RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7641
(85 letters)
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative
decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo
sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A*
1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 78.2 bits (193), Expect = 7e-19
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 20 VNLRLHSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLN 76
+ + ++ G+AF+L+ERQ LG+ GL+PP I+ QD Q ++++ L
Sbjct: 1 IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLE 60
Query: 77 KFTYLSELQ 85
K+ Y+ +Q
Sbjct: 61 KYIYIMGIQ 69
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 77.8 bits (192), Expect = 8e-19
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 25 HSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFTYL 81
+ +LR G+AF+L ERQQL IHGL+PP QD Q+ ++ R DL+++ L
Sbjct: 4 YEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILL 63
Query: 82 SELQ 85
LQ
Sbjct: 64 MSLQ 67
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 75.9 bits (187), Expect = 4e-18
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 20 VNLRLHSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLN 76
R +L++ G+ FSL ERQ LG+HGL+PP Q+QQ +R DL
Sbjct: 35 PKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLA 94
Query: 77 KFTYLSELQ 85
++ L LQ
Sbjct: 95 RYIQLDGLQ 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.015
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 11 DEQGFPSSQVN-LRLHSILRQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVR 69
D Q F V+ L+ + LRQ++ LR + + I G + + K ++VC
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQAL---LELRPAKNVLIDG-VLGSGK-TWVALDVCLSYKV 176
Query: 70 RFQEDLNKFTYLS 82
+ + D F +L+
Sbjct: 177 QCKMDFKIF-WLN 188
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 28.3 bits (63), Expect = 0.23
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 8/37 (21%)
Query: 30 QSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRE 66
G L G++P N D ++ +
Sbjct: 1393 MMNGALQILN-------SGIIPGNR-NADNVDKILEQ 1421
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 25.4 bits (56), Expect = 2.1
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 63 VCRESVRRFQEDLNKF 78
VC SVR+F + K
Sbjct: 58 VCATSVRKFNQQAAKL 73
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus
radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Length = 351
Score = 25.6 bits (57), Expect = 2.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 55 KNQDQQIEVCRESVRRF 71
+Q +E RE VRRF
Sbjct: 170 DDQLPMLEQTREIVRRF 186
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint
center for struc genomics, JCSG, protein structure
initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga
maritima}
Length = 340
Score = 25.2 bits (56), Expect = 2.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 55 KNQDQQIEVCRESVRRF 71
++Q IE+ RE RRF
Sbjct: 161 EDQVYHIELTREIARRF 177
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 24.9 bits (55), Expect = 3.1
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 63 VCRESVRRFQEDLNKF 78
+C RRF E+L
Sbjct: 57 ICSTQTRRFNEELAGL 72
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 25.0 bits (54), Expect = 3.3
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 14 GFPSSQVNLRLHSILRQSMGLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRF 71
F S Q+ + S L ++ I + +QD VCR+ +
Sbjct: 225 HFASIQIA----TAFPSSFPNVLGLPDKTPCLIPCAI-----DQDPYFRVCRDVADKL 273
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase,
translation, structural GEN NPPSFA; 2.50A {Thermus
thermophilus}
Length = 337
Score = 24.8 bits (55), Expect = 3.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 57 QDQQIEVCRESVRRF 71
Q Q IE+ RE RRF
Sbjct: 151 QVQHIELTREIARRF 165
>1k1f_A Breakpoint cluster region protein; oligomerization, coiled coil,
BCR-ABL kinase, transferase; 2.20A {Homo sapiens} SCOP:
a.147.1.1
Length = 72
Score = 23.9 bits (51), Expect = 3.9
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 53 TIKNQDQQIEVCRESVRRFQEDLNK 77
++ + +Q++E + S+RR ++++N+
Sbjct: 27 SVGDIEQELERAKASIRRLEQEVNQ 51
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 24.6 bits (54), Expect = 5.0
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 63 VCRESVRRFQEDLNKF 78
VC ++F E +
Sbjct: 62 VCETETKKFNEIMAGM 77
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 24.1 bits (53), Expect = 5.2
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 63 VCRESVRRFQEDLNKF 78
VC RRF E+ K
Sbjct: 59 VCDAQTRRFNEEAAKL 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0632 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,235,891
Number of extensions: 57610
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 23
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)