BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7641
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 33 GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
G AF+L ERQQL IHGL+PP QD Q+ ++ R DL+++ L LQ
Sbjct: 15 GXAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLXSLQ 67
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G+AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L K+ Y+ +Q
Sbjct: 14 RTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQ 70
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L K+ Y+ +Q
Sbjct: 33 RTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQ 89
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L K+ Y+ +Q
Sbjct: 33 RTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQ 89
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L K+ Y+ +Q
Sbjct: 11 RTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQ 67
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Atp, Mn++, And
Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Atp, Mn++, And
Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Atp, Mn++, And
Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Atp, Mn++, And
Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Cofactor Nadh, Mn++, And
Allosteric Activator Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Cofactor Nadh, Mn++, And
Allosteric Activator Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Cofactor Nadh, Mn++, And
Allosteric Activator Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Malate, Cofactor Nadh, Mn++, And
Allosteric Activator Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Pyruvate, Cofactor Nad+, Mn++,
And Allosteric Activator Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Pyruvate, Cofactor Nad+, Mn++,
And Allosteric Activator Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Pyruvate, Cofactor Nad+, Mn++,
And Allosteric Activator Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme In A Pentary Complex
With Natural Substrate Pyruvate, Cofactor Nad+, Mn++,
And Allosteric Activator Fumarate
Length = 564
Score = 50.1 bits (118), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L K+ Y+ +Q
Sbjct: 13 RTNKGXAFTLQERQXLGLQGLLPPKIETQDIQALRFHRNLKKXTSPLEKYIYIXGIQ 69
>pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1LLQ|B Chain B, Crystal Structure Of Malic Enzyme From Ascaris Suum
Complexed With Nicotinamide Adenine Dinucleotide
pdb|1O0S|A Chain A, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
pdb|1O0S|B Chain B, Crystal Structure Of Ascaris Suum Malic Enzyme Complexed
With Nadh
Length = 605
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 29 RQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
R + G+ FSL ERQ LG+HGL+PP Q+QQ +R DL ++ L LQ
Sbjct: 47 RLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQ 103
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 34 LAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85
LAF+L ERQQL IHGL+PP+ +Q+ Q+ ++ D +++ L +LQ
Sbjct: 39 LAFTLEERQQLNIHGLLPPSFNSQEIQVLRVVKNFEHLNSDFDRYLLLMDLQ 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,248,839
Number of Sequences: 62578
Number of extensions: 68518
Number of successful extensions: 115
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 8
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)