RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy764
(286 letters)
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 118 bits (297), Expect = 9e-34
Identities = 53/143 (37%), Positives = 84/143 (58%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ ++V D+N +A + GA A + +A + II+MLP S V + G +
Sbjct: 19 LLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GI++ AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + TL+ MVGG
Sbjct: 79 GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG 138
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
DK+ +K ++K M ++VH G
Sbjct: 139 DKAIFDKYYDLMKAMAGSVVHTG 161
>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 134
Score = 113 bits (284), Expect = 4e-32
Identities = 62/129 (48%), Positives = 88/129 (68%)
Query: 154 SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVP 213
G GQVAK+CNN LL V M+G AEAM LGV G+ AK+L++++ SSG W+ EVYNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 214 GVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDK 273
GV+ N PAS +Y+GGF L+AKD+ LA++ A + T + LA S+Y+ L+ +G ++
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 274 DFSYIYEFL 282
DFS + +
Sbjct: 122 DFSVVQKLF 130
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 111 bits (277), Expect = 9e-31
Identities = 66/143 (46%), Positives = 85/143 (59%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ + V+D A L GA+ A S GA+ +ISMLPASQ V Y D
Sbjct: 20 LLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 79
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
G+L H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A TLTFMVGG
Sbjct: 80 GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG 139
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
D +LEKA+P+ + MGRNI H G
Sbjct: 140 DAEALEKARPLFEAMGRNIFHAG 162
>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 133
Score = 95.1 bits (236), Expect = 4e-25
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 153 DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPV 212
D G G V KL N +++ + + ++EA+ L K G+N L+ I + P+
Sbjct: 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60
Query: 213 PGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQD 272
+ P GF+I L KD+ A D ++ AQ L+ + + L G +
Sbjct: 61 VMDRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGN 113
Query: 273 KDFSYIYEFLKNKT 286
D S + + +
Sbjct: 114 DDHSALACYYEKLA 127
>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase
{Thermus thermophilus [TaxId: 274]}
Length = 132
Score = 93.2 bits (231), Expect = 2e-24
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPG 214
G G K NN LL V + E + VK G++A+ +VIN SSGR ++E P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR- 60
Query: 215 VLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKD 274
+ + F + LL KD+ +A + + A + L +LA +Y+ + D D
Sbjct: 61 -----VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 275 FSYIYEFLKNKT 286
L+
Sbjct: 116 HVEALRLLERWG 127
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 79.6 bits (195), Expect = 6e-19
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L + ++ A + + G+ + + Y+ ++
Sbjct: 19 LARRFPTLVWNRTFEKALRHQEEFGSEA-----VPLERVAEARVIFTCLPTTREVYEVAE 73
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+ + + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT M+GG
Sbjct: 74 ALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG 133
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
+ ++E+ +P L + +VH G
Sbjct: 134 PEEAVERVRPFL-AYAKKVVHVG 155
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 75.8 bits (185), Expect = 3e-17
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGS 68
+ +G V V+++ S+ K A+ + + E + L + L
Sbjct: 20 IAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79
Query: 69 DGI-------LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
K + G I++D+ + + + FL +SGG +
Sbjct: 80 AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEG-ARK 138
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNIV----HCGDSGNG 157
F GG S E+ +PI++ +G+G
Sbjct: 139 GPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin
hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii
[TaxId: 2190]}
Length = 242
Score = 72.3 bits (177), Expect = 1e-15
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 4/117 (3%)
Query: 34 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQ 93
G + GA+ +I+ LP D G IV + T+
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKK---FADAIPEGAIVTHACTIPTTKFA 184
Query: 94 TLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH 150
+ + + + G + + ++ K I K
Sbjct: 185 KIFKDLGREDLNI-TSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFK 240
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 69.9 bits (170), Expect = 2e-15
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 12/144 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L+ +G +V+ + S + + +IS + + A
Sbjct: 19 LRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGR 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+ +D + + P+ + S+L ++ F+DA + G + G
Sbjct: 79 HVRGI------YVDINNISPETVRMASSLI--EKGGFVDAAIMGSVRRKGADIRIIASGR 130
Query: 130 DKSSLEKAKPILKCMGRNIVHCGD 153
D K L G NI G
Sbjct: 131 DAEEFMK----LNRYGLNIEVRGR 150
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 57.7 bits (138), Expect = 7e-11
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 6/144 (4%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMAL-----SLSTLASGAEFIISMLPASQDVLDA 64
+ G V +++ A SL + S + ++ +
Sbjct: 21 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80
Query: 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT 124
+ + ++ G I+ID + + ++K I F+ + VSGG +
Sbjct: 81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDG-ARYGPS 139
Query: 125 FMVGGDKSSLEKAKPILKCMGRNI 148
M GG+K + K I + + +
Sbjct: 140 LMPGGNKEAWPHIKAIFQGIAAKV 163
>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA
{Haemophilus influenzae [TaxId: 727]}
Length = 152
Score = 53.3 bits (127), Expect = 2e-09
Identities = 6/93 (6%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT--FLDAPVSGGTKA 117
+ + + + + +++ D ++V + + + + +
Sbjct: 62 PINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIAS--- 118
Query: 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH 150
+ + G E ++ G I
Sbjct: 119 MAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 52.3 bits (124), Expect = 4e-09
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 10/140 (7%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
+ ++ D ++ LA+ A +L + ++P ++ +
Sbjct: 22 YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIK----TVANHLNL 77
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
V + + I + S + + F + GD+
Sbjct: 78 GDAVLVHCSGFLSSEIFKKS------GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERG 131
Query: 134 LEKAKPILKCMGRNIVHCGD 153
L K I + +
Sbjct: 132 LPIVKKIAEEISGKYFVIPS 151
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 49.4 bits (116), Expect = 6e-08
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L+ +GH +I + + + II + Q +L +
Sbjct: 19 LRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLI 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ-ITFLDAPVSGGTKAAQE-------A 121
H P IV D ++V + + S L + + G A+E
Sbjct: 79 ---PHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNIVHC 151
LT D L + +L+ +G I C
Sbjct: 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 212
Score = 40.0 bits (92), Expect = 1e-04
Identities = 20/188 (10%), Positives = 49/188 (26%), Gaps = 23/188 (12%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG-- 70
GH+++V + + ++ A E +A S E + + D
Sbjct: 23 LGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTAR 82
Query: 71 ----------------ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114
+ G + V + L + + + A
Sbjct: 83 DLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFAN 142
Query: 115 TKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMG 174
+ + D+S I + G + G N ++ + ++ +
Sbjct: 143 LDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLI-----LN 197
Query: 175 VAEAMNLG 182
+ +G
Sbjct: 198 IMRFNGMG 205
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 28.8 bits (63), Expect = 0.74
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 109 APVSGGTKAAQEATLTFMVGGDKSSL 134
A V G + A + TL G + SL
Sbjct: 1 ADVPAGVQLADKQTLVRNNGSEVQSL 26
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase
{Soil-living yeast (Trichosporon cutaneum) [TaxId:
5554]}
Length = 360
Score = 28.5 bits (62), Expect = 1.1
Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 19/73 (26%)
Query: 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDA 64
L + Q V + DK + G L + + L
Sbjct: 26 LSEYVRQKPDLKVRIIDKRSTKVYN----GQADGLQ---------------CRTLESLKN 66
Query: 65 YDGSDGILKHAKP 77
+D IL A
Sbjct: 67 LGLADKILSEAND 79
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 27.2 bits (59), Expect = 2.1
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 19/91 (20%)
Query: 14 GHDVIVYDKNTDASQTLAKEGAN---------------MALSLSTLASGAEFIISMLPAS 58
G V+ +D + + + GA + + A+ I+ ++PA
Sbjct: 24 GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI 83
Query: 59 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 89
A + I + G ++I +
Sbjct: 84 HHASIAAN----IASYISEGQLIILNPGATG 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.371
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 969,085
Number of extensions: 41469
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 20
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)