RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy764
(286 letters)
>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase.
3-hydroxyisobutyrate dehydrogenase is an enzyme that
catalyzes the NAD+-dependent oxidation of
3-hydroxyisobutyrate to methylmalonate semialdehyde of
the valine catabolism pathway. In Pseudomonas
aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is
co-induced with methylmalonate-semialdehyde
dehydrogenase (mmsA) when grown on medium containing
valine as the sole carbon source. The positive
transcriptional regulator of this operon (mmsR) is
located upstream of these genes and has been identified
as a member of the XylS/AraC family of transcriptional
regulators. 3-hydroxyisobutyrate dehydrogenase shares
high sequence homology to the characterized
3-hydroxyisobutyrate dehydrogenase from rat liver with
conservation of proposed NAD+ binding residues at the
N-terminus (G-8,10,13,24 and D-31). This enzyme belongs
to the 3-hydroxyacid dehydrogenase family, sharing a
common evolutionary origin and enzymatic mechanism with
6-phosphogluconate. HIBADH exhibits sequence similarity
to the NAD binding domain of 6-phosphogluconate
dehydrogenase above trusted (pfam03446) [Energy
metabolism, Amino acids and amines].
Length = 288
Score = 316 bits (811), Expect = e-108
Identities = 137/270 (50%), Positives = 173/270 (64%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH V V+D DA + GA A S + A GA+ +I+MLPA Q V+ Y G +GIL
Sbjct: 19 GHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILP 78
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ++ID ST+DP + L+ LA F+DAPVSGG A+ TLTFMVGG
Sbjct: 79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEE 138
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+P+L MGRNIVHCGD G GQ AK+CNNMLLG++M+G AEAM LG KLG++ K+L
Sbjct: 139 FAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLF 198
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++ NTSSGRCWSS+ YNPVPGV+ PASN Y GGF +L+ KD+ LA+D A A T
Sbjct: 199 EIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTP 258
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L LA +Y DKG KDFS + + L+
Sbjct: 259 LGALARQLYSLFDDKGHGGKDFSSVIQLLR 288
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 270 bits (693), Expect = 8e-91
Identities = 104/272 (38%), Positives = 155/272 (56%), Gaps = 8/272 (2%)
Query: 13 QGHDVIVYDKNTDAS-QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71
GH+V VY++ + + + LA GA +A S + A+ A+ +I+MLP V G +G+
Sbjct: 22 AGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGL 81
Query: 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDK 131
L+ KPG IVID ST+ P+ + L+ K + FLDAPVSGG A TLT MVGGD
Sbjct: 82 LEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDA 141
Query: 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
+ E+AKP+L+ MG+NIVH G G GQ AKL NN+LL + +AEA+ L K G++ +
Sbjct: 142 EAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDV 201
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251
+ +VI+ + W E Y P + +++ GF + L+ KD+ LA D A A
Sbjct: 202 VLEVISGGAAGSWILENYGPR------MLEG-DFSPGFAVDLMLKDLGLALDAAKELGAP 254
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L+ LA +Y + G ++DFS + + L+
Sbjct: 255 LPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional.
Length = 296
Score = 176 bits (448), Expect = 8e-54
Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 7/268 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ ++VYD+N +A + GA A + +A + II+MLP S V + G +GI++
Sbjct: 25 GYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIE 84
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG +VID S++ P + ++ + K I LDAPVSGG A + TL+ MVGGDK+
Sbjct: 85 GAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAI 144
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+K ++K M ++VH GD G G V KL N +++ + + ++EA+ L K G+N L+
Sbjct: 145 FDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVY 204
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
I G S+ + P V+ N+ GF+I L KD+ A D ++ A
Sbjct: 205 QAIR--GGLAGSTVLDAKAPMVM-----DRNFKPGFRIDLHIKDLANALDTSHGVGAPLP 257
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEF 281
L+ + + L G D S + +
Sbjct: 258 LTAAVMEMMQALKADGLGTADHSALACY 285
>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate
dehydrogenase. The NAD binding domain of
6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Length = 163
Score = 169 bits (431), Expect = 6e-53
Identities = 58/138 (42%), Positives = 81/138 (58%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ V VY++ + + L EGA A S + + A+ +I+M+PA V G DG+L
Sbjct: 23 GYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAVDAVILGEDGLLP 82
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
KPG I+ID ST DP + + EK I FLDAPVSGG + A+ TL+ MVGGD+ +
Sbjct: 83 GLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEA 142
Query: 134 LEKAKPILKCMGRNIVHC 151
E+ KPIL+ MG + H
Sbjct: 143 FERVKPILEAMGACVTHY 160
>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase.
This model represents 2-hydroxy-3-oxopropionate
reductase (EC 1.1.1.60), also called tartronate
semialdehyde reductase. It follows glyoxylate
carboligase and precedes glycerate kinase in D-glycerate
pathway of glyoxylate degradation. The eventual product,
3-phosphoglycerate, is an intermediate of glycolysis and
is readily metabolized. Tartronic semialdehyde, the
substrate of this enzyme, may also come from other
pathways, such as D-glucarate catabolism.
Length = 291
Score = 159 bits (403), Expect = 3e-47
Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 7/263 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ + V + + L GA A + + A+ I +M+P S V + G +GI++
Sbjct: 22 GYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIE 81
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG ++D S++ P + + +EK I +LDAPVSGG A E TL+ MVGGD++
Sbjct: 82 GAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAV 141
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++ KP+ + +G+NIV G +G+GQ K+ N +++ + + V+EA+ K G++ +
Sbjct: 142 FDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVR 201
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ G S V V + GF+I L KD+ LA D A A
Sbjct: 202 QALR---GGLAGSTVLE----VKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLP 254
Query: 254 LSKLATSIYKRLMDKGCQDKDFS 276
+ ++ L G D S
Sbjct: 255 NTATVQELFNTLRANGGGQLDHS 277
>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate
dehydrogenase; Provisional.
Length = 296
Score = 134 bits (339), Expect = 1e-37
Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 20/279 (7%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
QGH + V+D N A L +GA A S + A+GAEF+I+MLP V G +G+
Sbjct: 23 QGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ +VID ST+ P L + K + +D PV + A TL + GG
Sbjct: 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAE 142
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGV-AEAMNLGVKLGMNAKL 191
+E+A PIL MG +++ G G G KL NN + + + + AEA L LG++ +
Sbjct: 143 QVERATPILMAMGNELINAGGPGMGIRVKLINN-YMSIALNALSAEAAVLCEALGLSFDV 201
Query: 192 LSDVIN-TSSGR-----CWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245
V++ T++G+ W ++V + G LS F I L KD+ +A D+A
Sbjct: 202 ALKVMSGTAAGKGHFTTTWPNKV---LKGDLS---------PAFMIDLAHKDLGIALDVA 249
Query: 246 NRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
N+ L + +Y + G +D+S I E ++
Sbjct: 250 NQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288
>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional.
Length = 292
Score = 102 bits (255), Expect = 1e-25
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 7/212 (3%)
Query: 30 LAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 89
L GA + + ++ I M+P + V + G +G K + G ++D S++ P
Sbjct: 38 LLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP 97
Query: 90 QVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV 149
+ + E +LDAPVSGG A+E TL+ MVGGD++ E+ KP+ + +G+NI
Sbjct: 98 IETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157
Query: 150 HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVY 209
G +G+GQ K+ N +++ + + V+EA+ K G + + + G SS +
Sbjct: 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL---MGGFASSRIL 214
Query: 210 NPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241
V +N GFKI+L KD+ LA
Sbjct: 215 E----VHGERMIKRTFNPGFKIALHQKDLNLA 242
>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase.
Length = 1378
Score = 101 bits (253), Expect = 4e-24
Identities = 65/208 (31%), Positives = 92/208 (44%), Gaps = 5/208 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
V YD G S + +A + ++ M+ + G G +
Sbjct: 347 NFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVS 406
Query: 74 HAKPGVIVIDSSTVDPQ-VPQTLSNLARE-KQITFLDAPVSGGTKAAQEATLTFMVGGDK 131
G ++ SSTV P V Q L E + I +DAPVSGG K A TLT M G
Sbjct: 407 ALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTD 466
Query: 132 SSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190
+L+ A +L + + V G G G K+ N +L GV + AEAM G +LG+N +
Sbjct: 467 EALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTR 526
Query: 191 LLSDVINTSSGRCWSSEVYNPVPGVLSN 218
L D+I+ + G W E N VP +L N
Sbjct: 527 KLFDIISNAGGTSWMFE--NRVPHMLDN 552
Score = 91.1 bits (226), Expect = 2e-20
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 12/236 (5%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V ++ +T + + G + S + A A ++ +L V D + G +G K
Sbjct: 27 GFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAK 86
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSN-LAREKQITFL-DAPVSGGTKAAQEATLTFMVGGDK 131
+ G +++ ST+ P Q L L K+ FL DA VS G L + G
Sbjct: 87 GLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRS 146
Query: 132 SSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190
++ +A+P L M + + G+ G G K+ N +L G+ ++ AEAM LGV+ G++
Sbjct: 147 DAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPW 206
Query: 191 LLSDVINTSSGRCWSSEVY-NPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245
++ D+I+ ++G W ++ N VP +L + + +++L +++ + D+A
Sbjct: 207 IIYDIISNAAGSSW---IFKNHVPLLLKDDYIEGRF-----LNVLVQNLGIVLDMA 254
>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 301
Score = 86.0 bits (214), Expect = 2e-19
Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFII-SMLPASQ---DVLDAYD 66
GH+V+ YD+N +A + LA+EGA A SL L + A ++ M+PA + +D
Sbjct: 22 GGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE-- 79
Query: 67 GSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 123
+ PG IVID S D + L EK I F+D SGG +
Sbjct: 80 ----LAPLLSPGDIVIDGGNSYYKDDIR---RAELLAEKGIHFVDVGTSGGVWGLERG-Y 131
Query: 124 TFMVGGDKSSLEKAKPILKCM----GRNIVHCGDSGNGQVAKLCNNMLLGVT--MM-GVA 176
M+GGDK ++E+ +PI K + +H G G G K+ +N G+ MM A
Sbjct: 132 CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHN---GIEYGMMQAYA 188
Query: 177 EAMNL 181
E L
Sbjct: 189 EGFEL 193
>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase
[Carbohydrate transport and metabolism].
Length = 300
Score = 85.5 bits (212), Expect = 2e-19
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFII-SMLPASQDVLDAYDGSD 69
GHDV+ YD N A + L EGA A SL L + A I+ M+PA D
Sbjct: 22 GGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLA 81
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+L G IVID + + + L EK I FLD SGG A+ M+GG
Sbjct: 82 PLL---SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERG-YCLMIGG 137
Query: 130 DKSSLEKAKPILK--CMGRN-IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 181
D+ ++E+ +PI K G + ++CG SG+G K+ +N + M +AE L
Sbjct: 138 DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192
>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase
(decarboxylating). This family resembles a larger
family (gnd) of bacterial and eukaryotic
6-phosphogluconate dehydrogenases but differs from it by
a deep split in a UPGMA similarity clustering tree and
the lack of a central region of about 140 residues.
Among complete genomes, it is found is found in Bacillus
subtilis and Mycobacterium tuberculosis, both of which
also contain gnd, and in Aquifex aeolicus. The protein
from Methylobacillus flagellatus KT has been
characterized as a decarboxylating 6-phosphogluconate
dehydrogenase as part of an unusual formaldehyde
oxidation cycle. In some sequenced organisms members of
this family are the sole 6-phosphogluconate
dehydrogenase present and are probably active in the
pentose phosphate cycle [Energy metabolism, Pentose
phosphate pathway].
Length = 298
Score = 76.4 bits (188), Expect = 4e-16
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSL---STLASGAEFIISMLPASQDVLDAYDGSDG 70
GHD + YD + DA + + ++ +L S S + M+P D
Sbjct: 23 GHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG--------IVDA 74
Query: 71 ILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFM 126
+L+ P G IVID + L +EK I LD SGG E FM
Sbjct: 75 VLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGR-ERGYCFM 133
Query: 127 VGGDKSSLEKAKPILKCMG---RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 181
+GGD + +A+P+ + + ++CG G+G K+ +N + M +AE +
Sbjct: 134 IGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191
>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein;
Reviewed.
Length = 299
Score = 75.2 bits (185), Expect = 1e-15
Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYD 66
L+ GH+V+ YD N +A K G SL L S I M+PA +
Sbjct: 19 LREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK 78
Query: 67 GSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 123
+L PG IV+D S D + E+ I ++D SGG +
Sbjct: 79 DLYPLL---SPGDIVVDGGNSRYKDDLRR---AEELAERGIHYVDCGTSGGVWGLRNG-Y 131
Query: 124 TFMVGGDKSSLEKAKPILKCM---GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMN 180
MVGGDK ++ +P+ K + G VH G G+G K+ +N + M AE +
Sbjct: 132 CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191
Query: 181 L 181
L
Sbjct: 192 L 192
>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional.
Length = 470
Score = 41.3 bits (97), Expect = 3e-04
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 25/217 (11%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--------MLPASQDV 61
+ +G + VY++ + ++ K+ + + E + S +L + +
Sbjct: 20 IASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79
Query: 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
+D D +L + G I+ID + EK I +L VSGG + A+
Sbjct: 80 VDET--IDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYG 137
Query: 122 TLTFMVGGDKSSLEKAKPIL-KCMGRN-----IVHCGDSGNGQVAKLCNNMLLGVTMMGV 175
+ M GG+K + + K IL KC + + + G +G K+ +N + M +
Sbjct: 138 P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLI 196
Query: 176 AEAMNLGVK--LGMNAKLLSDVINTSSGRCWSSEVYN 210
+E+ L +K LGM+ + LS+V N W+ + N
Sbjct: 197 SESYKL-MKHILGMSNEELSEVFNK-----WNEGILN 227
>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate
transport and metabolism].
Length = 473
Score = 38.8 bits (91), Expect = 0.003
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANM-----ALSLSTLASGAE---FIISMLPASQDVLDAY 65
G+ V VY++ T+ + E A A S+ + E I+ M+ A V DA
Sbjct: 26 GYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV-DAV 84
Query: 66 DGSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 122
+ +L + G I+ID S D + L+ EK I F+ VSGG + A+
Sbjct: 85 --IEQLLPLLEKGDIIIDGGNSHYKDTI--RRNKELS-EKGILFVGMGVSGGEEGARHGP 139
Query: 123 LTFMVGGDKSSLEKAKPIL 141
+ M GG K + E PIL
Sbjct: 140 -SIMPGGQKEAYELVAPIL 157
>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating).
This model does not specify whether the cofactor is
NADP only (EC 1.1.1.44), NAD only, or both. The model
does not assign an EC number for that reason [Energy
metabolism, Pentose phosphate pathway].
Length = 467
Score = 35.0 bits (81), Expect = 0.038
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 21/198 (10%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEF---------IISMLPASQDVLDA 64
G V VY++ + + E A + S EF I+ M+ A V DA
Sbjct: 22 GFTVSVYNRTPEKTDEFLAEHAK-GKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV-DA 79
Query: 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT 124
+ +L + G I+ID + + K I F+ + VSGG + A++ +
Sbjct: 80 V--INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-S 136
Query: 125 FMVGGDKSSLEKAKPIL-----KCMGRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGVAEA 178
M GG + PI K G G G G K+ +N + M + EA
Sbjct: 137 IMPGGSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEA 196
Query: 179 MNLGVK-LGMNAKLLSDV 195
++ LG++ + +++V
Sbjct: 197 YDILKDGLGLSNEEIAEV 214
>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated.
Length = 459
Score = 32.8 bits (76), Expect = 0.18
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 100 REKQITFLDAPVSGGTKAAQEATLT---FMVGGDKSSLEKAKPILK 142
EK I F+ VSGG + A L M GG K + E PIL+
Sbjct: 104 AEKGIHFIGMGVSGGEEGA----LHGPSIMPGGQKEAYELVAPILE 145
>gnl|CDD|219954 pfam08654, DASH_Dad2, DASH complex subunit Dad2. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to
mitosis. In Saccharomyces cerevisiae DASH forms both
rings and spiral structures on microtubules in vitro.
Length = 97
Score = 29.6 bits (67), Expect = 0.59
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 24 TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD-GSDGILKHAKPGVIVI 82
+ S LA + + LST+A G E + S+L +VL + S G+LK+++ V
Sbjct: 20 RELSDDLAAQLEELEEKLSTMADGTEAVASVLANWDNVLRSISLASLGLLKYSEDDYEVG 79
Query: 83 DSSTVDPQVPQTL 95
+P +P+TL
Sbjct: 80 AWDEEEP-LPETL 91
>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional.
Length = 287
Score = 30.7 bits (70), Expect = 0.88
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 7 LFFLQFQGHDVIVYDKNTDASQTLA----KEGANMALSLSTLASGA-----EFIIS 53
+L G DV D N + + L KE N+ L + S + +FI+S
Sbjct: 135 SLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILS 190
>gnl|CDD|182741 PRK10799, PRK10799, metal-binding protein; Provisional.
Length = 247
Score = 29.0 bits (65), Expect = 2.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKL 162
LE A I +GR + CGD+G V ++
Sbjct: 138 PGLELASWIEARLGRKPLWCGDTGPEVVQRV 168
>gnl|CDD|216969 pfam02310, B12-binding, B12 binding domain. This domain binds to
B12 (adenosylcobamide), it is found in several enzymes,
such as glutamate mutase, methionine synthase, and
methylmalonyl-CoA mutase. It contains a conserved
DxHxxGx(41)SxVx(26)GG motif, which is important for B12
binding.
Length = 121
Score = 27.7 bits (62), Expect = 3.0
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 19/78 (24%)
Query: 9 FLQFQGHDVIVYDKNTDASQTLA---KEGANM-ALSLSTLASGAEFIISMLPASQDVLDA 64
L+ G +VI+ + + +E ++ LS + LPA++++++
Sbjct: 23 ALRAAGFEVILLGADVPPEDIVEAIREEKPDVVGLSALMTTN--------LPAAKELIEL 74
Query: 65 YDGSDGILKHAKPGVIVI 82
LK +P V V+
Sbjct: 75 -------LKRIRPRVKVV 85
>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase. Phosphite
dehydrogenase (PTDH), a member of the D-specific
2-hydroxyacid dehydrogenase family, catalyzes the
NAD-dependent formation of phosphate from phosphite
(hydrogen phosphonate). PTDH has been suggested as a
potential enzyme for cofactor regeneration systems. The
D-specific 2-hydroxyacid dehydrogenase superfamily
include groups such as formate dehydrogenase, glycerate
dehydrogenase, L-alanine dehydrogenase, and
S-adenosylhomocysteine hydrolase. Despite often low
sequence identity, these proteins typically have a
characteristic arrangement of 2 similar subdomains of
the alpha/beta Rossmann fold NAD+ binding form. The NAD+
binding domain is inserted within the linear sequence of
the mostly N-terminal catalytic domain, which has a
similar domain structure to the internal NAD-binding
domain.
Length = 318
Score = 28.8 bits (65), Expect = 3.7
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 17 VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76
++ YD + + L L ++F++ LP + D L + L K
Sbjct: 170 LLYYDPHPLDQAEEQALNLRR-VELDELLESSDFLVLALPLTPDTLHLIN--AEALAKMK 226
Query: 77 PGVIVIDS---STVD 88
PG ++++ S VD
Sbjct: 227 PGALLVNPCRGSVVD 241
>gnl|CDD|235059 PRK02705, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 459
Score = 28.7 bits (65), Expect = 4.2
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 10 LQFQGHDVIVYDKNT-----DASQTLAKEG 34
L+ QG +V+V D+N + Q L +EG
Sbjct: 19 LKAQGWEVVVSDRNDSPELLERQQELEQEG 48
>gnl|CDD|216082 pfam00723, Glyco_hydro_15, Glycosyl hydrolases family 15. In
higher organisms this family is represented by
phosphorylase kinase subunits.
Length = 416
Score = 28.6 bits (64), Expect = 4.2
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 238 MKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYI 278
+ AE + +AQ S A I +L ++G +YI
Sbjct: 192 IDFAELFGDGGSAQL-YSSTADEILNKLQERGFWPLFNTYI 231
>gnl|CDD|233433 TIGR01482, SPP-subfamily, sucrose-phosphate phosphatase subfamily.
This model includes both the members of the SPP
equivalog model (TIGR01485), encompassing plants and
cyanobacteria, as well as those archaeal sequences which
are the closest relatives (TIGR01487). It remains to be
shown whether these archaeal sequences catalyze the same
reaction as SPP.
Length = 225
Score = 28.2 bits (63), Expect = 4.8
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 71 ILKHAKPGVI--VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG 128
LK P V +D + + L A SG G
Sbjct: 98 RLKVQYPRRASLVKMRYGIDVDTVREIIKELGLN----LVAVDSG------FDIHILPQG 147
Query: 129 GDK-SSLEKAKPILKCMGRNIVHCGDSGN 156
+K +++K K L + CGDS N
Sbjct: 148 VNKGVAVKKLKEKLGIKPGETLVCGDSEN 176
>gnl|CDD|216906 pfam02153, PDH, Prephenate dehydrogenase. Members of this family
are prephenate dehydrogenases EC:1.3.1.12 involved in
tyrosine biosynthesis.
Length = 258
Score = 28.1 bits (63), Expect = 5.6
Identities = 26/138 (18%), Positives = 53/138 (38%), Gaps = 18/138 (13%)
Query: 9 FLQFQGHDVIV--YDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQ--DVLD 63
L+ +G V + YD + +A+ + G + A + A+ ++ +P +VL
Sbjct: 4 ALRRKGFKVTIIGYDIDPEAAVAAVELGLIDEATDSISAVQEADIVVLAVPIEVTLEVLK 63
Query: 64 AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 123
+ H K G ++ D +V ++ + L + P++G K+ +A
Sbjct: 64 E------LAPHLKEGALITDVGSVKVKIVEDAEQLLCDGVGFIGGHPMAGTEKSGPDA-- 115
Query: 124 TFMVGGDKSSLEKAKPIL 141
+ E A IL
Sbjct: 116 -----ARANLFEGAPVIL 128
>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed.
Length = 265
Score = 28.0 bits (63), Expect = 5.7
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 19 VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77
YD+N + ++ LA + GA LS+ L + ++ AS + + + L++ K
Sbjct: 32 FYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVEC--ASVNAV--EEVVPKSLENGKD 87
Query: 78 GVIVIDSSTVDPQVPQTLSNLAREK 102
+I+ + D ++ L LA+E
Sbjct: 88 VIIMSVGALADKELFLKLYKLAKEN 112
>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase. Enzymes
in this family catalyze the NAD-dependent
alcohol-to-acid oxidation of nucleotide-linked sugars.
Examples include UDP-glucose 6-dehydrogenase (1.1.1.22)
, GDP-mannose 6-dehydrogenase (1.1.1.132) ,
UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136),
UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase.
These enzymes are most often involved in the
biosynthesis of polysaccharides and are often found in
operons devoted to that purpose. All of these enzymes
contain three Pfam domains, pfam03721, pfam00984, and
pfam03720 for the N-terminal, central, and C-terminal
regions respectively.
Length = 409
Score = 28.0 bits (63), Expect = 6.7
Identities = 24/103 (23%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 13 QGHDVIVYDKNTD----------------ASQTLAKEGANMALSLST----LASGAEFII 52
GHDV D + + + LAK L +T A+ II
Sbjct: 22 LGHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALKAGRLRATTDYEEAIRDADVII 81
Query: 53 SMLPASQDV-----LDA-YDGSDGILKHAKPGVIVIDSSTVDP 89
+P L ++ I KH + G V+ STV P
Sbjct: 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPP 124
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 27.3 bits (61), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 10 LQFQGHDVIVYDKNTDASQ 28
LQ QGH+V V++KN +
Sbjct: 19 LQEQGHEVKVFEKNESVKE 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,753,936
Number of extensions: 1262394
Number of successful extensions: 1329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 39
Length of query: 286
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 190
Effective length of database: 6,679,618
Effective search space: 1269127420
Effective search space used: 1269127420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.3 bits)