l~ 152 (293)
T TIGR00745 79 ---LLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVGENEAVEALA 152 (293)
T ss_pred ---hHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCCchHHHHHHH
Confidence 77777788888876554322 234444443221 1111111111 0 00111222 334432 23455667
Q ss_pred HHHHHhcCCeEecCCcchHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Q psy764 139 PILKCMGRNIVHCGDSGNGQVAKLCNNM---------------------LLGVTMMGVAEAMNLGVKLGMN--AKLLSDV 195 (286)
Q Consensus 139 ~ll~~~g~~v~~~g~~g~a~~~Kl~~n~---------------------~~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~ 195 (286)
++|+..+.++....++-...-.|++.|. ....+...+.|+..++++.|++ .+.+.+.
T Consensus 153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~ 232 (293)
T TIGR00745 153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEEL 232 (293)
T ss_pred HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 7777767666555566556666665554 2234456789999999999975 3434444
Q ss_pred HHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 196 INTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 196 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+........ .+ .+.++.+ +..+-.+ +..-=...+.+.++++|+++|..+.+++.++..
T Consensus 233 ~~~~~~~~~--~~---~sSm~~D------~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 233 VRAVIRMTA--EN---TSSMLQD------LLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHHHhcCC--CC---CChHHHH------HHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 432100000 00 0111111 1000001 111122358899999999999999998887643
No 87
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.14 E-value=7.1e-11 Score=85.25 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=67.5
Q ss_pred ccHHHHHHHHhCC---CcEEEE-cCCchHHHHHHHc-CCcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG---HDVIVY-DKNTDASQTLAKE-GANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++|++.|.++| ++|.++ +|++++.+++.+. +..... +..|+++++|+||+||| |+++.+++.. + +..
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~~~---i-~~~ 84 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVLSE---I-PHL 84 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHHHH---H-HHH
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHHHH---H-hhc
Confidence 8999999999999 899955 9999999998655 666666 89999999999999999 6789999875 5 667
Q ss_pred CCCCEEEEcCC
Q psy764 76 KPGVIVIDSST 86 (286)
Q Consensus 76 ~~g~ivid~st 86 (286)
.+++++|+++.
T Consensus 85 ~~~~~vis~~a 95 (96)
T PF03807_consen 85 LKGKLVISIAA 95 (96)
T ss_dssp HTTSEEEEEST
T ss_pred cCCCEEEEeCC
Confidence 89999998764
No 88
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.11 E-value=3.4e-09 Score=92.56 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=114.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||.++|++|.++|++|+++++ ++++.+.+.+.|+... ++.+++++||+|++++|+..+...+..+ +.+.++++.
T Consensus 13 ~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~e---i~~~l~~g~ 88 (314)
T TIGR00465 13 SQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAE---IQPLLKEGK 88 (314)
T ss_pred HHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHH---HHhhCCCCc
Confidence 3899999999999999887654 4456666667788754 5889999999999999965366665543 667777776
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCC-ceEeccCCCCHH-----hhhcCceEEE-ecC--CHhhHHHHHHHHHHhcCC---
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQI-TFLDAPVSGGTK-----AAQEATLTFM-VGG--DKSSLEKAKPILKCMGRN--- 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~-~~~~~pv~g~~~-----~a~~g~l~~~-~gg--~~~~~~~~~~ll~~~g~~--- 147 (286)
+|.-+...+... +...+. .+. .+.-+|...+.. ....|...++ ++. +.+..+.+..+|+.+|..
T Consensus 89 iVs~aaG~~i~~---~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~~ 164 (314)
T TIGR00465 89 TLGFSHGFNIHF---VQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAG 164 (314)
T ss_pred EEEEeCCccHhh---ccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 444444433322 222332 233 344667665542 0145553443 333 467788999999999986
Q ss_pred ----eE--ecCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 148 ----IV--HCGD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 148 ----v~--~~g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.| .+.+ .+...++--+...+++ .+.|++ .++|++++..+......
T Consensus 165 ~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~----~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 165 VLETTFKEETESDLFGEQAVLCGGLTALIK----AGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred eeechhHhhhhHHhcCcchhHHhHHHHHHH----HHHHHH---HHcCCCHHHHHHHHHHH
Confidence 32 2221 2333333222222233 233664 79999999988876554
No 89
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.07 E-value=1.1e-08 Score=89.84 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=138.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-------------CCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-------------LSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------------~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+|..|.++||+|++|.|++. +.+.+.|.... .+..+....+|+||+|+|.. ++.+++..
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~~~~~~~- 91 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-ANALLAPL- 91 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-ChHhHHHH-
Confidence 799999999999999999999863 44545443211 11223456899999999975 56776664
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCC--HHhhhcCceEE-EecCC------HhhHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGG--TKAAQEATLTF-MVGGD------KSSLE 135 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~--~~~a~~g~l~~-~~gg~------~~~~~ 135 (286)
+.+.+.++.+|+..-.... ..+.+.+.+.+. ++.++.+...+. ......|.+.+ ...++ .+..+
T Consensus 92 --l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~ 168 (313)
T PRK06249 92 --IPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVE 168 (313)
T ss_pred --HhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHH
Confidence 5566667777776654432 233444444332 222333222221 01112234222 11232 35556
Q ss_pred HHHHHHHHhcCCeEecCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC--HHHH
Q psy764 136 KAKPILKCMGRNIVHCGDSGNGQVAKLCNNML---------------------LGVTMMGVAEAMNLGVKLGMN--AKLL 192 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gl~--~~~~ 192 (286)
.+..+|+..+.++....++-...-.|++.|.. .......+.|+..++++.|++ .+.+
T Consensus 169 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~ 248 (313)
T PRK06249 169 EGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYA 248 (313)
T ss_pred HHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHH
Confidence 77788888887766666666666667665532 234456689999999999986 2222
Q ss_pred HHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 193 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
..++......+ .+ .+.++++ +..+-.+ +.--=...+.++++++|+++|..+.+++.++...
T Consensus 249 ~~~~~~~~~~~---~~---~sSM~qD------~~~gr~t-Eid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~~~e 309 (313)
T PRK06249 249 DHMLAVTERMP---DY---RPSMYHD------FEEGRPL-ELEAIYANPLAAARAAGCAMPRVEMLYQALEFLD 309 (313)
T ss_pred HHHHHHhhcCC---CC---CChHHHH------HHCCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 22222110000 00 0112211 1111111 1111234589999999999999999998877553
No 90
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.07 E-value=2.9e-10 Score=85.69 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=66.7
Q ss_pred CccHHHHHHHHhCCCcEEE-EcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc--CC
Q psy764 1 MISTLKLFFLQFQGHDVIV-YDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH--AK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~--l~ 76 (286)
.+|++|++.|.++||+|.. |+|+++..+++... +.....++.|+++++|++|++|||+ ++.++..+ +... .+
T Consensus 20 rVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~---La~~~~~~ 95 (127)
T PF10727_consen 20 RVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ---LAQYGAWR 95 (127)
T ss_dssp CCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH---HHCC--S-
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHH---HHHhccCC
Confidence 3799999999999999875 58998888777654 5556667889999999999999985 88888875 6655 77
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+|++|++||...+....+- +.++|....
T Consensus 96 ~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~ 123 (127)
T PF10727_consen 96 PGQIVVHTSGALGSDVLAP---ARERGAIVA 123 (127)
T ss_dssp TT-EEEES-SS--GGGGHH---HHHTT-EEE
T ss_pred CCcEEEECCCCChHHhhhh---HHHCCCeEE
Confidence 9999999998877766544 445665443
No 91
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.00 E-value=8.8e-10 Score=86.69 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=78.1
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CC----cccCCHHHHhhcCcEEEEecCChhH-HHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GA----NMALSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~~ 74 (286)
||.++++.|.+.| ++|.+|||++++.+.+.+. +. ....+..++++++|+||+|+|.+.. ++.+... ...
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~----~~~ 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLP----PSL 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCC----HHH
Confidence 7889999999986 7899999999988877554 32 2455777888999999999998654 3343332 123
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++++++|+|+..+.+ .+.+.+.+.|+.+++
T Consensus 106 ~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 106 LKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred cCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 67899999999986654 788888889998886
No 92
>KOG3124|consensus
Probab=98.93 E-value=4.7e-08 Score=80.75 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=155.4
Q ss_pred cHHHHHHHHhCCC----cEEEEcCCchHH-HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGH----DVIVYDKNTDAS-QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~----~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
-.++++.+.+.|. ++..+-.+.... ..+...|...+.+..+.++.+|++|++++ |+.+..++.+ +......
T Consensus 12 a~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vls~---~~~~~~~ 87 (267)
T KOG3124|consen 12 AQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVLSE---IKPKVSK 87 (267)
T ss_pred HHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHhhc---Ccccccc
Confidence 3466777777774 466665532222 33667798888888999999999999999 6899999986 5555678
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCeE-----
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIV----- 149 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v~----- 149 (286)
+++|+.+--...-. .+.+.+. ...+++.. +...|....+|. .++.-|. .+..+.++++++..|....
T Consensus 88 ~~iivS~aaG~tl~--~l~~~l~-~~~rviRv-mpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~ 162 (267)
T KOG3124|consen 88 GKIIVSVAAGKTLS--SLESKLS-PPTRVIRV-MPNTPSVVGEGA-SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKC 162 (267)
T ss_pred ceEEEEEeecccHH--HHHHhcC-CCCceEEe-cCCChhhhhcCc-EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHh
Confidence 89999765443332 2233332 12233321 225566666776 4455442 4566889999999997431
Q ss_pred ---ecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCC
Q psy764 150 ---HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNY 225 (286)
Q Consensus 150 ---~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ 225 (286)
++|-.|++.++ .+.++.++++. +.++|++++..+++..++- |...+...-..-|..+ .+...
T Consensus 163 iDavTgLsGSgPAy-------~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~L----kd~V~ 228 (267)
T KOG3124|consen 163 IDAVTGLSGSGPAY-------VFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQL----KDDVC 228 (267)
T ss_pred hhHHhhccCCcHHH-------HHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHH----hCCCC
Confidence 33445666665 77778888888 8999999999999877752 2223222222223333 24455
Q ss_pred CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 226 NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 226 ~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+|+.+.-. .....++-|++.-++.++.+--.++.+.|
T Consensus 229 SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 229 SPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred CCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 77765554 55667888999999999999888887654
No 93
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=98.93 E-value=2.4e-08 Score=71.52 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
..|+.+|++.|.+.+..++.++|...+|++.|+|..++.+.++...-.+ .....| .++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 3689999999999999999999999999999999999999998642111 000111 235777899
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
.||...+...+++.|.+.++++++.+...
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
No 94
>PRK07574 formate dehydrogenase; Provisional
Probab=98.87 E-value=1.5e-08 Score=90.74 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=86.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|.+|.+|||+....+.....|+....+++|+++.||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 280 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--DVLSRMKRGSYL 280 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH--HHHhcCCCCcEE
Confidence 799999999999999999999874434334557776789999999999999999999999999853 577889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 281 IN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 281 VNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred EECCCCchhhHHHHHHHHHhCCcc
Confidence 999999999999999988876543
No 95
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.87 E-value=3.7e-07 Score=75.29 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=127.1
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|..||-.++++||+|...+.|.+ ..++..+.|++++++-.++++.+++.++..|-.+..-.+... |+++++.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iare---i~~hvpE 109 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIARE---ILEHVPE 109 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHH---HHhhCcC
Confidence 78899999999999999976643 356677789999999999999999999999987666666654 8888999
Q ss_pred CCEEEEcCCCCchHHHH-HHHHHHhc----CC-ceEeccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVPQT-LSNLAREK----QI-TFLDAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~~~-~~~~~~~~----g~-~~~~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
|.+|.+++|++|...-+ +...++-+ |+ .+.++.+-|+|.+ +- .++.|- .++.++++.++.++
T Consensus 110 gAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~r~velaes 185 (340)
T COG4007 110 GAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIERCVELAES 185 (340)
T ss_pred CcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHHHHHHHHHh
Confidence 99999999999876543 33333222 33 2334445555432 22 333321 36778999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLL 192 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~ 192 (286)
.|+.++.+- ..--+++-=....+....++++.+-+..+. -.|.+.+.+
T Consensus 186 ~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMI 234 (340)
T COG4007 186 TGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMI 234 (340)
T ss_pred cCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999877664 333333333445556666777777777666 356665443
No 96
>PLN03139 formate dehydrogenase; Provisional
Probab=98.82 E-value=2.8e-08 Score=88.95 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=87.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|.+|.+|||+....+.....|+...+++++++.+||+|++++|...+.+.++.. .+++.+++|.++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhhCCCCeEE
Confidence 799999999999999999999865444445567777789999999999999999999999999853 578889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCce
Confidence 999999998888998888766443
No 97
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.81 E-value=2.3e-07 Score=81.30 Aligned_cols=248 Identities=14% Similarity=0.047 Sum_probs=139.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccC-----------CHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMAL-----------SLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~-----------s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||+.+|..|.++|++|++++|+++..+.+.+. |....+ ...+.....|+||+|++.. ++.+++..
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-~~~~al~~-- 89 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-DAEPAVAS-- 89 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-hHHHHHHH--
Confidence 79999999999999999999998888877654 432210 1111234689999999974 67777764
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC-----CHHhhh-cCceEEEecC-CHhhHHHHHHHHH
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG-----GTKAAQ-EATLTFMVGG-DKSSLEKAKPILK 142 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g-----~~~~a~-~g~l~~~~gg-~~~~~~~~~~ll~ 142 (286)
+.+.+.+++.|+-+-+.... .+.+.+.+... .++.+-+.- +|.... .+.-.+.+|. +.+..+++.++|+
T Consensus 90 -l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~--~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~~~l~~~l~ 165 (305)
T PRK05708 90 -LAHRLAPGAELLLLQNGLGS-QDAVAARVPHA--RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTAPAWLDDLR 165 (305)
T ss_pred -HHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCC--cEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcchHHHHHHHH
Confidence 77778888877766444322 12333333322 222221111 111111 1111233442 2334466667777
Q ss_pred HhcCCeEecCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHHHc---c
Q psy764 143 CMGRNIVHCGDSGNGQVAKLCNNMLLG------------------VTMMGVAEAMNLGVKLGMN--AKLLSDVINT---S 199 (286)
Q Consensus 143 ~~g~~v~~~g~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~---~ 199 (286)
.-+.++.+..++-...-.|++.|.... .+...+.|+..++++.|++ .+.+.+.+.. .
T Consensus 166 ~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~~~~~~~~ 245 (305)
T PRK05708 166 EAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEEVQRVIQA 245 (305)
T ss_pred hcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHh
Confidence 766655555556555666766655321 2456688999999999975 2323332221 1
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH-HcCCC
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM-DKGCQ 271 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~-~~g~g 271 (286)
+.... +.|.++....+.. -++. =...+.++++++|++.|..+.+++..+... +.|+.
T Consensus 246 ~~~~~--------sSM~qD~~~gR~t----Eid~---i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~~ 303 (305)
T PRK05708 246 TAANY--------SSMYQDVRAGRRT----EISY---LLGYACRAADRHGLPLPRLQHLQQRLVAHLRARGLP 303 (305)
T ss_pred ccCCC--------cHHHHHHHcCCce----eehh---hhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCCC
Confidence 11000 1111111101100 0111 123588999999999999999998776554 45554
No 98
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.80 E-value=1.3e-07 Score=82.50 Aligned_cols=246 Identities=17% Similarity=0.157 Sum_probs=147.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc------------CCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA------------LSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~------------~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||+-++..|.++|++|+++.|++. .+++.+.|..+. ....+....+|+||++++. .++++++..
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q~~~al~~-- 86 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQLEEALPS-- 86 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-ccHHHHHHH--
Confidence 799999999999999999999876 778877663222 2223445589999999997 578888875
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCC-----H---HhhhcCce--EEEecCCHhhHHHHHH
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG-----T---KAAQEATL--TFMVGGDKSSLEKAKP 139 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~-----~---~~a~~g~l--~~~~gg~~~~~~~~~~ 139 (286)
+.+.+.+.+.|+-.-+.....- .+.+...+. .++.+-++.+ + .....|.. ..+.|++++.++.+.+
T Consensus 87 -l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~--~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~ 162 (307)
T COG1893 87 -LAPLLGPNTVVLFLQNGLGHEE-ELRKILPKE--TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAE 162 (307)
T ss_pred -hhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcc--eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHH
Confidence 7888888877775544433322 455544443 1222111111 1 11111221 1223345567888888
Q ss_pred HHHHhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q psy764 140 ILKCMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLG--MNAKLLSDVI 196 (286)
Q Consensus 140 ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G--l~~~~~~~~~ 196 (286)
+|+.-+.++.+..++-...-.|++.|.-+ ..+...+.|....+.+.| ++.+.+.++.
T Consensus 163 ~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~ 242 (307)
T COG1893 163 LFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVERVL 242 (307)
T ss_pred HHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 88888877766656656666665555433 345567889999999999 5664344443
Q ss_pred HccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 197 NTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 197 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
......+ ..++ +.|.++.. .+-.+ +.--=...+.+.++++|++.|..+.++++.+....
T Consensus 243 ~~~~~~~--~~~~---sSM~qDl~------~gr~t-Eid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 243 AVIRATD--AENY---SSMLQDLE------KGRPT-EIDAINGAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred HHHHhcc--cccC---chHHHHHH------cCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 3221100 0011 11111110 00000 00011235889999999999999999999886654
No 99
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.74 E-value=3.2e-08 Score=79.81 Aligned_cols=143 Identities=13% Similarity=0.241 Sum_probs=86.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|..++.+|++|.+||++++..+...+ . .+....++++++ +||+||=|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999886533221 1 256778899888 99999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC--CHhhHH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLE 135 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~ 135 (286)
.-.++.-+.. .+.+..+++.++...|+..+. .++++.+. +.-+++..-.+..+.. ....=++.+. +++.++
T Consensus 89 ~l~~K~~~~~--~l~~~~~~~~ilasnTSsl~i--~~la~~~~-~p~R~ig~Hf~~P~~~--~~lVEvv~~~~T~~~~~~ 161 (180)
T PF02737_consen 89 DLELKQELFA--ELDEICPPDTILASNTSSLSI--SELAAALS-RPERFIGMHFFNPPHL--MPLVEVVPGPKTSPETVD 161 (180)
T ss_dssp SHHHHHHHHH--HHHCCS-TTSEEEE--SSS-H--HHHHTTSS-TGGGEEEEEE-SSTTT----EEEEEE-TTS-HHHHH
T ss_pred cHHHHHHHHH--HHHHHhCCCceEEecCCCCCH--HHHHhccC-cCceEEEEeccccccc--CceEEEeCCCCCCHHHHH
Confidence 7777654432 255566777777654333332 34444432 2223443322222211 1111233333 588999
Q ss_pred HHHHHHHHhcCCeEecC
Q psy764 136 KAKPILKCMGRNIVHCG 152 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g 152 (286)
++..+++.+|+.++.+.
T Consensus 162 ~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 162 RVRALLRSLGKTPVVVK 178 (180)
T ss_dssp HHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHCCCEEEEec
Confidence 99999999999887764
No 100
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.72 E-value=4.7e-08 Score=85.08 Aligned_cols=95 Identities=14% Similarity=0.289 Sum_probs=79.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|...|++|.+|||+... .+.. ...++++++++||+|++++|...+.+.++.. +.+..+++|.+
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~--~~l~~mk~ga~ 204 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINS--KMLSLFRKGLA 204 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCH--HHHhcCCCCeE
Confidence 7999999888889999999998532 2332 2568999999999999999998898888853 56777999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+|++|...+.....+.+.+.+..+
T Consensus 205 lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 205 IINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred EEECCCccccCHHHHHHHHHcCCc
Confidence 999999999999999988877534
No 101
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.72 E-value=5.8e-08 Score=85.86 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=82.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|++|.+|||++.... ....|.. ..++.+++++||+|++|+|...+.+.++.. ..++.+++|.++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~mk~ga~l 236 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKLMKPTAIL 236 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhcCCCCeEE
Confidence 899999999999999999999875432 2334554 458999999999999999998888888854 467789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+|+...-....+.+.+.+..+
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred EECcCchhcCHHHHHHHHHcCCe
Confidence 99999999999999888876543
No 102
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.70 E-value=9.3e-08 Score=84.38 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=80.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|+.|...|++|.+|||+++..... .....++.+++++||+|++|+|...+.+.++.. ++++.+++|.++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~--~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK--AMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH--HHHhcCCCCcEE
Confidence 89999999999999999999998654322 334568999999999999999988877777753 577889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-..--....+.+.+.+..+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCe
Confidence 99998887777888888876544
No 103
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.66 E-value=6.7e-08 Score=83.52 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=89.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|++|...|++|++|||.....+.....|..+. +++|+++.||+|++++|++.+ +.++.. ++++.+++|.++
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t-~~V~~~--eil~~MK~GaiL 102 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQ-AHVYKA--EVEENLREGQML 102 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHH-HHHHHH--HHHhcCCCCCEE
Confidence 8999999999999999999877555455555687654 899999999999999998655 788752 588889999987
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc-eEeccCCCCHHhh-----hcCceEEEe-c--CCHhhHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT-FLDAPVSGGTKAA-----QEATLTFMV-G--GDKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~~a-----~~g~l~~~~-g--g~~~~~~~~~~ll~~~g~~ 147 (286)
+-.-.-..-.. ......++. ++-+|=..+..-- ..|...+++ - -+..+.+.+..+-..+|..
T Consensus 103 ~f~hgfni~~~----~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 103 LFSHGFNIHFG----QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCT 173 (335)
T ss_pred EECCCcceecC----ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 75433221111 122233443 3345643333321 233322222 1 1234677788888888764
No 104
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.62 E-value=1.7e-07 Score=82.99 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=78.6
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+.+|++|+ ..|.+|++||+++.+.. ..++....++.+++++||+|++++|.....+.++.. +..+.+++|.+
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~--~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA--DLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--HHHhcCCCCcE
Confidence 7999999994 46889999999875431 224555678999999999999999987776665532 36777899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+||+|+........+.+.+.+..+
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCe
Confidence 999999999999999988876544
No 105
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.61 E-value=1.7e-06 Score=84.05 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=115.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHc-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKE-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+||+|++||++++..+.. .+. .++.+.++ +.+++||+||=|+|
T Consensus 323 ~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 401 (715)
T PRK11730 323 IMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVV 401 (715)
T ss_pred hhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEeccc
Confidence 489999999999999999999998865432 111 24555666 45689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceE-EEecC--CHhh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-FMVGG--DKSS 133 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~-~~~gg--~~~~ 133 (286)
..-+++.-++. .+-+.++++.++..-|+..|. .++++.+. +.-+++..-.+..+... .++ ++.|. +++.
T Consensus 402 E~l~~K~~vf~--~l~~~~~~~~ilasNTSsl~i--~~la~~~~-~p~r~~g~Hff~P~~~~---~lVEvv~g~~T~~~~ 473 (715)
T PRK11730 402 ENPKVKAAVLA--EVEQKVREDTILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHRM---PLVEVIRGEKTSDET 473 (715)
T ss_pred CcHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCH--HHHHhhcC-CCccEEEEecCCccccc---ceEEeeCCCCCCHHH
Confidence 87777664443 255556677766543333332 24444443 32334433222222211 122 33332 5889
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++.+..+++.+|+.++.+.+. -|. +.|=+.. ..++|++.+.+ .|.+++++-.++..+.
T Consensus 474 ~~~~~~~~~~lgk~pv~v~d~-pGf----v~nRi~~---~~~~ea~~lv~-~Ga~~e~ID~a~~~~~ 531 (715)
T PRK11730 474 IATVVAYASKMGKTPIVVNDC-PGF----FVNRVLF---PYFAGFSQLLR-DGADFRQIDKVMEKQF 531 (715)
T ss_pred HHHHHHHHHHhCCceEEecCc-Cch----hHHHHHH---HHHHHHHHHHH-cCCCHHHHHHHHHhhC
Confidence 999999999999999888752 222 2344433 34578887766 4588888888776543
No 106
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.59 E-value=4e-06 Score=72.51 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++..||+|.++|++++.+++..+ .| ++...++. .+++||+||-+++
T Consensus 13 ~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~ 91 (307)
T COG1250 13 VMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVV 91 (307)
T ss_pred chhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEecc
Confidence 39999999999988999999999765433221 22 34444444 6789999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEE-cCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid-~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
-..+++.-++. .+-+..+++.++-. +|+.++. ++++.+ ++.-+|+..-.++.+.- -.|+=++.| +++
T Consensus 92 E~levK~~vf~--~l~~~~~~~aIlASNTSsl~it---~ia~~~-~rper~iG~HFfNP~~~---m~LVEvI~g~~T~~e 162 (307)
T COG1250 92 EDLELKKQVFA--ELEALAKPDAILASNTSSLSIT---ELAEAL-KRPERFIGLHFFNPVPL---MPLVEVIRGEKTSDE 162 (307)
T ss_pred ccHHHHHHHHH--HHHhhcCCCcEEeeccCCCCHH---HHHHHh-CCchhEEEEeccCCCCc---ceeEEEecCCCCCHH
Confidence 88777654443 13334455555542 3333333 334443 33223333222232221 223334444 478
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
.++++.++.+.+++.++...+. .|. +.|-+. ...+.|++.+...-..+++++-.++..+.|
T Consensus 163 ~~~~~~~~~~~igK~~vv~~D~-pGF----i~NRil---~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 163 TVERVVEFAKKIGKTPVVVKDV-PGF----IVNRLL---AALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred HHHHHHHHHHHcCCCCEeecCC-Cce----ehHhHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 9999999999999876554541 222 224333 345688988888888999999998886544
No 107
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=1.6e-07 Score=80.86 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=55.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||.+|.++|++|++|+++.. ++++++++||+||+|++.+..++.++ +++|.+
T Consensus 170 ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~---------ik~Gai 226 (301)
T PRK14194 170 IVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW---------LKPGAV 226 (301)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh---------ccCCcE
Confidence 4899999999999999999987642 78999999999999999987766654 568999
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|||+|+.
T Consensus 227 VIDvgin 233 (301)
T PRK14194 227 VIDVGIN 233 (301)
T ss_pred EEEeccc
Confidence 9999864
No 108
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.54 E-value=2.8e-06 Score=82.44 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=116.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+|++|++||++++..++..+ . .++.+.+. +.+++||+||=|++
T Consensus 323 ~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 401 (714)
T TIGR02437 323 IMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVV 401 (714)
T ss_pred hHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCc
Confidence 48999999999999999999999887543221 1 24555666 44689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSS 133 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~ 133 (286)
-+-+++.-++. .+-+.++++.++..-|+..|. .++++.+. +.-+++..-.+..+.. -.++=++.| ++++
T Consensus 402 E~l~~K~~vf~--~l~~~~~~~~ilasnTS~l~i--~~ia~~~~-~p~r~ig~Hff~P~~~---~~lvEvv~g~~Ts~~~ 473 (714)
T TIGR02437 402 ENPKVKAAVLA--EVEQHVREDAILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHR---MPLVEVIRGEKSSDET 473 (714)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CcccEEEEecCCCccc---CceEeecCCCCCCHHH
Confidence 87777654443 255566777776543333232 23444432 2223333222222111 122323333 5789
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++++..+++.+|+.++.+.+. -| .+.|=+.. ..+.|++.+.+ .|.+++++-.++..+.
T Consensus 474 ~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl~~---~~~~ea~~l~~-eG~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 474 IATVVAYASKMGKTPIVVNDC-PG----FFVNRVLF---PYFGGFSKLLR-DGADFVRIDKVMEKQF 531 (714)
T ss_pred HHHHHHHHHHcCCEEEEeCCc-cc----chHHHHHH---HHHHHHHHHHH-CCCCHHHHHHHHHhcC
Confidence 999999999999999888752 22 23355433 34688888875 5699999888876543
No 109
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.54 E-value=3.3e-06 Score=82.04 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=113.5
Q ss_pred CccHHHHHHHH-hCCCcEEEEcCCchHHHHHH-----------Hc-------------CCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQ-FQGHDVIVYDKNTDASQTLA-----------KE-------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adivi~~v 55 (286)
.||..+|..++ .+|++|++||++++..+... +. .++.+++. +.+++||+||=|+
T Consensus 319 ~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav 397 (708)
T PRK11154 319 LMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAV 397 (708)
T ss_pred hhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeecc
Confidence 48999999999 88999999999987544321 11 24555666 5678999999999
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
|..-.++.-++. .+-+..+++.++...|+..|. .++++.+. +.-+|+..-.+..+... .++=++-| +++
T Consensus 398 ~E~~~~K~~v~~--~le~~~~~~~ilasnTS~l~i--~~la~~~~-~p~r~ig~Hff~P~~~~---~lVEvv~g~~Ts~~ 469 (708)
T PRK11154 398 FEDLALKQQMVA--EVEQNCAPHTIFASNTSSLPI--GQIAAAAA-RPEQVIGLHYFSPVEKM---PLVEVIPHAKTSAE 469 (708)
T ss_pred cccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCH--HHHHHhcC-cccceEEEecCCccccC---ceEEEECCCCCCHH
Confidence 987777654443 255567788777644333333 23444432 22344433222222211 12223333 578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
.++.+..+++.+|+.++.+.+ ..|.. .|=+. ...++|++.+.+. |++++++-.++.
T Consensus 470 ~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 470 TIATTVALAKKQGKTPIVVRD-GAGFY----VNRIL---APYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHcCCceEEEec-cCcHH----HHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999998888865 22222 23333 3456888888775 888888777654
No 110
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.53 E-value=3.8e-06 Score=81.47 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=112.1
Q ss_pred CccHHHHHHHH-hCCCcEEEEcCCchHHHHHH-----------Hc-------------CCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQ-FQGHDVIVYDKNTDASQTLA-----------KE-------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adivi~~v 55 (286)
.||..+|..++ ++|++|++||++++..+... +. .++.++++ +.+++||+||=|+
T Consensus 314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav 392 (699)
T TIGR02440 314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAV 392 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEec
Confidence 38999999998 58999999999987544321 11 24455666 4678999999999
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
|..-+++.-++. .+-+..+++.++..-|+..|. .++++.+. +.-+++..-.+..+... .++=++.| +++
T Consensus 393 ~E~l~~K~~v~~--~l~~~~~~~~ilasnTS~l~i--~~la~~~~-~p~r~~g~HffnP~~~~---~lVEvv~g~~T~~~ 464 (699)
T TIGR02440 393 FEDLALKHQMVK--DIEQECAAHTIFASNTSSLPI--GQIAAAAS-RPENVIGLHYFSPVEKM---PLVEVIPHAGTSEQ 464 (699)
T ss_pred cccHHHHHHHHH--HHHhhCCCCcEEEeCCCCCCH--HHHHHhcC-CcccEEEEecCCccccC---ceEEEeCCCCCCHH
Confidence 988777654432 255556677666543322222 24444443 32334433222222211 12333333 578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
.++.+..+++.+|+.++.+.+. -|. +.|-+. ...++|++.+.+ .|++++++-.++.
T Consensus 465 ~~~~~~~~~~~~gk~pv~v~d~-pGf----i~nRl~---~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 465 TIATTVALAKKQGKTPIVVADK-AGF----YVNRIL---APYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHcCCeEEEEccc-cch----HHHHHH---HHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 9999999999999999988752 222 224333 345688877766 6788888777763
No 111
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.53 E-value=3.1e-07 Score=86.15 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=83.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|...|.+|.+||++... +.....|+...+++.|++++||+|++++|...+.+.++.. +.++.+++|.++
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 225 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--EELAKMKKGVII 225 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH--HHHhcCCCCeEE
Confidence 7999999999999999999986322 2234457766678999999999999999988888888853 467789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 226 IN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 226 VNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred EEcCCCceeCHHHHHHHHHcCCee
Confidence 999999988888998888776543
No 112
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.53 E-value=2.6e-07 Score=80.93 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|.+|||++++...+.. .....++.+++++||+|++++|...+.+.++.. +.+..+++|.++
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~mk~ga~l 222 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQLPDGAYL 222 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhcCCCCcEE
Confidence 7999999999999999999998754321111 112457899999999999999999999998863 567789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|+++-...-.-..+.+.+.+..+.
T Consensus 223 IN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 223 LNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred EECCCccccCHHHHHHHHhcCCee
Confidence 999988877777888887765443
No 113
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.51 E-value=2.1e-07 Score=74.99 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=77.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|..-|.+|++|||+..........+. ...+++|++++||+|++++|...+.+.++.. ..+..+++|.++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~mk~ga~l 123 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAKMKPGAVL 123 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHTSTTTEEE
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee--eeeeccccceEE
Confidence 7999999999999999999999886654555565 4559999999999999999976666666653 456678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQ 103 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g 103 (286)
|+++-...-.-..+.+.+.+.-
T Consensus 124 vN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 124 VNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp EESSSGGGB-HHHHHHHHHTTS
T ss_pred EeccchhhhhhhHHHHHHhhcc
Confidence 9999887777778888877653
No 114
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.50 E-value=2.9e-06 Score=82.58 Aligned_cols=177 Identities=13% Similarity=0.115 Sum_probs=111.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+|++|++||++++.+++..+ . .++.+.+++ .+++||+||=+|+
T Consensus 345 ~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~ 423 (737)
T TIGR02441 345 LMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVF 423 (737)
T ss_pred HhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhcc
Confidence 48999999999999999999999887544211 1 245566675 5689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEE-cCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKS 132 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid-~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~ 132 (286)
.+-+++.-++. .+-+.++++.++.. +|+.++ .++++.+. +.-+++..-.+..+.. -.++=++. .+++
T Consensus 424 E~l~~K~~vf~--~l~~~~~~~~ilasNTSsl~i---~~la~~~~-~p~r~ig~Hff~P~~~---m~LvEvv~g~~Ts~~ 494 (737)
T TIGR02441 424 EDLSLKHKVIK--EVEAVVPPHCIIASNTSALPI---KDIAAVSS-RPEKVIGMHYFSPVDK---MQLLEIITHDGTSKD 494 (737)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CccceEEEeccCCccc---CceEEEeCCCCCCHH
Confidence 88777764443 25556677777653 333333 23444432 2223333222221111 12222333 2578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
.++++..+++.+|+.++.+.+. -|. +.|=+. ...+.|++.+. ..|++++++-.++
T Consensus 495 ~~~~~~~~~~~lgk~pv~v~d~-pGF----i~NRi~---~~~~~ea~~lv-~eGv~~~~ID~a~ 549 (737)
T TIGR02441 495 TLASAVAVGLKQGKVVIVVKDG-PGF----YTTRCL---GPMLAEVIRLL-QEGVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHCCCeEEEECCc-CCc----hHHHHH---HHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 9999999999999999888752 222 234433 34567887776 4478888877764
No 115
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.47 E-value=5.4e-07 Score=84.53 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=82.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|.+|||+... +.....|+... ++.|++++||+|++++|...+.+.++.. +.++.+++|.++
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--~~l~~mk~ga~l 226 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--EELAKMKPGVRI 226 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH--HHHhcCCCCeEE
Confidence 7999999999999999999996432 23344577666 8999999999999999998888988853 477889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||++....-....+.+.+.+..+
T Consensus 227 IN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 227 INCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred EECCCCceeCHHHHHHHHhcCCe
Confidence 99999998888889888876543
No 116
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.45 E-value=4.5e-07 Score=78.18 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=53.8
Q ss_pred CccHHHHHHHHhCCCcEEEEc-CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.||.+||.+|.++|++|++|+ |++ ++++++++||+||+|++.+..++.++ +++|.
T Consensus 169 ~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---------lk~Ga 224 (296)
T PRK14188 169 LVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---------IKPGA 224 (296)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe---------ecCCC
Confidence 389999999999999999995 764 46889999999999999987666554 56899
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+|||++..
T Consensus 225 vVIDvGin 232 (296)
T PRK14188 225 TVIDVGIN 232 (296)
T ss_pred EEEEcCCc
Confidence 99999864
No 117
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.42 E-value=3.7e-07 Score=80.17 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=73.9
Q ss_pred ccHHHHHHHH--hCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQ--FQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~--~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..+. +...+|++|||++++.+.+.+. | +..+.++.++++++|+|++|.+.+ +.++.. +
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~-----~ 207 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVRG-----E 207 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEecH-----H
Confidence 5667776444 3447899999999998888654 4 566788999999999998888864 344431 3
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+ +|++++..+...+++...+.+++..|+|
T Consensus 208 ~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 208 WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 467887 7888888888888888777777766776
No 118
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.39 E-value=2.1e-05 Score=64.15 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=79.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+++.|.++||.|+ +.+||+||+|+|- ..+.+++.. +. .+|
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i~~---~~------~~v 55 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYIES---YD------NNF 55 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHHHH---hC------CeE
Confidence 89999999999999986 3689999999995 566777653 22 379
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcC--ceEEEec--CCHhhHHHHHHHHHHhcCCeEecCCcch
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEA--TLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGDSGN 156 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~~g~~v~~~g~~g~ 156 (286)
+|.++++-... + ....|+. .|++|. ..+..+ ...+++. .+++.++.++.+++ |.+++.+.+..+
T Consensus 56 ~Dv~SvK~~i~----~----~~~~~vg~HPMfGp-~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeH 124 (197)
T PRK06444 56 VEISSVKWPFK----K----YSGKIVSIHPLFGP-MSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTADEH 124 (197)
T ss_pred EeccccCHHHH----H----hcCCEEecCCCCCC-CcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHH
Confidence 99999876432 1 2346775 699983 333221 2233342 23566778888888 778888876555
Q ss_pred HHHHHHHHHH
Q psy764 157 GQVAKLCNNM 166 (286)
Q Consensus 157 a~~~Kl~~n~ 166 (286)
-..+-.++.+
T Consensus 125 D~~~A~ishL 134 (197)
T PRK06444 125 DLLMSEIMVK 134 (197)
T ss_pred HHHHHHHHHH
Confidence 5555544333
No 119
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.38 E-value=2.1e-06 Score=74.38 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=74.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|...|.+|+++||++++.+.+.+.|.... +++.+.++++|+||.++|..-.-+ ...+.++++.
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~-------~~l~~~k~~a 234 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA-------DVLSKLPKHA 234 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH-------HHHhcCCCCe
Confidence 7899999999999999999999988777766665543 356788899999999999641111 2445578899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
++||+++....+-. +..++.|+..+-+|
T Consensus 235 liIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 235 VIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred EEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 99999886655433 34567787776555
No 120
>KOG2711|consensus
Probab=98.36 E-value=7.3e-06 Score=70.56 Aligned_cols=234 Identities=16% Similarity=0.101 Sum_probs=136.3
Q ss_pred CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCc----h-HHHHHHHHHH---hcCCce
Q psy764 35 ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP----Q-VPQTLSNLAR---EKQITF 106 (286)
Q Consensus 35 ~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p----~-~~~~~~~~~~---~~g~~~ 106 (286)
+.+.+++.++++++|+++..+|. +.+..++++ +...++++...|.++..-. . ..+-+.+.+. .-.+.+
T Consensus 93 vvAv~dl~ea~~dADilvf~vPh-Qf~~~ic~~---l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v 168 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPH-QFIPRICEQ---LKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV 168 (372)
T ss_pred eEecchHHHHhccCCEEEEeCCh-hhHHHHHHH---HhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee
Confidence 57778999999999999999994 788999986 7778889999898875432 1 1222222222 223557
Q ss_pred EeccCCCCHHhhhcCceEEEecCCHhhHH-HHHHHHHHhcCCeEecCC---c--------------chHHHHHHHHHHHH
Q psy764 107 LDAPVSGGTKAAQEATLTFMVGGDKSSLE-KAKPILKCMGRNIVHCGD---S--------------GNGQVAKLCNNMLL 168 (286)
Q Consensus 107 ~~~pv~g~~~~a~~g~l~~~~gg~~~~~~-~~~~ll~~~g~~v~~~g~---~--------------g~a~~~Kl~~n~~~ 168 (286)
+.+|....+...++-+-..+.+-++.... .+..+|+.-..++..+.+ + |....+.+.+|+..
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTka 248 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKA 248 (372)
T ss_pred ecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHH
Confidence 77676666655555443333333333222 367777776665554443 2 33333447889999
Q ss_pred HHHHHHHHHHHHHHHHc-CC-CHHHHHH------HHHcc-CCCcc-cccccCCCC---CccccCCCCCCCCCCccchhHH
Q psy764 169 GVTMMGVAEAMNLGVKL-GM-NAKLLSD------VINTS-SGRCW-SSEVYNPVP---GVLSNVPASNNYNGGFKISLLA 235 (286)
Q Consensus 169 ~~~~~~~~Ea~~l~~~~-Gl-~~~~~~~------~~~~~-~~~s~-~~~~~~~~~---~~~~~~~~~~~~~~~f~~~~~~ 235 (286)
+++-.++.|+..+++.+ .- .++++.+ ++.+- .|++. ..+.+...- ......+..+ ....+.
T Consensus 249 Ai~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~G------q~~QG~ 322 (372)
T KOG2711|consen 249 AIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNG------QKLQGP 322 (372)
T ss_pred HHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCC------CcccCc
Confidence 99999999999998864 22 3444333 22221 11111 001000000 0000000111 011223
Q ss_pred HHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 236 KDMKLAEDLANRCTA--QTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 236 kd~~~~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
-..+.+.++++..|+ ..|++.+++++.. +++...++++.++..
T Consensus 323 ~Ta~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~ 367 (372)
T KOG2711|consen 323 ATAKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH 367 (372)
T ss_pred HHHHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence 344568888888888 7899999988764 455666777777653
No 121
>KOG2380|consensus
Probab=98.34 E-value=7.1e-06 Score=70.56 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=127.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHH-HcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccc-cCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLA-KEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILK-HAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~ 77 (286)
.||.-+|..|.++||.|.+.||+. ...++ ..|....+.+.+++ +.+|+|++|+.. ..++.|+.. .-. .++.
T Consensus 62 nmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilat---ypfqrlrr 135 (480)
T KOG2380|consen 62 NMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILAT---YPFQRLRR 135 (480)
T ss_pred cHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHh---cCchhhcc
Confidence 389999999999999999999986 44443 44888888888887 469999999985 567887763 222 3789
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCc-eEEEe----cCC----HhhHHHHHHHHHHhcCC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEAT-LTFMV----GGD----KSSLEKAKPILKCMGRN 147 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~-l~~~~----gg~----~~~~~~~~~ll~~~g~~ 147 (286)
|++++|..++.........+.+.+. +..+ -.|++|......... +.++. .|+ .+-++.+.++|.+.+.+
T Consensus 136 gtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 136 GTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred ceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 9999999998877777777777654 4444 468888763332222 22222 343 67889999999999998
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHccCCCccc
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMN---AKLLSDVINTSSGRCWS 205 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~---~~~~~~~~~~~~~~s~~ 205 (286)
++++.--..- |.......-.++++..-.+..++.+-++ .|.++++..+....+|.
T Consensus 215 mVemS~eeHD---kiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsfh 272 (480)
T KOG2380|consen 215 MVEMSYEEHD---KIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSFH 272 (480)
T ss_pred EEEEEeeccc---ccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchhh
Confidence 8887621110 1111111223333333334444444333 36666766655555664
No 122
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.33 E-value=1.3e-06 Score=75.15 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=72.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHH-hhcCcEEEEecCChh--HHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTL-ASGAEFIISMLPASQ--DVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~adivi~~v~~~~--~~~~v~~~~~~l~~~ 74 (286)
+|.+++..|++.|++|+++||++++.+.+.+. +.....+..+. ..++|+||.|+|... .+.++.. ....
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~----~~~~ 203 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPV----PAEK 203 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCC----CHHH
Confidence 68899999999999999999999988777543 32222334333 357999999999641 1211111 1234
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++.+++|+++..+.+ .+.+..+++|+.+++
T Consensus 204 l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 204 LKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred cCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 67899999999987776 577788888988887
No 123
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.25 E-value=2.6e-06 Score=66.17 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.|.+.|.||..+|.+|++..|..+ ..++..+.|..+. +.+|+++.+|+|++.+|| ..-.+++.. .+.+.+++|++
T Consensus 15 QG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~~--~I~p~l~~G~~ 90 (165)
T PF07991_consen 15 QGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYEE--EIAPNLKPGAT 90 (165)
T ss_dssp HHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHHH--HHHHHS-TT-E
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHHH--HHHhhCCCCCE
Confidence 378899999999999999988766 6677777888765 799999999999999996 455777632 48889999998
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
++-...
T Consensus 91 L~fahG 96 (165)
T PF07991_consen 91 LVFAHG 96 (165)
T ss_dssp EEESSS
T ss_pred EEeCCc
Confidence 885443
No 124
>PLN02928 oxidoreductase family protein
Probab=98.25 E-value=4.3e-06 Score=74.37 Aligned_cols=100 Identities=9% Similarity=0.066 Sum_probs=77.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH------------HHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL------------AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||..+|+.|...|.+|++|||+..+.... ...+. ...++.+++++||+|++++|.....+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~-- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVND-- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCH--
Confidence 79999999999999999999984332111 11112 3568999999999999999988888888764
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~ 104 (286)
..++.+++|.++||++-..--.-..+.+.+.+.-+
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 46777999999999998877777778887766543
No 125
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.20 E-value=4.9e-06 Score=74.57 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChh----HHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ----DVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~----~~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|+.|...|++|.+||+..... .+.....++++++++||+|++++|... ..+.++.. ..+..+++
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhcCCC
Confidence 79999999999999999999864321 122345689999999999999999654 35555543 35677999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQ 103 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g 103 (286)
|.++|++|....-....+.+.+.+..
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~ 225 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGE 225 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCC
Confidence 99999999999988888888886653
No 126
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.19 E-value=9.1e-06 Score=69.86 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhC--CCcEE-EEcCCchHHHHHHHc-C-CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ--GHDVI-VYDKNTDASQTLAKE-G-ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++++|.+. +++|. +|||++++.+.+.+. | ...++++++++.++|+|++|.|++ ...++.. ..+.
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~~~------~aL~ 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAIVE------PVLA 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHHHH------HHHH
Confidence 688899999863 67765 789999998877654 5 356789999999999999999975 4455543 2345
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.|+.++..|+......+++.+.++++|..+.
T Consensus 90 aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 90 AGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred cCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 6776776676666677888888888887653
No 127
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.19 E-value=1.4e-05 Score=65.59 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=68.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+|++|.+.|++|+++|+++++.+.+.+. |....++ .++. .+||+++.|-......++.+ +.+ +.+
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~-------~~l-~~~ 109 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI-------PQL-KAK 109 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH-------HHc-CCC
Confidence 79999999999999999999999988888765 7665544 4444 48999996654322222222 223 357
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|++..+... +..+-.+.+.++|+.|++
T Consensus 110 ~v~~~AN~~~-~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 110 AIAGAANNQL-ADPRHGQMLHERGILYAP 137 (200)
T ss_pred EEEECCcCcc-CCHhHHHHHHHCCCEEeC
Confidence 8888765433 324556778899999986
No 128
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.17 E-value=5.3e-06 Score=72.84 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=80.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+||+...+- .....+....+++.+++++||+|++.+|-....+.++.. ..+..+++|.++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~--~~~a~MK~gail 229 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA--EELAKMKPGAIL 229 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH--HHHhhCCCCeEE
Confidence 79999999999999999999943322 122346777889999999999999999988888888865 456678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhc
Q psy764 82 IDSSTVDPQVPQTLSNLAREK 102 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~ 102 (286)
|+++-...-.-..+.+.+.+.
T Consensus 230 IN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 230 INAARGGVVDEDALLAALDSG 250 (324)
T ss_pred EECCCcceecHHHHHHHHHcC
Confidence 999988887778888877664
No 129
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=70.45 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=81.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+++..-|.+|..|||++. -+.-...+....+ +.|++++||+|.+.+|...+.+.++.. ..++.+++|.++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~mk~ga~l 232 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAKMKPGAIL 232 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHhCCCCeEE
Confidence 899999999977789999999975 2222333466666 999999999999999998899988875 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-..--..+.+.+.+.+..+
T Consensus 233 VNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 233 VNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred EECCCccccCHHHHHHHHHhCCc
Confidence 99999888888888888877543
No 130
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.14 E-value=9.2e-06 Score=73.86 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=80.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+...|.+|.+||+++.. ...++....+++|++++||+|++++|...+.+.++.. ..+..+++|.++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhcCCCCeEE
Confidence 7999999999999999999987432 1124455668999999999999999988888888854 356778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++....-....+.+.+.+..+
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCc
Confidence 99999988888888888876644
No 131
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.11 E-value=7.1e-06 Score=70.23 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||..|.++|+.|++|... +.++++.+++||+||+|++.+..++..+ +++|.+
T Consensus 169 ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~---------ik~Gav 225 (284)
T PRK14179 169 IVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF---------VKEGAV 225 (284)
T ss_pred cCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH---------ccCCcE
Confidence 38999999999999999999422 1268899999999999999987766654 578999
Q ss_pred EEEcCCCC
Q psy764 81 VIDSSTVD 88 (286)
Q Consensus 81 vid~st~~ 88 (286)
|||++...
T Consensus 226 VIDvgin~ 233 (284)
T PRK14179 226 VIDVGMNR 233 (284)
T ss_pred EEEeccee
Confidence 99998643
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.10 E-value=1.5e-05 Score=69.34 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=72.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..++..|.+.|.+|+++||++++.+.....|.... +++.+.+.++|+||.++|..-..++ ..+.++++.
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~-------~l~~~~~g~ 235 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE-------VLSKMPPEA 235 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH-------HHHcCCCCc
Confidence 6889999999999999999999988777777776644 3567888999999999985322222 344577899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+|||+++....+.. +...++|+..+-.
T Consensus 236 vIIDla~~pggtd~---~~a~~~Gv~~~~~ 262 (296)
T PRK08306 236 LIIDLASKPGGTDF---EYAEKRGIKALLA 262 (296)
T ss_pred EEEEEccCCCCcCe---eehhhCCeEEEEE
Confidence 99999876554332 2445667666543
No 133
>KOG2304|consensus
Probab=98.05 E-value=3e-05 Score=63.15 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=111.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c------------------CCcccCCHHHHhhcCcEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E------------------GANMALSLSTLASGAEFI 51 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~------------------g~~~~~s~~e~~~~adiv 51 (286)
+||+.+|+.-+..|++|+++|+++++..+..+ . .++.+.+..+++.++|+|
T Consensus 21 ~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadli 100 (298)
T KOG2304|consen 21 QMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLI 100 (298)
T ss_pred ccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHH
Confidence 59999999999999999999999886554432 0 145667778888888888
Q ss_pred EEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh----cCCceE-eccCCCCHHhhhcCceEEE
Q psy764 52 ISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE----KQITFL-DAPVSGGTKAAQEATLTFM 126 (286)
Q Consensus 52 i~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~----~g~~~~-~~pv~g~~~~a~~g~l~~~ 126 (286)
|-++-...+++.=++. .+-...++..++. +.|.+-.. .+++..+.. .|.+|+ +.|++.-.+-....
T Consensus 101 iEAivEn~diK~~lF~--~l~~~ak~~~il~-tNTSSl~l-t~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~----- 171 (298)
T KOG2304|consen 101 IEAIVENLDIKRKLFK--DLDKIAKSSTILA-TNTSSLSL-TDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTD----- 171 (298)
T ss_pred HHHHHHhHHHHHHHHH--HHHhhcccceEEe-ecccceeH-HHHHhhccChhhhceeeccCCchhHHHhhhhcCC-----
Confidence 7766544444433322 1222233444443 33333322 233333222 256665 34554322211111
Q ss_pred ecCCHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 127 VGGDKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 127 ~gg~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
-.+++.|.....+-+.+|+..+.+-+ +| - +.|-++ +--+.|++++.++-..+.+++-..+.-+++
T Consensus 172 -~TS~eTf~~l~~f~k~~gKttVackDtpG--F----IVNRlL---iPyl~ea~r~yerGdAskeDIDtaMklGag 237 (298)
T KOG2304|consen 172 -DTSDETFNALVDFGKAVGKTTVACKDTPG--F----IVNRLL---IPYLMEAIRMYERGDASKEDIDTAMKLGAG 237 (298)
T ss_pred -CCCHHHHHHHHHHHHHhCCCceeecCCCc--h----hhhHHH---HHHHHHHHHHHHhcCCcHhhHHHHHhccCC
Confidence 12478888888899999998777665 33 2 234332 335689999999998888888777776543
No 134
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.01 E-value=3e-05 Score=68.34 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=77.7
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.+. .-|.+|.+|||.... +.....|... .++.+++++||+|++++|-..+.+.++.. ..+..+++|.+
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhcCCCCeE
Confidence 7899999987 678899999987432 1222345554 48999999999999999988888888854 36677999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+|+++-...-.-..+.+.+.+..+
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCCe
Confidence 999998887777788888776543
No 135
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.00 E-value=3.5e-05 Score=66.05 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=72.6
Q ss_pred ccHHHHHHHHhCC--Cc-EEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG--HD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..+++.|.+.+ ++ +.+|||++++.+.+.+. +...++++++++.++|+|++|.|. ....++... .+..
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~~~------al~~ 84 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVVPK------SLEN 84 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHHHH------HHHc
Confidence 7888999988763 55 56789999998887653 677788999998999999999985 566665532 2445
Q ss_pred CCEEEEcCC---CCchHHHHHHHHHHhcCCce
Q psy764 78 GVIVIDSST---VDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 78 g~ivid~st---~~p~~~~~~~~~~~~~g~~~ 106 (286)
|+-++.+|+ ..+...+++.+..++.|..+
T Consensus 85 Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 85 GKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred CCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 666666665 35667778888888877543
No 136
>KOG2305|consensus
Probab=97.98 E-value=7.9e-05 Score=60.79 Aligned_cols=187 Identities=18% Similarity=0.188 Sum_probs=118.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC--------------CcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG--------------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g--------------~~~~~s~~e~~~~adivi~~v 55 (286)
++|+++|--|+..||+|..||+.++.+... .+.| +..+.++.|+++++=.|--|+
T Consensus 13 l~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcv 92 (313)
T KOG2305|consen 13 LVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECV 92 (313)
T ss_pred cccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhc
Confidence 479999999999999999999998654221 1112 567789999999998888899
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~ 132 (286)
|.+-.++.-+.. -++.+...++|+..||..-.-+ ...+-+..+.-..+..|+...- . -.++=++- ..++
T Consensus 93 pE~L~lkk~ly~---qlD~i~d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy-f---iPLvElVPaPwTsp~ 164 (313)
T KOG2305|consen 93 PEDLNLKKQLYK---QLDEIADPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY-F---IPLVELVPAPWTSPD 164 (313)
T ss_pred hHhhHHHHHHHH---HHHHhcCCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc-c---cchheeccCCCCChh
Confidence 976665543332 2333334456665554432222 2233333443446667765321 0 01122222 2467
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR 202 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~ 202 (286)
.+++.+.+++++|.+++.....-.|.++ |- ...+.++|..++...-+++..++-.+++.+-|-
T Consensus 165 tVdrt~~lM~sigq~pV~l~rei~Gf~l----nr---iq~Ailne~wrLvasGil~v~dvD~VmS~GLG~ 227 (313)
T KOG2305|consen 165 TVDRTRALMRSIGQEPVTLKREILGFAL----NR---IQYAILNETWRLVASGILNVNDVDAVMSAGLGP 227 (313)
T ss_pred HHHHHHHHHHHhCCCCccccccccccee----cc---ccHHHHHHHHHHHHccCcchhhHHHHHhcCCCc
Confidence 8899999999999766554432233333 32 234567999999999889988888888877543
No 137
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.98 E-value=3.6e-05 Score=67.52 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||+.... ..+.. ..++.+++++||+|++++|-..+.+.++.. ..++.+++|.++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~Mk~~a~l 228 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKLLKDGAIL 228 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHhCCCCeEE
Confidence 78999999988899999999974321 12333 458999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|+++-...-....+.+.+.+..+.
T Consensus 229 IN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 229 INVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred EECCCccccCHHHHHHHHHcCCeE
Confidence 999988877778888888765443
No 138
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.89 E-value=8.4e-05 Score=65.40 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=75.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||.... .... ..++.+++++||+|++++|-..+.+.++.. ..++.+++|.++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~mk~ga~l 229 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA--RELALMKPGALL 229 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhcCCCCeEE
Confidence 7999999999889999999986421 1112 347999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-...-....+.+.+.+..+
T Consensus 230 IN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 230 INTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred EECCCccccCHHHHHHHHHcCCe
Confidence 99998877777788888776544
No 139
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.85 E-value=5.7e-05 Score=67.65 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=71.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH----HHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD----VLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~----~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.. ..+..+++
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~--~~l~~mk~ 199 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE--KLIRSLKP 199 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH--HHHhcCCC
Confidence 79999999999999999999753211 111 2356899999999999999995442 4445432 35667899
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREK 102 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~ 102 (286)
|.++|++|-...-....+.+.+.+.
T Consensus 200 gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 200 GAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred CcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999999988877778888877664
No 140
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.84 E-value=7.4e-05 Score=65.62 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=75.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||.... .. .. ...++.+++++||+|++++|-....+.++.. ..++.+++|.++
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~mk~ga~l 229 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLALMKPTAFL 229 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHhCCCCeEE
Confidence 7899999998889999999986431 11 11 2458999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-...-....+.+.+.+..+
T Consensus 230 IN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 230 INTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred EECCCccccCHHHHHHHHHcCCc
Confidence 99998887777788888876544
No 141
>PLN02306 hydroxypyruvate reductase
Probab=97.78 E-value=0.00014 Score=65.56 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=76.1
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchH-HHHH-HHcC------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDA-SQTL-AKEG------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||..+|+.|. .-|.+|.+||++... .+.. ...| .....++.|++++||+|++++|-....+.++.
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin 255 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLIN 255 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcC
Confidence 7899999985 668899999988642 1111 1111 12346899999999999999998788888886
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~ 104 (286)
. ..++.+++|.++|+++-..--....+.+.+.+..+
T Consensus 256 ~--~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 256 K--ERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred H--HHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 5 45677999999999998777777778787766433
No 142
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.76 E-value=0.0013 Score=55.35 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=83.3
Q ss_pred cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC---ceEec
Q psy764 33 EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI---TFLDA 109 (286)
Q Consensus 33 ~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~---~~~~~ 109 (286)
.|++++++-.|+++++|++|+-+|-....-.++.. +.++++.|.+|.+++|++|...-++-+.+.++.+ .|.++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikk---i~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPa 203 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEK---FADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPG 203 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHH---HHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 36888899999999999999999976654555553 7788999999999999999887777666655543 34455
Q ss_pred cCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 110 PVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 110 pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.|-|.+ |. .+..-| +++.++++.++.++.++..|.+-
T Consensus 204 aVPgt~-----Gq-~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 204 AVPEMK-----GQ-VYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCCCCC-----Cc-eecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 555555 43 222222 67889999999999999877654
No 143
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00091 Score=54.79 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=109.4
Q ss_pred HHhCCCcEE----EEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC
Q psy764 10 LQFQGHDVI----VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 85 (286)
Q Consensus 10 L~~~G~~V~----~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s 85 (286)
|.+.-|.++ +..|++++++.|.+.-+-...+.+...+-.+++|+-+|+. .+..+.. ....+||+++++||
T Consensus 26 ~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa-----~~~~rpg~iv~HcS 99 (289)
T COG5495 26 LLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAA-----TSLNRPGTIVAHCS 99 (289)
T ss_pred HHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHH-----hcccCCCeEEEEcc
Confidence 445555433 2368888888776653333334444556678899999974 4455543 22356899999999
Q ss_pred CCCchHHHHHHHHHHhcCCceEe-cc---CCCCHHhhh--cCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 86 TVDPQVPQTLSNLAREKQITFLD-AP---VSGGTKAAQ--EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 86 t~~p~~~~~~~~~~~~~g~~~~~-~p---v~g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
...... +.+.+.+.|..-.+ .| .+|.+...+ .++...+..+|+.-...++.+...||.+.+.+-+ +.-..
T Consensus 100 ga~~~~---il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~-~~r~l 175 (289)
T COG5495 100 GANGSG---ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVRE-EARIL 175 (289)
T ss_pred CCCchh---hhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeech-hHHHH
Confidence 865543 33444555543222 23 334555544 4665555578887778899999999998887754 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~ 189 (286)
+-...|.-.......+.|++.+-+..|+|.
T Consensus 176 YHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 176 YHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 555555555556678899999999999884
No 144
>KOG0069|consensus
Probab=97.74 E-value=0.00012 Score=64.00 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=79.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|..+.-++|++.+.+...+.+.. ..+..+.+.++|+|++|+|.....+.++.. .++..+++|.++
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~mk~g~vl 249 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEKMKDGAVL 249 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHhcCCCeEE
Confidence 89999999999884455557877766666666655 568999999999999999999999999875 567789999999
Q ss_pred EEcCCCCchHHHHHHHHHHh
Q psy764 82 IDSSTVDPQVPQTLSNLARE 101 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~ 101 (286)
|+++-...-.-+.+.+.+.+
T Consensus 250 VN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 250 VNTARGAIIDEEALVEALKS 269 (336)
T ss_pred EeccccccccHHHHHHHHhc
Confidence 99988877777777777654
No 145
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.73 E-value=0.0015 Score=54.99 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=82.3
Q ss_pred cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCc---eEec
Q psy764 33 EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT---FLDA 109 (286)
Q Consensus 33 ~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~---~~~~ 109 (286)
.|++++++-.|+++++|++|+-+|-......++.. +.++++.|.+|.+++|++|...-++-+.+.++.+. |.++
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikk---ii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPa 201 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKK---FIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPG 201 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHH---HHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCC
Confidence 36888899999999999999999976644555553 77889999999999999998777776666555433 4444
Q ss_pred cCCCCHHhhhcCceEEEec-CCHhhHHHHHHHHHHhcCCeEecC
Q psy764 110 PVSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 110 pv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.|-|.+ +...+.-| .+++.++++.++.++.++..+.+-
T Consensus 202 aVPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 202 CVPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 444443 33233222 268889999999999999877653
No 146
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.70 E-value=5.6e-05 Score=58.98 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=61.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCC--------------HHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALS--------------LSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s--------------~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|..|.++|++|.++.|++ +.+.+.+.|.+.... ..+..+..|+||+|++. .++++++..
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~~~~~~l~~ 86 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-YQLEQALQS 86 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-GGHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-cchHHHHHH
Confidence 79999999999999999999998 888887776433222 23456789999999996 577888875
Q ss_pred CccccccCCCCCEEEEcCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~ 87 (286)
+.+.+.+++.|+-+-+.
T Consensus 87 ---l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 87 ---LKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ---HCTGEETTEEEEEESSS
T ss_pred ---HhhccCCCcEEEEEeCC
Confidence 77777787666665554
No 147
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.62 E-value=0.00011 Score=55.31 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=49.8
Q ss_pred ccHHHHHHHHhC-CCcEEEE-cCCchHHHHHHHcCCcc----cC--CHHHH-hhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVY-DKNTDASQTLAKEGANM----AL--SLSTL-ASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~-dr~~~~~~~l~~~g~~~----~~--s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..++..|.+. ++++... ++++++.+.+...+... .. +..+. ..++|+||+|+|++...+.+. . +.
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~-~---~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKEIAP-L---LP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHHHHH-H---HH
Confidence 456677777774 7776665 66554444443332111 11 11112 258999999999875544433 1 44
Q ss_pred ccCCCCCEEEEcCCCC
Q psy764 73 KHAKPGVIVIDSSTVD 88 (286)
Q Consensus 73 ~~l~~g~ivid~st~~ 88 (286)
..+.+|++|||+|+..
T Consensus 87 ~~~~~g~~viD~s~~~ 102 (122)
T smart00859 87 KAAEAGVKVIDLSSAF 102 (122)
T ss_pred hhhcCCCEEEECCccc
Confidence 5568999999999864
No 148
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.58 E-value=0.00014 Score=64.26 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=54.2
Q ss_pred hCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC
Q psy764 12 FQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 85 (286)
Q Consensus 12 ~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s 85 (286)
....+|.+|||++++.+.+.+. | +..++++++++++||+|++|+|+. +.++. ...+++|..|...+
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~P~~~-----~~~l~~g~~v~~vG 222 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---KPVVK-----ADWVSEGTHINAIG 222 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---CcEec-----HHHcCCCCEEEecC
Confidence 3456899999999998877542 5 456789999999999999999964 23332 23468999988888
Q ss_pred CCCch
Q psy764 86 TVDPQ 90 (286)
Q Consensus 86 t~~p~ 90 (286)
+..|.
T Consensus 223 s~~p~ 227 (325)
T TIGR02371 223 ADAPG 227 (325)
T ss_pred CCCcc
Confidence 77664
No 149
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.52 E-value=0.00035 Score=64.96 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=65.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|.+++..|.+.|++|.++||++++.+.+.+. +.... .+..+ +.++|+||.|+|....+.. .+.
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~----------~l~-- 409 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK----------AFP-- 409 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchh----------HHh--
Confidence 68999999999999999999999988877653 22221 22222 4689999999997643211 111
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+++..+.+. +.+.+++.|+..++
T Consensus 410 ~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 410 PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 48999998877665 56677788887765
No 150
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=97.46 E-value=0.0014 Score=63.65 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=86.3
Q ss_pred EEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhh--------hcC
Q psy764 51 IISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAA--------QEA 121 (286)
Q Consensus 51 vi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--------~~g 121 (286)
||+|+| ...+.+++.. +.+.++++.+|.|.++++....+.+.+.+......|+. +|+.|++..- -.+
T Consensus 1 vila~P-v~~~~~~~~~---~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAP-VAQTGPLLAR---IAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcC-HHHHHHHHHH---HhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 689999 5678888875 88888999999999999988777776665443346775 6888865322 256
Q ss_pred ceEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHH
Q psy764 122 TLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLG 169 (286)
Q Consensus 122 ~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~ 169 (286)
...+++-. +.+.++.++++++.+|.+++.+.+-.+-..+-+++.+...
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~ 127 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHV 127 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHH
Confidence 65677743 4678899999999999999999876777777666655443
No 151
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.45 E-value=0.00031 Score=54.99 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|+.|...|-+|++++++|-++-+....|.++. +..+++..+|++|++......+.. ..+..+++|.++
T Consensus 34 vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~~~~mkdgail 106 (162)
T PF00670_consen 34 VGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EHFRQMKDGAIL 106 (162)
T ss_dssp HHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HHHHHS-TTEEE
T ss_pred ccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HHHHHhcCCeEE
Confidence 6899999999999999999999988777777788775 689999999999998876432211 123447889999
Q ss_pred EEcCCCCchH
Q psy764 82 IDSSTVDPQV 91 (286)
Q Consensus 82 id~st~~p~~ 91 (286)
.+.+...-+.
T Consensus 107 ~n~Gh~d~Ei 116 (162)
T PF00670_consen 107 ANAGHFDVEI 116 (162)
T ss_dssp EESSSSTTSB
T ss_pred eccCcCceeE
Confidence 9887765553
No 152
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.44 E-value=0.001 Score=60.12 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=67.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|..+...|.+|+++|+++.+.......|..+. +..++++.+|+||.+..+...+..- ....+++|.++
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~~~~mK~Gail 278 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------HFENMKDGAIV 278 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------HHhcCCCCcEE
Confidence 6889999999999999999999988766666677554 5688899999999998875544431 23457889999
Q ss_pred EEcCCCCc-hHHHHHHHHH
Q psy764 82 IDSSTVDP-QVPQTLSNLA 99 (286)
Q Consensus 82 id~st~~p-~~~~~~~~~~ 99 (286)
++.+-... -....+.+..
T Consensus 279 iN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 279 ANIGHFDVEIDVKALEELA 297 (406)
T ss_pred EEECCCCceeCHHHHHHHH
Confidence 99887654 3444444433
No 153
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00091 Score=59.90 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=78.9
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcC---C-------cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEG---A-------NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||++.|..|+++| ++|++-||++++++++.... + .-.+.+.+++++.|+||.|.|..... .++.
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~k---- 86 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TILK---- 86 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHHH----
Confidence 7999999999999 89999999999999886652 1 22234667888999999999965443 3332
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHH
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTK 116 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~ 116 (286)
..++.|.-++|+|-..+.. .++.+...+.|+..+ ++.+..|..
T Consensus 87 --a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 87 --ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred --HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 3456788899988777775 777778888776554 444444443
No 154
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.42 E-value=0.00027 Score=62.14 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=57.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-C
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-K 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~ 76 (286)
||..+++.|...| ++|+++||++++.+.+.+. |.... ++..+.+.++|+||.|++.+.. ..++.. ..... .
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~---~~~~~~~ 264 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVER---AMKKRSG 264 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHH---HHhhCCC
Confidence 7888999998866 6899999999988777654 54332 3466778899999999998754 333221 11111 2
Q ss_pred CCCEEEEcCC
Q psy764 77 PGVIVIDSST 86 (286)
Q Consensus 77 ~g~ivid~st 86 (286)
++.++||.+-
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 5789999984
No 155
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00031 Score=61.69 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=62.0
Q ss_pred CcEEEEcCCchHHHHHHH----cC---CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 15 HDVIVYDKNTDASQTLAK----EG---ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~----~g---~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
-+|.+|+|+++..+++.. .+ +..++|.++++++||+|++|.|+.+ .++. .+.+++|..|.-+++-
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~-----~~~l~~G~hI~aiGad 227 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLK-----AEWLKPGTHINAIGAD 227 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---Ceec-----HhhcCCCcEEEecCCC
Confidence 479999999999888763 23 4788999999999999999999754 5553 3457889888888776
Q ss_pred CchHHHHHHHH-HHhcCCceEec
Q psy764 88 DPQVPQTLSNL-AREKQITFLDA 109 (286)
Q Consensus 88 ~p~~~~~~~~~-~~~~g~~~~~~ 109 (286)
.|. .+++... +...+..|+|.
T Consensus 228 ~p~-k~Eld~e~l~ra~~vvvD~ 249 (330)
T COG2423 228 APG-KRELDPEVLARADRVVVDS 249 (330)
T ss_pred Ccc-cccCCHHHHHhcCeEEEcC
Confidence 555 4444444 33333556653
No 156
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.42 E-value=0.00025 Score=51.95 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHH---HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
..+++.|.+.|.+|.+||..-....... ..+++.++++.++++++|+||++++.+ ..+.+-. +++...+.++.+
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~~~~~~~ 96 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHHSCSSEE
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHhcCCCCE
Confidence 4678899999999999998866544433 257888999999999999999999975 4444211 124445668899
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|+|+-.+
T Consensus 97 iiD~~~~ 103 (106)
T PF03720_consen 97 IIDGRNI 103 (106)
T ss_dssp EEESSST
T ss_pred EEECccc
Confidence 9998554
No 157
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.35 E-value=0.0025 Score=47.38 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=70.1
Q ss_pred cHHHHHHHHhC--CCcE-EEEcCCchHHHHHHH-cCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 3 STLKLFFLQFQ--GHDV-IVYDKNTDASQTLAK-EGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 3 G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
|......+.+. +.+| .++|+++++.+.+.+ .|...++|..++++ +.|+|++|+|+....+.+.. . +.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~----~---l~ 84 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKK----A---LE 84 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHH----H---HH
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHH----H---HH
Confidence 45555566665 3454 478999999888754 48899999999998 79999999998766555443 2 33
Q ss_pred CC-CEEEEc-CCCCchHHHHHHHHHHhcCCce
Q psy764 77 PG-VIVIDS-STVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 77 ~g-~ivid~-st~~p~~~~~~~~~~~~~g~~~ 106 (286)
.| .++++. -+.++.+.+++.+..+++|..+
T Consensus 85 ~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 85 AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 34 456664 2457888899999888888654
No 158
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=97.33 E-value=0.00058 Score=58.55 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 157 GQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 157 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
|+.+||++|.+.++++++++|++.+.++ .|++.+++.+++. .+...||..+..... +. ..+.+..+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 6899999999999999999999999995 7899988888877 355667765543221 10 11111111111
Q ss_pred hH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 233 LL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 233 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
.. ...-+...+.|-++|+|.|++..+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 11 1123457788889999999776654
No 159
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.31 E-value=0.0012 Score=60.09 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=64.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|..|...|.+|+++|+++.+.......|..+ .+..++++.+|+||.|..+...+..- ....+++|.++
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~------~~~~mK~Gail 295 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAE------HMEAMKDGAIL 295 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHH------HHhcCCCCCEE
Confidence 789999999999999999999998876666667664 46889999999999998765444321 33457889999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
++.+....+
T Consensus 296 iNvG~~d~E 304 (425)
T PRK05476 296 ANIGHFDNE 304 (425)
T ss_pred EEcCCCCCc
Confidence 998776543
No 160
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.31 E-value=0.00073 Score=61.96 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=61.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|..|...|.+|+++++++.+.......|+.. .++.++++.+|+|++|..+.. ++.. ..++.+++|.++
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~----iI~~--e~~~~MKpGAiL 337 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD----IITL--EHMRRMKNNAIV 337 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc----ccCH--HHHhccCCCcEE
Confidence 799999999999999999999988765555567654 468899999999999976533 3221 134557899999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
++++-..
T Consensus 338 INvGr~d 344 (476)
T PTZ00075 338 GNIGHFD 344 (476)
T ss_pred EEcCCCc
Confidence 9987774
No 161
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.26 E-value=0.00046 Score=60.29 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred CcEEEEcCCchHHHHHHHc-----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.+|.+|||++++.+.+.+. | +.+++++++++++||||++|.+.. +.++. .+.++||..|.-..+.
T Consensus 143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---~P~~~-----~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---TPIFN-----RKYLGDEYHVNLAGSN 214 (301)
T ss_pred CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---CcEec-----HHHcCCCceEEecCCC
Confidence 3799999999998877543 4 456789999999999999999964 24442 2346788888877777
Q ss_pred CchHHHHHHH
Q psy764 88 DPQVPQTLSN 97 (286)
Q Consensus 88 ~p~~~~~~~~ 97 (286)
.|.. +++..
T Consensus 215 ~p~~-~El~~ 223 (301)
T PRK06407 215 YPNR-REAEH 223 (301)
T ss_pred CCCc-ccCCH
Confidence 6653 44433
No 162
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.14 E-value=0.0009 Score=58.78 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=52.5
Q ss_pred CcEEEEcCCchHHHHHHHc----CC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|.+|||++++.+.+.+. +. .+++++++++++||||++|.+.. ..++. .+.+++|..|+-.++..
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~P~~~-----~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---EPLLQ-----AEDIQPGTHITAVGADS 225 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---CceeC-----HHHcCCCcEEEecCCCC
Confidence 4899999999998876532 43 44789999999999999999864 34443 23477999998888777
Q ss_pred chH
Q psy764 89 PQV 91 (286)
Q Consensus 89 p~~ 91 (286)
|..
T Consensus 226 p~~ 228 (315)
T PRK06823 226 PGK 228 (315)
T ss_pred ccc
Confidence 753
No 163
>PLN02494 adenosylhomocysteinase
Probab=97.13 E-value=0.0022 Score=58.78 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHH-HHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV-LDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~-~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.+...|.+|+++++++.+.......|.... +..++++.+|+||++..+...+ .+ .++.+++|.+
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e-------~L~~MK~GAi 336 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVD-------HMRKMKNNAI 336 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHH-------HHhcCCCCCE
Confidence 7999999999999999999999987666666677654 6889999999999987764332 33 3345889999
Q ss_pred EEEcCCCC
Q psy764 81 VIDSSTVD 88 (286)
Q Consensus 81 vid~st~~ 88 (286)
+++++...
T Consensus 337 LiNvGr~~ 344 (477)
T PLN02494 337 VCNIGHFD 344 (477)
T ss_pred EEEcCCCC
Confidence 99998743
No 164
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.12 E-value=0.00051 Score=52.62 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHc-C-----CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKE-G-----ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~-g-----~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
+|++.+..|.+.|.+ |+++||+.++++.+.+. + ....++..+...++|+||.|.|.+..
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 578899999999986 99999999999988764 1 22345667778999999999997643
No 165
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.08 E-value=0.0019 Score=56.49 Aligned_cols=97 Identities=12% Similarity=0.241 Sum_probs=65.0
Q ss_pred ccHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc----CCcc-cCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE----GANM-ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|...+..+.. .+ .+|.+|||++++.+.+.+. +... +++.+++++++|+||+|.|.+. .++.. .
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~~------~ 206 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYPE------A 206 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeCc------c
Confidence 45566666654 45 4799999999998887653 3333 4788999999999999999763 44431 3
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+++|+.|...++-.|.. +++...+-.+.-.|+|
T Consensus 207 ~~~g~hi~~iGs~~p~~-~El~~~~~~~a~v~vD 239 (304)
T PRK07340 207 ARAGRLVVAVGAFTPDM-AELAPRTVRGSRLYVD 239 (304)
T ss_pred CCCCCEEEecCCCCCCc-ccCCHHHHhhCeEEEc
Confidence 67999988888877753 3433333222223555
No 166
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.08 E-value=0.0013 Score=53.62 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=55.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCc--c--c---CCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GAN--M--A---LSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~---~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+|..+++.|++.|++|++++|+.++.+.+.+. +.. . . ++..++++++|+||.+.|.+......
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~----- 114 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEK----- 114 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechh-----
Confidence 57889999999999999999999988776542 211 1 1 22346788999999999976531111
Q ss_pred cccccCCCCCEEEEcCCCCc
Q psy764 70 GILKHAKPGVIVIDSSTVDP 89 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p 89 (286)
.....+++.+++|+.-..+
T Consensus 115 -~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 115 -LAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred -hhcccCceeEEEEccCCCC
Confidence 1112345789999865444
No 167
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.07 E-value=0.0025 Score=57.84 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||...+..+...|.+|+++|+++.+.+.....|+... +..++++.+|+||.|..++..+..- ....+++|.++
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l~~mk~Ggil 285 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HFEQMKDGAIV 285 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HHhcCCCCcEE
Confidence 6889999999999999999999999888888887554 4678889999999998876544432 23457889999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
++.+..
T Consensus 286 vnvG~~ 291 (413)
T cd00401 286 CNIGHF 291 (413)
T ss_pred EEeCCC
Confidence 988753
No 168
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.03 E-value=0.0017 Score=56.20 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=67.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-C----CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-G----ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|.+++..|.+.| .+|+++||+.++.+.+.+. + +....+..+.+.++|+||-|+|.+-. .-.....-....+
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~--~~~~~~~~~~~~l 211 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS--GELPLPPLPLSLL 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC--CCCCCCCCCHHHc
Confidence 5788999999999 6899999999998888654 2 11111334667889999999996432 1000000011346
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+++.+|+|+.- .|..+ .+.+..++.|+.+++
T Consensus 212 ~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 212 RPGTIVYDMIY-GPLPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCEEEEeec-CCCCC-HHHHHHHHCcCeecC
Confidence 77899999976 44443 344556777876665
No 169
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.0024 Score=56.52 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred cHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc-----CC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE-----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|...+..+.. .+ .+|.+|||++++.+++.+. ++ ..+++.+++++++|+|++|.|... .++ - .
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p~i-----~-~ 209 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---PVF-----S-E 209 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---cch-----H-H
Confidence 3445555543 34 3799999999998887642 43 356789999999999999999753 333 1 3
Q ss_pred cCCCCCEEEEcCCCCchHH
Q psy764 74 HAKPGVIVIDSSTVDPQVP 92 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~ 92 (286)
.+++|+.|+...+..|...
T Consensus 210 ~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 210 KLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred hcCCCcEEEecCCCCcccc
Confidence 4688999998887777543
No 170
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=96.96 E-value=0.0049 Score=51.56 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=61.8
Q ss_pred EEEEcCCchHHHHHHHc-CCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC---CchH
Q psy764 17 VIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV---DPQV 91 (286)
Q Consensus 17 V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~---~p~~ 91 (286)
+.+||+++++.+.+.+. |+..++++++++ .+.|+|++|.|+. ...++.. +.+..|+-++-.|.. ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~-~H~e~a~------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQE-AVKEYAE------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChH-HHHHHHH------HHHHCCCCEEEECCcccCCHHH
Confidence 56899999999888654 788889999986 5799999999975 4444432 235566544445554 4567
Q ss_pred HHHHHHHHHhcCCceEe
Q psy764 92 PQTLSNLAREKQITFLD 108 (286)
Q Consensus 92 ~~~~~~~~~~~g~~~~~ 108 (286)
.+++.+..++.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 78888888888876554
No 171
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.95 E-value=0.0069 Score=53.79 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhC--CCc-EEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCCh----hHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQ--GHD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPAS----QDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~----~~~~~v~~~~~~l~~ 73 (286)
||...+..+.+. +++ |.++|+++++++++.+. |+..++|.+|++++.|++++++|+. ...+-+. .
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~-------~ 85 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALAR-------A 85 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHH-------H
Confidence 345556666654 356 44679999999988764 8888899999999899999998652 2222222 2
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+-|+----....+++++.+..+++|..+.-
T Consensus 86 aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 86 LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34566655543344468888888888888876663
No 172
>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1.1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....
Probab=96.91 E-value=3.9e-05 Score=59.66 Aligned_cols=109 Identities=15% Similarity=0.046 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHcc----CCCcccccccCCCCCcccc-CCCCCCCC--
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK-LLSDVINTS----SGRCWSSEVYNPVPGVLSN-VPASNNYN-- 226 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~-~~~~~~~~~----~~~s~~~~~~~~~~~~~~~-~~~~~~~~-- 226 (286)
|....+++..|...+.+..++.|+..+++.+|-+++ ++++...-+ ++.|..++++..+..+..+ ...+....
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~ 100 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM 100 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence 556667788999999999999999999999999998 665533222 3333334554322212111 00000000
Q ss_pred CCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 227 GGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 227 ~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
....+......++.+.+++++.++++|++.++++++.
T Consensus 101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 1123456678888999999999999999999999875
No 173
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.89 E-value=0.0032 Score=55.75 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=54.1
Q ss_pred cHHHHHHHH-hCCC-cEEEEcCCchHHHHHHHc-----CCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQ-FQGH-DVIVYDKNTDASQTLAKE-----GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~-~~G~-~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|...+..|. ..+. +|++|||++++.+.+.+. |+. ..++++++++++|+|+.|.|... .++. .+
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p~i~-----~~ 212 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---PILH-----AE 212 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---cEec-----HH
Confidence 455666675 3553 699999999998887642 443 36789999999999999998643 3332 12
Q ss_pred cCCCCCEEEEcCCC
Q psy764 74 HAKPGVIVIDSSTV 87 (286)
Q Consensus 74 ~l~~g~ivid~st~ 87 (286)
.+++|..|...+.-
T Consensus 213 ~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 213 WLEPGQHVTAMGSD 226 (326)
T ss_pred HcCCCcEEEeeCCC
Confidence 46788877765543
No 174
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.86 E-value=0.0014 Score=57.57 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=45.4
Q ss_pred CcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|.+|+|++++++++.+. + +..++|+++++++||||++|.|..... .++. ...+++|..|+..++..
T Consensus 154 ~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P~~~-----~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 154 KEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-PVFD-----AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-ESB------GGGS-TT-EEEE-S-SS
T ss_pred eEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-cccc-----HHHcCCCcEEEEecCCC
Confidence 4799999999998887653 3 456789999999999999999964310 3443 23578899988888776
Q ss_pred chH
Q psy764 89 PQV 91 (286)
Q Consensus 89 p~~ 91 (286)
|..
T Consensus 228 ~~~ 230 (313)
T PF02423_consen 228 PGM 230 (313)
T ss_dssp TTB
T ss_pred Cch
Confidence 653
No 175
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.86 E-value=0.0028 Score=48.77 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCchHHHHHH----HcCCc--ccC----CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 13 QGHDVIVYDKNTDASQTLA----KEGAN--MAL----SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 13 ~G~~V~~~dr~~~~~~~l~----~~g~~--~~~----s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
.|.+|.+|+|+...-+.+. +.|++ .+. ++++.+++||+|+++++.+.- +. .+.+++|.+|+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~----i~-----~~~ikpGa~Vi 97 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK----VP-----TEWIKPGATVI 97 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc----cC-----HHHcCCCCEEE
Confidence 3668999999988766554 34543 344 788999999999999997532 22 23478999999
Q ss_pred EcCCCC
Q psy764 83 DSSTVD 88 (286)
Q Consensus 83 d~st~~ 88 (286)
|.+...
T Consensus 98 dvg~~~ 103 (140)
T cd05212 98 NCSPTK 103 (140)
T ss_pred EcCCCc
Confidence 987654
No 176
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.83 E-value=0.004 Score=53.31 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=60.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
|.+-|.||..+|.+|++--|...+ .+...+.|..+ .+++|+++.+|+|++-+||. .-.+|+.. .|.+.+++|+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe-~q~~vy~~--~I~p~Lk~G~aL 105 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDE-QQKEVYEK--EIAPNLKEGAAL 105 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchh-hHHHHHHH--HhhhhhcCCceE
Confidence 677899999999999887766554 56666778775 47999999999999999975 44666652 388888888865
Q ss_pred EEc
Q psy764 82 IDS 84 (286)
Q Consensus 82 id~ 84 (286)
.-.
T Consensus 106 ~Fa 108 (338)
T COG0059 106 GFA 108 (338)
T ss_pred Eec
Confidence 543
No 177
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.82 E-value=0.0015 Score=58.74 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=56.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc---c---CCHHHHhhcCcEEEEecCChhH-HHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM---A---LSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~ 73 (286)
+|...++.+.+.|.+|+++||++++.+.+... +..+ . .++.+.+.++|+||.|++.+.. ...++.. ....
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~--~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSN--SLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCH--HHHh
Confidence 67888999999999999999999988877654 3311 1 2356677899999999853211 1111111 1334
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.++++.+|||.+.
T Consensus 256 ~mk~g~vIvDva~ 268 (370)
T TIGR00518 256 QMKPGAVIVDVAI 268 (370)
T ss_pred cCCCCCEEEEEec
Confidence 4678899999874
No 178
>PLN00203 glutamyl-tRNA reductase
Probab=96.80 E-value=0.0027 Score=59.45 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--CCc----ccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--GAN----MALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..++++|...|. +|++|||+.++++.+.+. +.. ..++..+++.++|+||+|++.+.
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 78999999999996 699999999999888754 321 33567788899999999987543
No 179
>PRK04148 hypothetical protein; Provisional
Probab=96.80 E-value=0.011 Score=44.87 Aligned_cols=83 Identities=24% Similarity=0.180 Sum_probs=60.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-----ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-----MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|..+|..|.+.|++|++.|.++++++.+.+.+.. .++..-+.-+++|+|..+=|.++-.+.++. +......
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~----la~~~~~ 103 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE----LAKKINV 103 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH----HHHHcCC
Confidence 4568999999999999999999999888776642 334455677899999999997765566654 6655555
Q ss_pred CCEEEEcCCCCc
Q psy764 78 GVIVIDSSTVDP 89 (286)
Q Consensus 78 g~ivid~st~~p 89 (286)
.-+|.-.|+-.|
T Consensus 104 ~~~i~~l~~e~~ 115 (134)
T PRK04148 104 PLIIKPLSGEEP 115 (134)
T ss_pred CEEEEcCCCCCC
Confidence 555555555443
No 180
>PRK06046 alanine dehydrogenase; Validated
Probab=96.79 E-value=0.0033 Score=55.62 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=57.2
Q ss_pred ccHHHHHHHHhC-C-CcEEEEcCCchHHHHHHHc-----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-G-HDVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|...+..|... + .+|.+|||++++.+++.+. + +..+++.+++++ +|+|++|.|+. ..++. .
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---~P~~~-----~ 210 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---KPVVK-----A 210 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---CcEec-----H
Confidence 345566666532 3 3799999999988877643 4 345778999987 99999999974 24443 2
Q ss_pred ccCCCCCEEEEcCCCCch
Q psy764 73 KHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~ 90 (286)
+.+++|+.|...++..|.
T Consensus 211 ~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 211 EWIKEGTHINAIGADAPG 228 (326)
T ss_pred HHcCCCCEEEecCCCCCc
Confidence 346889998888877765
No 181
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.77 E-value=0.0025 Score=50.64 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=48.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..++++|.+.|.+|++.+|+. +++.+.+.++|+||.|++.+. ++.. +.++++.+|
T Consensus 56 ~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~~-----~~~~~~~vi 112 (168)
T cd01080 56 VGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVKG-----DMVKPGAVV 112 (168)
T ss_pred HHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eecH-----HHccCCeEE
Confidence 37789999999998999999874 356678899999999999863 3321 235668899
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 113 IDla~p 118 (168)
T cd01080 113 IDVGIN 118 (168)
T ss_pred EEccCC
Confidence 998754
No 182
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.76 E-value=0.003 Score=46.96 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|.-+.++|.++||+|+..|.+.+.+ .|...+.+++|.-...|++++++| ++.+.+++.+ +.. +..+.+|
T Consensus 15 ~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~---~~~-~g~~~v~ 84 (116)
T PF13380_consen 15 FGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE---AAA-LGVKAVW 84 (116)
T ss_dssp HHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH---HHH-HT-SEEE
T ss_pred hHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH---HHH-cCCCEEE
Confidence 35667888999999999998776533 378889999985489999999999 5677777764 322 3455677
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+ ...+++.+.+++.|++++.
T Consensus 85 ~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 85 LQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp E-TT----S--HHHHHHHHHTT-EEEE
T ss_pred EEcc----hHHHHHHHHHHHcCCEEEe
Confidence 7655 4455666777788888774
No 183
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.75 E-value=0.0086 Score=51.89 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=66.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C-----Cc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc-
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G-----AN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI- 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-----~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l- 71 (286)
+|++.+..|.+.|. +|+++||+.++++.+.+. + .. ..++..+.++++|+||-|.|..-. ..-. ..+
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~--~~~~--~~~~ 213 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMA--KHPG--LPLP 213 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCC--CCCC--CCCC
Confidence 47788999999997 799999999999888653 1 11 123455667889999999885311 1000 001
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+.++.+++|+.-..+. + .+.+..+++|+..++
T Consensus 214 ~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 214 AELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLD 248 (284)
T ss_pred HHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEec
Confidence 1236678899998765443 3 345556777877665
No 184
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=96.75 E-value=0.002 Score=58.51 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=83.0
Q ss_pred ccHHHHHHHHhCCCcEEEE------cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGHDVIVY------DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~------dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|.+.|.+|...|++|++- |.+....+.+.+.|..+ .++.|+++.||+|++.+|+. .-..+.. .+.+.+
T Consensus 47 qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~~---~i~p~L 121 (487)
T PRK05225 47 QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVVR---AVQPLM 121 (487)
T ss_pred HHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHHH---HHHhhC
Confidence 5888899999999999843 33344555566678766 67999999999999999986 4455554 488999
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEeccCCCCHHhh-----hcCceEEE-ec--C--CHhhHHHHHHHHHHh
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLDAPVSGGTKAA-----QEATLTFM-VG--G--DKSSLEKAKPILKCM 144 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~~a-----~~g~l~~~-~g--g--~~~~~~~~~~ll~~~ 144 (286)
++|.++.-.-.-..... ......++. ++-+|=..|+.-- ..|.-+++ +- - +..+.+.+..+-..+
T Consensus 122 K~Ga~L~fsHGFni~~~----~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~ala~a~~i 197 (487)
T PRK05225 122 KQGAALGYSHGFNIVEV----GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAAT 197 (487)
T ss_pred CCCCEEEecCCceeeeC----ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHHHHHHHHh
Confidence 99987764332221100 111122333 3345643333321 12332222 22 1 234677777787888
Q ss_pred cCC
Q psy764 145 GRN 147 (286)
Q Consensus 145 g~~ 147 (286)
|..
T Consensus 198 G~~ 200 (487)
T PRK05225 198 GGH 200 (487)
T ss_pred CCC
Confidence 764
No 185
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.72 E-value=0.0015 Score=59.92 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=55.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcc--cCCHHHHhhcCcEEEEecCChhHHH--HHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANM--ALSLSTLASGAEFIISMLPASQDVL--DAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adivi~~v~~~~~~~--~v~~~~~~l~~~l 75 (286)
||..+++.|...|. +|+++||++++.+.+.+. |... ..+..+.+.++|+||.|++.+..+- +.+.. ++...-
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~--~~~~~~ 270 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGKGMVER--ALKARR 270 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcHHHHHH--HHhhcc
Confidence 78889999999997 799999999998877654 4332 2456677889999999998764321 11110 000001
Q ss_pred CCCCEEEEcCC
Q psy764 76 KPGVIVIDSST 86 (286)
Q Consensus 76 ~~g~ivid~st 86 (286)
..+.+++|.+.
T Consensus 271 ~~~~vviDla~ 281 (423)
T PRK00045 271 HRPLLLVDLAV 281 (423)
T ss_pred CCCeEEEEeCC
Confidence 24578999863
No 186
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.68 E-value=0.0056 Score=48.13 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCc
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 89 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p 89 (286)
.++++.++++|+||++++.+.-++. ..+++|.+|||+++...
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~---------~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKA---------DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-G---------GGS-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccc---------ccccCCcEEEecCCccc
Confidence 4678889999999999997643221 24689999999987544
No 187
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.55 E-value=0.013 Score=55.83 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=48.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|+.+++.|.++|++|.++|.|+++++++.+.|..+. .| -.++ ++++|.++++++++.....+..
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~ 500 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVA 500 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHH
Confidence 6899999999999999999999999999988764321 11 1222 3589999999998765444443
No 188
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.51 E-value=0.0075 Score=51.89 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+.- +. ...+++|.+|
T Consensus 170 VGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~----i~-----~~~ik~gavV 226 (285)
T PRK14189 170 VGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV----LT-----ADMVKPGATV 226 (285)
T ss_pred cHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc----cC-----HHHcCCCCEE
Confidence 4666666666666666655422 24678889999999999997642 21 1357899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 227 IDVGin 232 (285)
T PRK14189 227 IDVGMN 232 (285)
T ss_pred EEcccc
Confidence 999864
No 189
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.51 E-value=0.0049 Score=54.81 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|++|||++++.+.+.+. + +..++++++++++||||++|.++.. -..++. .+.+++|..|.-.++..
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pvl~-----~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATILT-----DDMVEPGMHINAVGGDC 228 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCceec-----HHHcCCCcEEEecCCCC
Confidence 4899999999998877532 3 4457899999999999999998532 123333 13467898887777766
Q ss_pred chHHHHHHHHHHhcCCceEe
Q psy764 89 PQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~~ 108 (286)
|.. +++-..+-.+.-.|+|
T Consensus 229 p~~-~Eld~~~l~~a~v~vD 247 (346)
T PRK07589 229 PGK-TELHPDILRRARVFVE 247 (346)
T ss_pred CCc-ccCCHHHHhcCEEEEC
Confidence 653 3443333222224555
No 190
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.49 E-value=0.011 Score=50.40 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.+.+. ++++. ++|+++++.......++...+++.++++++|+|+.+.| |....+++. ..+..|+
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~~------~al~~G~ 85 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENLE------FALEHGK 85 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHHH------HHHHcCC
Confidence 788888888764 56655 57998876554433366677899999888999998877 445555543 2344565
Q ss_pred EEEEcCC-CCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 80 IVIDSST-VDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 80 ivid~st-~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
-++..+| .++....++.+ .. ++...+-+|.+.
T Consensus 86 ~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~s 118 (257)
T PRK00048 86 PLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNFS 118 (257)
T ss_pred CEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcch
Confidence 5544343 45666666665 33 455555445443
No 191
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.47 E-value=0.0094 Score=52.85 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=51.8
Q ss_pred cHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc-----CCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE-----GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|.+.+..|.. .+ .+|.+|||++++.+.+.+. |+. ..++++++++++|+|++|.|... .++.. .
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---p~i~~-----~ 215 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---PILKA-----E 215 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---cEecH-----H
Confidence 4455555653 34 5799999999999888652 443 46789999999999999998642 33321 2
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.+++|..|....+
T Consensus 216 ~l~~g~~v~~vg~ 228 (330)
T PRK08291 216 WLHPGLHVTAMGS 228 (330)
T ss_pred HcCCCceEEeeCC
Confidence 2567776665444
No 192
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.44 E-value=0.0081 Score=51.77 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|..|++.+++. .++.+.+++||+||.+++.+.-+.. ..+++|.+|
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~---------~~vk~gavV 226 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK---------DVVKEGAVI 226 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH---------HHcCCCcEE
Confidence 78888888888888888887642 3577889999999999997642211 236789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 227 IDvGi~ 232 (286)
T PRK14175 227 IDVGNT 232 (286)
T ss_pred EEcCCC
Confidence 998763
No 193
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.41 E-value=0.0033 Score=56.65 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=45.4
Q ss_pred CcEEEEcCCchHHHHHHHc------C---CcccCCHHHHhhcCcEEEEecCChh---HHHHHhcCCccccccCCCCCEEE
Q psy764 15 HDVIVYDKNTDASQTLAKE------G---ANMALSLSTLASGAEFIISMLPASQ---DVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~e~~~~adivi~~v~~~~---~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
.+|.+|||++++++.+.+. | +.+++|+++++++||||++|.+... ....++. ...+++|..|+
T Consensus 182 ~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~-----~~~lkpG~hv~ 256 (379)
T PRK06199 182 DTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK-----REWVKPGAFLL 256 (379)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec-----HHHcCCCcEEe
Confidence 3799999999998776531 2 4567899999999999999997532 1123332 23467887776
Q ss_pred E
Q psy764 83 D 83 (286)
Q Consensus 83 d 83 (286)
.
T Consensus 257 ~ 257 (379)
T PRK06199 257 M 257 (379)
T ss_pred c
Confidence 3
No 194
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.35 E-value=0.049 Score=44.84 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=62.4
Q ss_pred ccHHHHHHHHhCC---C-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQG---H-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..+...+ +.| + .+.+|||+.+++..+.+. +....+++.|.+++.|+++=|-. ++++++... +.|.
T Consensus 11 IG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~------~~L~ 82 (255)
T COG1712 11 IGKFLLELV-RDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVP------KILK 82 (255)
T ss_pred HHHHHHHHH-hcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhH------HHHh
Confidence 455555543 444 4 488999999999888654 66667889999999999999876 688888754 2344
Q ss_pred CCCEEEEcCCC--CchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTV--DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~--~p~~~~~~~~~~~~~g~~~~ 107 (286)
.|.-+|-+|+. .....++....+.+.+...+
T Consensus 83 ~g~d~iV~SVGALad~~l~erl~~lak~~~~rv 115 (255)
T COG1712 83 AGIDVIVMSVGALADEGLRERLRELAKCGGARV 115 (255)
T ss_pred cCCCEEEEechhccChHHHHHHHHHHhcCCcEE
Confidence 55544444543 32233333333444444433
No 195
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.31 E-value=0.019 Score=55.21 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=65.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. .| -.+. ++++|.++++++++..-..+.. ...
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~----~~r 486 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVE----LCQ 486 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHH----HHH
Confidence 6899999999999999999999999999988774332 11 1222 4689999999999876655554 222
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...|...|+-. +.++.. .+.+.+.|+..+-
T Consensus 487 ~~~p~~~IiaR-a~~~~~----~~~L~~~Ga~~vv 516 (601)
T PRK03659 487 QHFPHLHILAR-ARGRVE----AHELLQAGVTQFS 516 (601)
T ss_pred HHCCCCeEEEE-eCCHHH----HHHHHhCCCCEEE
Confidence 34444333322 222332 3455667877664
No 196
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.30 E-value=0.0098 Score=53.89 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=66.9
Q ss_pred ccHHHHHHHHhCC-C-cEEEEcCCchHHHHHHHc--C-------Cccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQG-H-DVIVYDKNTDASQTLAKE--G-------ANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~-~V~~~dr~~~~~~~l~~~--g-------~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+++.|++.+ + +|++.||+.++++++.+. + +.+. .++.++++++|+||-|+|.. .-..++.
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~-- 85 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVAR-- 85 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHH--
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHH--
Confidence 7899999999887 4 899999999999888652 1 1111 23567788999999999854 3344432
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTK 116 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~ 116 (286)
..+..|.-+||.|- ......++.+...+.|..++ .+....+..
T Consensus 86 ----~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 86 ----ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp ----HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred ----HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 23456778888322 24444555666666776655 333444433
No 197
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.30 E-value=0.01 Score=47.90 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=51.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc---CCccc--CC----HHHHhhcCcEEEEecCChhH-HHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE---GANMA--LS----LSTLASGAEFIISMLPASQD-VLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g~~~~--~s----~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l 71 (286)
+|.++|.-|.++|..|++.|.+.... +... +-..+ .+ +.+.+++|||||++++.+.- +.
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~--------- 142 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP--------- 142 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC---------
Confidence 79999999999999999997654221 1100 00111 12 67889999999999998643 11
Q ss_pred cccCCCCCEEEEcCCC
Q psy764 72 LKHAKPGVIVIDSSTV 87 (286)
Q Consensus 72 ~~~l~~g~ivid~st~ 87 (286)
.+.+++|.+|||.++.
T Consensus 143 ~d~ik~GavVIDVGi~ 158 (197)
T cd01079 143 TELLKDGAICINFASI 158 (197)
T ss_pred HHHcCCCcEEEEcCCC
Confidence 2346789999999865
No 198
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.25 E-value=0.0053 Score=56.19 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCc--ccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GAN--MALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..+++.|...| .+|++|||+.++.+.+.+. |.. ...++.+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 7889999999999 7899999999988777653 432 22456778889999999998654
No 199
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.21 E-value=0.011 Score=44.51 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=61.1
Q ss_pred ccHHHHHHHHh-CCCcE-EEEcCCch-H----HHHHH---HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQF-QGHDV-IVYDKNTD-A----SQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~-~G~~V-~~~dr~~~-~----~~~l~---~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+++.+.+ .|+++ .+++|+++ . +..+. ..|+.+.++++++.+.+|++|-.. .|+.+.+.+..
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~---- 86 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNLEY---- 86 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHhHHHHHH----
Confidence 89999999988 67774 45688872 1 11121 347888899999999999999887 46777766542
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccC
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPV 111 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv 111 (286)
.++.|..+|-.+|.....-.+..+.+.++ +.++-+|.
T Consensus 87 --~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~N 123 (124)
T PF01113_consen 87 --ALKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPN 123 (124)
T ss_dssp --HHHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SS
T ss_pred --HHhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCC
Confidence 23447777777776644333333334443 55555554
No 200
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.21 E-value=0.037 Score=40.74 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-C---CHHH----HhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-L---SLST----LASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~---s~~e----~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.+.+|.+.|+++++++.+.+.|..+. . ++.. -+++++.++++.+++..-..+.. ...
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~----~~r 84 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIAL----LAR 84 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHHH----HHH
Confidence 5788999999977799999999999999998875332 1 1211 14689999999998654444433 223
Q ss_pred cCCC-CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKP-GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~-g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+.+ .++++-..+ + +..+.+...|+..+=
T Consensus 85 ~~~~~~~ii~~~~~--~----~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 85 ELNPDIRIIARVND--P----ENAELLRQAGADHVI 114 (116)
T ss_dssp HHTTTSEEEEEESS--H----HHHHHHHHTT-SEEE
T ss_pred HHCCCCeEEEEECC--H----HHHHHHHHCCcCEEE
Confidence 3334 345553332 2 224445556765543
No 201
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.21 E-value=0.027 Score=54.36 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=67.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++++.|.|+++++.+++.|..+. .| -.+. ++++|.+++++++++.-..+.. ...
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~----~ar 486 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVE----LVK 486 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHH----HHH
Confidence 6899999999999999999999999999988775332 11 1222 3589999999998766555544 222
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
...|. ++++-+ .++ +-...+.+.|+.++.-+...+
T Consensus 487 ~~~p~~~iiaRa--~d~----~~~~~L~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 487 EHFPHLQIIARA--RDV----DHYIRLRQAGVEKPERETFEG 522 (621)
T ss_pred HhCCCCeEEEEE--CCH----HHHHHHHHCCCCEEehhhHhH
Confidence 23344 344422 222 224456677888776444433
No 202
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=96.20 E-value=0.053 Score=41.51 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=64.3
Q ss_pred HHHHHHhCCCcEEEEcCCchH----HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDKNTDA----SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.+..|.+.||+|++=.-.-+. =+...+.|+.+.++..|+..+||+|+-.=+ +. .+ -.+.+++|+++
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~-p~-~~--------e~~~l~~g~~l 88 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKP-PS-EE--------ELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----GG--------GGGGS-TTCEE
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECC-CC-HH--------HHhhcCCCcEE
Confidence 467889999999875322111 144567899999999999999998776444 42 11 23457899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
+-.. .|....++.+.+.++++..++.-....
T Consensus 89 i~~~--~~~~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFL--HPAQNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEee--ccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9544 444567777888889988887644433
No 203
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.20 E-value=0.016 Score=49.83 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.+.|..|++.++. +.++++.++++|+||.+++.+.-+.. ..+++|.+|
T Consensus 171 VG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~---------~~vk~gavV 227 (285)
T PRK10792 171 VGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG---------EWIKPGAIV 227 (285)
T ss_pred cHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH---------HHcCCCcEE
Confidence 5666666666666666666543 24688899999999999976653222 346789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 228 IDvGin 233 (285)
T PRK10792 228 IDVGIN 233 (285)
T ss_pred EEcccc
Confidence 998754
No 204
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.18 E-value=0.01 Score=51.77 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH---HHHHhcC-----CccccccCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD---VLDAYDG-----SDGILKHAK 76 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~---~~~v~~~-----~~~l~~~l~ 76 (286)
-+++.|.+.|++|.++.-+.+.. ...|+..+++.+++++++|+|++.+|.... ++..+.. ....++.++
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 47889999999999876543211 234888888899999999999999884321 1222110 112455678
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
++++++ .+...|... +.+.++|+.+++.+
T Consensus 93 ~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~ 121 (296)
T PRK08306 93 EHCTIF-SGIANPYLK----ELAKETNRKLVELF 121 (296)
T ss_pred CCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence 887555 355555532 44568888887644
No 205
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.17 E-value=0.047 Score=48.34 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=66.6
Q ss_pred HHHHHHhCCC---cEEEEcCCchHHHHHHHc-CC-cccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 6 KLFFLQFQGH---DVIVYDKNTDASQTLAKE-GA-NMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 6 lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
.+..+.+.+. -|.++|+++++++.+.+. |+ ..++|+++++++ .|+|++|+|+....+.++. ++..|
T Consensus 19 ~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~-------AL~aG 91 (342)
T COG0673 19 HLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALA-------ALEAG 91 (342)
T ss_pred hHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHH-------HHhcC
Confidence 4445666553 366779999999888765 76 478899999976 5899999998766665543 35566
Q ss_pred CEEE-Ec-CCCCchHHHHHHHHHHhcCCceE
Q psy764 79 VIVI-DS-STVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 79 ~ivi-d~-st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+-|+ +. =+.++.+++++.+..++.|..+.
T Consensus 92 khVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 92 KHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 6444 42 24567777888888777765544
No 206
>KOG3007|consensus
Probab=96.05 E-value=0.0091 Score=50.17 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred CcEEEEcCCchHHHHHHHc----------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEc
Q psy764 15 HDVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS 84 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~ 84 (286)
.+|.+|||+++.++.+++. -+..+.+..+++..+|||+.|.++ .+.++++ ..++||+ .||.
T Consensus 165 reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls---tePilfg-----ewlkpgt-hIdl 235 (333)
T KOG3007|consen 165 REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS---TEPILFG-----EWLKPGT-HIDL 235 (333)
T ss_pred eEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---CCceeee-----eeecCCc-eEee
Confidence 3799999999988887662 256678899999999999999985 3555542 4567774 5554
Q ss_pred CCCCchHHHHHHHHHHhcCCceEe
Q psy764 85 STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 85 st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
=........+.-+.+-+.+..|+|
T Consensus 236 VGsf~p~mhEcDdelIq~a~vfVD 259 (333)
T KOG3007|consen 236 VGSFKPVMHECDDELIQSACVFVD 259 (333)
T ss_pred eccCCchHHHHhHHHhhhheEEEe
Confidence 444444466777777777888888
No 207
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.05 E-value=0.011 Score=53.47 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CC--cccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GA--NMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~--~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||.-.|++|.++| .+|++.||+.++++++++. |+ ...+.+.+.+.++|+||+|...|.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 7888999999999 5899999999999999765 63 334566778899999999987553
No 208
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.03 E-value=0.07 Score=49.57 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHccC-CCcccccccCCC----CCccccCCCCCCC
Q psy764 157 GQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTSS-GRCWSSEVYNPV----PGVLSNVPASNNY 225 (286)
Q Consensus 157 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~----~~~~~~~~~~~~~ 225 (286)
++.+|.++|.+.+..+.+++|.+.+.++ .++|..++.++-+.+. -+||+++..... |++ .+.+ +
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l-~~l~----~ 386 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDL-ANLL----L 386 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCCh-hhhc----C
Confidence 7899999999999999999999999987 7899999999988773 566665442221 110 0000 1
Q ss_pred CCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 226 NGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 226 ~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
++.|. +......++.+...+-+.|+|.|.+.++..+|.....
T Consensus 387 ~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s 430 (467)
T TIGR00873 387 APYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRT 430 (467)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 22222 2334556688999999999999999999998887655
No 209
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.98 E-value=0.03 Score=49.05 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHH----HHc--------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTL----AKE--------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+.+|..|+.+|+ +|.++|++++..+.. .+. .++.+.+.++ +++||+||++++.|
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 89999999999887 899999976654311 111 1334567776 68999999999854
No 210
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.95 E-value=0.022 Score=49.35 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++++.++++||||.++..+. .+. .+.+++|.+|
T Consensus 179 VGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~----~i~-----~~~vk~gavV 235 (299)
T PLN02516 179 VGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAM----MIK-----GDWIKPGAAV 235 (299)
T ss_pred chHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcC----ccC-----HHHcCCCCEE
Confidence 4555555555555555555321 2467889999999999998753 211 2347899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 236 IDvGin 241 (299)
T PLN02516 236 IDVGTN 241 (299)
T ss_pred EEeecc
Confidence 998764
No 211
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.88 E-value=0.013 Score=46.91 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~~ 57 (286)
+|..+++.|.+.||+|++..|++++.+. ..++++ .++..++++++|+||.+++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 6899999999999999999999998876 333221 12456777899999999974
No 212
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.027 Score=48.42 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++++..++||+||++++-+.-+. .+.+++|.+|
T Consensus 171 VGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~---------~~~ik~gavV 227 (284)
T PRK14177 171 LGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK---------ADWISEGAVL 227 (284)
T ss_pred chHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC---------HHHcCCCCEE
Confidence 4455555555444455544421 2457788999999999999764322 2346799999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
||.++..
T Consensus 228 IDvGin~ 234 (284)
T PRK14177 228 LDAGYNP 234 (284)
T ss_pred EEecCcc
Confidence 9998643
No 213
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.88 E-value=0.027 Score=48.43 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.++++.+++|||||++++.+.-+. .+.+++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~---------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVK---------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCcc
Confidence 457888999999999999764321 23467899999998653
No 214
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.87 E-value=0.026 Score=48.91 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||++++-+.-+. ...+++|.+|||.++.
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin 232 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIG---------AEMVKPGAVVVDVGIH 232 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 467888999999999999764221 2347799999998764
No 215
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.86 E-value=0.025 Score=48.70 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++.+.-+. .+.+++|.+|||.++.
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDVGin 229 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLIT---------PEMVRPGAVVVDVGIN 229 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCc
Confidence 467888999999999999764321 2346799999998764
No 216
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.86 E-value=0.025 Score=48.61 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. ...+++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDvGin 231 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLR---------SDMVKEGVIVVDVGIN 231 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCCEEEEeccc
Confidence 457888999999999999765322 1246789999998754
No 217
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=95.86 E-value=0.21 Score=41.01 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCC
Q psy764 34 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVS 112 (286)
Q Consensus 34 g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~ 112 (286)
|+.++++-+|+++++|+|++=+|....-..++.. +...+++|.+|.+.+|+......++-+.+.+....+-+ .|
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikk---fiddipegaivthactipttkf~kifed~gredlnvtsyhp-- 200 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKK---FIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHP-- 200 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHH---HHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCC--
Confidence 5778888899999999999999965433334432 45568899999999998776666665554443332211 11
Q ss_pred CCHHhhhcCceEEEecC--CHhhHHHHHHHHH
Q psy764 113 GGTKAAQEATLTFMVGG--DKSSLEKAKPILK 142 (286)
Q Consensus 113 g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~ 142 (286)
| ....-+|+ +.++.| ++++++.+-++=+
T Consensus 201 g-~vpemkgq-vyiaegyaseeavn~lyelg~ 230 (343)
T COG4074 201 G-TVPEMKGQ-VYIAEGYASEEAVNALYELGE 230 (343)
T ss_pred C-CCccccCc-EEEecccccHHHHHHHHHHHH
Confidence 1 11123566 455555 4565555444433
No 218
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.80 E-value=0.014 Score=53.27 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C-Cc--ccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G-AN--MALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||...+.+|.+.|. +++++||+.++++.+.+. + .. ..+++.+.+.++|+||.|++.|.-
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 68899999999995 799999999999888764 3 22 235567778899999999987643
No 219
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.77 E-value=0.031 Score=47.95 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin 232 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFID---------EEYVKEGAIVIDVGTS 232 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCcEEEEeecc
Confidence 467888999999999999764321 2346799999998643
No 220
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=95.76 E-value=0.045 Score=50.63 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHhcC--CeEecCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHc
Q psy764 132 SSLEKAKPILKCMGR--NIVHCGDSGN-----GQVAKLCNNMLLGVTMMGVAEAMNLGVK----L--GMNAKLLSDVINT 198 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~--~v~~~g~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~----~--Gl~~~~~~~~~~~ 198 (286)
+++.+..+.++.... ...+.|+.+. ++.+|.++|.+.+..+.+++|.+.+.++ + ++|..++.++-+.
T Consensus 272 AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~ 351 (459)
T PRK09287 272 AVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351 (459)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Confidence 344555555544321 1234565443 8899999999999999999999999987 4 5788999998887
Q ss_pred cC-CCcccccccCCC----CCccccCCCCCCCCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 199 SS-GRCWSSEVYNPV----PGVLSNVPASNNYNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 199 ~~-~~s~~~~~~~~~----~~~~~~~~~~~~~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+. -+||+++..... |++ .+.+ +++.|. +......++.+...+-+.|+|.|.+.++...|+.-..
T Consensus 352 GcIIRs~lL~~i~~a~~~~~~l-~nl~----~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~ 422 (459)
T PRK09287 352 GCIIRAQFLQKITDAYEANPDL-ANLL----LDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRT 422 (459)
T ss_pred CCEEeHHHHHHHHHHHHhCCCc-hhhc----CCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 63 566665442221 110 0000 122222 2333455688999999999999999999977765543
No 221
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.74 E-value=0.048 Score=47.16 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|..+-.+|...|++ .+|..++.+ .++ -.|.....|+.|+-+. .|+.++++|. ..+.+++.+ ... ..-+
T Consensus 18 ~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~e---~~~-~Gvk 89 (286)
T TIGR01019 18 QGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIFE---AID-AGIE 89 (286)
T ss_pred HHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHHH---HHH-CCCC
Confidence 467777888888998 667666652 111 1488999999999886 7999999995 566666553 222 1122
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..||-.+.......+++.+..+++|++++-
T Consensus 90 ~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 90 LIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 344444444333346777888888888773
No 222
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.72 E-value=0.026 Score=48.56 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++.+.+++||+||.+++.+.- +. .+.+++|.+|
T Consensus 170 VG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~----i~-----~~~ik~gavV 226 (284)
T PRK14190 170 VGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKL----IT-----ADMVKEGAVV 226 (284)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCc----CC-----HHHcCCCCEE
Confidence 4555555555555555555321 23577889999999999987642 21 2346799999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 227 IDvGi~ 232 (284)
T PRK14190 227 IDVGVN 232 (284)
T ss_pred EEeecc
Confidence 998754
No 223
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.71 E-value=0.032 Score=47.99 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++||+||++++.+.-+. ...+++|.+|||.+..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~i~---------~~~ik~GavVIDvGin 234 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHLVT---------ADMVKPGAAVLDVGVS 234 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCccC---------HHHcCCCCEEEEcccc
Confidence 468889999999999999764211 2347899999998764
No 224
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.70 E-value=0.032 Score=47.95 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. .+.+++|.+|||.+..
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~---------~~~vk~GavVIDvGin 230 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIG---------ADAVKPGAVVIDVGIS 230 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCcEEEEeecc
Confidence 457888999999999999765322 2347799999998764
No 225
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.69 E-value=0.044 Score=47.51 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhCCCcEEEE--cCC--chHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGHDVIVY--DKN--TDASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~--dr~--~~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|..+.++|.+.||+ .+| |+. .+.+ .|.....|++|+-+. .|+.++++|. ..+.+++.+ ..+ .
T Consensus 20 ~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~e---~~~-~ 88 (291)
T PRK05678 20 QGTFHTEQMLAYGTN-IVGGVTPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPP-PFAADAILE---AID-A 88 (291)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHHH---HHH-C
Confidence 477788899998997 554 544 2221 488999999999987 8999999995 456665543 222 1
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
.-+..+|-.+.......+++.+...++|++++- |..
T Consensus 89 gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG-PNc 124 (291)
T PRK05678 89 GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG-PNC 124 (291)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CCC
Confidence 122344544444443345788888888888773 443
No 226
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.032 Score=48.18 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. ...+++|.+|||.++.
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gaiVIDVGin 234 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVK---------YSWIKKGAIVIDVGIN 234 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 457888999999999999875322 2346789999998754
No 227
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.031 Score=48.01 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..++||+||++++.+.-+. ...+++|.+|||.++.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin 232 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFIT---------ADMVKEGAVVIDVGIN 232 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCC---------HHHcCCCcEEEEeccc
Confidence 467788999999999999764322 2346789999998753
No 228
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.64 E-value=0.086 Score=46.33 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=52.2
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCc-hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNT-DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||...+..+.+. +.++. +|||++ ++.. ...+.....+..++..+.|+|++|.|+....+.+. +.+..|
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-------~~L~aG 84 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-------PYFAQF 84 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH-------HHHHcC
Confidence 688888888765 67766 579985 4332 22344555677777789999999999866554443 335678
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.-+|++..
T Consensus 85 ~NVV~s~~ 92 (324)
T TIGR01921 85 ANTVDSFD 92 (324)
T ss_pred CCEEECCC
Confidence 88887653
No 229
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.60 E-value=0.028 Score=48.20 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCcEEEEcCCchHHHH----HHHcCCcc------cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEE
Q psy764 14 GHDVIVYDKNTDASQT----LAKEGANM------ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 83 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~----l~~~g~~~------~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid 83 (286)
|.+|.+.+|+...-.. +...|+++ +.++.+.+++||+||.+++.+.- +. ...+++|.+|||
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l----v~-----~~~vk~GavVID 222 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF----IT-----PDMVKPGATVID 222 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc----cC-----HHHcCCCcEEEE
Confidence 4466666666443333 12234322 23578889999999999985422 21 123689999999
Q ss_pred cCCC
Q psy764 84 SSTV 87 (286)
Q Consensus 84 ~st~ 87 (286)
.+..
T Consensus 223 Vgi~ 226 (279)
T PRK14178 223 VGIN 226 (279)
T ss_pred eecc
Confidence 8754
No 230
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.56 E-value=0.051 Score=47.04 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=62.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C----CcccC---CHHHHhhcCcEEEEecCChhHHHH-HhcCC-cc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G----ANMAL---SLSTLASGAEFIISMLPASQDVLD-AYDGS-DG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g----~~~~~---s~~e~~~~adivi~~v~~~~~~~~-v~~~~-~~ 70 (286)
+|++++..|.+.|. +|+++||++++++.+.+. + +.... +..+...++|+||-|+|....... .+... ..
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~ 215 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPF 215 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhh
Confidence 46788899999997 699999999999888653 1 11122 223455789999999986432111 00000 00
Q ss_pred c-cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 71 I-LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 71 l-~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+ .....++.+++|+--. |..+ .+.+..++.|+..++
T Consensus 216 ~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 216 LLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVIS 252 (282)
T ss_pred hccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEEC
Confidence 0 0123456788998643 4333 234445567766554
No 231
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.54 E-value=0.037 Score=47.65 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.+.|..|++.+. .+.++.+.++++|+||.++.-|.-+. ...+++|.+|
T Consensus 176 VGkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvv~AvG~p~~i~---------~~~vk~gavV 232 (287)
T PRK14176 176 VGKPMAAMLLNRNATVSVCHV--------------FTDDLKKYTLDADILVVATGVKHLIK---------ADMVKEGAVI 232 (287)
T ss_pred cHHHHHHHHHHCCCEEEEEec--------------cCCCHHHHHhhCCEEEEccCCccccC---------HHHcCCCcEE
Confidence 455555555555555555542 12467888999999999998764221 1246789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 233 IDvGin 238 (287)
T PRK14176 233 FDVGIT 238 (287)
T ss_pred EEeccc
Confidence 998764
No 232
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.53 E-value=0.076 Score=53.71 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=68.1
Q ss_pred ccHHHHHHHHhCC-Cc-------------EEEEcCCchHHHHHHHc--C---Ccc-cCCHHHHh---hcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG-HD-------------VIVYDKNTDASQTLAKE--G---ANM-ALSLSTLA---SGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~-------------V~~~dr~~~~~~~l~~~--g---~~~-~~s~~e~~---~~adivi~~v~~~ 58 (286)
||...+..|++.. ++ |.+.|+++++++.+.+. + +.. ..+.+++. +++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 7889999998753 33 88999999998887653 3 233 44555554 6899999999975
Q ss_pred hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 59 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 59 ~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
-. ..+. ..++..|+-+++.| ......+++.+..++.|+.++-
T Consensus 660 ~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 660 CH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 33 2222 23456677777776 4455667777888888876653
No 233
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.51 E-value=0.044 Score=47.08 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. .+.+++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~---------~~~ik~gaiVIDvGin 231 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVK---------GAWVKEGAVVIDVGMN 231 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEeece
Confidence 457788999999999999754221 2346799999998754
No 234
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.48 E-value=0.13 Score=44.04 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=65.3
Q ss_pred ccHHHHHHHHh-CCCcEE-EEcCC-chH----HHHHHH---cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQF-QGHDVI-VYDKN-TDA----SQTLAK---EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~-~G~~V~-~~dr~-~~~----~~~l~~---~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||..+++.+.+ .++++. ++||. +++ ...+.. .|+.++++++++...+|+||.|.+. ....+++.
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~~~~~~~----- 86 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EGVLNHLK----- 86 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HHHHHHHH-----
Confidence 78889998875 467654 56854 322 112211 3566778888886679999999974 55555543
Q ss_pred cccCCCCCE-EEEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 72 LKHAKPGVI-VIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 72 ~~~l~~g~i-vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
..+..|+- |+-++..++...+++.+..++.|+.++-+|.+
T Consensus 87 -~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 87 -FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred -HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 23455654 44555556667777777766666666655544
No 235
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.48 E-value=0.043 Score=48.34 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..++|||||.+++-+.-+. .+.+++|.+|||.+..
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~---------~d~vk~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVR---------GSWLKPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEcccc
Confidence 467888999999999999764322 2346799999998764
No 236
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.46 E-value=0.045 Score=47.20 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||+++.-+.-+. ...+++|.+|||++..
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~---------~~~vk~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLT---------AEYFNPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccC---------HHHcCCCCEEEEeecc
Confidence 457888999999999999764222 2346799999998753
No 237
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.45 E-value=0.044 Score=47.05 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++||+||+++..+.-+. .+.+++|.+|||.++.
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~---------~~~vk~gavvIDvGin 231 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLIT---------EDMVKEGAIVIDIGIN 231 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccC---------HHHcCCCcEEEEeecc
Confidence 357788999999999999764322 2346789999998764
No 238
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.43 E-value=0.03 Score=48.19 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|.-|.++|..|++.+.. +.++.+.+++||+||++++.+.-+. ...+++|.+|
T Consensus 169 VG~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~i~---------~~~vk~GavV 225 (285)
T PRK14191 169 VGKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDLIK---------ASMVKKGAVV 225 (285)
T ss_pred hHHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCcCC---------HHHcCCCcEE
Confidence 4555555555555555554321 1235678899999999998764321 1246799999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 226 IDvGi~ 231 (285)
T PRK14191 226 VDIGIN 231 (285)
T ss_pred EEeecc
Confidence 998754
No 239
>KOG2741|consensus
Probab=95.37 E-value=0.15 Score=44.79 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=67.9
Q ss_pred CCCcEE-EEcCCchHHHHHHHc-C---CcccCCHHHHhhcC--cEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc
Q psy764 13 QGHDVI-VYDKNTDASQTLAKE-G---ANMALSLSTLASGA--EFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS 84 (286)
Q Consensus 13 ~G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~a--divi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~ 84 (286)
++|.|. +.+|+.+++..+++. + .++.+|.+|++++. |+|.+..|+++..+-+.. + +..|| ++++.
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~---l~~~K~VL~EK 103 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----A---LNKGKHVLCEK 103 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----H---HHcCCcEEecc
Confidence 467654 569999999999765 4 47889999999865 999999999988777764 2 22333 55553
Q ss_pred -CCCCchHHHHHHHHHHhcCCceEec
Q psy764 85 -STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 85 -st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
-.....+.+++.+.++.+|+.++++
T Consensus 104 Pla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 104 PLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred cccCCHHHHHHHHHHHHHcCcEEEee
Confidence 2456778888999999999888875
No 240
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.36 E-value=0.048 Score=48.29 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||.+++-+.-+. .+.+++|.+|||.+..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~---------~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVR---------GSWIKPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCC---------HHHcCCCCEEEecccc
Confidence 467888999999999999764322 2346799999998753
No 241
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.31 E-value=0.13 Score=43.02 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH--cCCcc---cC----CHHHH-hhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK--EGANM---AL----SLSTL-ASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g~~~---~~----s~~e~-~~~adivi~~v~~~~~~~~v~ 65 (286)
+|..+|+.|.+.||+|.+.|++++++++..+ ....+ .. .++++ +.++|+++.+..++ .+..++
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~N~i~ 83 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EVNSVL 83 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HHHHHH
Confidence 7999999999999999999999999988544 33211 11 23344 56899999988864 444444
No 242
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.28 E-value=0.064 Score=49.58 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-cCCccc-------CCHHHH-hhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-EGANMA-------LSLSTL-ASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~~-------~s~~e~-~~~adivi~~v~~~~ 59 (286)
+|..++..|.+.|++|.++|+++++.+.+.+ .|..+. ..+.++ ++++|.||++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 6899999999999999999999999988865 443221 123344 678999999999754
No 243
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.27 E-value=0.02 Score=42.87 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred ccHHHHHHHHhCCC-c-EEEEcCCchHHHHHHHc--------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGH-D-VIVYDKNTDASQTLAKE--------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|+.+.+.|.++-+ + +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|+. ...+....
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~~~~~~~---- 85 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-ASKELAPK---- 85 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HHHHHHHH----
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HHHHHHHH----
Confidence 68899999988543 4 55566665332223222 1233333344558999999999964 45555432
Q ss_pred cccCCCCCEEEEcCCCC
Q psy764 72 LKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~ 88 (286)
.+.+|..|||.|+..
T Consensus 86 --~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 86 --LLKAGIKVIDLSGDF 100 (121)
T ss_dssp --HHHTTSEEEESSSTT
T ss_pred --HhhCCcEEEeCCHHH
Confidence 256788999998754
No 244
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.22 E-value=0.033 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=36.8
Q ss_pred HhCCCcEEEEcCCchHHHHHHHc------------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 11 QFQGHDVIVYDKNTDASQTLAKE------------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 11 ~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
..+|++|.+||+++++.+..... .+..+.++.+++++||+||.+++.
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 45578999999999887655331 234577889999999999999984
No 245
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.19 E-value=0.063 Score=50.14 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=54.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-cCC--------------------------HHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-ALS--------------------------LSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s--------------------------~~e~~~~adivi~~ 54 (286)
+|...+..+...|..|+++|+++++.+.+...|... .-+ ..+.++++|+||.|
T Consensus 175 iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~T 254 (511)
T TIGR00561 175 AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITT 254 (511)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 466777777788989999999999988887777554 111 33456789999999
Q ss_pred c-----CChh-HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 55 L-----PASQ-DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 55 v-----~~~~-~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
+ |.|. ..++ ..+.+++|.+|||.+.
T Consensus 255 alipG~~aP~Lit~e-------mv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 255 ALIPGKPAPKLITEE-------MVDSMKAGSVIVDLAA 285 (511)
T ss_pred cccCCCCCCeeehHH-------HHhhCCCCCEEEEeee
Confidence 9 4331 1122 3445788999999875
No 246
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=95.16 E-value=0.054 Score=37.78 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..++..|.+. +.+|.+||| |++|.|++.+..+.+- ....+.++.+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------~~~~~~~~~~ 81 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ATAKINEGAV 81 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------HHHhcCCCCE
Confidence 577888888887 568999988 9999999866544331 1223567889
Q ss_pred EEEcC
Q psy764 81 VIDSS 85 (286)
Q Consensus 81 vid~s 85 (286)
|+|++
T Consensus 82 v~~~a 86 (86)
T cd05191 82 VIDLA 86 (86)
T ss_pred EEecC
Confidence 99874
No 247
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.11 E-value=0.062 Score=46.32 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~---------~~~ik~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIK---------EEMIAEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 468888999999999999764221 2347799999998754
No 248
>KOG0068|consensus
Probab=95.09 E-value=0.12 Score=45.06 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+-.|.++..-|..|..||. .+. +...+.|++.. +.+|+...||+|-+-+|-..+.+.++.. ..+..+++|..
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~--~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~--~tfA~mKkGVr 231 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPM--ALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLND--ETFAKMKKGVR 231 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCch--HHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCH--HHHHHhhCCcE
Confidence 899999999988989999974 443 34455677764 7999999999999999987788888875 34566899999
Q ss_pred EEEcCCCCchHHHHHHHHHHh
Q psy764 81 VIDSSTVDPQVPQTLSNLARE 101 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~ 101 (286)
||++|-...-....+.+.+..
T Consensus 232 iIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEecCCceechHHHHHHHhc
Confidence 999998777666676666544
No 249
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.072 Score=46.17 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||+++.-+.-+. .+.+++|.+|||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVK---------PEWIKPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEecCCC
Confidence 357888999999999998764211 2347799999998754
No 250
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.95 E-value=0.12 Score=47.89 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+.++|.+.|| +|+..|.+.+. -.|..+..+++|+-...|++++++|. +.+.+++.+ ..+ ..-..
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~e---~~~-~gv~~ 91 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVEE---CGE-KGVKG 91 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHHH---HHh-cCCCE
Confidence 57788899999998 57666665432 14889999999998889999999995 566666653 322 22234
Q ss_pred EEEEcCCCCc------hHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDP------QVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p------~~~~~~~~~~~~~g~~~~~ 108 (286)
+||-.+.... ...+++.+..++.|++++.
T Consensus 92 ~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 92 AVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred EEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 4443332221 1224566667777766553
No 251
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.93 E-value=0.11 Score=45.24 Aligned_cols=102 Identities=9% Similarity=0.094 Sum_probs=60.9
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCc---hHHHHHHHc----C--Ccc--c--C---CHHHHhhcCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNT---DASQTLAKE----G--ANM--A--L---SLSTLASGAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~---~~~~~l~~~----g--~~~--~--~---s~~e~~~~adivi~~v~~~~~~~~v 64 (286)
+|.+++..|++.|.+ |+++||++ ++.+.+.+. + ... . + +..+.++.+|+||-|.|-.-. .-
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~--~~ 214 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMK--PN 214 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCC--CC
Confidence 478889999999986 99999997 666665431 1 111 1 1 223345678999999984321 00
Q ss_pred hcCCccc--cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 65 YDGSDGI--LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 65 ~~~~~~l--~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
... ..+ ...+.++.+|+|+--.... + .+.+..++.|+..++
T Consensus 215 ~~~-~~~~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 215 DGE-TNIKDTSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVG 257 (289)
T ss_pred CCC-CCCCcHHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeC
Confidence 000 001 1236678899998654433 3 334555677776665
No 252
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.93 E-value=0.084 Score=46.23 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=38.8
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHH----Hc----C--Cc--ccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLA----KE----G--AN--MALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~~----g--~~--~~~s~~e~~~~adivi~~v~ 56 (286)
||..+|..++..|+ +|.++|+++++.+... .. + .+ .+.+. +.+++||+||+++.
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 79999999998876 9999999887653322 11 1 12 23455 55789999999974
No 253
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.84 E-value=0.17 Score=43.34 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCC--chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKN--TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..+++.+.+. +.++ .++++. .++.......+...+++++++..+.|+|+.|.|.+ ...++.. ..+..
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~------~aL~a 84 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVV------PILKA 84 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHH------HHHHc
Confidence 788888888765 4454 344443 33333322336777888988855699999999964 5555432 33556
Q ss_pred CCEEEEcCCC---CchHHHHHHHHHHhcCCc-eEeccCCCCHH
Q psy764 78 GVIVIDSSTV---DPQVPQTLSNLAREKQIT-FLDAPVSGGTK 116 (286)
Q Consensus 78 g~ivid~st~---~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~ 116 (286)
|+-++..|+. .+....++.+..++.|.. |++....|+..
T Consensus 85 Gk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 85 GIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred CCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 7766655554 344556777777777754 44443444433
No 254
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.84 E-value=0.16 Score=42.47 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCC----chHH-------HHHHHc-CC-cccCCHHHHhhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKN----TDAS-------QTLAKE-GA-NMALSLSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
+|.+++..|.+.|. +|+++||+ .++. +.+.+. +. ....++.++++++|++|-+.|..-..+++
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~- 114 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEM- 114 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHH-
Confidence 57889999999996 59999999 4543 333322 11 11136778888999999998732111222
Q ss_pred cCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 66 ~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
.+.+.++.+|.+.++-.+ ..+.+...+.|.. +.+
T Consensus 115 ------l~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~ 149 (226)
T cd05311 115 ------IKKMAKDPIVFALANPVP---EIWPEEAKEAGADIVAT 149 (226)
T ss_pred ------HHhhCCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEe
Confidence 233456778888884333 2244444555664 443
No 255
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=94.77 E-value=0.08 Score=45.31 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.1
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCchHHHHHHH-----------cCCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTDASQTLAK-----------EGANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~adivi~~v 55 (286)
||..++..|+..| .+|.++|+++++.+.... ..+..++++.+++++||+||++.
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 6889999999888 689999999876543322 12334566788999999999965
No 256
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.76 E-value=0.09 Score=45.47 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin 235 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVK---------ADMVKEGAVVIDVGTT 235 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecCc
Confidence 467888999999999999765322 2346799999998764
No 257
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=94.76 E-value=0.47 Score=36.03 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=47.8
Q ss_pred EEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Q psy764 124 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV---AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL----LSDVI 196 (286)
Q Consensus 124 ~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~---~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~----~~~~~ 196 (286)
++.+.||++..+.++.+++.+|.+++.+.+.....+ .=+++|+... .+..+..+.++.|+|.+. +..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~----L~~~a~~ll~~~gi~~~~a~~~L~PLi 78 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVA----LYALAAELLEQAGIDFEEALEALLPLI 78 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTT-SHHH--HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHH----HHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 456667999999999999999999999875322221 2256777655 455677889999999954 55555
Q ss_pred Hc
Q psy764 197 NT 198 (286)
Q Consensus 197 ~~ 198 (286)
..
T Consensus 79 ~~ 80 (132)
T PF10728_consen 79 RE 80 (132)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 258
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.71 E-value=0.055 Score=47.43 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHc--------C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKE--------G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|+++|..|+..| ++|.++||++++++.+... + ........+.+++||+||++...+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 7899999999999 6899999999887655431 1 122223334578999999999764
No 259
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.66 E-value=0.14 Score=44.26 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=63.5
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc----CCc-ccCCHHHH--hhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE----GAN-MALSLSTL--ASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~----g~~-~~~s~~e~--~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+.+.+..|++.|. +|+++||+.++++++.+. +.. ......+. ..++|+||=|+|-.-.-.. -...-. ...
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~-~~~~~~-~~~ 215 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE-GDSPVP-AEL 215 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC-CCCCCc-HHh
Confidence 4677888999995 799999999999888764 211 11222222 2268999999986533221 000000 234
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+.++.++.|+--.... + .+.++.+++|...+|
T Consensus 216 l~~~~~v~D~vY~P~~-T-plL~~A~~~G~~~id 247 (283)
T COG0169 216 LPKGAIVYDVVYNPLE-T-PLLREARAQGAKTID 247 (283)
T ss_pred cCcCCEEEEeccCCCC-C-HHHHHHHHcCCeEEC
Confidence 6788999998554433 3 334566777877666
No 260
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.63 E-value=0.19 Score=46.74 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHc----------------------CCcccCCHHHHhhcCcEEEEecCChhHH
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKE----------------------GANMALSLSTLASGAEFIISMLPASQDV 61 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s~~e~~~~adivi~~v~~~~~~ 61 (286)
..++..|.+.|.+|.+||.--+..+.-... ++..++++.++++++|+||+++.++ ..
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~-ef 425 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWD-EF 425 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCCh-Hh
Confidence 467888999999999999764332111011 2355677789999999999999975 44
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..-. ..+.+.+.+..+|+|+-.+... +.+.+.|+.|..
T Consensus 426 ~~l~~--~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 426 KTLDY--QKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred cccCH--HHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 44311 1123334445589998777642 223355887765
No 261
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.59 E-value=0.076 Score=39.33 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred ccHHHHHHHHhC----CCcE-EEEcCC--chHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ----GHDV-IVYDKN--TDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~----G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||+.++..|.++ +++| .++||+ .+....-...+.....++.++++ ..|+||=|.+ ++.+.+.+.
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~~------ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYYE------ 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHHH------
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHHH------
Confidence 789999999876 4554 456888 11111112235677889999998 8999999955 456666543
Q ss_pred ccCCCCCEEEEcCCCC---chHHHHHHHHHHhcCCce
Q psy764 73 KHAKPGVIVIDSSTVD---PQVPQTLSNLAREKQITF 106 (286)
Q Consensus 73 ~~l~~g~ivid~st~~---p~~~~~~~~~~~~~g~~~ 106 (286)
+.+..|.-||-+|... +...+++.+..++.|.++
T Consensus 78 ~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 78 KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 3466888888776543 235556666666667654
No 262
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.58 E-value=0.084 Score=45.51 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++.+.+++||+||.+++.+.-+.. +.+++|.+|||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~---------~~vk~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTA---------DMVKPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCH---------HHcCCCCEEEEeee
Confidence 3578889999999999987643221 23578999999874
No 263
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=94.57 E-value=0.16 Score=44.40 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHH----HHHc--------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQT----LAKE--------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~----l~~~--------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|..|+.+|+ +|.++|+++++.+. +... .++.+.+. +.+++||+||++...
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC
Confidence 79999999998887 99999999876431 1111 12223454 457899999998853
No 264
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.48 E-value=0.061 Score=47.28 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|.++||+|++..|++++...+...|+++ .+++.++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 799999999999999999999987765555445432 1345677889999998765
No 265
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.43 E-value=0.083 Score=45.68 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|.+.|.+|++++|.. .++.+.++++|+||.+++.+. .+. .+.+++|.+|
T Consensus 171 vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v~-----~~~lk~gavV 227 (283)
T PRK14192 171 LGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LIK-----KDWIKQGAVV 227 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cCC-----HHHcCCCCEE
Confidence 67888888888888888888732 245566689999999997543 121 2347789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
+|+...
T Consensus 228 iDvg~n 233 (283)
T PRK14192 228 VDAGFH 233 (283)
T ss_pred EEEEEe
Confidence 998653
No 266
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.40 E-value=0.14 Score=43.83 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+|+.-|...++.|++.+.. +.++.+..+++||+|.++.-+.-++ .+.+++|.+|
T Consensus 168 VGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~---------~d~vk~gavV 224 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK---------ADMVKPGAVV 224 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc---------cccccCCCEE
Confidence 4555555555555555555432 2467788999999999999764332 2346789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||....
T Consensus 225 IDVGin 230 (283)
T COG0190 225 IDVGIN 230 (283)
T ss_pred EecCCc
Confidence 998654
No 267
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=94.28 E-value=0.38 Score=40.97 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=67.1
Q ss_pred ccHHHHHHHHhCC---Cc-EEEEcCCchHHHHHHHcCCcccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQG---HD-VIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+.+ ++ +.+|+|++++.+.+.+. ..++.++.++ ....|+|+=|-+ ++++++.... + |.
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~~~---i---L~ 84 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHAEG---C---LT 84 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHHHH---H---Hh
Confidence 6777888776532 44 45679998888888664 7888999996 688999999977 6788887642 3 44
Q ss_pred CCCEEEEcCCC---CchHHHHHHHHHHhcCCc-eEe
Q psy764 77 PGVIVIDSSTV---DPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 77 ~g~ivid~st~---~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
.|.-++-+|.. ++...+++.+..++.|.+ |+.
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 56655555643 344556666666555533 443
No 268
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.27 E-value=0.32 Score=46.16 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH---------cC------C-----ccc--CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK---------EG------A-----NMA--LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~---------~g------~-----~~~--~s~~e~~~~adivi~~v~~ 57 (286)
||..+++.|++.|++|.+++|+.++.+.+.+ .| + .+. ++..+++.++|+||.|...
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence 7999999999999999999999988765532 11 1 111 2334456789999988753
No 269
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.26 E-value=0.098 Score=46.71 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHH-c----C---Cccc-CCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAK-E----G---ANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-~----g---~~~~-~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|..+.+.|.+. ++++. +++++...-+.+.+ . + .... .+..++.+++|+||+|+|+. ..+++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-~s~~~~~~--- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-VSAELAPE--- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-HHHHHHHH---
Confidence 688899999876 45777 55644322222221 1 1 1111 14566667899999999986 44444431
Q ss_pred ccccCCCCCEEEEcCCCC
Q psy764 71 ILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~ 88 (286)
+ ...|..|||.|+..
T Consensus 88 ~---~~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 L---LAAGVKVIDLSADF 102 (346)
T ss_pred H---HhCCCEEEeCChhh
Confidence 2 34689999999753
No 270
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.11 E-value=0.14 Score=45.89 Aligned_cols=74 Identities=20% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEc
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS 84 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~ 84 (286)
.++..|.+.|.+|.+||.....-......++..++++.+++++||+++++.-++ +++++-.. .. +-++.+|+|-
T Consensus 334 ~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~-ef~~~d~~---~~--~m~~~~v~Dg 407 (414)
T COG1004 334 DIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD-EFRDLDFE---KL--LMKTPVVIDG 407 (414)
T ss_pred HHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH-HHhccChh---hh--hccCCEEEec
Confidence 577889999999999997643221111124788999999999999999999874 66665432 12 4466788873
No 271
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=94.05 E-value=0.068 Score=45.46 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=41.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIIS 53 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~ 53 (286)
+||+.|...|.+.||+|++..|++.+.+......+...+..++... .+|+||=
T Consensus 9 lIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavIN 62 (297)
T COG1090 9 LIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVIN 62 (297)
T ss_pred chhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEE
Confidence 5899999999999999999999998876554444444455666666 6998774
No 272
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=94.03 E-value=0.081 Score=39.66 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC-----CHHHH----hh--cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL-----SLSTL----AS--GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-----s~~e~----~~--~adivi~~v~~~~~~~~v~ 65 (286)
||...+..+...|.+|++.++++++.+.+.+.|+...- +..+. .. ..|+||-|++.+..++..+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~ 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence 57777887888899999999999999988888743221 12222 22 3677777777555555544
No 273
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.03 E-value=0.57 Score=43.62 Aligned_cols=110 Identities=8% Similarity=-0.011 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK----L--GMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNG 227 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~----~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~ 227 (286)
+.++.+|.++|.+.+..+.+++|.+.+.++ + ++|..++.++-+.+. -+||+++.......--+ .+.+=-+.+
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~-~l~nl~~~~ 394 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNP-QLDLLFLDP 394 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCC-ChhhhcCCH
Confidence 678999999999999999999999998873 4 899999999988773 56666544222100000 000001122
Q ss_pred Ccc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 228 GFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 228 ~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.|. +......++.+...+-+.|+|+|.+.++...|+.-
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~ 434 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMY 434 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 222 23345556889999999999999999999966644
No 274
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.02 E-value=0.087 Score=49.31 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CC-----------------H--------HHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LS-----------------L--------STLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s-----------------~--------~e~~~~adivi~~ 54 (286)
+|..-+..+...|-+|+++|+++++.+...+.|++.. +. . .+.++++|+||.|
T Consensus 176 iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIet 255 (509)
T PRK09424 176 AGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITT 255 (509)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEEC
Confidence 4566666667778899999999999998888887632 11 0 1112469999999
Q ss_pred cCChh-----HH-HHHhcCCccccccCCCCCEEEEcCC
Q psy764 55 LPASQ-----DV-LDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 55 v~~~~-----~~-~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
...+. .+ ++. .+.+++|.+|+|.+.
T Consensus 256 ag~pg~~aP~lit~~~-------v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 256 ALIPGKPAPKLITAEM-------VASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCcccCcchHHHHH-------HHhcCCCCEEEEEcc
Confidence 97543 22 333 345778999999875
No 275
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.01 E-value=0.16 Score=44.09 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||+++.-+.-+. .+.+++|.+|||.+..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gaiVIDvGin 235 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELID---------GSMLSEGATVIDVGIN 235 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEcccc
Confidence 457888999999999998765221 2347799999998754
No 276
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.98 E-value=0.1 Score=45.85 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=40.7
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHH----HHHcC-----Cc-ccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQT----LAKEG-----AN-MALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~-~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|+++|..|+.+| ++|.++|+++++.+. +.... .. .+.+. +.+++||+||++.+.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 7999999999999 589999999887653 22111 01 12344 5678999999999864
No 277
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=93.95 E-value=0.42 Score=41.51 Aligned_cols=139 Identities=11% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH---HHHHhcCC-----ccccccCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD---VLDAYDGS-----DGILKHAK 76 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~---~~~v~~~~-----~~l~~~l~ 76 (286)
-+++.|.++|++|.+|.-.... ..+ .|+..+++.+++++++|+||+++|-.+. ++.++... +.+++.++
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~ 91 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK 91 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC
Confidence 4789999999999888654210 112 2677788888889999999999993222 22222110 12344455
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE------eccCCCCHHhhh--------------cCceEEEecCCHhhHHH
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL------DAPVSGGTKAAQ--------------EATLTFMVGGDKSSLEK 136 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~------~~pv~g~~~~a~--------------~g~l~~~~gg~~~~~~~ 136 (286)
++.++. +........ +.+.++|+.+. +.++.++.+.++ .+.-..++|. ...-..
T Consensus 92 ~~~~~~--~G~~~~~l~---~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~-G~iG~a 165 (287)
T TIGR02853 92 GHCTIY--VGISNPYLE---QLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGF-GRTGMT 165 (287)
T ss_pred CCCEEE--EecCCHHHH---HHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcC-hHHHHH
Confidence 544332 333333332 35667888887 444434333221 1332333333 333345
Q ss_pred HHHHHHHhcCCeEecC
Q psy764 137 AKPILKCMGRNIVHCG 152 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g 152 (286)
+...+..+|.+++...
T Consensus 166 vA~~L~~~G~~V~v~~ 181 (287)
T TIGR02853 166 IARTFSALGARVFVGA 181 (287)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 5566666776655544
No 278
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.89 E-value=0.16 Score=44.01 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=29.2
Q ss_pred CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 40 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 40 s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
++.+.+++||+||.+++.+. ++. ...+++|.+|||.+..
T Consensus 199 ~l~~~~~~ADIvI~Avg~~~----li~-----~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKAR----FIT-----ADMVKPGAVVIDVGIN 237 (295)
T ss_pred hHHHHHHhCCEEEEecCccC----ccC-----HHHcCCCCEEEEeecc
Confidence 57888999999999998652 221 2346899999998753
No 279
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.81 E-value=0.08 Score=42.03 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=52.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--------------------------CCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--------------------------LSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--------------------------~s~~e~~~~adivi~~v 55 (286)
+|..-+..|...|++|+++|.++++.+.+...+.... ..+.+.++.+|+||.+.
T Consensus 31 vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~ 110 (168)
T PF01262_consen 31 VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNG 110 (168)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHH
T ss_pred HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeec
Confidence 4666777788899999999999988887766543211 12455677899999644
Q ss_pred C-ChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 56 P-ASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 56 ~-~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
- +......++.. ...+.++++.+|+|.|-
T Consensus 111 ~~~~~~~P~lvt~--~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 111 LYWGKRAPRLVTE--EMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HBTTSS---SBEH--HHHHTSSTTEEEEETTG
T ss_pred ccCCCCCCEEEEh--HHhhccCCCceEEEEEe
Confidence 3 22233333322 23455789999999864
No 280
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=93.81 E-value=0.3 Score=42.73 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHc---C------Ccc--cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKE---G------ANM--ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~---g------~~~--~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+..| +++.++|+++++++..+.. . .+. ..+ .+.+++||+||++...+
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 7999999999988 5899999999876554431 0 112 234 46788999999999854
No 281
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.76 E-value=0.11 Score=43.30 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch--HHHHHHHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD--ASQTLAKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|.+.+|+|.+.-|++. ..+.+...|+.+. +++.++++++|.||++++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689999999999999999988864 4667777775432 3455678899999999883
No 282
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.75 E-value=0.19 Score=44.63 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=53.9
Q ss_pred ccHHHHHHHHhC-C-CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQ-G-HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+.+++.|.++ | .++++++|+.++...+... +..-..++.+++.++|+||.+...+. .+... ...++++
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I~----~~~l~~~ 239 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEID----PETLKKP 239 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcCC----HHHhCCC
Confidence 789999999754 5 5899999999888877654 21122357788899999998887543 22111 1234678
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.+++|.+-
T Consensus 240 ~~viDiAv 247 (340)
T PRK14982 240 CLMIDGGY 247 (340)
T ss_pred eEEEEecC
Confidence 88998763
No 283
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.73 E-value=0.42 Score=44.19 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--CCcc-cC---CHHH----HhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--GANM-AL---SLST----LASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~~---s~~e----~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... .. +... -++++|.||++.+++.. .-.... +
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~-n~~~~~---~ 317 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA-NILSSL---L 317 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH-HHHHHH---H
Confidence 57899999999999999999999999888764 3322 11 2221 24689999998886532 222110 2
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+...++++-+.+. .. .+.+...|+.++-
T Consensus 318 ~~~~~~~~ii~~~~~~--~~----~~~~~~~g~~~vi 348 (453)
T PRK09496 318 AKRLGAKKVIALVNRP--AY----VDLVEGLGIDIAI 348 (453)
T ss_pred HHHhCCCeEEEEECCc--ch----HHHHHhcCCCEEE
Confidence 2334455666654432 22 2234556766553
No 284
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.68 E-value=0.3 Score=42.02 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=60.2
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhc-CCccc-cccCCCC
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYD-GSDGI-LKHAKPG 78 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~-~~~~l-~~~l~~g 78 (286)
+++++..|.+.|. +|+++||++++.+.+.+. +.....++ ....+|+||=|.|-.- ..-.. ....+ ...+.++
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm--~~~~~~~~~pi~~~~l~~~ 209 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGM--AGGPEADKLAFPEAEIDAA 209 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcccc--CCCCccccCCCCHHHcCCC
Confidence 5677888888887 599999999999888653 32221111 1246899999998431 10000 00001 1235678
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+.-..+. + .+.+..++.|+..++
T Consensus 210 ~~v~D~vY~P~~-T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 210 SVVFDVVALPAE-T-PLIRYARARGKTVIT 237 (272)
T ss_pred CEEEEeecCCcc-C-HHHHHHHHCcCeEeC
Confidence 899998654433 3 334556677877665
No 285
>PRK10206 putative oxidoreductase; Provisional
Probab=93.57 E-value=0.5 Score=42.14 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCcE-EEEcCCchHHHHHHHcC-CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc-CCC
Q psy764 14 GHDV-IVYDKNTDASQTLAKEG-ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS-STV 87 (286)
Q Consensus 14 G~~V-~~~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~-st~ 87 (286)
+.+| .++|+++++.+...+.+ ...++|.+++++ +.|+|++|+|+....+.+.. .+..|+ ++++. -+.
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~-------al~aGkhVl~EKPla~ 99 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR-------ALEAGKNVLVEKPFTP 99 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH-------HHHcCCcEEEecCCcC
Confidence 4565 46899986653333344 667889999996 57999999998766665543 234454 55553 244
Q ss_pred CchHHHHHHHHHHhcCCceEe
Q psy764 88 DPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+.+++.+..+++|..+..
T Consensus 100 ~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 100 TLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred CHHHHHHHHHHHHHhCCEEEE
Confidence 567788888888777765543
No 286
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.57 E-value=0.29 Score=43.22 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v 55 (286)
||..++..++..| .+|.++|+++++.+...- .+ ++...+++ .+++||+||++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 7899999999888 589999999875432111 01 22235566 779999999999
No 287
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=93.53 E-value=0.15 Score=45.50 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhC-CCcEEE-EcCCchHHHHHHHc-----CC--cccCCHHH-HhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIV-YDKNTDASQTLAKE-----GA--NMALSLST-LASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~e-~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|..+++.|.+. ++++.. .+|+ ++.+.+.+. +. ....+..+ ...++|+||+|+|+... .++... +
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-~~~v~~---a 88 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-MDLAPQ---L 88 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-HHHHHH---H
Confidence 677888888876 567654 5643 222222211 11 01222222 45689999999998644 444321 2
Q ss_pred cccCCCCCEEEEcCCCCch
Q psy764 72 LKHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~ 90 (286)
+..|+.|||.|+...-
T Consensus 89 ---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 89 ---LEAGVKVIDLSADFRL 104 (343)
T ss_pred ---HhCCCEEEECCcccCC
Confidence 3468999999976533
No 288
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.03 E-value=3.3 Score=34.34 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=87.1
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCc----------hHHHHHHHcC-CcccC-----CHHHHh-hcCcEEEEecCChhHHHH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNT----------DASQTLAKEG-ANMAL-----SLSTLA-SGAEFIISMLPASQDVLD 63 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~----------~~~~~l~~~g-~~~~~-----s~~e~~-~~adivi~~v~~~~~~~~ 63 (286)
+|+.+|+.|.+.|. .|.+.|.+. +..+...+.+ +...+ +..++. .+||++|-|-+....-.+
T Consensus 34 VG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~ 113 (217)
T cd05211 34 VGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLE 113 (217)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEeeccccCccChh
Confidence 79999999999988 566779888 6665554443 22211 112222 379999988875422111
Q ss_pred HhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHH
Q psy764 64 AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKC 143 (286)
Q Consensus 64 v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 143 (286)
. .+.+ +-++|+...+. |.+. +-.+.+.++|+.|++--+.+ .|- ++++ .++ +.+.
T Consensus 114 ~-------a~~l-~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd~~~N------aGG--vi~s----~~E----~~q~ 167 (217)
T cd05211 114 N-------AKKL-KAKVVAEGANN-PTTD-EALRILHERGIVVAPDIVAN------AGG--VIVS----YFE----WVQN 167 (217)
T ss_pred h-------Hhhc-CccEEEeCCCC-CCCH-HHHHHHHHCCcEEEChHHhc------CCC--eEeE----HHH----hcCC
Confidence 1 1122 24566665543 3333 55677888998887543332 122 1111 122 1111
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
... .++.. +-+.+-+...+...+.+.+..+++.|+++.+....+
T Consensus 168 ~~~-~~w~~--------~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 211 (217)
T cd05211 168 LQR-LSWDA--------EEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANIL 211 (217)
T ss_pred ccc-cCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 111 11111 111223344556677888888999999887665554
No 289
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.01 E-value=0.69 Score=37.92 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcC-CcccC-CH-HHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEG-ANMAL-SL-STLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s~-~e~~~~adivi~~v~~~~ 59 (286)
||...++.|.+.|++|++++++.. .+..+...+ +.... .+ .+.+.++|+||.|..++.
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 567788889999999999987643 334554443 22211 11 234678999999988764
No 290
>KOG1502|consensus
Probab=92.99 E-value=0.14 Score=44.82 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH---HHHHHc-C-----------CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS---QTLAKE-G-----------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~---~~l~~~-g-----------~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+.+.|+++||+|.+--|+++.- +.+.+. | +.-..+..+++++||.||-+-
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 78999999999999999999988762 224332 1 344568899999999988653
No 291
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.96 E-value=0.14 Score=44.90 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=37.4
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCc--hHHHHH----H----HcC----CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNT--DASQTL----A----KEG----ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~--~~~~~l----~----~~g----~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|..++..|+..|+ +|.++||++ ++++.. . ..+ +....+. +.+++||+||+|+..
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViitag~ 82 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIITAGV 82 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEecCC
Confidence 68899999999987 499999965 443211 1 112 1223454 458999999999974
No 292
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=92.90 E-value=0.12 Score=44.41 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=37.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++...+...+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 799999999999999999999887643322111110 1234456677888887775
No 293
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.88 E-value=0.31 Score=41.58 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=49.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|+++||+|.+..|+.++.+++.+. +++-. -+++++-+=+.++.++..+... +.....+=++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~~~---l~~~~~~Idv 87 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLEDE---LKERGGPIDV 87 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHHHH---HHhcCCcccE
Confidence 79999999999999999999999999888653 11111 1344444445666777776653 3332223356
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 88 LVNNAG 93 (265)
T COG0300 88 LVNNAG 93 (265)
T ss_pred EEECCC
Confidence 776543
No 294
>KOG1200|consensus
Probab=92.72 E-value=0.48 Score=38.36 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.+++..|+++|++|.+.|++.+.++..+.. +.. -....=+|| |..+.+++..+++ ..+.+.+-.+
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~----~~h~aF~~D-----VS~a~~v~~~l~e---~~k~~g~psv 93 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY----GDHSAFSCD-----VSKAHDVQNTLEE---MEKSLGTPSV 93 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC----Cccceeeec-----cCcHHHHHHHHHH---HHHhcCCCcE
Confidence 79999999999999999999998766655432 211 011112344 4566677776664 5556667788
Q ss_pred EEEcCCCCchH
Q psy764 81 VIDSSTVDPQV 91 (286)
Q Consensus 81 vid~st~~p~~ 91 (286)
+|+|..+.-+.
T Consensus 94 lVncAGItrD~ 104 (256)
T KOG1200|consen 94 LVNCAGITRDG 104 (256)
T ss_pred EEEcCcccccc
Confidence 99988775543
No 295
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=92.69 E-value=0.25 Score=43.58 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=60.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|...|.+|...|-+|.|++.+|-++-+..=.|.++. ..+|++..+||+|+|..+-. |+.. .-...++.|.++
T Consensus 220 vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~~--eh~~~MkDgaIl 292 (420)
T COG0499 220 VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIRK--EHFEKMKDGAIL 292 (420)
T ss_pred cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccCH--HHHHhccCCeEE
Confidence 6889999999999999999999988766665687765 48899999999999998733 2221 122346778888
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
.+..--
T Consensus 293 ~N~GHF 298 (420)
T COG0499 293 ANAGHF 298 (420)
T ss_pred eccccc
Confidence 877643
No 296
>PRK06182 short chain dehydrogenase; Validated
Probab=92.62 E-value=0.49 Score=40.39 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|++.+|++++.+.+... +..++..-+.++.+++.++.. +.+...+=+++
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~---~~~~~~~id~l 78 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLASL-------------GVHPLSLDVTDEASIKAAVDT---IIAEEGRIDVL 78 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998877655432 234455556666676666653 33222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 79 i~~ag~ 84 (273)
T PRK06182 79 VNNAGY 84 (273)
T ss_pred EECCCc
Confidence 766554
No 297
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.50 E-value=0.64 Score=39.99 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC----CcccCCHHHHh------hc-CcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG----ANMALSLSTLA------SG-AEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-adivi~~v~~ 57 (286)
+|+.+++.|.+.|++|.+..|++++.....-.. ..-.+++.+++ ++ +|.+|++.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 799999999999999999999987543210001 11123455555 45 8999988774
No 298
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=92.43 E-value=0.49 Score=39.66 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.+.|+.|+++|++|.+..|+.++++.++..--. ..+..+.+=|.|.++++..+.. +.+...+=+++
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------~~~~~~~~DVtD~~~~~~~i~~---~~~~~g~iDiL 85 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEIGA---------GAALALALDVTDRAAVEAAIEA---LPEEFGRIDIL 85 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------CceEEEeeccCCHHHHHHHHHH---HHHhhCcccEE
Confidence 79999999999999999999999999988754111 3455666667787787777663 33333344666
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
|+-....+
T Consensus 86 vNNAGl~~ 93 (246)
T COG4221 86 VNNAGLAL 93 (246)
T ss_pred EecCCCCc
Confidence 76544433
No 299
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.37 E-value=1.1 Score=38.73 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=60.6
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----CC---cccC--CHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----GA---NMAL--SLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~~~--s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+++++..|++.|. +|+++||+.++++.+.+. +. ...+ +..+...++|+||=|.|-.- ..--. ..+
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm--~~~~~--~~~ 214 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM--PAHPG--TAF 214 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCC--CCCCC--CCC
Confidence 5678888888886 799999999999888653 11 1111 12335567999999988431 11000 001
Q ss_pred -cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 -LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 -~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+.++.++.|+--.. ..+. +.+..++.|+..++
T Consensus 215 ~~~~l~~~~~v~D~vY~P-~~T~-ll~~A~~~G~~~~~ 250 (283)
T PRK14027 215 DVSCLTKDHWVGDVVYMP-IETE-LLKAARALGCETLD 250 (283)
T ss_pred CHHHcCCCcEEEEcccCC-CCCH-HHHHHHHCCCEEEc
Confidence 12356678899986543 3332 34455667776665
No 300
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.30 E-value=1.5 Score=40.82 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccC--CHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMAL--SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~--s~~e~~~~adivi~~v 55 (286)
.|.++|+.|.+.|++|+++|+++. ..+++.+.|+.+.. ...+.+.++|+||.+.
T Consensus 25 sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 25 SNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 367899999999999999998753 22456666876542 2345567899998874
No 301
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.20 E-value=0.64 Score=40.39 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=59.1
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCc---hHHHHHHHc-C------CcccCCH------HHHhhcCcEEEEecCChhH--HHH
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNT---DASQTLAKE-G------ANMALSL------STLASGAEFIISMLPASQD--VLD 63 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~---~~~~~l~~~-g------~~~~~s~------~e~~~~adivi~~v~~~~~--~~~ 63 (286)
+++++..|++.|. +|+++||++ ++++.+.+. + +.. .++ .+...++|+||-|.|-.-. ...
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~ 214 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGTKVGMKPLENE 214 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECCCCCCCCCCCC
Confidence 4566677888886 799999995 477777542 1 111 222 2345678999999885311 000
Q ss_pred -HhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 64 -AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 64 -v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
... -...+.++.++.|+--. |..+ .+.+..+++|+..++
T Consensus 215 ~~~~----~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 215 SLVN----DISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCC----cHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEEC
Confidence 110 01235678899998644 4333 345556677877765
No 302
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.13 E-value=0.53 Score=39.88 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.. -....++..-+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 84 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQRF----------GDHVLVVEGDVTSYADNQRAVDQ---TVDAFGKLDCF 84 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 799999999999999999999988877664431 01233444445666666666553 33323333577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 i~~ag~ 90 (263)
T PRK06200 85 VGNAGI 90 (263)
T ss_pred EECCCC
Confidence 776654
No 303
>PRK06349 homoserine dehydrogenase; Provisional
Probab=92.00 E-value=1.3 Score=40.79 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred ccHHHHHHHHhC--------CC--c-EEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQ--------GH--D-VIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~--------G~--~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+++.|.++ |. + +.++||++++...+...+..+++++.++++ +.|+|+.|.+......+.
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~---- 89 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIEPAREL---- 89 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCchHHHHH----
Confidence 577777666443 33 3 446799887654332224567788999986 469999988754332333
Q ss_pred ccccccCCCCCEEEEcCC-CCchHHHHHHHHHHhcCCceE
Q psy764 69 DGILKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st-~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+...+..|+-||-... ......+++.+..+++|..+.
T Consensus 90 --~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 90 --ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred --HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 2344667887773322 112344566666667776544
No 304
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.96 E-value=0.46 Score=41.86 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=65.4
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----CC---cc-cCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----GA---NM-ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~-~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
|.-|.+.|..+.+ ++..+..+..+=+.+.+. |. .. ..+++++ .++||+||+|+|+..+.+-|-. +
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s~~~v~~----l 90 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAELVPE----L 90 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhHHHHHHH----H
Confidence 5667777776654 666554333222222221 21 11 1233443 4569999999998655443332 2
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHh---cCCceEeccCCCCHH----hhhcCceEEEecCCH-hhHHHHHHHHHH
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLARE---KQITFLDAPVSGGTK----AAQEATLTFMVGGDK-SSLEKAKPILKC 143 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~---~g~~~~~~pv~g~~~----~a~~g~l~~~~gg~~-~~~~~~~~ll~~ 143 (286)
+.+|..|||+|+-.--...++-+.+=. .+-.+++--+.|-|+ ......++---|+-. ...-.+.||++.
T Consensus 91 ---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 91 ---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred ---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHc
Confidence 335677999998543222222221111 112233333334332 223344444445543 444567788876
No 305
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=91.94 E-value=0.18 Score=44.94 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCc---EEEE--cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHD---VIVY--DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.+.+|+ +... .|+..+.-........+.+...+.++++|+||+|+|+. ...++... ...
T Consensus 19 vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~~~~------~~~ 91 (344)
T PLN02383 19 VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKFGPI------AVD 91 (344)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHHHHH------HHh
Confidence 688899999888873 3322 44443322221111222222224458899999999975 44444331 234
Q ss_pred CCCEEEEcCCC
Q psy764 77 PGVIVIDSSTV 87 (286)
Q Consensus 77 ~g~ivid~st~ 87 (286)
.|..|||.|+.
T Consensus 92 ~g~~VIDlS~~ 102 (344)
T PLN02383 92 KGAVVVDNSSA 102 (344)
T ss_pred CCCEEEECCch
Confidence 68899999974
No 306
>PRK11579 putative oxidoreductase; Provisional
Probab=91.71 E-value=1 Score=40.06 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCCE-EEEc-CCC
Q psy764 14 GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI-VIDS-STV 87 (286)
Q Consensus 14 G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i-vid~-st~ 87 (286)
+.++. ++|+++++.. .+. +...++|++++++ +.|+|++|+|+....+.+.. .+..|+- +++. -+.
T Consensus 29 ~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~-------al~aGkhVl~EKPla~ 99 (346)
T PRK11579 29 GLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA-------ALEAGKHVVVDKPFTV 99 (346)
T ss_pred CCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------HHHCCCeEEEeCCCCC
Confidence 56654 6899987654 222 5667889999996 57999999998766555543 2445654 4443 234
Q ss_pred CchHHHHHHHHHHhcCCceE
Q psy764 88 DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~ 107 (286)
+..+.+++.+..++.|..+.
T Consensus 100 t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 100 TLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CHHHHHHHHHHHHHhCCEEE
Confidence 56777888887777776544
No 307
>PRK06180 short chain dehydrogenase; Provisional
Probab=91.68 E-value=0.58 Score=40.07 Aligned_cols=73 Identities=8% Similarity=-0.035 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+... .+...+..-+.++.++...+.+ +.+...+=+++
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~----------~~~~~~~~D~~d~~~~~~~~~~---~~~~~~~~d~v 82 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEALHP----------DRALARLLDVTDFDAIDAVVAD---AEATFGPIDVL 82 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC----------CCeeEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 7999999999999999999999887766644210 1223334445666666665543 33322233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 83 v~~ag~ 88 (277)
T PRK06180 83 VNNAGY 88 (277)
T ss_pred EECCCc
Confidence 776544
No 308
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.51 E-value=0.24 Score=42.91 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCc------ccCCHHHHhhcCcEEEEecCChh--HHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GAN------MALSLSTLASGAEFIISMLPASQ--DVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~------~~~s~~e~~~~adivi~~v~~~~--~~~~v~~~~~~l~ 72 (286)
+|+.-|+-..--|-+|++.|+|.+|...+... +.+ -...+++.+.++|+||-+|--+. +-+-|.. ...
T Consensus 179 vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~---e~v 255 (371)
T COG0686 179 VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTR---EMV 255 (371)
T ss_pred ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhH---HHH
Confidence 46666666666678999999999998877554 332 12346788899999998874332 2222222 255
Q ss_pred ccCCCCCEEEEcC
Q psy764 73 KHAKPGVIVIDSS 85 (286)
Q Consensus 73 ~~l~~g~ivid~s 85 (286)
+.++||.+|||..
T Consensus 256 k~MkpGsVivDVA 268 (371)
T COG0686 256 KQMKPGSVIVDVA 268 (371)
T ss_pred HhcCCCcEEEEEE
Confidence 6789999999975
No 309
>PRK05693 short chain dehydrogenase; Provisional
Probab=91.51 E-value=0.82 Score=39.01 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|++.+|++++.+.+.+.+ .+.+..=+.++..++.++.. +.+...+=+++
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 76 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAAAG-------------FTAVQLDVNDGAALARLAEE---LEAEHGGLDVL 76 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------------CeEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 789999999999999999999987766554322 23343445666667666653 32222233677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 77 i~~ag~ 82 (274)
T PRK05693 77 INNAGY 82 (274)
T ss_pred EECCCC
Confidence 777653
No 310
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=91.45 E-value=0.32 Score=43.97 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcC-------CcccCCHH-HHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEG-------ANMALSLS-TLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..+.+.|.++ .++|..+.++.++-+.+.... .....+.+ +.++++|+||+|+|+. ...++..
T Consensus 50 vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s~~i~~------ 122 (381)
T PLN02968 50 TGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TTQEIIK------ 122 (381)
T ss_pred HHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HHHHHHH------
Confidence 688888988887 568888766544322222111 11111222 2247899999999974 4555543
Q ss_pred ccCCCCCEEEEcCCCC
Q psy764 73 KHAKPGVIVIDSSTVD 88 (286)
Q Consensus 73 ~~l~~g~ivid~st~~ 88 (286)
.+..|..|||.|+..
T Consensus 123 -~~~~g~~VIDlSs~f 137 (381)
T PLN02968 123 -ALPKDLKIVDLSADF 137 (381)
T ss_pred -HHhCCCEEEEcCchh
Confidence 134678999999754
No 311
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=91.28 E-value=1.3 Score=33.94 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=60.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|+.++++|++.|. +++++|.+.-....+... |-.-+...++.++ ..++-+.+.+....-...
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~------ 83 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL------ 83 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhH------
Confidence 68999999999998 699998774333333211 2111122222222 123444444321111111
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
...+.+-++||+++.. +.....+.+.+.+.++.|+++-..|
T Consensus 84 -~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 84 -DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred -HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1223466899988665 5666678888888999999877665
No 312
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.16 E-value=1.8 Score=40.68 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC--CHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL--SLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~e~~~~adivi~~v~~ 57 (286)
.|.+.++.|.+.|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-.-
T Consensus 23 sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 23 TGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 47778888899999999999887776666666775542 244556789999887643
No 313
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.14 E-value=0.25 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.120 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----cCCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----EGANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+-+.+-..+.||+|+.+-||++|...+.. ..+.-..++++.+.+-|+||.+..-
T Consensus 12 ~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 12 AGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred hHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5788888899999999999999998765321 1122223455778889999998853
No 314
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.76 E-value=3.6 Score=38.00 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch----HHHHHHHcCCccc--CCHHHHhhc-CcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD----ASQTLAKEGANMA--LSLSTLASG-AEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~----~~~~l~~~g~~~~--~s~~e~~~~-adivi~~v 55 (286)
+|.+.|+.|++.|++|.++|++.. ..+.+.+.|+... ....++... .|+||.+-
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 588899999999999999998653 2344656676654 234455554 89888765
No 315
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.69 E-value=0.86 Score=40.37 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+++.+. ..+.-.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 88 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVAEE-------CRALGAEVLVVPTDVTDADQVKALATQ---AASFGGRIDVW 88 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998877655432 111001122333445666777776653 32222233577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 89 VnnAG 93 (330)
T PRK06139 89 VNNVG 93 (330)
T ss_pred EECCC
Confidence 77654
No 316
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.81 Score=38.78 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+++.+.- -....++..-+.+..+++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 84 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAASL----------GERARFIATDITDDAAIERAVAT---VVARFGRVDIL 84 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999987766654320 01223333445566666666553 33323333566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 85 v~~ag 89 (261)
T PRK08265 85 VNLAC 89 (261)
T ss_pred EECCC
Confidence 66544
No 317
>PRK12828 short chain dehydrogenase; Provisional
Probab=90.64 E-value=1.3 Score=36.63 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++..+..+. .. ....+++..-+.+..+++.++.+ +.+...+-+.|
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 86 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE---VNRQFGRLDAL 86 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH---HHHHhCCcCEE
Confidence 78999999999999999999988765443221 00 11244555666777777776653 33323334567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
++....
T Consensus 87 i~~ag~ 92 (239)
T PRK12828 87 VNIAGA 92 (239)
T ss_pred EECCcc
Confidence 766543
No 318
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=90.59 E-value=1.1 Score=38.82 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=52.6
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHH--HHHHHcCCcc-cCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDAS--QTLAKEGANM-ALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+.++..+.+. +.++. ++|+++++. +...+.|+.. +++.+++++ +.|+||+|.|+....+... ..
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~-------~a 84 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHAR-------LL 84 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHH-------HH
Confidence 566666666643 45654 578888753 3334457654 457888875 5788999999875544433 23
Q ss_pred CCCCCEEEEcCCCC
Q psy764 75 AKPGVIVIDSSTVD 88 (286)
Q Consensus 75 l~~g~ivid~st~~ 88 (286)
+..|+.|+|.+...
T Consensus 85 l~aGk~VIdekPa~ 98 (285)
T TIGR03215 85 AELGKIVIDLTPAA 98 (285)
T ss_pred HHcCCEEEECCccc
Confidence 56789998877543
No 319
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=90.58 E-value=0.76 Score=38.57 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|.+.+|++++.+.+...- ...-.+..++..-+.++.+++.++.. +.+...+-.+|
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 85 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAAEAL-------QKAGGKAIGVAMDVTDEEAINAGIDY---AVETFGGVDIL 85 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-------HhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999999999988766553220 00001223444455666666666653 33333334567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 86 i~~a~ 90 (258)
T PRK12429 86 VNNAG 90 (258)
T ss_pred EECCC
Confidence 76654
No 320
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.49 E-value=1.7 Score=41.17 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=59.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc--cCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccc-cccCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM--ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI-LKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~ 76 (286)
+|.+++..|++.|.+|+++||+.++.+.+.+. +... ..+..+. ...+|+|+-+.|-.- ..-... ..+ ...++
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm--~~~~~~-~pl~~~~l~ 466 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGM--QPNVDE-TPISKHALK 466 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCC--CCCCCC-CcccHhhCC
Confidence 57899999999999999999999998888653 2211 1222221 235677776665321 100000 001 12355
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+++|+.-.... + .+.+..++.|+..++
T Consensus 467 ~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 467 HYSLVFDAVYTPKI-T-RLLREAEESGAIIVS 496 (529)
T ss_pred CCCEEEEeccCCCc-C-HHHHHHHHCCCeEeC
Confidence 67889998654443 3 234455667776654
No 321
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.47 E-value=0.79 Score=38.67 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+. ..+.-....++-.-+.++.+++..+.. +.+...+=+.+
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------i~~~~~~~~~~~~Dl~d~~~i~~~~~~---~~~~~~~id~v 93 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAAAH-------LEALGIDALWIAADVADEADIERLAEE---TLERFGHVDIL 93 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 78999999999999999999998776554321 000001233344445566666665553 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 94 i~~ag~ 99 (259)
T PRK08213 94 VNNAGA 99 (259)
T ss_pred EECCCC
Confidence 776543
No 322
>PRK07890 short chain dehydrogenase; Provisional
Probab=90.44 E-value=0.89 Score=38.21 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.. ...-.+...+..-+.+++.++.++.. +.+...+-+.+
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~~d~v 86 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVAAEI-------DDLGRRALAVPTDITDEDQCANLVAL---ALERFGRVDAL 86 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHhCCceEEEecCCCCHHHHHHHHHH---HHHHcCCccEE
Confidence 799999999999999999999987665553221 00001223444445566666666543 33323333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 87 i~~ag~ 92 (258)
T PRK07890 87 VNNAFR 92 (258)
T ss_pred EECCcc
Confidence 666543
No 323
>KOG1014|consensus
Probab=90.43 E-value=0.35 Score=41.85 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=29.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE 33 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 33 (286)
||.++|+-|+++|++|.+..|+++|.+..+++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 79999999999999999999999999887653
No 324
>PRK05568 flavodoxin; Provisional
Probab=90.43 E-value=6.3 Score=29.88 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChh-------HHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ-------DVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~-------~~~~v~~~~~~l~~~l~~ 77 (286)
.++..+.+.|++|.+++.+... . ..+.++|.|++..|... .++..+.. +... .+
T Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~--------------~-~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~---~~~~-~~ 81 (142)
T PRK05568 21 LIAEGAKENGAEVKLLNVSEAS--------------V-DDVKGADVVALGSPAMGDEVLEEGEMEPFVES---ISSL-VK 81 (142)
T ss_pred HHHHHHHHCCCeEEEEECCCCC--------------H-HHHHhCCEEEEECCccCcccccchhHHHHHHH---hhhh-hC
Confidence 3444555556666666544321 1 23578999999999642 45566553 3222 24
Q ss_pred CCEEEEcCC-C--CchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec-CCHhhHHHHHHHHHHh
Q psy764 78 GVIVIDSST-V--DPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCM 144 (286)
Q Consensus 78 g~ivid~st-~--~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~ 144 (286)
++.+.-.+| . .....+.+.+.+.+.|..++..|+ .+-+ .+++.+++++++-+.+
T Consensus 82 ~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~~-------------~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 82 GKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEGL-------------IVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred CCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCcE-------------EEecCCCHHHHHHHHHHHHHH
Confidence 554433333 2 245667788888888888776432 1112 2466777777766554
No 325
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.29 E-value=0.31 Score=37.46 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.6
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc----------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|..+|..|...+. ++.++|+++++++..+.. .........+.+++||+|+++...
T Consensus 12 VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 12 VGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 68899999988875 799999998765443221 123444566777899999988754
No 326
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.23 E-value=1.2 Score=39.13 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc---------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|..|+..|. ++.++|++.++++..... ......+.-+.+++||+||++-..
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 78999999999887 799999998775433221 123333344567999999998754
No 327
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=90.18 E-value=0.88 Score=39.79 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|.-|.+.|.++.+ +-+...+.++. .. ..+.+++++++|++|+|+|+. ...+.... + ...|..|
T Consensus 13 ~G~el~rlL~~HP~-~el~~l~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~~~---~---~~~g~~V 76 (310)
T TIGR01851 13 TGLQIRERLSGRDD-IELLSIAPDRR-------KD-AAERAKLLNAADVAILCLPDD-AAREAVSL---V---DNPNTCI 76 (310)
T ss_pred hHHHHHHHHhCCCC-eEEEEEecccc-------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHHHH---H---HhCCCEE
Confidence 57778888877643 33322221110 11 124566778999999999976 44444331 2 2468899
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.|+.
T Consensus 77 IDlSad 82 (310)
T TIGR01851 77 IDASTA 82 (310)
T ss_pred EECChH
Confidence 999973
No 328
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.17 E-value=1 Score=38.42 Aligned_cols=71 Identities=13% Similarity=-0.007 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ....++..=+.++++++.++.. +.+...+=.++
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 82 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETAAEL-----------GLVVGGPLDVTDPASFAAFLDA---VEADLGPIDVL 82 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------ccceEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988876654321 0223333334566666666653 33222233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 83 i~~ag 87 (273)
T PRK07825 83 VNNAG 87 (273)
T ss_pred EECCC
Confidence 66544
No 329
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.13 E-value=0.96 Score=39.24 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|+.++.+.+.+.- .+.-....++-.-+.+++++..++.. +.+...+=+++
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l-------~~~~~~~~~~~~Dl~d~~~v~~~~~~---~~~~~g~id~l 121 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVADRI-------TRAGGDAMAVPCDLSDLDAVDALVAD---VEKRIGGVDIL 121 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776654320 00001122333344556666666653 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 122 i~~AG~ 127 (293)
T PRK05866 122 INNAGR 127 (293)
T ss_pred EECCCC
Confidence 776543
No 330
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=90.10 E-value=0.38 Score=40.28 Aligned_cols=72 Identities=26% Similarity=0.309 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH----HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-C
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS----QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-K 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~ 76 (286)
||.++|+.|++.|++|++.+|+.++. +++.+.. ..+++.+-+.+++.++.++.. +.+.. .
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~D~~~~~~v~~~~~~---~~~~~~g 72 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKLADALEELAKEY------------GAEVIQCDLSDEESVEALFDE---AVERFGG 72 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT------------TSEEEESCTTSHHHHHHHHHH---HHHHHCS
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc------------CCceEeecCcchHHHHHHHHH---HHhhcCC
Confidence 79999999999999999999999874 2232211 133455556677777777664 44433 3
Q ss_pred CCCEEEEcCCCC
Q psy764 77 PGVIVIDSSTVD 88 (286)
Q Consensus 77 ~g~ivid~st~~ 88 (286)
+=+++|++....
T Consensus 73 ~iD~lV~~a~~~ 84 (241)
T PF13561_consen 73 RIDILVNNAGIS 84 (241)
T ss_dssp SESEEEEEEESC
T ss_pred CeEEEEeccccc
Confidence 345666654433
No 331
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=89.97 E-value=1.5 Score=36.68 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=59.6
Q ss_pred ccHHHHHHHHhCCCcEE-EEcC----------CchHHHHHHHc-C-------CcccCCHHHHh-hcCcEEEEecCChhHH
Q psy764 2 ISTLKLFFLQFQGHDVI-VYDK----------NTDASQTLAKE-G-------ANMALSLSTLA-SGAEFIISMLPASQDV 61 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~e~~-~~adivi~~v~~~~~~ 61 (286)
||..+++.|.+.|.+|+ +.|. +.+.+.+..+. | .... ++.++. .+|||++-|-+....-
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDILIPAALENQIT 120 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEEEecCccCccC
Confidence 78999999999999988 5577 66665555443 2 1111 222222 3789999888754332
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
.+... .+ +=++|+..++. |-+ .+..+.+.++|+.|++-
T Consensus 121 ~~~~~-------~l-~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 121 ADNAD-------RI-KAKIIVEAANG-PTT-PEADEILHERGVLVVPD 158 (227)
T ss_pred HHHHh-------hc-eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence 23222 22 23566665544 334 56667888999988853
No 332
>PRK07024 short chain dehydrogenase; Provisional
Probab=89.96 E-value=1.1 Score=37.82 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ... .+...+-+-+.++.++++.+.. +.+...+-+++
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~~~-------~~~~~~~~Dl~~~~~i~~~~~~---~~~~~g~id~l 82 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAARL-PKA-------ARVSVYAADVRDADALAAAAAD---FIAAHGLPDVV 82 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-ccC-------CeeEEEEcCCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 799999999999999999999988776654321 000 0233344445556666666543 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 83 v~~ag~ 88 (257)
T PRK07024 83 IANAGI 88 (257)
T ss_pred EECCCc
Confidence 776543
No 333
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.95 E-value=0.85 Score=38.37 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-.+...+..-+.++.++++.+.. +.+...+=+++
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 90 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLADE-------IGTSGGKVVPVCCDVSQHQQVTSMLDQ---VTAELGGIDIA 90 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhcCCeEEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999998876655432 000001122233335566666666543 33323233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 v~~ag~ 96 (253)
T PRK05867 91 VCNAGI 96 (253)
T ss_pred EECCCC
Confidence 666543
No 334
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.88 E-value=1.1 Score=37.80 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|.+.+|+.++.+.+.+.- -.....+-.-+.++.+++.++.. +.+...+=+.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 84 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAALEI----------GPAAIAVSLDVTRQDSIDRIVAA---AVERFGGIDIL 84 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh----------CCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 699999999999999999999988776654321 00122233334556666666553 33333334567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 85 i~~ag 89 (257)
T PRK07067 85 FNNAA 89 (257)
T ss_pred EECCC
Confidence 76654
No 335
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.86 E-value=2.7 Score=34.48 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcC-CcccC-C-HHHHhhcCcEEEEecCChhHHHHHhcC----------
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEG-ANMAL-S-LSTLASGAEFIISMLPASQDVLDAYDG---------- 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s-~~e~~~~adivi~~v~~~~~~~~v~~~---------- 67 (286)
+|..-++.|++.|.+|++++.+.. ..+.+.+.| +.... + ..+.++++++||.|..++.--..+...
T Consensus 20 va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 20 VALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHAARARGVPVNV 99 (205)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEE
Confidence 355667889999999999987653 345565553 32211 1 134567999999998876322222210
Q ss_pred ---C---ccccc-cCCCCCEEEEcCC--CCchHHHHHHHHHHh
Q psy764 68 ---S---DGILK-HAKPGVIVIDSST--VDPQVPQTLSNLARE 101 (286)
Q Consensus 68 ---~---~~l~~-~l~~g~ivid~st--~~p~~~~~~~~~~~~ 101 (286)
+ +-+.+ ....|.+.|-.|| .+|..++++.+.+++
T Consensus 100 ~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 100 VDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred CCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 0 00111 1345666665554 478888777777655
No 336
>PRK07109 short chain dehydrogenase; Provisional
Probab=89.84 E-value=0.96 Score=40.09 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. ..+.-.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~~g~~~~~v~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 89 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRAAGGEALAVVADVADAEAVQAAADR---AEEELGPIDTW 89 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHcCCcEEEEEecCCCHHHHHHHHHH---HHHHCCCCCEE
Confidence 79999999999999999999998876655331 000001122233344566667766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 90 InnAg~ 95 (334)
T PRK07109 90 VNNAMV 95 (334)
T ss_pred EECCCc
Confidence 776543
No 337
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=89.84 E-value=1.2 Score=37.50 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. .++.-.+.+.+..-+.++.++..++.+ +.....+=..+
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 92 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAVAA-------LRAAGGAAEALAFDIADEEAVAAAFAR---IDAEHGRLDIL 92 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 78999999999999999999998766554321 111001233444445666666666653 33322233456
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 93 i~~ag 97 (256)
T PRK06124 93 VNNVG 97 (256)
T ss_pred EECCC
Confidence 66544
No 338
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=89.73 E-value=0.077 Score=41.17 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh--hHHHHHhcCCccccccCCCCCEEE
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS--QDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~--~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
++...|.+.+++|.++|++++....- .+........+++.+||+|++.-.+= ..++.++ ...++++.++
T Consensus 22 P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL-------~~~~~~~~vi 92 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGSTLVNGTIDDIL-------ELARNAREVI 92 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHH-------HHTTTSSEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHH-------HhCccCCeEE
Confidence 57788888899999999999754321 12224456778899999998764310 1234443 3344556666
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
-.....|-.. +.+...|+.++.
T Consensus 93 l~GpS~~~~P----~~l~~~Gv~~v~ 114 (147)
T PF04016_consen 93 LYGPSAPLHP----EALFDYGVTYVG 114 (147)
T ss_dssp EESCCGGS-G----GGGCCTT-SEEE
T ss_pred EEecCchhhH----HHHHhCCCCEEE
Confidence 5555444322 123455666664
No 339
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=89.68 E-value=1 Score=36.88 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|.+.|.+|++..|+.++.++..+..-.... .++=|.|.+..+++++. +...-+.=.++
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t-----------~v~Dv~d~~~~~~lvew---Lkk~~P~lNvl 82 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHT-----------EVCDVADRDSRRELVEW---LKKEYPNLNVL 82 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchhe-----------eeecccchhhHHHHHHH---HHhhCCchhee
Confidence 79999999999999999999999998877654322211 12224445556666653 33333333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 83 iNNAGI 88 (245)
T COG3967 83 INNAGI 88 (245)
T ss_pred eecccc
Confidence 666554
No 340
>PRK08862 short chain dehydrogenase; Provisional
Probab=89.58 E-value=1.2 Score=37.02 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC-CCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK-PGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~-~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+++.+. + .+.-.+.-.+.+-+.++.+++.++.. +.+.+. +=++
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-i------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~~iD~ 86 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYEQ-C------SALTDNVYSFQLKDFSQESIRHLFDA---IEQQFNRAPDV 86 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-H------HhcCCCeEEEEccCCCHHHHHHHHHH---HHHHhCCCCCE
Confidence 79999999999999999999999887665432 0 00000111122235667777776653 333222 2356
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 87 li~nag 92 (227)
T PRK08862 87 LVNNWT 92 (227)
T ss_pred EEECCc
Confidence 676653
No 341
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.56 E-value=1 Score=38.19 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-.+..++-.-+.++.+++.++.. +.+...+=+++
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 91 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVAEQ-------IRAAGRRAHVVAADLAHPEATAGLAGQ---AVEAFGRLDIV 91 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655432 000001122333445666667666653 33323333577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 92 i~~Ag 96 (263)
T PRK07814 92 VNNVG 96 (263)
T ss_pred EECCC
Confidence 77653
No 342
>PRK07478 short chain dehydrogenase; Provisional
Probab=89.53 E-value=1.1 Score=37.70 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.-.+..++..-+.++.+++.++.. +.+...+=+.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 87 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLVAE-------IRAEGGEAVALAGDVRDEAYAKALVAL---AVERFGGLDIA 87 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 78999999999999999999998876655322 000001122233334555566665543 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 i~~ag~ 93 (254)
T PRK07478 88 FNNAGT 93 (254)
T ss_pred EECCCC
Confidence 666544
No 343
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.51 E-value=1.4 Score=40.63 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=39.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc-hHH----HHHHHcCCccc--CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT-DAS----QTLAKEGANMA--LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~-~~~----~~l~~~g~~~~--~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|+.|++.|++|+++|++. +.. +++.+.|+.+. +...+...++|+||.+...
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 58899999999999999999975 333 33444465432 2334556789999988653
No 344
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=89.49 E-value=1.7 Score=37.84 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHH--HHHHHcCCcc-cCCHHHHhh-----cCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDAS--QTLAKEGANM-ALSLSTLAS-----GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~-----~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+...+.+. +.++. ++|+++++. +...+.|+.. +++.+++++ +.|+||.+.|.....+...
T Consensus 15 IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~------ 88 (302)
T PRK08300 15 IGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHVRHAA------ 88 (302)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHHHHHH------
Confidence 566666667654 44544 679988642 3344568765 478898885 5888999999754433322
Q ss_pred cccCCCCCEEEEcCCCC
Q psy764 72 LKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~ 88 (286)
.....|+.+||.+...
T Consensus 89 -~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 89 -KLREAGIRAIDLTPAA 104 (302)
T ss_pred -HHHHcCCeEEECCccc
Confidence 2345789999988654
No 345
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=89.49 E-value=1.1 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|+++|++|.+.+|+.++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 7999999999999999999999887776643
No 346
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.45 E-value=1.2 Score=37.42 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+.- -.+..++-.-+.++.+++.++.. +.+...+-+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~i~~~~~~---~~~~~~~id~v 78 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKDEL----------GDNLYIAQLDVRNRAAIEEMLAS---LPAEWRNIDVL 78 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999999999988776654320 01233334445666666666653 33333334566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 79 i~~ag 83 (248)
T PRK10538 79 VNNAG 83 (248)
T ss_pred EECCC
Confidence 66554
No 347
>PRK07074 short chain dehydrogenase; Provisional
Probab=89.43 E-value=1.4 Score=37.07 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..++..|+++|++|++.+|++++.+.+.+.- .. ....++-.-+.+..++...+.. +.....+=+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 81 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFADAL---GD------ARFVPVACDLTDAASLAAALAN---AAAERGPVDVL 81 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cC------CceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988776664321 00 1233444556666666555542 32222223567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (257)
T PRK07074 82 VANAGA 87 (257)
T ss_pred EECCCC
Confidence 766654
No 348
>PRK07454 short chain dehydrogenase; Provisional
Probab=89.42 E-value=1.2 Score=37.07 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++.+.+.+. ..+.-.+..++..=+.++..+..++.. +.+...+=+.+
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 87 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEALAAE-------LRSTGVKAAAYSIDLSNPEAIAPGIAE---LLEQFGCPDVL 87 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhCCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776554332 011001222333334455555555542 33222233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 v~~ag~ 93 (241)
T PRK07454 88 INNAGM 93 (241)
T ss_pred EECCCc
Confidence 766543
No 349
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=89.39 E-value=2.1 Score=35.83 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=51.0
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHH----HcCCc---ccCCHHHHhh---cCcEEEEe-----cCChhHHHHHhcC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLA----KEGAN---MALSLSTLAS---GAEFIISM-----LPASQDVLDAYDG 67 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~----~~g~~---~~~s~~e~~~---~adivi~~-----v~~~~~~~~v~~~ 67 (286)
|+.|+..|++.|.+|++.|.+++.++... +.|+. ...+.+|+.. .-|+|+++ ||+|+.+ +..
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~---~~~ 146 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESF---LRA 146 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHH---HHH
Confidence 56889999999999999999988766543 22443 2334556654 56777654 5776543 322
Q ss_pred CccccccCCCCCEEEEcCCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~ 88 (286)
..+.++||.+++. ||+.
T Consensus 147 ---c~~lvkP~G~lf~-STin 163 (243)
T COG2227 147 ---CAKLVKPGGILFL-STIN 163 (243)
T ss_pred ---HHHHcCCCcEEEE-eccc
Confidence 3345677765554 5655
No 350
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.39 E-value=0.41 Score=42.51 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcE---EEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHDV---IVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.++||++ ....++.+.-+.+.-.| +...+...+..+++|+||+|+|.. ..+++... .+.
T Consensus 13 vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~~~------~~~ 85 (334)
T PRK14874 13 VGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYAPK------AAA 85 (334)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHHHH------HHh
Confidence 6888999999988853 55544433222222112 222221223347899999999975 44554432 234
Q ss_pred CCCEEEEcCCC
Q psy764 77 PGVIVIDSSTV 87 (286)
Q Consensus 77 ~g~ivid~st~ 87 (286)
.|..|||.|+.
T Consensus 86 ~G~~VIDlS~~ 96 (334)
T PRK14874 86 AGAVVIDNSSA 96 (334)
T ss_pred CCCEEEECCch
Confidence 67899999874
No 351
>PRK05993 short chain dehydrogenase; Provisional
Probab=89.31 E-value=1.3 Score=38.00 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|..+++.|++.|++|++.+|++++.+.+.+.+ .+++..-+.++.+++.++.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~-------------~~~~~~Dl~d~~~~~~~~~ 67 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAEG-------------LEAFQLDYAEPESIAALVA 67 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC-------------ceEEEccCCCHHHHHHHHH
Confidence 789999999999999999999988877665432 2334444555666666554
No 352
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.26 E-value=0.55 Score=43.06 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|.++|+.|.+.|++|+++|++++.........-....+.....+++|++|.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 688999999999999999998876432211000011233444557899988887543
No 353
>PRK08643 acetoin reductase; Validated
Probab=89.07 E-value=1.2 Score=37.45 Aligned_cols=76 Identities=20% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+++... +.+.-.+...+-.-+.++..+++++.. +.+...+=+.+
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 83 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAADK-------LSKDGGKAIAVKADVSDRDQVFAAVRQ---VVDTFGDLNVV 83 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998776555332 000001112222335666666666653 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 84 i~~ag~ 89 (256)
T PRK08643 84 VNNAGV 89 (256)
T ss_pred EECCCC
Confidence 776654
No 354
>PRK06270 homoserine dehydrogenase; Provisional
Probab=88.99 E-value=4.6 Score=35.97 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=54.5
Q ss_pred ccHHHHHHHHhC--------C--CcE-EEEcCC----------chHHHHHHHc-CC-c------ccCCHHHHhh--cCcE
Q psy764 2 ISTLKLFFLQFQ--------G--HDV-IVYDKN----------TDASQTLAKE-GA-N------MALSLSTLAS--GAEF 50 (286)
Q Consensus 2 ~G~~lA~~L~~~--------G--~~V-~~~dr~----------~~~~~~l~~~-g~-~------~~~s~~e~~~--~adi 50 (286)
||+.+++.|.++ | .+| .++|++ .+++..+.+. +. . ...++.++++ +.|+
T Consensus 13 VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~~~~Dv 92 (341)
T PRK06270 13 VGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLEVIRSVDADV 92 (341)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHHHhhccCCCE
Confidence 688888888765 3 453 355753 3333344332 21 1 1247788874 6799
Q ss_pred EEEecCChhH----HHHHhcCCccccccCCCCCEEEEcCCCCch--HHHHHHHHHHhcCCceE
Q psy764 51 IISMLPASQD----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQ--VPQTLSNLAREKQITFL 107 (286)
Q Consensus 51 vi~~v~~~~~----~~~v~~~~~~l~~~l~~g~ivid~st~~p~--~~~~~~~~~~~~g~~~~ 107 (286)
|+.|.|+... ..+. +...+..|+-||-.+. .|. ...++.+..+++|..+.
T Consensus 93 Vvd~T~s~~~~~~~a~~~------~~~aL~~GkhVVtaNK-~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 93 VVEATPTNIETGEPALSH------CRKALERGKHVVTSNK-GPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred EEECCcCcccccchHHHH------HHHHHHCCCEEEcCCc-HHHHhhHHHHHHHHHHcCCEEE
Confidence 9999986322 1222 2234567777774432 222 34566666666666543
No 355
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.97 E-value=1.2 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+++.+. ..+.-....++..-+.++..+++++.. +.+...+-..+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 88 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVADE-------INKAGGKAIGVAMDVTNEDAVNAGIDK---VAERFGSVDIL 88 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH-------HHhcCceEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776555432 000000112222334555566665543 33223344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (262)
T PRK13394 89 VSNAGI 94 (262)
T ss_pred EECCcc
Confidence 777654
No 356
>PRK05872 short chain dehydrogenase; Provisional
Probab=88.96 E-value=1.7 Score=37.74 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +. ..+++. .-+.+..+++.++.. +.+...+=
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-----------~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~i 86 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALAAELGG-----------DDRVLTVVADVTDLAAMQAAAEE---AVERFGGI 86 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-----------CCcEEEEEecCCCHHHHHHHHHH---HHHHcCCC
Confidence 79999999999999999999998887766442 10 122332 445666667766653 33333333
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++..+
T Consensus 87 d~vI~nAG~ 95 (296)
T PRK05872 87 DVVVANAGI 95 (296)
T ss_pred CEEEECCCc
Confidence 566666543
No 357
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=88.93 E-value=1.4 Score=36.54 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|+++|++|.+.+|++++.+.+... ..+ ..+++.+ .=+.++..+..++.+ +.+...+-+
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id 84 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEALAAE-------LRA--AGGEARVLVFDVSDEAAVRALIEA---AVEAFGALD 84 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHHHHHHH---HHHHhCCCC
Confidence 68999999999999999999998776544321 001 1122222 334455556666543 333233335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.||++...
T Consensus 85 ~vi~~ag~ 92 (246)
T PRK05653 85 ILVNNAGI 92 (246)
T ss_pred EEEECCCc
Confidence 67766543
No 358
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.91 E-value=1.1 Score=40.92 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 83 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid 83 (286)
..+++.|.+.|.+|.+||....... .. ....+.++.++++++|+|+++..++ ..+++-. +.+.+.+ +..+|+|
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~-~~~~~~~--~~~~~~~-~~~~v~D 408 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHD-EFKDLDL--EKIKDLM-KGKVVVD 408 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCH-HHhccCH--HHHHHhc-CCCEEEe
Confidence 3578899999999999998643321 11 1223578889999999999999975 4443211 0122222 3457888
Q ss_pred c
Q psy764 84 S 84 (286)
Q Consensus 84 ~ 84 (286)
+
T Consensus 409 ~ 409 (411)
T TIGR03026 409 T 409 (411)
T ss_pred C
Confidence 5
No 359
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=88.88 E-value=1.6 Score=38.51 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=38.1
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHH--HH---HH---cC----CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQ--TL---AK---EG----ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+|..++..|+ +|.++|+++++.+ .+ .. .+ +..+.+. +.+++||+||++.
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 78999999999996 8999999988542 11 11 11 2333566 5679999999977
No 360
>PRK12829 short chain dehydrogenase; Provisional
Probab=88.84 E-value=1.4 Score=37.19 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|+++..+.+.+..... +..++..=+.++..+..++.. +.+.+.+-+.|
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 90 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---------KVTATVADVADPAQVERVFDT---AVERFGGLDVL 90 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---------ceEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 789999999999999999999987766554321100 112233334455555555543 22223344666
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 91 i~~ag~~ 97 (264)
T PRK12829 91 VNNAGIA 97 (264)
T ss_pred EECCCCC
Confidence 6665443
No 361
>PRK06196 oxidoreductase; Provisional
Probab=88.81 E-value=1.3 Score=38.72 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. + .+..++-.=+.+..+++.++.. +.....+=+++
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~-l----------~~v~~~~~Dl~d~~~v~~~~~~---~~~~~~~iD~l 103 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREALAG-I----------DGVEVVMLDLADLESVRAFAER---FLDSGRRIDIL 103 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h----------hhCeEEEccCCCHHHHHHHHHH---HHhcCCCCCEE
Confidence 79999999999999999999998876655332 0 1123333345555566665543 22222223455
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 104 i~nAg 108 (315)
T PRK06196 104 INNAG 108 (315)
T ss_pred EECCC
Confidence 65543
No 362
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.60 E-value=1.4 Score=37.11 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+. +.+.-.+...+-.=+.++.+++.++.. +.....+=+.+
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------i~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~l 91 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAAAES-------LKGQGLSAHALAFDVTDHDAVRAAIDA---FEAEIGPIDIL 91 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCceEEEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998766554321 111000122232334555666666553 33323334566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 92 i~~ag~ 97 (255)
T PRK07523 92 VNNAGM 97 (255)
T ss_pred EECCCC
Confidence 665543
No 363
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.51 E-value=1.3 Score=37.35 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|.+.+|++++.+.+.+.- . +. .+...+-.-+.++.+++.++.. +.+...+=+++
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l-~------~~-~~~~~~~~Dv~d~~~~~~~~~~---~~~~~g~id~l 80 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKALKEL-K------EY-GEVYAVKADLSDKDDLKNLVKE---AWELLGGIDAL 80 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-H------hc-CCceEEEcCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 799999999999999999999987765553320 0 00 1122333345566667766653 33323333566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 81 i~naG 85 (259)
T PRK08340 81 VWNAG 85 (259)
T ss_pred EECCC
Confidence 66544
No 364
>PRK08267 short chain dehydrogenase; Provisional
Probab=88.48 E-value=1.6 Score=36.78 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc-CCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~-l~~g~i 80 (286)
||..+++.|+++|++|.+.+|++++.+.+...- . . ....++..-+.+..+++.++.+ +.+. ..+=++
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-~--~------~~~~~~~~D~~~~~~v~~~~~~---~~~~~~~~id~ 80 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALAAEL-G--A------GNAWTGALDVTDRAAWDAALAD---FAAATGGRLDV 80 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-c--C------CceEEEEecCCCHHHHHHHHHH---HHHHcCCCCCE
Confidence 789999999999999999999998877664421 0 0 1233444445666666666543 2221 122356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 7766544
No 365
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=88.43 E-value=3.7 Score=36.07 Aligned_cols=97 Identities=8% Similarity=0.076 Sum_probs=57.8
Q ss_pred cHHHHHHHHhCCCcE-EEEcCCc--hHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDV-IVYDKNT--DASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V-~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|+..++...+.|-+| -+.+... +... ..|+.++++..|+.+. .|+.+++||.+.....+.+. .+ ..-
T Consensus 42 g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~---~~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea----~~-aGI 113 (317)
T PTZ00187 42 GTFHTEQAIEYGTKMVGGVNPKKAGTTHL---KHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEA----IE-AEI 113 (317)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCceEe---cCCccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHH----HH-cCC
Confidence 556667777777754 3455544 2221 1378899999999987 99999999965444444432 11 111
Q ss_pred CCEEEEcCCCCchHHHHHHHHHH-hcCCceE
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAR-EKQITFL 107 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~-~~g~~~~ 107 (286)
..+||-++........++.+.+. ++|.+++
T Consensus 114 ~~~ViiteGfpe~d~~~l~~~~~~~~g~rli 144 (317)
T PTZ00187 114 PLVVCITEGIPQHDMVKVKHALLSQNKTRLI 144 (317)
T ss_pred CEEEEECCCCchhhHHHHHHHHhhcCCCEEE
Confidence 23455555555544556655554 3566655
No 366
>PRK05876 short chain dehydrogenase; Provisional
Probab=88.42 E-value=1.4 Score=37.75 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|+++|++|.+.+|++++.+++.+. +...-.+...+-.-+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~id~l 87 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQAVNH-------LRAEGFDVHGVMCDVRHREEVTHLADE---AFRLLGHVDVV 87 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEeCCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998766554321 000000122233344566667666653 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 88 i~nAg~ 93 (275)
T PRK05876 88 FSNAGI 93 (275)
T ss_pred EECCCc
Confidence 776543
No 367
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.37 E-value=1.4 Score=37.18 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.--.... -.+..++..-+.++.+++.++.. +.+...+=+.+
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 90 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----GARVLAVPADVTDAASVAAAVAA---AEEAFGPLDVL 90 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEEccCCCHHHHHHHHHH---HHHHhCCCcEE
Confidence 79999999999999999999998876655432100000 01122333345566666666653 33333333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 i~~ag~ 96 (260)
T PRK07063 91 VNNAGI 96 (260)
T ss_pred EECCCc
Confidence 776543
No 368
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.36 E-value=0.37 Score=42.88 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcE---EEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHDV---IVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.+++|++ ..+.++.+.-+.+.-.| ....+-..+.++++|++|.|.|.. ..+++.. ..+.
T Consensus 11 vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a~------~~~~ 83 (339)
T TIGR01296 11 VGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFAP------KAAK 83 (339)
T ss_pred HHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHHH------HHHH
Confidence 6889999999988863 34434333222222122 222221234458999999999975 4444433 1234
Q ss_pred CCCEEEEcCC
Q psy764 77 PGVIVIDSST 86 (286)
Q Consensus 77 ~g~ivid~st 86 (286)
.|..|||.|+
T Consensus 84 ~G~~VID~ss 93 (339)
T TIGR01296 84 CGAIVIDNTS 93 (339)
T ss_pred CCCEEEECCH
Confidence 6788999986
No 369
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.36 E-value=1.1 Score=38.10 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.. .+..++..=+.++.+++.++.. +.+...+-+++
T Consensus 16 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---------------~~~~~~~~D~~d~~~~~~~~~~---~~~~~g~~d~l 77 (270)
T PRK06179 16 IGRATAEKLARAGYRVFGTSRNPARAAPI---------------PGVELLELDVTDDASVQAAVDE---VIARAGRIDVL 77 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhcccc---------------CCCeeEEeecCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 79999999999999999999987654211 1233444455666677776653 43333444677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 78 i~~ag~ 83 (270)
T PRK06179 78 VNNAGV 83 (270)
T ss_pred EECCCC
Confidence 777654
No 370
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=88.30 E-value=1.4 Score=36.86 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+++|++++.+.+.+.- .+.-.+..++..=+.++.++..++.. +.+...+-..+
T Consensus 12 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~Dl~~~~~i~~~~~~---~~~~~~~id~v 81 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVADLNEETAKETAKEI-------NQAGGKAVAYKLDVSDKDQVFSAIDQ---AAEKFGGFDVM 81 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999876655443210 00001222333345666677666653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (254)
T TIGR02415 82 VNNAGV 87 (254)
T ss_pred EECCCc
Confidence 777654
No 371
>PRK06482 short chain dehydrogenase; Provisional
Probab=88.22 E-value=1.7 Score=37.06 Aligned_cols=73 Identities=14% Similarity=-0.027 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.. . .+..++-.-+.++.+++.++.. +.+...+=.+|
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 80 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKARY----G------DRLWVLQLDVTDSAAVRAVVDR---AFAALGRIDVV 80 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c------CceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776664321 0 1223333445555556665542 33222233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+++..
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 776543
No 372
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=88.17 E-value=1.4 Score=39.02 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=40.0
Q ss_pred HHHHHh-CCCcEEEEcCCchHHHHHHHcCCccc-----CCHHHHh-hcCcEEEEecCChhHHHHHhc
Q psy764 7 LFFLQF-QGHDVIVYDKNTDASQTLAKEGANMA-----LSLSTLA-SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 7 A~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~-~~adivi~~v~~~~~~~~v~~ 66 (286)
|.-+++ .|.+|+++||+++|.+.+.+.|+... ++..+.+ +..|+++.+++ +..+...+.
T Consensus 182 avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~ 247 (339)
T COG1064 182 AVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLK 247 (339)
T ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHH
Confidence 333444 78999999999999988888875332 1122222 33888888888 667666554
No 373
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=88.15 E-value=4.7 Score=35.15 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=66.2
Q ss_pred hCCCcEEEEc---CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 12 FQGHDVIVYD---KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 12 ~~G~~V~~~d---r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
+.+.+|+.+. .|+..+++|.+.|+...+++.++-+++-+||-+-.-+.++.+-+. .+|-.|||++=..
T Consensus 28 ~~~~~iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~g~~viDaTCP~ 98 (298)
T PRK01045 28 KYGAPIYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAK---------ERGLTVIDATCPL 98 (298)
T ss_pred hcCCCeEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCcc
Confidence 3355687773 689999999999999999988876676777777766666555543 2678899998888
Q ss_pred chHHHHHHHHHHhcCCceE
Q psy764 89 PQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~ 107 (286)
....+...+.+.+.|...+
T Consensus 99 V~k~~~~v~~~~~~Gy~vv 117 (298)
T PRK01045 99 VTKVHKEVARMSREGYEII 117 (298)
T ss_pred chHHHHHHHHHHhCCCEEE
Confidence 8888888888888875433
No 374
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.15 E-value=1.4 Score=37.29 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcE--EEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEF--IISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adi--vi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|++.+|++++.+...+. +.+...+.++ +..=+.++.+++.++.. +.+...+=+
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id 89 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAEAR-------LREKFPGARLLAARCDVLDEADVAAFAAA---VEARFGGVD 89 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999998876654322 1111111222 22335666666666553 332222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 90 ~li~~Ag~ 97 (265)
T PRK07062 90 MLVNNAGQ 97 (265)
T ss_pred EEEECCCC
Confidence 67776543
No 375
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=88.12 E-value=1.6 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|+.++.+.+.+. ..+.-....++-.-+.++.+++..+.. +.....+-+.+
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~d~v 84 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVAAD-------IRAKGGNAQAFACDITDRDSVDTAVAA---AEQALGPVDVL 84 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655321 111001122333334455555555542 32223333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|.+...
T Consensus 85 i~~ag~ 90 (250)
T TIGR03206 85 VNNAGW 90 (250)
T ss_pred EECCCC
Confidence 666543
No 376
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.08 E-value=1.2 Score=41.46 Aligned_cols=53 Identities=21% Similarity=0.129 Sum_probs=38.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~ 54 (286)
.|.+.|+.|.+.|++|+++|+.+.....+.+.|+.......+.+.++|+||.+
T Consensus 20 ~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 20 SGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred hHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 36778999999999999999876555556666776544223345689988864
No 377
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.94 E-value=3.2 Score=35.56 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~ 36 (286)
+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 132 vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 132 LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 466666666677876 88889888888777777753
No 378
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.93 E-value=1.3 Score=36.23 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~ 23 (286)
+|+.+|.+|++.|+ +++++|++
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999998 69999998
No 379
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=87.91 E-value=0.5 Score=41.27 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++...+...++.. .+++.++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 799999999999999999999877644333223221 1234556677888877653
No 380
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.77 E-value=2.6 Score=38.91 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchH----HHHHHHcCCcccCC--HHHHhhcCcEEEEecCCh---hHHHHHhcC-Cc---
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDA----SQTLAKEGANMALS--LSTLASGAEFIISMLPAS---QDVLDAYDG-SD--- 69 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~s--~~e~~~~adivi~~v~~~---~~~~~v~~~-~~--- 69 (286)
|.+.++.|.+.|++|++||.++.. ...+...++.+... ..+...++|+|+..-.-+ ..++..... .+
T Consensus 19 G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 19 GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHHHHHHcCCcEEe
Confidence 789999999999999999976654 22233345443321 225677899999874322 223332211 00
Q ss_pred --cccccC-CCCCEEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 70 --GILKHA-KPGVIVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 70 --~l~~~l-~~g~ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
.+.-.. .+..+|--+ |+....++.-+...+.+.|....-+...|.|.
T Consensus 99 dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 99 DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence 011112 133444444 44555566666777777787666555555444
No 381
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.74 E-value=1.6 Score=36.43 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ....-.+.+++..=+.++..++.++.. +.+...+-..|
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 88 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELAAA-------LEAAGGRAHAIAADLADPASVQRFFDA---AAAALGGLDGL 88 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998876654321 000001223333334555566666543 22222334567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (250)
T PRK12939 89 VNNAGI 94 (250)
T ss_pred EECCCC
Confidence 776544
No 382
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=87.73 E-value=3.7 Score=38.01 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=37.6
Q ss_pred cHH-HHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccC-CHHHHhhcCcEEEEec
Q psy764 3 STL-KLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMAL-SLSTLASGAEFIISML 55 (286)
Q Consensus 3 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adivi~~v 55 (286)
|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 555 89999999999999997653 34456666876643 2234566799888764
No 383
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.71 E-value=1.8 Score=35.86 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+. +.+. ...+++..=+.+..+++..+.. +.+...+=++|
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 86 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAAAE-------LNNK-GNVLGLAADVRDEADVQRAVDA---IVAAFGGLDVL 86 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH-------Hhcc-CcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655331 0000 1222333334555556665543 32222233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 87 i~~ag 91 (237)
T PRK07326 87 IANAG 91 (237)
T ss_pred EECCC
Confidence 66543
No 384
>PRK06720 hypothetical protein; Provisional
Probab=87.70 E-value=2 Score=34.09 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||.+++..|.++|++|.+++|+.+..+..
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 78999999999999999999987655433
No 385
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=87.64 E-value=1.7 Score=36.32 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++.+.+.+.. ...-.+..++..=+.++.+++.++.. +.+.+.+-+.|
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 82 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAAKVA-------TDAGGSVIYLVADVTKEDEIADMIAA---AAAEFGGLDIL 82 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCceEEEECCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 689999999999999999999987766654321 00001222333345566666665543 33323333556
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 83 i~~a~ 87 (255)
T TIGR01963 83 VNNAG 87 (255)
T ss_pred EECCC
Confidence 65543
No 386
>PRK09186 flagellin modification protein A; Provisional
Probab=87.54 E-value=1.7 Score=36.46 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|++.|++|.+.+|++++.+.+.+.=..... -...+++..-+.++.++..++.. +.....+=+++
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~---~~~~~~~id~v 87 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-----SKKLSLVELDITDQESLEEFLSK---SAEKYGKIDGA 87 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-----CCceeEEEecCCCHHHHHHHHHH---HHHHcCCccEE
Confidence 79999999999999999999998877655332000000 01122334455666677776653 32222333567
Q ss_pred EEcC
Q psy764 82 IDSS 85 (286)
Q Consensus 82 id~s 85 (286)
|++.
T Consensus 88 i~~A 91 (256)
T PRK09186 88 VNCA 91 (256)
T ss_pred EECC
Confidence 7664
No 387
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=87.52 E-value=0.4 Score=38.91 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=38.7
Q ss_pred HHHHHhCCCcEEEEcCCchHHHHHHH----cCCcccCCHHH-----HhhcCcEEEEec----CChhHHHHHhcCCccccc
Q psy764 7 LFFLQFQGHDVIVYDKNTDASQTLAK----EGANMALSLST-----LASGAEFIISML----PASQDVLDAYDGSDGILK 73 (286)
Q Consensus 7 A~~L~~~G~~V~~~dr~~~~~~~l~~----~g~~~~~s~~e-----~~~~adivi~~v----~~~~~~~~v~~~~~~l~~ 73 (286)
+.-|+++||+|+.||.++..++.+.+ .++.+.....+ .-..-|+|+..+ -.+.....++.. +.+
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~---m~~ 121 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIEN---MKA 121 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHH---HHH
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHH---HHh
Confidence 45689999999999999987765543 24332211111 113456766532 123445556553 555
Q ss_pred cCCCCCE
Q psy764 74 HAKPGVI 80 (286)
Q Consensus 74 ~l~~g~i 80 (286)
.+++|-.
T Consensus 122 ~~~pGG~ 128 (192)
T PF03848_consen 122 ATKPGGY 128 (192)
T ss_dssp TEEEEEE
T ss_pred hcCCcEE
Confidence 5666654
No 388
>PRK05569 flavodoxin; Provisional
Probab=87.40 E-value=11 Score=28.58 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred HhhcCcEEEEecCCh-------hHHHHHhcCCccccccCCCCCEEEEcCCC--C-chHHHHHHHHHHhcCCceEeccCCC
Q psy764 44 LASGAEFIISMLPAS-------QDVLDAYDGSDGILKHAKPGVIVIDSSTV--D-PQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 44 ~~~~adivi~~v~~~-------~~~~~v~~~~~~l~~~l~~g~ivid~st~--~-p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
.+.++|.|++..|+. ..++.++.. +.....+|+.++-.+|. . ......+.+.+...|+.++..
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~---l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~---- 117 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQ---FKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD---- 117 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHH---hhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee----
Confidence 456899999999952 245666653 22212256555444332 2 334556677777788776541
Q ss_pred CHHhhhcCceEEEec-CCHhhHHHHHHHHHHh
Q psy764 114 GTKAAQEATLTFMVG-GDKSSLEKAKPILKCM 144 (286)
Q Consensus 114 ~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~ 144 (286)
+.+ .+ -+++..+++.++-+.+
T Consensus 118 ---------~~~-~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 118 ---------LAV-NESPNKEELNSAKELGKKL 139 (141)
T ss_pred ---------EEE-ccCCCHHHHHHHHHHHHHH
Confidence 111 12 3566777777776554
No 389
>PRK08309 short chain dehydrogenase; Provisional
Probab=87.37 E-value=2.6 Score=33.75 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=51.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|.+.|++|.+.+|++++.+.+...-.. ......+-.-+.++.+++.++.+ ......+-.++
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~--------~~~i~~~~~Dv~d~~sv~~~i~~---~l~~~g~id~l 79 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT--------PESITPLPLDYHDDDALKLAIKS---TIEKNGPFDLA 79 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc--------CCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCeEE
Confidence 45679999999999999999998876665431100 11222333345666777776653 33322222344
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
+. .+.....+.+.+.+++.|+.
T Consensus 80 v~--~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 80 VA--WIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred EE--eccccchhhHHHHHHHHccC
Confidence 43 33334455555556555554
No 390
>PRK06101 short chain dehydrogenase; Provisional
Probab=87.32 E-value=1.8 Score=36.12 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|..+++.|+++|++|.+.+|++++.+.+.+.+. +...+..=+.++.+++..+..
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~ 67 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQSA-----------NIFTLAFDVTDHPGTKAALSQ 67 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEeeCCCHHHHHHHHHh
Confidence 6899999999999999999999888776654321 122333335566667766653
No 391
>PRK06057 short chain dehydrogenase; Provisional
Probab=87.30 E-value=2.6 Score=35.43 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ...++..-+.++.+++.++.. +.+...+=+.+
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~------------~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 83 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAAADEV------------GGLFVPTDVTDEDAVNALFDT---AAETYGSVDIA 83 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc------------CCcEEEeeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999987665543320 012344445555666666653 22222223566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 84 i~~ag 88 (255)
T PRK06057 84 FNNAG 88 (255)
T ss_pred EECCC
Confidence 66554
No 392
>PRK06138 short chain dehydrogenase; Provisional
Probab=87.22 E-value=1.6 Score=36.50 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.+..+...+.- . .. .+..++..-+.++.++++++.. +.+...+=+.|
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~-~~------~~~~~~~~D~~~~~~~~~~~~~---i~~~~~~id~v 85 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERVAAAI-A-AG------GRAFARQGDVGSAEAVEALVDF---VAARWGRLDVL 85 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH-h-cC------CeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999987665443221 0 00 1223344455666777776653 43333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 86 i~~ag~ 91 (252)
T PRK06138 86 VNNAGF 91 (252)
T ss_pred EECCCC
Confidence 777654
No 393
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=87.22 E-value=2 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|++.|++|.+.+|++++.+.+
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELA 49 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 79999999999999999999998776554
No 394
>PRK08589 short chain dehydrogenase; Validated
Probab=87.15 E-value=2.1 Score=36.55 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|++.+|+ ++.+.+.+. +.+.-.+...+.+=+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 86 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSETVDK-------IKSNGGKAKAYHVDISDEQQVKDFASE---IKEQFGRVDVL 86 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHH-------HHhcCCeEEEEEeecCCHHHHHHHHHH---HHHHcCCcCEE
Confidence 7999999999999999999998 554443221 000001233444445666666666653 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 87 i~~Ag~ 92 (272)
T PRK08589 87 FNNAGV 92 (272)
T ss_pred EECCCC
Confidence 666543
No 395
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=87.13 E-value=3.3 Score=32.40 Aligned_cols=97 Identities=15% Similarity=0.032 Sum_probs=55.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-CcccC-CH-HHHhhcCcEEEEecCChhHHHHHhcC---Cc------
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-ANMAL-SL-STLASGAEFIISMLPASQDVLDAYDG---SD------ 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-~~~~~-s~-~e~~~~adivi~~v~~~~~~~~v~~~---~~------ 69 (286)
+|.-.++.|.+.|++|++++ ++..+++.+.+ +.... .+ .+-++++|+||.+..++ .+...+.. ..
T Consensus 24 va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~-e~N~~i~~~a~~~~~vn~~ 100 (157)
T PRK06719 24 IAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH-AVNMMVKQAAHDFQWVNVV 100 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH-HHHHHHHHHHHHCCcEEEC
Confidence 45667888899999999996 44444554432 22211 11 22357899999998865 33332211 00
Q ss_pred -------cccc-cCCCCCEEEEcCC--CCchHHHHHHHHHHh
Q psy764 70 -------GILK-HAKPGVIVIDSST--VDPQVPQTLSNLARE 101 (286)
Q Consensus 70 -------~l~~-~l~~g~ivid~st--~~p~~~~~~~~~~~~ 101 (286)
-..+ ..+.|.+.|-.|| .+|..++++.+.+++
T Consensus 101 d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 101 SDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 0111 1344556655554 468888777776654
No 396
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.09 E-value=2.6 Score=39.63 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=58.8
Q ss_pred HHHHHHhCCCcEEEEcC----CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDK----NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr----~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.++.|.+.||+|.+=.- ..=.=++..+.|+++.++. |+. +||+|+- |..|.. ++ .+.+++|+++
T Consensus 22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~~diilk-V~~P~~-~e--------~~~l~~g~~l 89 (509)
T PRK09424 22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-QSDIILK-VNAPSD-DE--------IALLREGATL 89 (509)
T ss_pred HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-cCCEEEE-eCCCCH-HH--------HHhcCCCCEE
Confidence 46778999999886421 1001134567799988764 777 7998873 443322 22 2346789998
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+-. ..|....++.+.+.++++..++.
T Consensus 90 i~~--l~p~~~~~l~~~l~~~~it~ia~ 115 (509)
T PRK09424 90 VSF--IWPAQNPELLEKLAARGVTVLAM 115 (509)
T ss_pred EEE--eCcccCHHHHHHHHHcCCEEEEe
Confidence 854 44555677888888888877764
No 397
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=87.06 E-value=7.1 Score=33.73 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCcEEEEc---CCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 14 GHDVIVYD---KNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 14 G~~V~~~d---r~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
|.+|+.+. .|+..+++|.+.|+.+. +++.++-+++-+||-+=..+..+.+-+. ..|-.|||.+=..
T Consensus 31 ~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~g~~viDaTCP~ 101 (281)
T PRK12360 31 GKKIYTLGPLIHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLK---------DKGLEIIDATCPF 101 (281)
T ss_pred CCCeEEecCCcCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCcc
Confidence 66788873 68999999999999999 8888876566677766665555555443 2577899998888
Q ss_pred chHHHHHHHHHHhcCCceE
Q psy764 89 PQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~ 107 (286)
....+...+.+.+.|...+
T Consensus 102 V~k~~~~v~~~~~~Gy~iv 120 (281)
T PRK12360 102 VKKIQNIVEEYYNKGYSII 120 (281)
T ss_pred chHHHHHHHHHHhCCCEEE
Confidence 8888888888888875433
No 398
>PRK07035 short chain dehydrogenase; Provisional
Probab=87.03 E-value=1.9 Score=36.15 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+.- .+.-.....+-.-+.+..+++.++.. +.+...+=+++
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 89 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI-------VAAGGKAEALACHIGEMEQIDALFAH---IRERHGRLDIL 89 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999987766553320 11001112233334555566665543 33323333577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 90 i~~ag~ 95 (252)
T PRK07035 90 VNNAAA 95 (252)
T ss_pred EECCCc
Confidence 766653
No 399
>PRK08263 short chain dehydrogenase; Provisional
Probab=86.96 E-value=2.1 Score=36.46 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+.. -....++-.-+.++.+++.++.. +.+...+=+.+
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 81 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAEKY----------GDRLLPLALDVTDRAAVFAAVET---AVEHFGRLDIV 81 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------cCCeeEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988776654321 01122233334555566665543 33323233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (275)
T PRK08263 82 VNNAGY 87 (275)
T ss_pred EECCCC
Confidence 666543
No 400
>PRK06194 hypothetical protein; Provisional
Probab=86.83 E-value=1.9 Score=36.92 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|++.+|+.++.++..+. ... .+.++.++ =+.+..+++.++.+ +.+...+=+
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~d~~~~~~~~~~---~~~~~g~id 85 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAVAE-------LRA--QGAEVLGVRTDVSDAAQVEALADA---ALERFGAVH 85 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-------HHh--cCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 78999999999999999999998766554321 000 02223222 24455566666553 332222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+||++...
T Consensus 86 ~vi~~Ag~ 93 (287)
T PRK06194 86 LLFNNAGV 93 (287)
T ss_pred EEEECCCC
Confidence 67776544
No 401
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.78 E-value=3.6 Score=38.03 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch--HHHHHHH--cCCcccC--CHHHHhhcCcEEEEecCCh---hHHHHHhcCC----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD--ASQTLAK--EGANMAL--SLSTLASGAEFIISMLPAS---QDVLDAYDGS---- 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~--~g~~~~~--s~~e~~~~adivi~~v~~~---~~~~~v~~~~---- 68 (286)
.|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.+-.-+ ..+.......
T Consensus 17 sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 17 TGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRAAAAMGIEVI 96 (448)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHHHHHCCCcEE
Confidence 477899999999999999997643 2344655 2665532 2345567899887764222 2222221110
Q ss_pred --ccccccCCCCCEEEEcCCCCch-HHHHHHHHHHhcCCceEeccCCCCH
Q psy764 69 --DGILKHAKPGVIVIDSSTVDPQ-VPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 69 --~~l~~~l~~g~ivid~st~~p~-~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
-.++..+.+.++|--+.|-.-. ++.-+...+...|..+.-+...|.|
T Consensus 97 ~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 97 GDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred EHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 0122122234555555554444 4444555666666555544444443
No 402
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.54 E-value=4.7 Score=37.66 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-HHcCCcccC--CHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-AKEGANMAL--SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~adivi~~v 55 (286)
.|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+-
T Consensus 26 sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 26 SGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 47789999999999999999887665443 444776643 2345567889888763
No 403
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=86.53 E-value=1.2 Score=39.05 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|.-+.+.|.++.+ ++.....+..+ .. .+..+..+++|++|+|+|+. ...++... + ...|..
T Consensus 14 ~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~-~s~~~~~~---~---~~~g~~ 76 (313)
T PRK11863 14 TGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDD-AAREAVAL---I---DNPATR 76 (313)
T ss_pred HHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHH-HHHHHHHH---H---HhCCCE
Confidence 57788888877664 33333222211 11 23345567899999999975 44444331 2 246889
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|||.|+.
T Consensus 77 VIDlSad 83 (313)
T PRK11863 77 VIDASTA 83 (313)
T ss_pred EEECChh
Confidence 9999973
No 404
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.46 E-value=2.1 Score=35.73 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|+++..+.+.+. ..+.-.....+..-+.+..+++.++.. +.+...+=++|
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 87 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERVAKQ-------IVADGGTAIAVQVDVSDPDSAKAMADA---TVSAFGGIDYL 87 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999997765544321 000000122333344556666666553 32223333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++.+.
T Consensus 88 i~~ag~ 93 (250)
T PRK07774 88 VNNAAI 93 (250)
T ss_pred EECCCC
Confidence 777664
No 405
>PLN00016 RNA-binding protein; Provisional
Probab=86.39 E-value=4.7 Score=36.32 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=23.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
+|+.+++.|+++||+|++.+|++..
T Consensus 68 iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 68 IGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred EhHHHHHHHHHCCCEEEEEecCCcc
Confidence 7999999999999999999998764
No 406
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.37 E-value=2.3 Score=35.66 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|++.|++|++.+|++++.+.+.+. +.+ ...++.+ .-+.++..++.++.. +.+...+=.
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id 80 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAKLE-------IEQ--FPGQVLTVQMDVRNPEDVQKMVEQ---IDEKFGRID 80 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHHHHHHHHHH---HHHHhCCcc
Confidence 79999999999999999999998766554321 000 0122222 234566666666653 332222335
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
.+|++..
T Consensus 81 ~lI~~ag 87 (252)
T PRK07677 81 ALINNAA 87 (252)
T ss_pred EEEECCC
Confidence 6676543
No 407
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=86.29 E-value=26 Score=31.87 Aligned_cols=255 Identities=16% Similarity=0.169 Sum_probs=140.9
Q ss_pred HHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----C--------------------CcccCCHHHHhhcCcEEEEecCCh
Q psy764 5 LKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----G--------------------ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 5 ~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g--------------------~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
-+|..|.+.+. +|-+.+|...+.+++-+. + -....+.+++..+=|.+|+|+|.
T Consensus 15 QLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavta- 93 (429)
T PF10100_consen 15 QLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTA- 93 (429)
T ss_pred HHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEech-
Confidence 46666666654 688899987766555331 1 13456777888889999999997
Q ss_pred hHHHHHhcCCccccc-cCCCCCEEEEcCCCCchHHHHHHHHHHhcC--CceEec-------cCCCC-HH-----hhhcCc
Q psy764 59 QDVLDAYDGSDGILK-HAKPGVIVIDSSTVDPQVPQTLSNLAREKQ--ITFLDA-------PVSGG-TK-----AAQEAT 122 (286)
Q Consensus 59 ~~~~~v~~~~~~l~~-~l~~g~ivid~st~~p~~~~~~~~~~~~~g--~~~~~~-------pv~g~-~~-----~a~~g~ 122 (286)
++-.+|+.+ |-. .+..=+.||-.|..-... .-+...+.+.+ +.+++- -.+.+ ++ .+.+..
T Consensus 94 DAY~~VL~q---l~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k 169 (429)
T PF10100_consen 94 DAYLDVLQQ---LPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK 169 (429)
T ss_pred HHHHHHHHh---cCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhhce
Confidence 477888875 332 233334455444332221 12233344333 233321 11111 11 122233
Q ss_pred eEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcchHHHH-------------------------------HH-----H
Q psy764 123 LTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVA-------------------------------KL-----C 163 (286)
Q Consensus 123 l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~-------------------------------Kl-----~ 163 (286)
+++|. +...+++...+|+.++-++..+..+=.|+.- |+ +
T Consensus 170 --iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPI 247 (429)
T PF10100_consen 170 --IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPI 247 (429)
T ss_pred --EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCC
Confidence 44443 3567788889999998555444322122111 10 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc--CCCcc-----cccccCCCCCccc--------------cC--C
Q psy764 164 NNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS--SGRCW-----SSEVYNPVPGVLS--------------NV--P 220 (286)
Q Consensus 164 ~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~--~~~s~-----~~~~~~~~~~~~~--------------~~--~ 220 (286)
...++.-+....-|++.+..++|+++=.+++.++.. +-... --+.+...+.+-+ +. +
T Consensus 248 T~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiLIDPFS~P 327 (429)
T PF10100_consen 248 TPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSILIDPFSEP 327 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhheeCCCCCC
Confidence 223344456678999999999999999999998873 11000 0011111111110 00 0
Q ss_pred -CCCCCCCCc----------------cchhH----HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 221 -ASNNYNGGF----------------KISLL----AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 221 -~~~~~~~~f----------------~~~~~----~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
.+|.| ..| .+..+ ..-++.+..+|+.+|+++|.++...+.|+....
T Consensus 328 D~~GrY-FDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 328 DEQGRY-FDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred CCCCCc-ccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 01111 012 12223 223577899999999999999999999998775
No 408
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=86.24 E-value=2.6 Score=37.61 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhC-CCcEEE-EcCCchHHHHHHH-------------------cCCcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQ-GHDVIV-YDKNTDASQTLAK-------------------EGANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||..+++.+.++ +++|.+ +|++++....+.+ .++.+..++.++..++|+||.|.|.. .
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~-~ 90 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGG-V 90 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCch-h
Confidence 788888877654 456554 4767655544333 13344556777777888888888754 3
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
..+... .++..|+.+|+.+..
T Consensus 91 ~~e~a~------~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 91 GAKNKE------LYEKAGVKAIFQGGE 111 (341)
T ss_pred hHHHHH------HHHHCCCEEEEcCCC
Confidence 333322 234456777776653
No 409
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.23 E-value=1.8 Score=36.01 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|++.|++|++.+|++++.+.+... ..+ ..++.+. =+.++.+++.++.. +.+...+=+
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~---~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d 83 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVAAE-------ILA---GGRAIAVAADVSDEADVEAAVAA---ALERFGSVD 83 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------Hhc---CCeEEEEECCCCCHHHHHHHHHH---HHHHhCCCC
Confidence 78999999999999999999998876655332 000 1222222 23555566665543 323233335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.||++...
T Consensus 84 ~vi~~ag~ 91 (251)
T PRK07231 84 ILVNNAGT 91 (251)
T ss_pred EEEECCCC
Confidence 67776654
No 410
>PLN02253 xanthoxin dehydrogenase
Probab=86.14 E-value=2 Score=36.63 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|+++..+.+.+. .. . -.+..++-.=+.++++++.++.. +.+...+=+++
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~-~~--~-----~~~~~~~~~Dl~d~~~~~~~~~~---~~~~~g~id~l 98 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDS-LG--G-----EPNVCFFHCDVTVEDDVSRAVDF---TVDKFGTLDIM 98 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-hc--C-----CCceEEEEeecCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999987766554332 00 0 01223344445666666666653 33323233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 99 i~~Ag 103 (280)
T PLN02253 99 VNNAG 103 (280)
T ss_pred EECCC
Confidence 66654
No 411
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.11 E-value=1.9 Score=36.82 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++++.|++.|++|.+.+|+.++.+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999987665543
No 412
>PRK06172 short chain dehydrogenase; Provisional
Probab=86.08 E-value=2.7 Score=35.22 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|++++.+.+.
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999987765543
No 413
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=86.02 E-value=2.7 Score=34.42 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=56.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|+.++++|++.|. +++++|.+.-....+... |-.-+....+-++ +.++-+.+.+..-.-+.
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~------- 104 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAEN------- 104 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHH-------
Confidence 68999999999997 899999884322222211 2111111122222 23444444432111011
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
+...+..-++||+++ ..+..-..+.+.+.+++..++.+-+.|
T Consensus 105 ~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 105 LELLINNVDLVLDCT-DNFATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred HHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111233446888875 445555667777888888888865544
No 414
>PRK07856 short chain dehydrogenase; Provisional
Probab=86.02 E-value=1.8 Score=36.38 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=22.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||..+++.|++.|++|++.+|++++
T Consensus 18 IG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 18 IGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhh
Confidence 7899999999999999999998764
No 415
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.00 E-value=2.3 Score=39.50 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=38.6
Q ss_pred ccHH-HHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccC-CHHHHhhcCcEEEEec
Q psy764 2 ISTL-KLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMAL-SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adivi~~v 55 (286)
.|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 18 sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 18 IGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred hhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 4667 79999999999999997643 34456666776642 2345567899888765
No 416
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=85.95 E-value=2.9 Score=34.86 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=42.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH--HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA--SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~--~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|.+.+|++.. .+.+.+.+ .....+..-+.++.+++.++.. +.+...+=.
T Consensus 17 IG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d 82 (248)
T TIGR01832 17 LGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALG-----------RRFLSLTADLSDIEAIKALVDS---AVEEFGHID 82 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcC-----------CceEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 7999999999999999999987521 11121111 1223444455666666666553 322223335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.+|++...
T Consensus 83 ~li~~ag~ 90 (248)
T TIGR01832 83 ILVNNAGI 90 (248)
T ss_pred EEEECCCC
Confidence 67766543
No 417
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=85.93 E-value=1.7 Score=37.96 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH---HHHHc-----CC-----cc--cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ---TLAKE-----GA-----NM--ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~---~l~~~-----g~-----~~--~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|+++||+|.+.+|+.+... .+... .+ .. ..+..++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 799999999999999999988765432 22111 11 11 1235566778898887653
No 418
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=85.93 E-value=1.4 Score=37.16 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=25.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|+.+++.|+++||+|++..|++++...+
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 78999999999999999999998876544
No 419
>PLN02650 dihydroflavonol-4-reductase
Probab=85.82 E-value=1.6 Score=38.72 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----C-----------CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----G-----------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+++.|+++|++|.+.+|++++...+... + +.-..+..++++++|+||-+-
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 79999999999999999998887654433211 1 111124556777888887665
No 420
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.81 E-value=2.8 Score=35.69 Aligned_cols=73 Identities=8% Similarity=-0.044 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc---hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT---DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~---~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|+++|++|.+.+|+. +.++.+.... ..+..+-+=+.++++++.++.. +.+...+=
T Consensus 20 IG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~i 85 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL-----------GSDIVLPCDVAEDASIDAMFAE---LGKVWPKF 85 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc-----------CCceEeecCCCCHHHHHHHHHH---HHhhcCCC
Confidence 78999999999999999888873 2223332211 0111222334566777777653 33322233
Q ss_pred CEEEEcCCCC
Q psy764 79 VIVIDSSTVD 88 (286)
Q Consensus 79 ~ivid~st~~ 88 (286)
+++|++....
T Consensus 86 D~linnAg~~ 95 (262)
T PRK07984 86 DGFVHSIGFA 95 (262)
T ss_pred CEEEECCccC
Confidence 5777776543
No 421
>PRK08177 short chain dehydrogenase; Provisional
Probab=85.76 E-value=1.5 Score=36.23 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 789999999999999999999987765543
No 422
>PRK06949 short chain dehydrogenase; Provisional
Probab=85.72 E-value=3 Score=34.95 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|++.+|++++.+.+.
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 50 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELR 50 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988776654
No 423
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=85.69 E-value=1.6 Score=38.32 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=39.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH----c-------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK----E-------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~----~-------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+..|. ++.++|+++++++..+. . .+..+.++++ +++||+||++...
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 79999999988876 79999998876533221 1 1232356665 7899999997653
No 424
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=85.68 E-value=1.8 Score=40.03 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCch--HHHHHHHcCCccc--CCHHHHhhcCcEEEEec
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTD--ASQTLAKEGANMA--LSLSTLASGAEFIISML 55 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~e~~~~adivi~~v 55 (286)
++||+.|.+.|++|+++|.++. ..+.+.+.|++.. .+.....+++|+||.+-
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 68 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGN 68 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECC
Confidence 5789999999999999997653 2335666687664 34445455799887654
No 425
>PLN02780 ketoreductase/ oxidoreductase
Probab=85.42 E-value=0.91 Score=40.03 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++|+.|+++|++|.+++|++++.+.+.
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~ 94 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVS 94 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 799999999999999999999998876654
No 426
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=85.35 E-value=8.7 Score=33.06 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=66.4
Q ss_pred HHhCCCcEEEEc---CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 10 LQFQGHDVIVYD---KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 10 L~~~G~~V~~~d---r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
|.+.|-+|++.. .|+...+.|.+.|+.+.+.+.++=++.-+||.+-.-++++++-+. .+|-.++|.+-
T Consensus 27 l~~~g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~---------~r~l~v~DATC 97 (294)
T COG0761 27 LEEYGAPIYVRHEIVHNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAK---------ERGLKVIDATC 97 (294)
T ss_pred HHHcCCCeEEEeccccCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHH---------HCCCEEEecCC
Confidence 344577877763 577889999999988888888877777778887777777776654 36778999877
Q ss_pred CCchHHHHHHHHHHhcCCceE
Q psy764 87 VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 87 ~~p~~~~~~~~~~~~~g~~~~ 107 (286)
..........+...+.|...+
T Consensus 98 PlVtKvh~~v~~~~~~G~~iI 118 (294)
T COG0761 98 PLVTKVHKEVERYAREGYEII 118 (294)
T ss_pred CcchHHHHHHHHHHhCCCEEE
Confidence 777777777777777775544
No 427
>PRK06500 short chain dehydrogenase; Provisional
Probab=85.08 E-value=3.1 Score=34.63 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 789999999999999999999987665543
No 428
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.04 E-value=3.8 Score=36.64 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=49.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH-cCCcccCCHHH---------Hh--hcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK-EGANMALSLST---------LA--SGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~-~g~~~~~s~~e---------~~--~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||...+..+...|. +|++.|++++|.+..++ .|.....+..+ .- ..+|++|-|+..+..+.+.+.
T Consensus 180 IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~-- 257 (350)
T COG1063 180 IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALE-- 257 (350)
T ss_pred HHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHH--
Confidence 56666555666674 78888999999988877 45443332211 11 248888888886655555443
Q ss_pred ccccccCCCCCEEEEcCCCCch
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~ 90 (286)
.++++-.++..+...+.
T Consensus 258 -----~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 258 -----ALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----HhcCCCEEEEEeccCCc
Confidence 34555555555554333
No 429
>PRK05875 short chain dehydrogenase; Provisional
Probab=84.98 E-value=1.7 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 789999999999999999999987665543
No 430
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=84.97 E-value=0.79 Score=37.85 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=35.0
Q ss_pred ccHHHHHHH--HhCCCcEEE-EcCCchHHHHHHHcC--CcccCCHHHHhhc--CcEEEEecCChh
Q psy764 2 ISTLKLFFL--QFQGHDVIV-YDKNTDASQTLAKEG--ANMALSLSTLASG--AEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L--~~~G~~V~~-~dr~~~~~~~l~~~g--~~~~~s~~e~~~~--adivi~~v~~~~ 59 (286)
+|..+++.+ ...|+++.+ +|+++++..... .| +...+++.+.+++ .|++++|+|+..
T Consensus 95 iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 95 LGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred HHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 455666542 245777665 588877653222 12 2233456777654 999999999754
No 431
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=84.89 E-value=10 Score=30.77 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCCh-----hHHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPAS-----QDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~-----~~~~~v~~~~~~l~~~l~~ 77 (286)
..+..+.++|++|..+|...-..+.+.... ........+.++++|.||++.|.. ..++..++. +......
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~---l~~~~l~ 98 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDL---LPERALE 98 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHh---CChhhhC
Confidence 344555668999988876533333332211 112223445677999999999943 346666653 2112234
Q ss_pred CCEEEEcC-CCCchHHHHHH----HHHHhcCCceEeccCCCCHHhhh-cCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSS-TVDPQVPQTLS----NLAREKQITFLDAPVSGGTKAAQ-EATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~s-t~~p~~~~~~~----~~~~~~g~~~~~~pv~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
|+.+.-.+ +..+.....+. ..+...+...+..+++....... ... .-.+ |++..++++.+++.+-
T Consensus 99 ~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~~~~~~~~~~~~~d~-~~~~--d~~~~~rl~~~~~~~~ 169 (191)
T PRK10569 99 HKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHH-QPQF--TPNLQTRLDEALETFW 169 (191)
T ss_pred CCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCceEEEechhhhcccc-cccc--CHHHHHHHHHHHHHHH
Confidence 55444333 34454443332 33334444444333333222211 000 0111 6666677766666663
No 432
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.78 E-value=3.8 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcC---CchHHHHHHHcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK---NTDASQTLAKEGANM 37 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr---~~~~~~~l~~~g~~~ 37 (286)
||...+..+...|.+|++.+| ++++.+.+.+.|+..
T Consensus 184 vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 184 IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 456666666667888888887 567777666667543
No 433
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=84.66 E-value=4.8 Score=37.86 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHhCCCcEEEEcC----CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDK----NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr----~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.++.|.+.||+|.+=.- ..=.-+...+.|+++.++ .++ .+||+|+ .|..|.. ++ .+.+++|+++
T Consensus 21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~-~~adiIl-kV~~P~~-~e--------~~~l~~g~tl 88 (511)
T TIGR00561 21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDG-TLF-WQSDIIL-KVNAPSD-AE--------IAELPAGKAL 88 (511)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cch-hcCCEEE-EeCCCCH-HH--------HHhcCCCCEE
Confidence 46788999999886421 000113456679999877 444 4789766 4544422 22 2347789999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+-. ..|....++.+.+.++++..++.
T Consensus 89 i~~--l~p~~n~~ll~~l~~k~it~ia~ 114 (511)
T TIGR00561 89 VSF--IWPAQNPELMEKLAAKNITVLAM 114 (511)
T ss_pred EEE--cCccCCHHHHHHHHHcCCEEEEe
Confidence 855 44655677888888888877764
No 434
>PRK05854 short chain dehydrogenase; Provisional
Probab=84.64 E-value=2.4 Score=37.15 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+|+.|+++|++|++.+|+.++.+++.
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766553
No 435
>PRK06398 aldose dehydrogenase; Validated
Probab=84.63 E-value=1.8 Score=36.54 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
||..+++.|++.|++|++.+|+.+
T Consensus 18 IG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 18 IGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCcc
Confidence 799999999999999999998864
No 436
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=84.59 E-value=2.4 Score=38.49 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHh
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
..++..|.+.|.+|.+||.--+... -.++..++++.++++++|.|++..-++ .++.+-
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAE-ELKDVA 376 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcH-HHHhhh
Confidence 4678899999999999998643332 337889999999999999999988874 666643
No 437
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=84.51 E-value=2 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHH----Hc------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+..+. ++.++|++.++++..+ .. ..++..+.-+.+++||+||++-..
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 79999999988886 7999999887654332 11 133444445778999999998764
No 438
>PRK08251 short chain dehydrogenase; Provisional
Probab=84.29 E-value=2.8 Score=34.95 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|+++|++|.+.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999988766553
No 439
>PRK05884 short chain dehydrogenase; Provisional
Probab=84.28 E-value=2.7 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=27.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|++.|++|++.+|++++.+.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 7999999999999999999999887766543
No 440
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.24 E-value=0.96 Score=39.16 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=36.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH------HcCCcccCCHHHHhhcC-cEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA------KEGANMALSLSTLASGA-EFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~------~~g~~~~~s~~e~~~~a-divi~~v~ 56 (286)
+|+.++..|.++||+|.+.+|...+..... .....-.+...+.++.. |.||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 12 IGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 799999999999999999999877654322 00111113344455566 88877664
No 441
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.15 E-value=5.3 Score=35.34 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 36 (286)
+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus 181 vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 181 IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 45556665666787 588899999988877777754
No 442
>PRK05717 oxidoreductase; Validated
Probab=84.10 E-value=3.5 Score=34.62 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- -..+..+-.=+.++.+++..+.. +.+...+=.++
T Consensus 22 IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 88 (255)
T PRK05717 22 IGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL----------GENAWFIAMDVADEAQVAAGVAE---VLGQFGRLDAL 88 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc----------CCceEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999877655543210 01122233334555555555442 33222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (255)
T PRK05717 89 VCNAAI 94 (255)
T ss_pred EECCCc
Confidence 776543
No 443
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.09 E-value=2 Score=37.58 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH---H-cC-----------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA---K-EG-----------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~-~g-----------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|++.|++|.+..|++++.+... . .+ +.-..+..+++++.|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 799999999999999998888765433221 1 11 1112234566677888887764
No 444
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.03 E-value=2.6 Score=35.49 Aligned_cols=75 Identities=17% Similarity=0.090 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh--hcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~--~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+. +.+.. ....++-.-+.++.++..++.. +.+...+-+
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~~~id 83 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVAQE-------INAEYGEGMAYGFGADATSEQSVLALSRG---VDEIFGRVD 83 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhcCCceeEEEEccCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999997765544321 00000 1233444445566666666543 322222335
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
.+|++..
T Consensus 84 ~vv~~ag 90 (259)
T PRK12384 84 LLVYNAG 90 (259)
T ss_pred EEEECCC
Confidence 6666543
No 445
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.95 E-value=2.7 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=26.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|.+++|+++..+.+.
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENLL 44 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999988766554
No 446
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=83.94 E-value=4.5 Score=34.71 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|+...+.+++.|.++ +-..+|.+.-.. -.|..++++.+|+++ ++|+-++.||.+.+.+.+++. +-..+ ..
T Consensus 20 ~gtfh~~~~l~yGt~~-V~GvtPgkgG~~-~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EA---ida~i--~l 92 (293)
T COG0074 20 QGTFHTEQMLAYGTKI-VGGVTPGKGGQT-ILGLPVFNTVEEAVKETGANASVIFVPPPFAADAILEA---IDAGI--KL 92 (293)
T ss_pred cchHHHHHHHHhCCce-eecccCCCCceE-EcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHH---HhCCC--cE
Confidence 5777777777777752 233444432111 125778889999886 589999999988887877763 21111 13
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+++-+=.+.+....++.+.+++++...+
T Consensus 93 iv~ITEgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 93 VVIITEGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 4444456777888899999988886666
No 447
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.93 E-value=4.3 Score=34.69 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=21.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
||.++|+.|+++|++|.+.+|+.+
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchH
Confidence 799999999999999999988754
No 448
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.91 E-value=3.7 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|+....+.+.+.. . .....+-+=+.++++++++++. +.+...+=+++
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~----~------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~iD~l 87 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV----D------EEDLLVECDVASDESIERAFAT---IKERVGKIDGI 87 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc----c------CceeEEeCCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999998843222222211 0 0112222224566677776653 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 88 v~nAg~ 93 (252)
T PRK06079 88 VHAIAY 93 (252)
T ss_pred EEcccc
Confidence 665543
No 449
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.88 E-value=4.1 Score=34.46 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+++.+. ..+.-.+..++-.-+.+..+++.++.. +.+...+=..+
T Consensus 22 iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~l 91 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFNDINQELVDKGLAA-------YRELGIEAHGYVCDVTDEDGVQAMVSQ---IEKEVGVIDIL 91 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEcCCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 78999999999999999999998776554321 000000122233334566666666653 33333333556
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 92 i~~ag 96 (265)
T PRK07097 92 VNNAG 96 (265)
T ss_pred EECCC
Confidence 66544
No 450
>PRK09242 tropinone reductase; Provisional
Probab=83.83 E-value=1.3 Score=37.35 Aligned_cols=76 Identities=16% Similarity=0.034 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|+.+..+.+.+.- .+...+.++.++ =+.++.+++..+.. +.+...+=+
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id 90 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQARDEL-------AEEFPEREVHGLAADVSDDEDRRAILDW---VEDHWDGLH 90 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 789999999999999999999987766543221 111112233333 23445555555543 333333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.+|++...
T Consensus 91 ~li~~ag~ 98 (257)
T PRK09242 91 ILVNNAGG 98 (257)
T ss_pred EEEECCCC
Confidence 77777654
No 451
>PRK07832 short chain dehydrogenase; Provisional
Probab=83.82 E-value=3.5 Score=35.05 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..+++.|++.|++|.+++|++++.+.+.+. +...- .....+..=+.++..++.++.. +.+...+=++
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~ 81 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQTVAD-------ARALGGTVPEHRALDISDYDAVAAFAAD---IHAAHGSMDV 81 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCCcceEEEeeCCCHHHHHHHHHH---HHHhcCCCCE
Confidence 68999999999999999999998766554321 00000 0011122335556666666553 3333333357
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 82 lv~~ag~ 88 (272)
T PRK07832 82 VMNIAGI 88 (272)
T ss_pred EEECCCC
Confidence 7776643
No 452
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=83.75 E-value=11 Score=32.47 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred hCCCcEEEEc---CCchHHHHHHHcCC-cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 12 FQGHDVIVYD---KNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 12 ~~G~~V~~~d---r~~~~~~~l~~~g~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
+.|.+|+.+. .|+..+++|.+.|+ ...+++.++-+++-+||-+=.-+.++.+-+. .+|-.+||.+=.
T Consensus 27 ~~~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~gl~viDaTCP 97 (280)
T TIGR00216 27 ESGKPVYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELE---------KKGLEVIDATCP 97 (280)
T ss_pred hcCCCeEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCc
Confidence 3366788874 68999999999996 6667887776566677776666655555443 257789999888
Q ss_pred CchHHHHHHHHHHhcCCceE
Q psy764 88 DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~ 107 (286)
.....+...+.+.+.|...+
T Consensus 98 ~V~kv~~~v~~~~~~Gy~ii 117 (280)
T TIGR00216 98 LVTKVHNAVKKYAKEGYHVI 117 (280)
T ss_pred ccHHHHHHHHHHHhCCCEEE
Confidence 88888888888888875433
No 453
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=83.68 E-value=1 Score=39.96 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEE---EEcCCchHHH-HHHHcC--CcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVI---VYDKNTDASQ-TLAKEG--ANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~---~~dr~~~~~~-~l~~~g--~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|..+.+.|.+.+|++. .. .+.+.+. .+.-.| ..+.+ +..+ ++++|++|+|+|.. ....+... .
T Consensus 16 vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~v~~------~ 86 (336)
T PRK05671 16 VGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSFAEK------A 86 (336)
T ss_pred HHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHHHHH------H
Confidence 68888999988777432 33 2222221 111111 22221 2233 47899999999964 44444431 2
Q ss_pred CCCCCEEEEcCCCC
Q psy764 75 AKPGVIVIDSSTVD 88 (286)
Q Consensus 75 l~~g~ivid~st~~ 88 (286)
...|..|||.|+..
T Consensus 87 ~~~G~~VIDlS~~f 100 (336)
T PRK05671 87 RAAGCSVIDLSGAL 100 (336)
T ss_pred HHCCCeEEECchhh
Confidence 34688999998753
No 454
>PRK07060 short chain dehydrogenase; Provisional
Probab=83.65 E-value=5.8 Score=32.87 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=26.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999887765543
No 455
>PRK06484 short chain dehydrogenase; Validated
Probab=83.65 E-value=2.9 Score=39.39 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|+++|++|++.+|++++.+.+.+. +. ....+-.=+.++++++.++.. +.+...+=++
T Consensus 281 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~ 346 (520)
T PRK06484 281 IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGD-----------EHLSVQADITDEAAVESAFAQ---IQARWGRLDV 346 (520)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------ceeEEEccCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998887766543 11 111233335566667776653 3333333357
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 347 li~nAg~ 353 (520)
T PRK06484 347 LVNNAGI 353 (520)
T ss_pred EEECCCC
Confidence 7776544
No 456
>PLN02686 cinnamoyl-CoA reductase
Probab=83.61 E-value=1.8 Score=38.91 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=24.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||+.+++.|+++||+|.+..|+.++.+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999888877655444
No 457
>KOG4230|consensus
Probab=83.42 E-value=2.5 Score=39.86 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.+++|.+.++|+||.++.-|+-++. +.++||.++||+...
T Consensus 197 ~~lae~v~~ADIvIvAiG~PefVKg---------dWiKpGavVIDvGIN 236 (935)
T KOG4230|consen 197 RNLAEKVSRADIVIVAIGQPEFVKG---------DWIKPGAVVIDVGIN 236 (935)
T ss_pred ccHHHHhccCCEEEEEcCCcceeec---------ccccCCcEEEEcccc
Confidence 4678889999999999998765443 346789999999754
No 458
>PRK05855 short chain dehydrogenase; Validated
Probab=83.40 E-value=2.5 Score=40.13 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+.- .+.-.+..++-+=+.++++++.++.. +.+...+=+++
T Consensus 327 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~id~l 396 (582)
T PRK05855 327 IGRETALAFAREGAEVVASDIDEAAAERTAELI-------RAAGAVAHAYRVDVSDADAMEAFAEW---VRAEHGVPDIV 396 (582)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHhcCCCcEE
Confidence 799999999999999999999987766554320 00001122333345666777777653 33333333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 397 v~~Ag~ 402 (582)
T PRK05855 397 VNNAGI 402 (582)
T ss_pred EECCcc
Confidence 777654
No 459
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.40 E-value=4.6 Score=34.09 Aligned_cols=25 Identities=20% Similarity=0.004 Sum_probs=22.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||.++|+.|++.|++|.+.+|+.+.
T Consensus 24 IG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 24 IAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChhh
Confidence 7899999999999999998888543
No 460
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=83.36 E-value=3 Score=36.59 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|+.++.+.+.+. +.. . -....++.+=+.+..+++.++.. +.....+=+++
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~-l~~-~-----~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~~~iD~l 87 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQE-LGI-P-----PDSYTIIHIDLGDLDSVRRFVDD---FRALGKPLDAL 87 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hhc-c-----CCceEEEEecCCCHHHHHHHHHH---HHHhCCCccEE
Confidence 79999999999999999999998877665432 110 0 01223444455666667766653 22222222566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 88 i~nAg 92 (322)
T PRK07453 88 VCNAA 92 (322)
T ss_pred EECCc
Confidence 66543
No 461
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=83.21 E-value=1.2 Score=35.83 Aligned_cols=44 Identities=14% Similarity=0.385 Sum_probs=30.3
Q ss_pred CcEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEecCCh
Q psy764 15 HDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
-+|..+|+++++.+.... .| +..+.|.+++++++|+||.++--.
T Consensus 29 ~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 29 SEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 379999999998653322 23 455789999999999999998643
No 462
>PRK08339 short chain dehydrogenase; Provisional
Probab=83.20 E-value=1.5 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++|+.|++.|++|.+.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766554
No 463
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=83.20 E-value=2.6 Score=36.83 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH---HHH-cC-----------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT---LAK-EG-----------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~---l~~-~g-----------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|++.||+|.+..|+.++.+. +.. .+ +.-..+..++++++|+||-+-.
T Consensus 17 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 17 IASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 7999999999999999988777654332 221 11 1112345667778898887663
No 464
>PRK05086 malate dehydrogenase; Provisional
Probab=83.18 E-value=3.7 Score=36.12 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred ccHHHHHHHHh---CCCcEEEEcCCchHH---HHHHHcC--Ccc----cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQF---QGHDVIVYDKNTDAS---QTLAKEG--ANM----ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~---~G~~V~~~dr~~~~~---~~l~~~g--~~~----~~s~~e~~~~adivi~~v~~ 57 (286)
||++++..|.. .++++.++||++... -.+...+ ..+ .+++.+.++++|+||+|...
T Consensus 12 VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 12 IGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred HHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68888887744 346899999985431 1232212 111 34667788899999999875
No 465
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=83.15 E-value=4.7 Score=33.38 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|+.|.+.+|++++.+.+...- . ....++-.-+.+..+++.++.. +.+...+=+.+
T Consensus 18 iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 84 (245)
T PRK12936 18 IGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----G------ERVKIFPANLSDRDEVKALGQK---AEADLEGVDIL 84 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----C------CceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999998899888776554320 0 1223333345566666666553 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 i~~ag~ 90 (245)
T PRK12936 85 VNNAGI 90 (245)
T ss_pred EECCCC
Confidence 777654
No 466
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.92 E-value=2.4 Score=38.92 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHH
Q psy764 4 TLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLD 63 (286)
Q Consensus 4 ~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~ 63 (286)
..+++.|.++| .+|.+||..-........ +.....++.++++++|+|+++..++ +.++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~ad~vvi~t~~~-~~~~ 401 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLD-GLVTLVSLDEALATADVLVMLVDHS-QFKA 401 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhcc-CceeeCCHHHHHhCCCEEEECCCCH-Hhcc
Confidence 46788999996 999999976433221111 1223478889999999999999985 4444
No 467
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=82.86 E-value=4.8 Score=35.83 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc----------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE----------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~ 68 (286)
+|+.+|.+|++.|. ++.++|.+.-....+... |..-+....+.++ +.++-+......-..+.+
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~---- 110 (339)
T PRK07688 35 LGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL---- 110 (339)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----
Confidence 68999999999998 899999875433333221 1011111112222 344444444321111111
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
.+.+..-++|||++. .+.+...+.+.+.+.++.++.+-+.+
T Consensus 111 ---~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 111 ---EELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ---HHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeeee
Confidence 111334579999855 45555667777778888888765444
No 468
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.82 E-value=4 Score=33.81 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|++.|++|.+.+|++++.+.+
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999998766554
No 469
>PLN02427 UDP-apiose/xylose synthase
Probab=82.82 E-value=1.8 Score=39.14 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=38.0
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcC-------Ccc-------cCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEG-------ANM-------ALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~-------~~s~~e~~~~adivi~~v 55 (286)
||+.+++.|+++ |++|.+.+|+.++...+...+ ++. ..++.++++++|+||=+.
T Consensus 26 IGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 26 IGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 799999999998 599999999877765553321 111 123456677899888765
No 470
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.76 E-value=2.9 Score=36.36 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=25.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|++.|++|++.+|+.++.+..
T Consensus 28 IG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 28 LGYETAAALAAKGAHVVLAVRNLDKGKAA 56 (306)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999999998775543
No 471
>PRK06841 short chain dehydrogenase; Provisional
Probab=82.76 E-value=4.4 Score=33.88 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+++..+...+.. . .....+..-+.++.+++.++.. +.+...+=+.+
T Consensus 27 IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~----~------~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 93 (255)
T PRK06841 27 IGHAIAELFAAKGARVALLDRSEDVAEVAAQLL----G------GNAKGLVCDVSDSQSVEAAVAA---VISAFGRIDIL 93 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh----C------CceEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 789999999999999999999876433222110 0 1112333445556666666543 33323334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 94 i~~ag~ 99 (255)
T PRK06841 94 VNSAGV 99 (255)
T ss_pred EECCCC
Confidence 777654
No 472
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.71 E-value=4.8 Score=33.97 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=42.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc--hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT--DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|++.|++|++.+|+. +..+.+.+.- . ..+..+-+=+.++.+++.++.. +.+...+=+
T Consensus 21 IG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~------~~~~~~~~Dv~~~~~i~~~~~~---~~~~~g~iD 87 (256)
T PRK07889 21 IAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----P------EPAPVLELDVTNEEHLASLADR---VREHVDGLD 87 (256)
T ss_pred HHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----C------CCCcEEeCCCCCHHHHHHHHHH---HHHHcCCCc
Confidence 78999999999999999998764 3344443210 0 0223333345566667776653 332222234
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 88 ~li~nAG~ 95 (256)
T PRK07889 88 GVVHSIGF 95 (256)
T ss_pred EEEEcccc
Confidence 66665544
No 473
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.65 E-value=4.1 Score=34.28 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+ ++.+.+.+.- .+.-....++-.=+.+..+++.++.. +.+...+=+.+
T Consensus 27 IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~g~id~l 95 (258)
T PRK06935 27 LGQGYAVALAKAGADIIITTHG-TNWDETRRLI-------EKEGRKVTFVQVDLTKPESAEKVVKE---ALEEFGKIDIL 95 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH-------HhcCCceEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 7999999999999999999988 4433332210 00001122333345555666666553 33322233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 96 i~~ag 100 (258)
T PRK06935 96 VNNAG 100 (258)
T ss_pred EECCC
Confidence 76654
No 474
>PRK06703 flavodoxin; Provisional
Probab=82.61 E-value=12 Score=28.79 Aligned_cols=88 Identities=13% Similarity=-0.000 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh------hHHHHHhcCCccccccCCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS------QDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~------~~~~~v~~~~~~l~~~l~~ 77 (286)
..++..|...|++|.+.+.+.. +. +.+.+.|.|+++.|+. ..+...+.. +.....+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~--------------~~-~~l~~~d~viigspt~~~g~~p~~~~~f~~~---l~~~~l~ 81 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGM--------------DA-EELLAYDGIILGSYTWGDGDLPYEAEDFHED---LENIDLS 81 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhC--------------CH-HHHhcCCcEEEEECCCCCCcCcHHHHHHHHH---HhcCCCC
Confidence 3455555566666666654321 11 1256788888888753 235555542 2221224
Q ss_pred CCEEEEcCCCC------chHHHHHHHHHHhcCCceEec
Q psy764 78 GVIVIDSSTVD------PQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 78 g~ivid~st~~------p~~~~~~~~~~~~~g~~~~~~ 109 (286)
++.+.-.++.. ....+.+.+.+.+.|..++..
T Consensus 82 ~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 82 GKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred CCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 55444444432 134455778888888877653
No 475
>PRK08017 oxidoreductase; Provisional
Probab=82.58 E-value=1.6 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 14 IGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 7999999999999999999999887765543
No 476
>PRK06756 flavodoxin; Provisional
Probab=82.57 E-value=20 Score=27.45 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=49.1
Q ss_pred HhhcCcEEEEecCChh------HHHHHhcCCccccccCCCCCEEEEcCCCC------chHHHHHHHHHHhcCCceEeccC
Q psy764 44 LASGAEFIISMLPASQ------DVLDAYDGSDGILKHAKPGVIVIDSSTVD------PQVPQTLSNLAREKQITFLDAPV 111 (286)
Q Consensus 44 ~~~~adivi~~v~~~~------~~~~v~~~~~~l~~~l~~g~ivid~st~~------p~~~~~~~~~~~~~g~~~~~~pv 111 (286)
.+.++|.|+++.|+.. .+...+.. +...-.+|+.+.-.+|.. ....+.+.+.+.+.|+.++..|+
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~---l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~ 122 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDA---MDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGL 122 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHH---HhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCe
Confidence 3568899999988632 34555442 222122455555444422 25566788888888988775432
Q ss_pred CCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 112 SGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 112 ~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
. +-..-+++.++.++.+-+.+.
T Consensus 123 ~------------~~~~p~~~d~~~~~~~~~~~~ 144 (148)
T PRK06756 123 K------------VELTPEDEDVEKCLQFGAEFV 144 (148)
T ss_pred E------------EecCCCHHHHHHHHHHHHHHH
Confidence 1 111224556666666655543
No 477
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=82.54 E-value=8.3 Score=32.18 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA 35 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~ 35 (286)
+|..++..+...|.+|++.++++++.+.+.+.|.
T Consensus 146 ~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 179 (271)
T cd05188 146 VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA 179 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 4667777777788999999999888777766553
No 478
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.51 E-value=5.5 Score=31.73 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=52.3
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|+.++.+|++.|. +++++|.+.-....+.+. |-.-+....+.++ +.++=+.+.+..-.-+. +
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~-------~ 82 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDENN-------L 82 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhh-------H
Confidence 68999999999998 599999886222222211 1111111111111 23333333332111011 1
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhc-CCceEecc
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREK-QITFLDAP 110 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~-g~~~~~~p 110 (286)
.+.+..-++||++ +-.+.....+.+.+.++ ++.++.+-
T Consensus 83 ~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 83 EGLFGDCDIVVEA-FDNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 1123345789988 55566556566666665 88777653
No 479
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.48 E-value=3.9 Score=36.22 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch--HHHH----HHH------cCCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD--ASQT----LAK------EGANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~--~~~~----l~~------~g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.++..|...+ .+|.++|+++. +.+. +.. ..+....++.+.+++||+||++-..
T Consensus 14 VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~ 88 (325)
T cd01336 14 IAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAM 88 (325)
T ss_pred HHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEEEeCCc
Confidence 6889999998754 48999999653 2221 111 0122345667888999999988653
No 480
>PRK09072 short chain dehydrogenase; Provisional
Probab=82.41 E-value=4.9 Score=33.90 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+...- .. . .+..++-.-+.++.+++.+... +.. ..+=+.+
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~-~------~~~~~~~~D~~d~~~~~~~~~~---~~~-~~~id~l 84 (263)
T PRK09072 17 IGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY-P------GRHRWVVADLTSEAGREAVLAR---ARE-MGGINVL 84 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc-C------CceEEEEccCCCHHHHHHHHHH---HHh-cCCCCEE
Confidence 789999999999999999999988766554321 00 0 1222333345566666666543 222 2233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 v~~ag~ 90 (263)
T PRK09072 85 INNAGV 90 (263)
T ss_pred EECCCC
Confidence 665443
No 481
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.24 E-value=6.1 Score=33.11 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|.+..++ ++..+.+... +...+-.=+.++.+++.++.. +.+...+=++
T Consensus 19 IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-------------~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~ 82 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLYNSAENEAKELREK-------------GVFTIKCDVGNRDQVKKSKEV---VEKEFGRVDV 82 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-------------CCeEEEecCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999887554 3333433321 123344445666677776653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 83 li~~ag~ 89 (255)
T PRK06463 83 LVNNAGI 89 (255)
T ss_pred EEECCCc
Confidence 7776544
No 482
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=82.19 E-value=2.4 Score=35.78 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+.+.|.+.||+|.+..|++++...+. .++ .-..++..++++.|.++++.+
T Consensus 12 ~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 12 VGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred hHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 799999999999999999999999988877 443 333456677788998888887
No 483
>PRK10537 voltage-gated potassium channel; Provisional
Probab=82.17 E-value=7.5 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=54.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-cC--CHHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-AL--SLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~--s~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++.+.+.++ .+.....|... .. +-.+. +++|+.|+++.+++..-..+.. ...
T Consensus 251 lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL----~ar 324 (393)
T PRK10537 251 LAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVL----AAK 324 (393)
T ss_pred HHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHH----HHH
Confidence 57889999999999999988663 23333333211 11 11222 4588999998887654333332 122
Q ss_pred cCCC-CCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 74 HAKP-GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 74 ~l~~-g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
.+.| .++++-+.+ ++ -.+.+.+.|+..+=.|
T Consensus 325 ~l~p~~kIIa~v~~--~~----~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 325 EMSSDVKTVAAVND--SK----NLEKIKRVHPDMIFSP 356 (393)
T ss_pred HhCCCCcEEEEECC--HH----HHHHHHhcCCCEEECH
Confidence 3444 456664443 22 2344566787766444
No 484
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.13 E-value=5.5 Score=34.14 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch---HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD---ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~---~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|++.|++|.+.+|+.+ +.+++.+.. .....+-+=+.++.+++.++.. +.+...+=
T Consensus 19 IG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~---i~~~~g~i 84 (274)
T PRK08415 19 IAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL-----------GSDYVYELDVSKPEHFKSLAES---LKKDLGKI 84 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc-----------CCceEEEecCCCHHHHHHHHHH---HHHHcCCC
Confidence 799999999999999999998853 333332210 0011233335666667666653 33322233
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|+....
T Consensus 85 DilVnnAG~ 93 (274)
T PRK08415 85 DFIVHSVAF 93 (274)
T ss_pred CEEEECCcc
Confidence 566766544
No 485
>PRK12743 oxidoreductase; Provisional
Probab=82.10 E-value=4.6 Score=33.92 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEc-CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|.+.. ++.+..+.+.+. +...-.+.+++-.-+.++.+++.++.. +.....+=+.
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~ 83 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEEGAKETAEE-------VRSHGVRAEIRQLDLSDLPEGAQALDK---LIQRLGRIDV 83 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999998764 555554444321 000001233444556777777776653 3333333356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|.+...
T Consensus 84 li~~ag~ 90 (256)
T PRK12743 84 LVNNAGA 90 (256)
T ss_pred EEECCCC
Confidence 6666543
No 486
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.96 E-value=4.6 Score=33.98 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 13 iG~~la~~l~~~g~~Vi~~~r~~~~~~~~ 41 (263)
T PRK06181 13 IGRALAVRLARAGAQLVLAARNETRLASL 41 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999998766554
No 487
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=81.95 E-value=4 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=24.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|+++|++|++.+|++++...+
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 78999999999999999999997665443
No 488
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=81.81 E-value=5.8 Score=36.45 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=60.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HH----HHH-HcCCcccC-CHHHHhhcCcEEEEecCCh---hHHHHHhcC----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQ----TLA-KEGANMAL-SLSTLASGAEFIISMLPAS---QDVLDAYDG---- 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~----~l~-~~g~~~~~-s~~e~~~~adivi~~v~~~---~~~~~v~~~---- 67 (286)
.|.++|+.|.+.|++|+++|.++.. .. .+. ..|+.+.. ...+.+.++|+||.+-.-+ ..+......
T Consensus 10 ~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~~a~~~~i~i 89 (433)
T TIGR01087 10 TGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQAAAKRGIPV 89 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 4778999999999999999976432 21 122 24765532 1245567899888765322 222221111
Q ss_pred --CccccccCCCCCEEEEcCCCC-chHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 68 --SDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 68 --~~~l~~~l~~g~ivid~st~~-p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
.-.++..+.+.++|--+.|-. ..++.-+...+...|..+.-+...|.|
T Consensus 90 ~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 90 VGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred EEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 001111122344555454443 444444566676666555443334443
No 489
>PRK06114 short chain dehydrogenase; Provisional
Probab=81.66 E-value=5.2 Score=33.59 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|++.|++|.+.+|+.++ .+.+.+. +...-.+...+-.-+.++.+++.++.. +.+...+=++
T Consensus 20 IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~g~id~ 89 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALFDLRTDDGLAETAEH-------IEAAGRRAIQIAADVTSKADLRAAVAR---TEAELGALTL 89 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHH-------HHhcCCceEEEEcCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999999987542 3333211 000001223333445666667766653 3333333356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 90 li~~ag~ 96 (254)
T PRK06114 90 AVNAAGI 96 (254)
T ss_pred EEECCCC
Confidence 7776543
No 490
>PRK05650 short chain dehydrogenase; Provisional
Probab=81.56 E-value=5.2 Score=33.91 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|+.++.+.+.
T Consensus 12 IG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 12 LGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999987766543
No 491
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=81.53 E-value=4.2 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=20.0
Q ss_pred HHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 6 KLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
++..|++.|++|+++|.+++.++.+
T Consensus 44 ~a~~la~~g~~V~~iD~s~~~l~~a 68 (195)
T TIGR00477 44 NSLYLSLAGYDVRAWDHNPASIASV 68 (195)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHH
Confidence 4566778899999999998876654
No 492
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.47 E-value=7.5 Score=33.14 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=86.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
|..++..|.+.||+|+++-++....+.+.+.| ..-++.-..+...+.+.+.+ ..-++||
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-------------~~~v~~g~l~~~~l~~~l~~--------~~i~~VI 70 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-------------ALTVHTGALDPQELREFLKR--------HSIDILV 70 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccC-------------CceEEECCCCHHHHHHHHHh--------cCCCEEE
Confidence 66788888899999999988876544333221 22344455555566665542 1236999
Q ss_pred EcCCCCchHH-HHHHHHHHhcCCceEec--cCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHH---hcCCeEec-CCcc
Q psy764 83 DSSTVDPQVP-QTLSNLAREKQITFLDA--PVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKC---MGRNIVHC-GDSG 155 (286)
Q Consensus 83 d~st~~p~~~-~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~---~g~~v~~~-g~~g 155 (286)
|.+....... +...+.+.+.|+.|+.- |.. ..+....++..- +.+..++.. .+.+++.. |.-.
T Consensus 71 DAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~------~~~~~~~~v~~~----~ea~~~~~~~~~~~~~i~lttG~k~ 140 (256)
T TIGR00715 71 DATHPFAAQITTNATAVCKELGIPYVRFERPPL------ALGKNIIEVPDI----EEATRVAYQPYLRGKRVFLTAGASW 140 (256)
T ss_pred EcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCC------CCCCCeEEeCCH----HHHHHHhhhccccCCcEEEecCcch
Confidence 9987665433 44555667778888853 321 122224444432 333345555 55566654 3222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~ 192 (286)
-....+......++.-+.-..|.+..|.++|++++.+
T Consensus 141 l~~f~~~~~~~~~~~RvLP~~~~l~~~~~~G~~~~~i 177 (256)
T TIGR00715 141 LSHFSLSQDEAVVFVRVLPYPQALAQALKLGFPSDRI 177 (256)
T ss_pred HHHHhhccCCceEEEEECCCchhhHHHHHcCCChhcE
Confidence 2222221111111111223346777888999987765
No 493
>PRK07831 short chain dehydrogenase; Provisional
Probab=81.30 E-value=4 Score=34.41 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|+++|++|++.+|++++.+..
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGET 58 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 78999999999999999999998766544
No 494
>PRK06483 dihydromonapterin reductase; Provisional
Probab=81.29 E-value=5.8 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||..+++.|+++|++|.+.+|+++.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~ 38 (236)
T PRK06483 14 IGLALAWHLLAQGQPVIVSYRTHYP 38 (236)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCchh
Confidence 7999999999999999999998754
No 495
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.23 E-value=2.1 Score=37.84 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCC-------cEEEEcCCc--hHHHHHH----Hc------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH-------DVIVYDKNT--DASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-------~V~~~dr~~--~~~~~l~----~~------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.++..|+..|. ++.++|+++ ++.+-.+ .. +..+..+..+.+++||+||++-..
T Consensus 12 VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~ 86 (323)
T cd00704 12 IGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAF 86 (323)
T ss_pred HHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCC
Confidence 78999999987663 499999987 5432111 11 123335677888999999988654
No 496
>PRK09291 short chain dehydrogenase; Provisional
Probab=81.21 E-value=2.8 Score=35.09 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 14 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 14 FGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999987665554
No 497
>PLN02214 cinnamoyl-CoA reductase
Probab=81.07 E-value=2.2 Score=37.90 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-----HHHHc--CC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-----TLAKE--GA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-----~l~~~--g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|+++||+|.+..|+.++.. .+... .+ .-..+..++++++|+||-+-.
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 22 IASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 799999999999999999998866421 11110 11 111234566778898887764
No 498
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=81.03 E-value=0.89 Score=33.15 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHH
Q psy764 165 NMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAED 243 (286)
Q Consensus 165 n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~ 243 (286)
+.+++.++.++.++ +.+.|++++...+++..+. |..........-|. .+.+..-+|+.+... .++
T Consensus 17 pA~~~~~~eal~~a---~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~----~l~~~v~tPgG~T~~-------gl~ 82 (107)
T PF14748_consen 17 PAYFFLFIEALADA---AVAQGLPREEARKLVAQTFIGAAKLLEESGRSPA----ELRDEVTTPGGTTIA-------GLE 82 (107)
T ss_dssp HHHHHHHHHHHHHH---HHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HH----HHHHHHS-TTSHHHH-------HHH
T ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHH----HHhhhccCCCCcHHH-------HHH
Confidence 33466777777777 8899999999999988753 21111111000000 111222346655555 556
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHH
Q psy764 244 LANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 244 ~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
..++.|+.-.+.+++...++++.+
T Consensus 83 ~L~~~~~~~~~~~a~~aa~~R~~e 106 (107)
T PF14748_consen 83 VLEKGGLRAAIMEALEAAVERAKE 106 (107)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHc
Confidence 667777777777777777776654
No 499
>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1.1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....
Probab=81.03 E-value=6 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHH
Q psy764 168 LGVTMMGVAEAMNLGVKLGM--NAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a 245 (286)
.......+.|+..++++.|+ +++.+.+.+........ + ..+.+..+. ..+. .+ +.--=...+.+.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~--~---~~~SM~~D~-~~gr-----~t-Eid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP--D---NRSSMLQDI-EAGR-----PT-EIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT--T---T--HHHHHH-HTTB--------SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC--C---ccccHHHHH-HHcc-----cc-cHHHHHHHHHHHH
Confidence 44556788999999999995 44444444432110000 0 001111100 0111 01 1111245689999
Q ss_pred hhcCCCchHHHHHHHHHHH
Q psy764 246 NRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 246 ~~~g~~~p~~~~~~~~~~~ 264 (286)
+++|+++|..+.++++.+.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
No 500
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.88 E-value=10 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCC-HHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALS-LSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s-~~e~~~~adivi~~v~ 56 (286)
+|..+|..|.+.|++|+++|+++. ..+.+.+.|+.+... ..+....+|+||++..
T Consensus 27 ~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G 87 (480)
T PRK01438 27 SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG 87 (480)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence 577889999999999999996542 234455667765421 1123456899998863
Done!