BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7644
(316 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PLC|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 274
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 1 MSNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLV 60
++ + WM LP + + + L+IPG+HDTM+Y G +
Sbjct: 1 VTTKQWMSALPDTTN---LAALSIPGTHDTMSYN----------------------GDIT 35
Query: 61 KRVVFNWSVTQHSNITEQLNMGVRYLDLR 89
+ + TQ ++ +QL G+RY+D+R
Sbjct: 36 WTLTKPLAQTQTMSLYQQLEAGIRYIDIR 64
>pdb|1AOD|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 289
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 25/89 (28%)
Query: 1 MSNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLV 60
++ + WM LP + + + L+IPG+HDTM+Y G +
Sbjct: 15 VTTKQWMSALPDTTN---LAALSIPGTHDTMSYN----------------------GDIT 49
Query: 61 KRVVFNWSVTQHSNITEQLNMGVRYLDLR 89
+ + TQ ++ +QL G+RY+D+R
Sbjct: 50 WTLTKPLAQTQTMSLYQQLEAGIRYIDIR 78
>pdb|4F2U|A Chain A, Structure Of The N254yH258Y DOUBLE MUTANT OF THE
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus
Length = 310
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 7 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 44
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 45 -----WAKTQDKDYLTQMKSGVRFFDIR 67
>pdb|4F2B|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
pdb|4F2B|B Chain B, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 7 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 44
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 45 -----WAKTQDKDYLTQMKSGVRFFDIR 67
>pdb|4F2T|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 7 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 44
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 45 -----WAKTQDKDYLTQMKSGVRFFDIR 67
>pdb|3V16|A Chain A, An Intramolecular Pi-Cation Latch In
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus Controls Substrate Access To The Active Site
Length = 303
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 7 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 44
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 45 -----WAKTQDKDYLTQMKSGVRFFDIR 67
>pdb|7PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
R163k
Length = 298
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|3V18|A Chain A, Structure Of The Phosphatidylinositol-Specific
Phospholipase C From Staphylococcus Aureus
Length = 304
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 6 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 43
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 44 -----WAKTQDKDYLTQMKSGVRFFDIR 66
>pdb|4PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
D274n
Length = 298
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|2PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
D198e
Length = 298
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|3PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
D274s
Length = 298
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|1GYM|A Chain A, Phosphatidylinositol-Specific Phospholipase C In Complex
With Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C
pdb|1PTG|A Chain A, Phosphatidylinositol-specific Phospholipase C In Complex
With Myo-inositol
Length = 298
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|3V1H|A Chain A, Structure Of The H258y Mutant Of
Phosphatidylinositol-Specific Phospholipase C From
Staphylococcus Aureus
Length = 306
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L H + + IPGSHD+ ++ +K D K V
Sbjct: 5 SPENWMSKLDDGKH---LTEINIPGSHDSGSFTLK-------DPVKSV------------ 42
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLR 89
W+ TQ + Q+ GVR+ D+R
Sbjct: 43 -----WAKTQDKDYLTQMKSGVRFFDIR 65
>pdb|3EA3|A Chain A, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA3|B Chain B, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
Length = 298
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 45/133 (33%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P + P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIP---DNIPLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFFL 125
W +TQ + Q++ G R D+R + D + +H G +L
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR--GRLTDDNTIVLHH----------------GPLYL 87
Query: 126 FCTRHHFYKFSKE 138
+ T H F +K+
Sbjct: 88 YVTLHEFINEAKQ 100
>pdb|3EA1|A Chain A, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA1|B Chain B, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA2|A Chain A, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
pdb|3EA2|B Chain B, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
Length = 298
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 54/133 (40%), Gaps = 45/133 (33%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P ++ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 13 WMQPIPDNI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFFL 125
W +TQ + Q++ G R D+R + D + +H G +L
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR--GRLTDDNTIVLHH----------------GPLYL 87
Query: 126 FCTRHHFYKFSKE 138
+ T H F +K+
Sbjct: 88 YVTLHEFINEAKQ 100
>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis.
pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis
Length = 299
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 45/133 (33%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P ++ P+ ++IPG+HD+ T+ ++ + KQV
Sbjct: 14 WMQPIPDNI---PLARISIPGTHDSGTFKLQ-------NPIKQV---------------- 47
Query: 66 NWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFFL 125
W +TQ + Q++ G R D I + D + +H G +L
Sbjct: 48 -WGMTQEYDFRYQMDHGARIFD--IDGRLTDDNTIVLHH----------------GPLYL 88
Query: 126 FCTRHHFYKFSKE 138
+ T H F +K+
Sbjct: 89 YVTLHEFINEAKQ 101
>pdb|3V9F|A Chain A, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|C Chain C, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
pdb|3V9F|D Chain D, Crystal Structure Of The Extracellular Domain Of The
Putative Hybrid Two Component System Bt3049 From B.
Thetaiotaomicron
Length = 781
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 30/124 (24%)
Query: 175 YQVIVVYRNDI----IFHVDKGKRLWSGSLWPTFWPD----------TTSVSKLIEYCDR 220
+Q+I + +N++ +F+ DK K++W G+ F D TS S+L+E R
Sbjct: 439 FQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVR 498
Query: 221 VLSQR-------GQYFGFVTQCLMTPDTKFVTKNIFSNLFNKCARPCNDVMKN-----WI 268
++Q G + G V + TPD + V K F+ C+ N + ++ W+
Sbjct: 499 SIAQDSEGRFWIGTFGGGV--GIYTPDXQLVRK--FNQYEGFCSNTINQIYRSSKGQXWL 554
Query: 269 AQKE 272
A E
Sbjct: 555 ATGE 558
>pdb|5PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
H32a
Length = 298
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S P+ ++IPG+ D+ T+ ++ + KQV
Sbjct: 13 WMQPIP---DSIPLARISIPGTADSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|1UW9|A Chain A, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|B Chain B, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|E Chain E, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|H Chain H, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|K Chain K, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|O Chain O, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|R Chain R, L290f-a222t Chlamydomonas Rubisco Mutant
pdb|1UW9|V Chain V, L290f-a222t Chlamydomonas Rubisco Mutant
Length = 475
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)
Query: 229 FGFVTQCLMTPDTKFVTKNIFSNLFNKCARPCNDVMKNWIAQKEPGEQGVNVIIADFISM 288
F FVT+ + + T + + N A C ++MK + K E GV +I+ D+++
Sbjct: 218 FLFVTEAIYKAQAE--TGEVKGHYLNATAGTCEEMMKRAVXAK---ELGVPIIMHDYLT- 271
Query: 289 DGFD-------FCNTVISFLHHQRVHH 308
GF +C FLH R H
Sbjct: 272 GGFTANTSLAIYCRDNGLFLHIHRAMH 298
>pdb|6PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant
H32l
Length = 298
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 27/84 (32%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S P+ ++IPG+ D+ T+ ++ + KQV
Sbjct: 13 WMQPIP---DSIPLARISIPGTLDSGTFKLQ-------NPIKQV---------------- 46
Query: 66 NWSVTQHSNITEQLNMGVRYLDLR 89
W +TQ + Q++ G R D+R
Sbjct: 47 -WGMTQEYDFRYQMDHGARIFDIR 69
>pdb|2A73|A Chain A, Human Complement Component C3
pdb|2A74|A Chain A, Human Complement Component C3c
pdb|2A74|D Chain D, Human Complement Component C3c
pdb|2QKI|A Chain A, Human C3c In Complex With The Inhibitor Compstatin
pdb|2QKI|D Chain D, Human C3c In Complex With The Inhibitor Compstatin
Length = 643
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|2ICE|A Chain A, Crig Bound To C3c
pdb|2ICE|D Chain D, Crig Bound To C3c
pdb|2ICF|A Chain A, Crig Bound To C3b
Length = 642
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|2XWB|A Chain A, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|C Chain C, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 642
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|2HR0|A Chain A, Structure Of Complement C3b: Insights Into Complement
Activation And Regulation
pdb|2I07|A Chain A, Human Complement Component C3b
Length = 645
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|3G6J|A Chain A, C3b In Complex With A C3b Specific Fab
pdb|3G6J|C Chain C, C3b In Complex With A C3b Specific Fab
Length = 644
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|2WII|A Chain A, Complement C3b In Complex With Factor H Domains 1-4
pdb|2WIN|A Chain A, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|C Chain C, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|E Chain E, C3 Convertase (C3bbb) Stabilized By Scin
pdb|2WIN|G Chain G, C3 Convertase (C3bbb) Stabilized By Scin
pdb|3L3O|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L3O|D Chain D, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3c
pdb|3L5N|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement Component C3b
pdb|3NMS|A Chain A, Staphylococcal Complement Inhibitor (Scin) In Complex With
Human Complement C3c
pdb|3OHX|A Chain A, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|3OHX|D Chain D, Molecular Basis For Complement Recognition And Inhibition
Determined By Crystallographic Studies Of The
Staphylococcal Complement Inhibitor (Scin) Bound To C3c
And C3b
pdb|2XWJ|A Chain A, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|C Chain C, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|E Chain E, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|G Chain G, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|3T4A|A Chain A, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
pdb|3T4A|D Chain D, Structure Of A Truncated Form Of Staphylococcal Complement
Inhibitor B Bound To Human C3c At 3.4 Angstrom
Resolution
Length = 645
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 158 QPNPVTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLW 201
QP P +++LK HG +V++V + +F ++K +L +W
Sbjct: 552 QPVPGQQMTLKIEGDHGARVVLVAVDKGVFVLNKKNKLTQSKIW 595
>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
Length = 296
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 53/133 (39%), Gaps = 45/133 (33%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P ++ P+ ++IPG+HD+ T+ ++ +K+V
Sbjct: 13 WMQPIPDNI---PLARISIPGTHDSGTFKLQNP---------------------IKQVA- 47
Query: 66 NWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFFL 125
+TQ + Q++ G R D+R + D + +H G +L
Sbjct: 48 --GMTQEYDFRYQMDHGARIFDIR--GRLTDDNTIVLHH----------------GPLYL 87
Query: 126 FCTRHHFYKFSKE 138
+ T H F +K+
Sbjct: 88 YVTLHEFINEAKQ 100
>pdb|2XVO|A Chain A, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|B Chain B, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|C Chain C, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
pdb|2XVO|D Chain D, Sso1725, A Protein Involved In The CrisprCAS PATHWAY
Length = 192
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 42 APDASKQVRFLDKVFGPLVKRVVFNWSVTQHSNITE 77
+P S+QV + VF P++K V + + V + NITE
Sbjct: 5 SPGGSQQVEW---VFIPVIKDVTYEFKVDNNDNITE 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,075,986
Number of Sequences: 62578
Number of extensions: 399904
Number of successful extensions: 1120
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 32
length of query: 316
length of database: 14,973,337
effective HSP length: 99
effective length of query: 217
effective length of database: 8,778,115
effective search space: 1904850955
effective search space used: 1904850955
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)