Query psy7641
Match_columns 85
No_of_seqs 131 out of 692
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 23:38:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1o0s_A NAD-ME, NAD-dependent m 99.9 2.6E-23 9E-28 167.9 4.7 82 4-85 9-103 (605)
2 1pj3_A NAD-dependent malic enz 99.9 1E-22 3.5E-27 163.6 5.3 65 21-85 2-69 (564)
3 1gq2_A Malic enzyme; oxidoredu 99.9 1.2E-22 4E-27 163.0 5.3 64 22-85 1-67 (555)
4 1k1f_A Breakpoint cluster regi 38.8 11 0.00038 22.6 1.0 31 54-84 28-62 (72)
5 3gtz_A Putative translation in 30.1 30 0.001 21.7 2.1 26 45-70 25-50 (124)
6 3lyb_A Putative endoribonuclea 28.7 18 0.00061 24.1 0.9 34 37-70 47-82 (165)
7 3kjj_A NMB1025 protein; YJGF p 27.3 50 0.0017 20.9 2.8 27 44-70 30-56 (128)
8 1qu9_A YJGF protein; structura 26.2 52 0.0018 20.4 2.8 16 55-70 44-59 (128)
9 1qd9_A Purine regulatory prote 24.4 56 0.0019 20.2 2.6 16 55-70 43-58 (124)
10 2dyy_A UPF0076 protein PH0854; 23.4 61 0.0021 20.0 2.7 16 55-70 45-60 (126)
11 1c20_A DEAD ringer protein; DN 20.8 85 0.0029 19.7 3.0 28 56-84 3-30 (128)
12 2b33_A Protein synthesis inhib 20.2 73 0.0025 20.4 2.6 16 55-70 57-72 (140)
No 1
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*
Probab=99.87 E-value=2.6e-23 Score=167.89 Aligned_cols=82 Identities=33% Similarity=0.510 Sum_probs=72.3
Q ss_pred eeeecccCCCCCc----------ceecccchhhhhhCC---CCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhc
Q psy7641 4 VYQLGIEDEQGFP----------SSQVNLRLHSILRQS---MGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRR 70 (85)
Q Consensus 4 ~~~~~~~~~~~~~----------~~~~~~~g~~~l~~p---KGtaFt~eER~~lgl~GLLPp~v~tle~Q~~R~~~~l~~ 70 (85)
|||-+..+.+-.. ...+..+|.++|+|| ||||||.+||++|||+|||||+|+|+|+|++||+.++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~ 88 (605)
T 1o0s_A 9 VYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLRE 88 (605)
T ss_dssp TTCCSCCCCCHHHHHHHHHHSCCCCCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHH
T ss_pred HhhcCCCcccccccccccccCCCccccCcchHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHc
Confidence 5666655554322 355678999999999 999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHhcC
Q psy7641 71 FQEDLNKFTYLSELQ 85 (85)
Q Consensus 71 ~~t~L~Ky~yL~~L~ 85 (85)
+++||+||+||++|+
T Consensus 89 ~~~~l~k~~~L~~L~ 103 (605)
T 1o0s_A 89 QPNDLARYIQLDGLQ 103 (605)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhh
Confidence 999999999999985
No 2
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Probab=99.86 E-value=1e-22 Score=163.58 Aligned_cols=65 Identities=32% Similarity=0.635 Sum_probs=62.8
Q ss_pred ccchhhhhhCC---CCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhccCChhhHHHHHHhcC
Q psy7641 21 NLRLHSILRQS---MGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85 (85)
Q Consensus 21 ~~~g~~~l~~p---KGtaFt~eER~~lgl~GLLPp~v~tle~Q~~R~~~~l~~~~t~L~Ky~yL~~L~ 85 (85)
..+|.++|+|| ||||||.+||++|||+|||||+|+|+|+|++||+.+++++++||+||+||++|+
T Consensus 2 ~~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~ 69 (564)
T 1pj3_A 2 KEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQ 69 (564)
T ss_dssp CCCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred CCchHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 46799999999 999999999999999999999999999999999999999999999999999985
No 3
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A
Probab=99.86 E-value=1.2e-22 Score=162.99 Aligned_cols=64 Identities=41% Similarity=0.673 Sum_probs=61.9
Q ss_pred cchhhhhhCC---CCCCCCHHHHhhcccCCCCCCcccCHHHHHHHHHHHhhccCChhhHHHHHHhcC
Q psy7641 22 LRLHSILRQS---MGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYLSELQ 85 (85)
Q Consensus 22 ~~g~~~l~~p---KGtaFt~eER~~lgl~GLLPp~v~tle~Q~~R~~~~l~~~~t~L~Ky~yL~~L~ 85 (85)
++|.++|+|| ||||||.+||++|||+|||||+|+|+|+|++||+.+++++++||+||+||++|+
T Consensus 1 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~ 67 (555)
T 1gq2_A 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQ 67 (555)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhc
Confidence 3699999999 999999999999999999999999999999999999999999999999999985
No 4
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil, BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP: a.147.1.1
Probab=38.76 E-value=11 Score=22.59 Aligned_cols=31 Identities=32% Similarity=0.744 Sum_probs=24.0
Q ss_pred ccCHHHHHHHHHHHhhccCChhhH--H--HHHHhc
Q psy7641 54 IKNQDQQIEVCRESVRRFQEDLNK--F--TYLSEL 84 (85)
Q Consensus 54 v~tle~Q~~R~~~~l~~~~t~L~K--y--~yL~~L 84 (85)
|.++|++.++|.+.++..+-.+.| | |||..|
T Consensus 28 vgdiEqeLe~Ck~sIrrLE~evn~ErFrmIYLQTl 62 (72)
T 1k1f_A 28 VGDIEQELERAKASIRRLEQEVNQERFRMIYLQTL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567999999999999988876643 3 577654
No 5
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=30.12 E-value=30 Score=21.69 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=19.9
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHhhc
Q psy7641 45 GIHGLMPPTIKNQDQQIEVCRESVRR 70 (85)
Q Consensus 45 gl~GLLPp~v~tle~Q~~R~~~~l~~ 70 (85)
-+.|.+|-...++++|++.|+.++.+
T Consensus 25 fvSGq~~~d~~d~~~Q~~~~l~nl~~ 50 (124)
T 3gtz_A 25 WYTGVPENLDADAFEQTANTLAQIDA 50 (124)
T ss_dssp EEEECCSCTTSCHHHHHHHHHHHHHH
T ss_pred EEeccCCCCCCCHHHHHHHHHHHHHH
Confidence 35566665567999999999999864
No 6
>3lyb_A Putative endoribonuclease; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.66A {Klebsiella pneumoniae}
Probab=28.71 E-value=18 Score=24.15 Aligned_cols=34 Identities=26% Similarity=0.168 Sum_probs=23.7
Q ss_pred CHHHHhhcccCCCCC--CcccCHHHHHHHHHHHhhc
Q psy7641 37 SLRERQQLGIHGLMP--PTIKNQDQQIEVCRESVRR 70 (85)
Q Consensus 37 t~eER~~lgl~GLLP--p~v~tle~Q~~R~~~~l~~ 70 (85)
..++|+++|-.|.+- -.+.++++|++.|+.++.+
T Consensus 47 ~~~~~~~~g~~G~~g~~~~~~d~~~Qt~~~l~Ni~a 82 (165)
T 3lyb_A 47 PEPVRELLGATGEFSTDAKQGPILAQSWYVLESIRR 82 (165)
T ss_dssp CHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccCHHHHHHHHHHHHHH
Confidence 456777777666432 2234889999999999864
No 7
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics, oxford protein production facility, UN function; 1.90A {Neisseria meningitidis serogroup B} PDB: 3kjk_A
Probab=27.30 E-value=50 Score=20.88 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=20.4
Q ss_pred cccCCCCCCcccCHHHHHHHHHHHhhc
Q psy7641 44 LGIHGLMPPTIKNQDQQIEVCRESVRR 70 (85)
Q Consensus 44 lgl~GLLPp~v~tle~Q~~R~~~~l~~ 70 (85)
+-+.|.+|-.-.++++|.+.|+.++..
T Consensus 30 lfvSGq~~~d~~d~~~Q~~~~l~nl~~ 56 (128)
T 3kjj_A 30 IFLSGMVPENGETAAEQTADVLAQIDR 56 (128)
T ss_dssp EEECCBCCSSCSSHHHHHHHHHHHHHH
T ss_pred EEEeecCCCCCCCHHHHHHHHHHHHHH
Confidence 345666665468999999999998854
No 8
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=26.17 E-value=52 Score=20.42 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=14.1
Q ss_pred cCHHHHHHHHHHHhhc
Q psy7641 55 KNQDQQIEVCRESVRR 70 (85)
Q Consensus 55 ~tle~Q~~R~~~~l~~ 70 (85)
.++++|.+.|+.++.+
T Consensus 44 ~d~~~Q~~~~l~ni~~ 59 (128)
T 1qu9_A 44 ADVAAQARQSLDNVKA 59 (128)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 8899999999999854
No 9
>1qd9_A Purine regulatory protein YABJ; perchloric acid soluble protein, purine regulation, YJGF/YER057C family, gene regulation; 1.70A {Bacillus subtilis} SCOP: d.79.1.1
Probab=24.40 E-value=56 Score=20.23 Aligned_cols=16 Identities=6% Similarity=0.090 Sum_probs=13.9
Q ss_pred cCHHHHHHHHHHHhhc
Q psy7641 55 KNQDQQIEVCRESVRR 70 (85)
Q Consensus 55 ~tle~Q~~R~~~~l~~ 70 (85)
.++++|.+.|+.++.+
T Consensus 43 ~d~~~Q~~~~l~ni~~ 58 (124)
T 1qd9_A 43 GDIKEQTHQVFSNLKA 58 (124)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7899999999998854
No 10
>2dyy_A UPF0076 protein PH0854; putative translation initiation inhibitor, trimer, structural genomics, NPPSFA; 2.60A {Pyrococcus horikoshii}
Probab=23.36 E-value=61 Score=20.04 Aligned_cols=16 Identities=13% Similarity=0.192 Sum_probs=13.9
Q ss_pred cCHHHHHHHHHHHhhc
Q psy7641 55 KNQDQQIEVCRESVRR 70 (85)
Q Consensus 55 ~tle~Q~~R~~~~l~~ 70 (85)
.++++|.+.|+.++.+
T Consensus 45 ~d~~~Q~~~~l~ni~~ 60 (126)
T 2dyy_A 45 GDIKDQTRQVLENIKA 60 (126)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7899999999999854
No 11
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=20.79 E-value=85 Score=19.75 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHhhccCChhhHHHHHHhc
Q psy7641 56 NQDQQIEVCRESVRRFQEDLNKFTYLSEL 84 (85)
Q Consensus 56 tle~Q~~R~~~~l~~~~t~L~Ky~yL~~L 84 (85)
|.|+|.+++ .++...+.+-++-.||..|
T Consensus 3 ~~~~~fk~i-qrl~el~~~~~~~~Fl~~L 30 (128)
T 1c20_A 3 SFEEQFKQV-RQLYEINDDPKRKEFLDDL 30 (128)
T ss_dssp CHHHHHHHH-HHHHHTCCCHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHccCCchHHHHHHHHH
Confidence 678999886 4555555556777777665
No 12
>2b33_A Protein synthesis inhibitor, putative; putative endoribonuclease, STRU genomics, joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: d.79.1.1
Probab=20.16 E-value=73 Score=20.38 Aligned_cols=16 Identities=13% Similarity=0.223 Sum_probs=13.9
Q ss_pred cCHHHHHHHHHHHhhc
Q psy7641 55 KNQDQQIEVCRESVRR 70 (85)
Q Consensus 55 ~tle~Q~~R~~~~l~~ 70 (85)
.++++|++.|+.++.+
T Consensus 57 ~d~~~Qt~~~l~ni~~ 72 (140)
T 2b33_A 57 GTIEEKTERVLENLKA 72 (140)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6899999999999854
Done!