RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7641
         (85 letters)



>d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic
          enzyme {Human (Homo sapiens) [TaxId: 9606]}
          Length = 259

 Score = 74.0 bits (182), Expect = 2e-18
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 20 VNLRLHSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLN 76
          +  +   ++       G+AF+L+ERQ LG+ GL+PP I+ QD Q      ++++    L 
Sbjct: 1  IKEKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLE 60

Query: 77 KFTYLSELQ 85
          K+ Y+  +Q
Sbjct: 61 KYIYIMGIQ 69


>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic
          enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
          Length = 257

 Score = 73.6 bits (181), Expect = 3e-18
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 23 RLHSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFT 79
          + + +LR      G+AF+L ERQQL IHGL+PP    QD Q+    ++  R   DL+++ 
Sbjct: 2  KGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYI 61

Query: 80 YLSELQ 85
           L  LQ
Sbjct: 62 LLMSLQ 67


>d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic
           enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}
          Length = 294

 Score = 72.9 bits (179), Expect = 9e-18
 Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 23  RLHSILRQSM---GLAFSLRERQQLGIHGLMPPTIKNQDQQIEVCRESVRRFQEDLNKFT 79
           R   +L++     G+ FSL ERQ LG+HGL+PP    Q+QQ       +R    DL ++ 
Sbjct: 37  RSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYI 96

Query: 80  YLSELQ 85
            L  LQ
Sbjct: 97  QLDGLQ 102


>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 67

 Score = 26.0 bits (57), Expect = 0.26
 Identities = 6/25 (24%), Positives = 19/25 (76%)

Query: 53 TIKNQDQQIEVCRESVRRFQEDLNK 77
          ++ + +Q++E  + S+RR ++++N+
Sbjct: 27 SVGDIEQELERAKASIRRLEQEVNQ 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.386 

Gapped
Lambda     K      H
   0.267   0.0692    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 294,945
Number of extensions: 11029
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 8
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)