RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy764
(286 letters)
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics,
structural genomics consortium, SGC, oxidoreductase;
2.38A {Homo sapiens} PDB: 2i9p_A*
Length = 296
Score = 380 bits (977), Expect = e-134
Identities = 130/272 (47%), Positives = 184/272 (67%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++GILK
Sbjct: 23 GYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK 82
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG +
Sbjct: 83 KVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDE 142
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++ KLL+
Sbjct: 143 FAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLA 202
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A +
Sbjct: 203 KILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPIL 262
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ + KG KDFS +++FL+ +
Sbjct: 263 LGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 373 bits (959), Expect = e-131
Identities = 127/273 (46%), Positives = 172/273 (63%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ + V+D A L GA+ A S GA+ +ISMLPASQ V Y DG+L
Sbjct: 26 GYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLA 85
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A TLTFMVGGD +
Sbjct: 86 HIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEA 145
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
LEKA+P+ + MGRNI H G G GQVAK+CNN LL V M+G AEAM LGV G+ AK+L+
Sbjct: 146 LEKARPLFEAMGRNIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLA 205
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+++ SSG W+ EVYNP PGV+ N PAS +Y+GGF L+AKD+ LA++ A + T
Sbjct: 206 EIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTP 265
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
+ LA S+Y+ L+ +G ++DFS + +
Sbjct: 266 MGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQ 298
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain
enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Length = 301
Score = 341 bits (878), Expect = e-119
Identities = 87/273 (31%), Positives = 142/273 (52%), Gaps = 6/273 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +D + +GA + +A+ ++ I + LP + V +G G+L
Sbjct: 27 GVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLS 86
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G +++D S+V P ++ +A EK I ++DAPVSGGTK A+ TLT MVG ++
Sbjct: 87 ACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAV 146
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
EK +P+L +G++I H GD+G G K+ NN+LLG M +AEA+ LGVK G+ + +
Sbjct: 147 FEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQ 206
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++I SSGR ++ E S ++ GGF + L KD+ LA +
Sbjct: 207 EIIGKSSGRSYAMEAKME------KFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLP 260
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
++ +AT I++ G +D S + + + T
Sbjct: 261 MTAMATQIFEGGRAMGLGREDMSAVIKVWEQMT 293
>3qha_A Putative oxidoreductase; seattle structural genomics center for
infectious disease, S mycobacterium avium 104, rossmann
fold; 2.25A {Mycobacterium avium}
Length = 296
Score = 320 bits (823), Expect = e-110
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 5/262 (1%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
V VYD +A LA+ GA +A S++ +A+ I++L + V + +
Sbjct: 38 PGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA-QVREVVGE---LAG 93
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
HAKPG ++ ST+ L+ + + I +DAPVSGG AA L MVG D+
Sbjct: 94 HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREV 153
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E+ KP K ++H G+ G G KL NML + EAM L G++ + L
Sbjct: 154 YERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALG 213
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFK-ISLLAKDMKLAEDLANRCTAQT 252
V+ + + P + Y L KD+ LA L +
Sbjct: 214 RVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDL 273
Query: 253 DLSKLATSIYKRLMDKGCQDKD 274
L++LA + ++K+
Sbjct: 274 PLARLAYEGLAAGLGVPHKEKE 295
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG,
protein structure initiative, PSI, midwest center for
structural genomics; HET: MSE TLA; 1.65A {Salmonella
typhimurium} SCOP: a.100.1.1 c.2.1.6
Length = 299
Score = 309 bits (793), Expect = e-106
Identities = 84/270 (31%), Positives = 139/270 (51%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ ++V D+N +A + GA A + +A + II+MLP S V + G +GI++
Sbjct: 28 GYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIE 87
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + TL+ MVGGDK+
Sbjct: 88 GAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAI 147
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+K ++K M ++VH GD G G V KL N +++ + + ++EA+ L K G+N L+
Sbjct: 148 FDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVY 207
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
I + P + N+ GF+I L KD+ A D ++ AQ
Sbjct: 208 QAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLP 260
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L+ + + L G + D S + + +
Sbjct: 261 LTAAVMEMMQALRADGHGNDDHSALACYYE 290
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R geobacter metallireducens; HET: NAP;
2.07A {Geobacter metallireducens}
Length = 287
Score = 301 bits (773), Expect = e-103
Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +++++ + ++ LA GA A + + +ML + G G+L+
Sbjct: 24 GCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G +D STVDP Q + K FL+APVSG K A++ TL + GD++
Sbjct: 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++A P + MG+ I+H GD G G KL NM++G M E + LG K G+ +
Sbjct: 144 YDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAIL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
DVI + + + N+ F + + KD++LA L +R
Sbjct: 204 DVIGAGAMANPMFALKGG-------LIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLV 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
S A ++K G D+DFS I++ +
Sbjct: 257 ASAAANELFKGARAAGFGDEDFSAIFKTYE 286
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine
catabolism, NADP+, structural GEN riken structural
genomics/proteomics initiative; HET: NDP; 1.80A {Thermus
thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Length = 289
Score = 300 bits (770), Expect = e-102
Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 12/270 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
++ A + + G+ + A I + LP +++V + + +
Sbjct: 24 FPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFTCLPTTREVYEVAEA---LYP 78
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT M+GG + +
Sbjct: 79 YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEA 138
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+E+ +P L + +VH G G G K NN LL V + E + VK G++A+
Sbjct: 139 VERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKAL 197
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+VIN SSGR ++E P + + F + LL KD+ +A + + A +
Sbjct: 198 EVINASSGRSNATENLIP------QRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSP 251
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L +LA +Y+ + D D L+
Sbjct: 252 LLRLAREVYEMAKRELGPDADHVEALRLLE 281
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein;
gamma-hydroxybutyrate dehydrogenase, succinic
semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A
{Geobacter sulfurreducens}
Length = 287
Score = 296 bits (760), Expect = e-101
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G DV V+++N L GA A S + + + + I+ML + G++G+L+
Sbjct: 24 GFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + + + FL+APVSG K A++ TL + GD+S
Sbjct: 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A P +G+ +H G+ G G KL NM++G M + E M LG G++ L
Sbjct: 144 FTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+V++ + + + S + F + + KD++LA +L +R
Sbjct: 204 EVLDAGAMANPMFKGKGQ-------MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLH 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ A +KR G D+DF+ ++ L+
Sbjct: 257 GAATANESFKRARAAGHADEDFAAVFRVLE 286
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism,
tartaric acid, target 11128H, NYSGXRC, PSI-2, structural
genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Length = 303
Score = 296 bits (761), Expect = e-101
Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 9/274 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
G D N A L EGA A S A + ++ ++ + V G DG+
Sbjct: 30 GLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVA 89
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
KPG V+ SST+ Q ++ + LDAPVSGG A + +T M G ++
Sbjct: 90 HLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEA 149
Query: 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
+ + KP+L + N+ D+ G G K+ + +L GV + AEAM L + G+ +
Sbjct: 150 AFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDV 209
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251
+ DV+ ++G W E N + V+ +Y + + KD+ L D A
Sbjct: 210 MYDVVTHAAGNSWMFE--NRMQHVV-----DGDYTPRSAVDIFVKDLGLVADTAKALRFP 262
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L+ A +++ + G +D S + + +
Sbjct: 263 LPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A
{Homo sapiens}
Length = 316
Score = 281 bits (720), Expect = 1e-94
Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 7/275 (2%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L GH V V+++ + +EGA + + + + S + + + + D G
Sbjct: 49 LLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPS 108
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
G+L+ +PG +D STVD L+ + + FL+APVSG + + + L + G
Sbjct: 109 GVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG 168
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
D+ E + MG+ G+ GN L NM+ G M +AE + L G +
Sbjct: 169 DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQ 228
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
+ L D++N + N+ F + + KD++LA L +
Sbjct: 229 QTLLDILNQGQLASIFLDQKCQ-------NILQGNFKPDFYLKYIQKDLRLAIALGDAVN 281
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
T ++ A +YKR D D S +Y +
Sbjct: 282 HPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH 316
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate
dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A
{Arabidopsis thaliana}
Length = 310
Score = 279 bits (715), Expect = 5e-94
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 7/273 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V V+++ L + GA++ S + + ++ I+ML L G+L+
Sbjct: 44 GFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLE 103
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + ++ K F++ PVSG K A++ L + GDK+
Sbjct: 104 QICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKAL 163
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E++ P +G+ + G GNG KL NM++G M +E + L K G+++ L
Sbjct: 164 FEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLL 223
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
D+++ + + P ++Y F + KDM+LA L +
Sbjct: 224 DILDLGAMTNPMFKGKGP-------SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMP 276
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
++ A +K+ G D DFS + E +K
Sbjct: 277 VAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309
>1yb4_A Tartronic semialdehyde reductase; structural genomics,
oxidoreductase, salmonella typhimurium LT2, PSI, protein
ST initiative; 2.40A {Salmonella typhimurium}
Length = 295
Score = 275 bits (707), Expect = 5e-93
Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 8/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH + V + L GA + + A+ I M+P + V D G G K
Sbjct: 26 GHQLHVTTI-GPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAK 84
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ G ++D S++ P + + E +LDAPVSGG A+E TL+ MVGG++
Sbjct: 85 TSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKV 144
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++ KP+ +G+NI G +G+GQ K+ N +++ + + V+EA+ K G + +
Sbjct: 145 FDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVR 204
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ EV+ + + GFKI+L KD+ LA A
Sbjct: 205 QALMGGFASSRILEVHGE-------RMINRTFEPGFKIALHQKDLNLALQSAKALALNLP 257
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ ++ G D S + + L+
Sbjct: 258 NTATCQELFNTCAANGGSQLDHSAMVQALE 287
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas
SP}
Length = 320
Score = 254 bits (650), Expect = 5e-84
Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 9/272 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ + V+++ + +LA GA + A A+ ++SML V D G+
Sbjct: 54 GYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA-QGVAA 112
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
KPG + +D +++ P+ + + I LD PVSGGT A++ TL M GG +
Sbjct: 113 AMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPAD 172
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E++ P+LK GR H G G+GQ+ KL N M++G+T+ VAEA+ K G + +
Sbjct: 173 FERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVK 231
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ I +++ ++ ++S+ KDM+ A A
Sbjct: 232 EAITGGFADSRVLQLHGQ-------RMVERDFAPRARLSIQLKDMRNALATAQEIGFDAP 284
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
++ L +Y ++ G D D S ++ L ++
Sbjct: 285 ITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316
>3l6d_A Putative oxidoreductase; structural genomics, protein structure
initiative, oxidoredu PSI-2; HET: MSE; 1.90A
{Pseudomonas putida}
Length = 306
Score = 224 bits (574), Expect = 8e-73
Identities = 34/271 (12%), Positives = 90/271 (33%), Gaps = 9/271 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +++++ + L GA++ S+ S + I +L + + G G+
Sbjct: 32 GKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVL-GMPGVA- 89
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
A ++D +T L L + ++ + + + GD+ +
Sbjct: 90 RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREA 149
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E+ + +L+ + + V + M+ EA+ G + G+ +
Sbjct: 150 FEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTA 208
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNY-NGGFKISLLAKDMKLAEDLANRCTAQT 252
++ +S + + V + + ++ ++ + A + T
Sbjct: 209 RLLLETSRFFVADALEEAVRRLE-----TQDFKGDQARLDVHADAFAHIAQSLHAQGVWT 263
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ + +R G D+D + +
Sbjct: 264 PVFDAVCQVVQRAAAMGYGDQDIAATTKSFA 294
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 171 bits (436), Expect = 5e-52
Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 25/274 (9%)
Query: 13 QGH-DVIVYDKNT-DASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
G D+ YD + ++ + A+E G + S++ +A + I S++ A + A
Sbjct: 46 AGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVA----Q 101
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--TFLDAPVSGGTKAAQEATLTFMV 127
H G + D ++ P V + + ++ + + V K +
Sbjct: 102 QAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVD 161
Query: 128 GGDKSSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG 186
G + + G I V G+ G + K+C + +L EA+ K+G
Sbjct: 162 GDGA---RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG 218
Query: 187 MNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246
+ ++L+ + + V L + + A ++
Sbjct: 219 LADRVLASLDASFPEHHLRDLALYLVERNLEH---------ADR---RAHELGEVAATLC 266
Query: 247 RCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYE 280
+ +++ R+ K
Sbjct: 267 SVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVR 300
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 163 bits (415), Expect = 7e-49
Identities = 34/246 (13%), Positives = 78/246 (31%), Gaps = 17/246 (6%)
Query: 14 GHDVIVYDKNT------DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67
+ YD A + A E L + A+ ++S++ +
Sbjct: 48 AARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATK----AV 103
Query: 68 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV 127
+ H + ID ++V P + + +F++ V E +
Sbjct: 104 AASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA 163
Query: 128 GGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG 186
G + L +G N+ G++ G K+ ++++ + EA++ + G
Sbjct: 164 GRRA---VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG 220
Query: 187 MNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246
+ ++L V T G W + + + + + L ++
Sbjct: 221 VTERILDSVQETFPGLDWRDVADYYLSRTFE--HGARRVTEMTEAAETIESFGLNAPMS- 277
Query: 247 RCTAQT 252
R +T
Sbjct: 278 RAACET 283
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain,
protein NADP complex, structural genomics, PSI; HET:
NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
a.100.1.8 c.2.1.6
Length = 264
Score = 141 bits (357), Expect = 5e-41
Identities = 30/205 (14%), Positives = 64/205 (31%), Gaps = 14/205 (6%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G +V+ + S + + +IS + + A
Sbjct: 22 RGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRH-- 79
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
I +D + + P+ + S+L + F+DA + G + G D
Sbjct: 80 ----VRGIYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDAE 133
Query: 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
K L G NI G G+ K+ + + E + +LG+ +
Sbjct: 134 EFMK----LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDV 189
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVL 216
L +++ + G + + +
Sbjct: 190 L-EMLEYTEGNDFRESAISRLKSSC 213
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.30A {Geobacter metallireducens}
Length = 358
Score = 69.3 bits (170), Expect = 1e-13
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAE---FIISMLPAS--QDVLDAYDGS 68
GH+ +VYD N +A Q L +EG A S+ + + M+PA+ +L
Sbjct: 45 GHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQR---- 100
Query: 69 DGILKHAKPGVIVID---SSTVDPQVPQTL--SNLAREKQITFLDAPVSGGTKAAQEATL 123
+ IVID S D + ++ R + IT++D SGG +
Sbjct: 101 --MTPLLAANDIVIDGGNSHYQD-----DIRRADQMRAQGITYVDVGTSGGIFGLERGY- 152
Query: 124 TFMVGGDKSSLEKAKPILK-----------CMGRNI---------VHCGDSGNGQVAKLC 163
M+GG+K ++E+ P+ + GR +HCG SG G K+
Sbjct: 153 CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMV 212
Query: 164 NNMLLGV---TMMGVAEAMNL 181
+N G+ M AE +N+
Sbjct: 213 HN---GIEYGLMAAYAEGLNI 230
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 68.6 bits (167), Expect = 1e-13
Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 33/216 (15%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
H + + + L G A+ ++ LP ++ I+
Sbjct: 35 AHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALP----DNIIEKVAEDIVP 89
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPV----------------SGGTKA 117
+PG IV+ P R F+ P G A
Sbjct: 90 RVRPGTIVLILDAAAPYAGVMP---ERADITYFIGHPCHPPLFNDETDPAARTDYHGGIA 146
Query: 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNM---LLGVTMMG 174
Q M G + I + M + Q+A L + + +
Sbjct: 147 KQAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVET 205
Query: 175 VAEAM-NLGVKLGMNAKLLSDV----INTSSGRCWS 205
+ A+ + G++ + D +N +
Sbjct: 206 MVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG 241
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 55.8 bits (135), Expect = 5e-09
Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 22/200 (11%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEF---------IISMLPASQDVL 62
G V V+++ S+ K A+ + + A + F + ++ A
Sbjct: 24 GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT- 82
Query: 63 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 122
D+ + + K + G I++D+ + + + FL +SGG + A++
Sbjct: 83 DST--IEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP 140
Query: 123 LTFMVGGDKSSLEKAKPILKCM------GRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGV 175
F GG S E+ +PI++ GR V G G G K+ +N +
Sbjct: 141 -AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIW 199
Query: 176 AEAMNLGVKLGMNAKLLSDV 195
E ++ +G+N ++ V
Sbjct: 200 GEVFDILRAMGLNNDEVAAV 219
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 51.9 bits (124), Expect = 3e-08
Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 18/155 (11%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V+V +N + L A S E I V + S L
Sbjct: 51 GFKVVVGSRNPKRTARLFPSAAQ-VTFQEEAVSSPEVIFVA------VFREHYSSLCSLS 103
Query: 74 HAKPGVIVIDSSTVDPQ-VPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------- 123
G I++D S Q Q + A F V TL
Sbjct: 104 DQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNR 163
Query: 124 -TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 157
+ G + + MG V G +
Sbjct: 164 QVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASA 198
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 4e-06
Identities = 51/348 (14%), Positives = 102/348 (29%), Gaps = 88/348 (25%)
Query: 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ----- 59
L +F F + D L+KE + + SG + L + Q
Sbjct: 22 LSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 60 ----DVLDA-YDG-SDGILKHAK-PGVIVID-SSTVDP--QVPQTLS--NLAREKQITFL 107
+VL Y I + P ++ D Q + N++R + L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 108 DAPVSGGTKAAQEA------TLTFMVGGDKSSLE----KAKPILKCMGRNI--VHCG--D 153
+A E + ++G K+ + + + M I ++ +
Sbjct: 141 -------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 154 SGNGQVAKLCNNMLLGVTMMGVAEAMN------------------LGVKLGMNAKL-LSD 194
S + L +L + + + + L K N L L +
Sbjct: 194 SPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 195 V-----INTSSGRC------WSSEVYNPVPGVLSNVPASNNYNGGF----KISLLAK--D 237
V N + C +V + + + + ++++ SLL K D
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 238 MKLAEDLANR-CTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
+ +DL T + SI + +D ++ K+
Sbjct: 313 CR-PQDLPREVLT----TNPRRLSIIAESI------RDGLATWDNWKH 349
Score = 46.8 bits (110), Expect = 5e-06
Identities = 44/310 (14%), Positives = 92/310 (29%), Gaps = 58/310 (18%)
Query: 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD 60
++ L+ Q + + +D S + ++ L L + +L
Sbjct: 198 VLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----- 248
Query: 61 VLDAYDGSDG-ILKHAKPG--VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKA 117
VL + + +++ T QV LS A I+ LD T
Sbjct: 249 VLL--NVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSA-ATTTHIS-LDHHSMTLTPD 301
Query: 118 AQEATLTFMVGGDKSSL-EKAK---PILKCM-GRNIVHCGDSGNG----QVAKLCNNMLL 168
++ L + L + P + +I + + KL +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 169 GVTMMGVAEAMNLGVKLGM---NAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNY 225
+ ++ AE + +L + +A + + ++ W + + V V+
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVV--------- 408
Query: 226 NGGFKISLLAKDMK--------LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDK---- 273
N K SL+ K K + +L + + L + Y + D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPP 467
Query: 274 -DFSYIYEFL 282
Y Y +
Sbjct: 468 YLDQYFYSHI 477
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAYD 66
G+ V +++++ + ++ + E L ++ E I+ M+ A DA
Sbjct: 38 GYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT-DAA- 95
Query: 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-- 124
D + + G I+ID Q + + F+ VSGG + A L
Sbjct: 96 -IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGA----LKGP 150
Query: 125 -FMVGGDKSSLEKAKPILK 142
M GG K + E PIL
Sbjct: 151 SIMPGGQKEAYELVAPILT 169
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES P33;
2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Length = 474
Score = 43.7 bits (104), Expect = 4e-05
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAYD 66
G+ V +Y++ T ++ + KE + L +L E I+ M+ A DA
Sbjct: 28 GYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT-DAT- 85
Query: 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-- 124
+L G I+ID + + I F+ VSGG K A L
Sbjct: 86 -IKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGA----LLGP 140
Query: 125 -FMVGGDKSSLEKAKPILK 142
M GG K + + PI +
Sbjct: 141 SMMPGGQKEAYDLVAPIFE 159
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 41.6 bits (97), Expect = 1e-04
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ V+ +N S L GA + + ++++ D L L
Sbjct: 42 GYSVVFGSRNPQVSSLLP-RGAEVLCYSEAASRSDVIVLAVHREHYDFLAE-------LA 93
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL---------- 123
+ G ++ID S SN Q+ A V L
Sbjct: 94 DSLKGRVLIDVSNNQKMNQYPESNAEYLAQL-VPGAHVVKAFNTISAWALQSGTLDASRQ 152
Query: 124 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 157
F+ G D + ++ I + +G + G
Sbjct: 153 VFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAA 186
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 41.8 bits (99), Expect = 2e-04
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 14 GHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAY 65
G V +++ LA E + SL + S + II ++ A Q V D +
Sbjct: 25 GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV-DNF 83
Query: 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTF 125
+ ++ G I+ID + + ++K I F+ + VSGG A+ +
Sbjct: 84 --IEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SL 140
Query: 126 MVGGDKSSLEKAKPILK 142
M GG+K + K I +
Sbjct: 141 MPGGNKEAWPHIKAIFQ 157
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 40.7 bits (96), Expect = 4e-04
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 14 GHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAY 65
G V Y++ LA E ++ S+ S + ++ ++ A V DA
Sbjct: 33 GFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV-DAL 91
Query: 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTF 125
+ I+ + G I+ID ++K I F+ + VSGG + A+ +
Sbjct: 92 --INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SL 148
Query: 126 MVGGDKSSLEKAKPILK 142
M GG + + K I +
Sbjct: 149 MPGGSEEAWPHIKNIFQ 165
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 39.9 bits (93), Expect = 6e-04
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 16/102 (15%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMAL------SLSTLASGAEFIISMLPASQDVLDAYD 66
DV + D N + + + + + + L + E +I LP
Sbjct: 37 DEFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGF----- 91
Query: 67 GSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107
+K A K V ++D S P+ P L + A + Q+T +
Sbjct: 92 ---KSIKAAIKSKVDMVDVSF-MPENPLELRDEAEKAQVTIV 129
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 39.1 bits (90), Expect = 7e-04
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 7/141 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH+V Y A+ + ++ + D ++ +
Sbjct: 42 GHEVTYYGSKDQATT------LGEIVIMAVPYPALAALAKQYATQLKGKIVVDITNPLNF 95
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV-GGDKS 132
++V S+ ++ Q L + K A + + T +V G D S
Sbjct: 96 DTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDS 155
Query: 133 SLEKAKPILKCMGRNIVHCGD 153
+ ++ L + G
Sbjct: 156 AKQRFTRALADSPLEVKDAGK 176
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.001
Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 29/140 (20%)
Query: 27 SQTLAKEGANMA-LSL---STLASGAEFIISMLPASQDVLD--AYDGSDGILKHAKPGVI 80
S+ L A A SL + LAS A+ ++S+ + +++ Y G ++ A P
Sbjct: 1749 SKGLIPADATFAGHSLGEYAALASLAD-VMSI----ESLVEVVFYRGM--TMQVAVPRDE 1801
Query: 81 VIDSST----VDP-QVPQTLSNLAREKQITFLDAPVSGGTKAAQEA------TLTFMVGG 129
+ S+ ++P +V + S ++ + ++ V T E ++ G
Sbjct: 1802 LGRSNYGMIAINPGRVAASFS----QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 130 DKSSLEKAKPILKCMG-RNI 148
D +L+ +L + + I
Sbjct: 1858 DLRALDTVTNVLNFIKLQKI 1877
Score = 31.6 bits (71), Expect = 0.36
Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 30/100 (30%)
Query: 10 LQFQGHD--VIVYDKNTDASQTLAKEGANM-ALSLSTLASGAEFIISM---------LPA 57
+ F D + VYD G+++ LS S + II + A
Sbjct: 448 VSFNAKDIQIPVYDTFD---------GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 58 SQDVLDAYD--GSDGI---LKHAKPG--VIVIDSSTVDPQ 90
+ +LD + G+ G+ K G V VI + T+D
Sbjct: 499 TH-ILD-FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN 536
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 36.0 bits (82), Expect = 0.013
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 22/139 (15%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALS--------LSTLASGAEFIISMLPASQDV 61
+V V + +Q LAK + A+S L + + + +IS++P +
Sbjct: 43 AANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHP 102
Query: 62 LDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL----DAPVSGGTK 116
++K A + V+ SS + P + L + IT + P
Sbjct: 103 --------NVVKSAIRTKTDVVTSSYISPA-LRELEPEIVKAGITVMNEIGLDPGIDHLY 153
Query: 117 AAQEATLTFMVGGDKSSLE 135
A + GG S
Sbjct: 154 AVKTIDEVHRAGGKLKSFL 172
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 35.3 bits (80), Expect = 0.020
Identities = 21/162 (12%), Positives = 47/162 (29%), Gaps = 28/162 (17%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANM---------ALSLSTLASGAEFIISMLPASQDVLDA 64
G V V + ++++ L+ + +L + + +IS++P +
Sbjct: 26 GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA--- 82
Query: 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL----DAPVSGGTKAAQE 120
++K A + +++ L A++ IT + P A +
Sbjct: 83 -----TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKT 137
Query: 121 ATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKL 162
GG + + S N K
Sbjct: 138 IEEVHAAGGKIKTFL-------SYCGGLPAPESSDNPLGYKF 172
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 32.3 bits (74), Expect = 0.13
Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 28/148 (18%)
Query: 9 FLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLP--ASQDVLDAYD 66
+L+ G+ + + D+ +A+ + + A+ +I +P + + ++
Sbjct: 40 YLRASGYPISILDRED---WAVAES----------ILANADVVIVSVPINLTLETIER-- 84
Query: 67 GSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTKAAQEA-TL 123
+ + +++ D +S + + L L P+ G A+ +
Sbjct: 85 ----LKPYLTENMLLADLTSVKREPLAKMLEVHTGA----VLGLHPMFGADIASMAKQVV 136
Query: 124 TFMVGGDKSSLEKAKPILKCMGRNIVHC 151
G E ++ G I
Sbjct: 137 VRCDGRFPERYEWLLEQIQIWGAKIYQT 164
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 31.5 bits (71), Expect = 0.25
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDG 70
G V V + +D +A+ G +S A + I+ +PA V+ A
Sbjct: 178 GAKVKVGARESDLLARIAEMGME-PFHISKAAQELRDVDVCINTIPAL--VVTA-----N 229
Query: 71 ILKHAKPGVIVID 83
+L VID
Sbjct: 230 VLAEMPSHTFVID 242
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 30.6 bits (70), Expect = 0.44
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLP--ASQDVLDAYDGSD 69
+GH +I + + + + A +L A+ I P L+
Sbjct: 22 RGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEK----- 76
Query: 70 GILKHAKPGVIVID 83
++ H P IV D
Sbjct: 77 -LIPHLSPTAIVTD 89
>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl
aminopeptidase, structura genomics; 2.39A {Cytophaga
hutchinsonii atcc 33406}
Length = 321
Score = 29.6 bits (67), Expect = 1.2
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITF-LDAPVSGGTKAA 118
+ + D + + LAR+ I F L+ +G +
Sbjct: 232 VAISMRDRMIPRKKYVNRIIELARQTDIPFQLEVEGAGASDGR 274
>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled
dodecamer, hyperthermophilic; 2.24A {Pyrococcus
horikoshii} PDB: 2cf4_A
Length = 332
Score = 29.1 bits (66), Expect = 1.5
Identities = 11/63 (17%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 61 VLDAYDGSDGILKHAK----PGVIVIDSSTV-DPQVPQTLSNLAREKQITFLDAPVSGGT 115
+D++ + K P + +D+S + + + + ++A + I GGT
Sbjct: 226 AIDSFACCSPLTGDVKLGKGPVIRAVDNSAIYSRDLARKVWSIAEKNGIEIQIGVTGGGT 285
Query: 116 KAA 118
A+
Sbjct: 286 DAS 288
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 29.3 bits (65), Expect = 1.8
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 3/103 (2%)
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ P ++ + S D TL+ + + +++ + + S
Sbjct: 215 NGSPWILCVASGHTDRTFAGTLTL---GNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCS 271
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVA 176
E+ ++ IV C D+G+ + ++
Sbjct: 272 SEELLSQVENPENTIVICDDNGDFSDQMRIITRARLKAAIFIS 314
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S
specificity, metallopeptidase M42, hydrolas; 2.70A
{Streptococcus pneumoniae}
Length = 355
Score = 28.8 bits (65), Expect = 2.3
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 60 DVLDAYDGSDGILKHAK-PGVIVIDSSTV-DPQVPQTLSNLAREKQITFLDAPVSGGTKA 117
D A D G K + D + P + L A E I + GGT A
Sbjct: 237 DCSPAGDVYGGQGKIGDGTLIRFYDPGHLLLPGMKDFLLTTAEEAGIKYQYYCGKGGTDA 296
Query: 118 A 118
Sbjct: 297 G 297
>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1
c.56.5.4
Length = 340
Score = 28.4 bits (64), Expect = 2.9
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 77 PGVIVIDSSTV-DPQVPQTLSNLAREKQITF-LDAPVSGGTKAA 118
P + V ++ QT+ + A+ I F + +GGT A
Sbjct: 243 PAITFYHRGYVIPKEIFQTIVDTAKNNDIPFQMKRRTAGGTDAG 286
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 24 TDASQTLAKEGANMALSLSTLASG----AEFIISMLPASQDVLDAYDG--SDGILKHAKP 77
+++ A++ + L G + +L D L + + G++ +
Sbjct: 218 IPEYTSISHIIADLVPDGACLQMGVGALPNLVCGVLKDRND-LGIHTEVLNPGLVDLIRR 276
Query: 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108
GV+ T+D + +++ +L+
Sbjct: 277 GVVTNQRKTLDRGRSVFTFAMGQQEMYEYLN 307
>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown
function; HET: MSE; 1.90A {Bacillus subtilis} SCOP:
b.49.3.1 c.56.5.4
Length = 373
Score = 28.0 bits (63), Expect = 3.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 77 PGVIVIDSSTV-DPQVPQTLSNLAREKQITF-LDAPVSGGTKAA 118
P +IV D+S V + + A E I + DA GGT +
Sbjct: 262 PQIIVYDASMVSHKGLRDAVVATAEEAGIPYQFDAIAGGGTDSG 305
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 28.1 bits (63), Expect = 3.8
Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 31/104 (29%)
Query: 9 FLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTL--------ASGAEFIISMLPASQD 60
F G V +YD + N+ + +L + AE +S++ + +
Sbjct: 25 FAS-GGFRVKLYDIEPRQ---ITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTN 80
Query: 61 VLDAYDGSDGI---------LKH---------AKPGVIVIDSST 86
+ +A +G I LK V+ + SS+
Sbjct: 81 LAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVV-LSSSS 123
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 28.0 bits (62), Expect = 4.4
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 12/98 (12%)
Query: 44 LASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS------STVDPQVPQTLSN 97
I+ P S + D + KP I IDS + Q +
Sbjct: 339 ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIG 398
Query: 98 L---AREKQITFL---DAPVSGGTKAAQEATLTFMVGG 129
+ A++++IT L + G + ++ ++ +
Sbjct: 399 VTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDT 436
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 27.1 bits (61), Expect = 6.7
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 65 YDGS---DGILKHAKPGVIVIDSSTVD-PQVPQTLSNLARE 101
Y GS +L++ K + +S+ +D ++ +
Sbjct: 36 YAGSLVNPELLEYCKEDCQIHNSAHMDLQEIIDVMREGIEN 76
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A
{Rhodobacter capsulatus} PDB: 3nei_A
Length = 264
Score = 27.1 bits (61), Expect = 6.7
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 65 YDGS---DGILKHAKPGVIVIDSSTVD-PQVPQTLSNLARE 101
Y GS + +L H PG +++++ + + T++
Sbjct: 35 YAGSLVPEALLAHCPPGAKIVNTAPMSLDAIIDTIAEAHAA 75
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural
genomics, protein structure initiative; 2.40A
{Methanosarcina mazei GO1}
Length = 478
Score = 27.2 bits (61), Expect = 7.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 65 YDGSDGILKHAKPGVIVIDSSTVDP 89
DG + K+ KPG++V+ ST+ P
Sbjct: 127 IDGIRNVGKYLKPGMLVVLESTITP 151
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 26.8 bits (60), Expect = 8.8
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 7/51 (13%)
Query: 9 FLQFQGHDVIVYDKNT----DASQTLAKEGANMAL---SLSTLASGAEFII 52
L G V V D +Q+L +EG + L L ++I
Sbjct: 27 LLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMI 77
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 26.8 bits (60), Expect = 8.9
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 65 YDGS---DGILKHAKPGVIVIDSSTVD-PQVPQTLSNLARE 101
Y S ++ +KPG V+ ++ + ++ T+ + RE
Sbjct: 52 YADSLVSQDLIAKSKPGAEVLKTAGMHLEEMVGTMLDRMRE 92
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Length = 302
Score = 26.4 bits (59), Expect = 9.7
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 94 TLSNLAREKQITFLDAPVSGGTKAAQEATL 123
L ++ I + PV K A +
Sbjct: 144 DLRSMVEWHDIPYYHVPVDPKDKEPAFAEV 173
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain,
structural genomics, joint C structural genomics, JCSG;
HET: MSE; 2.25A {Pseudomonas putida}
Length = 286
Score = 26.4 bits (59), Expect = 9.9
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 94 TLSNLAREKQITFLDAPVSGGTKAAQEATL 123
L LA +I + + K QE +
Sbjct: 129 DLEPLAHWHKIPYYHFALDPKDKPGQERKV 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,100,704
Number of extensions: 236441
Number of successful extensions: 780
Number of sequences better than 10.0: 1
Number of HSP's gapped: 729
Number of HSP's successfully gapped: 67
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.0 bits)