RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7644
(316 letters)
>2plc_A PI-PLC, phosphatidylinositol-specific phospholipase C; hydrolase,
phospholipid degradation, virulence factor of human
pathogen; 2.00A {Listeria monocytogenes} SCOP: c.1.18.2
PDB: 1aod_A*
Length = 274
Score = 103 bits (258), Expect = 4e-26
Identities = 46/314 (14%), Positives = 99/314 (31%), Gaps = 57/314 (18%)
Query: 1 MSNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLV 60
++ + WM LP + + L+IPG+HDTM+Y + +
Sbjct: 1 VTTKQWMSALPDTT---NLAALSIPGTHDTMSYNGDITWTLTK----------------- 40
Query: 61 KRVVFNWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAW 120
+ TQ ++ +QL G+RY+D+R + H S +
Sbjct: 41 -----PLAQTQTMSLYQQLEAGIRYIDIRA-----KDNLNIYHGPIFLNASLSGVLETIT 90
Query: 121 GLFFLFCT-------RHHFYKFSKEAHVQMIQIIADVFGSKLCVQPNPVTRVSLKWMWSH 173
FL R + S ++ IQ + +++ P T + +
Sbjct: 91 Q--FLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKDV 148
Query: 174 GYQVIVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEYCDRVLSQRGQYFGFVT 233
+++++ N P+ I+ S + ++ V
Sbjct: 149 RGKILLLSENH---TKKPLVINSRKFGMQFGAPNQV-----IQDDYNGPSVKTKFKEIVQ 200
Query: 234 QCLM---TPDTKFVTKNIFSNLF---NKCARPCNDVMKNWIAQK-EPGEQGVNVIIADFI 286
+ F+ ++L + A N+ ++ ++ +G+ ++I DF
Sbjct: 201 TAYQASKADNKLFLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFP 260
Query: 287 SMDGFDFCNTVISF 300
+I
Sbjct: 261 ---EKQTIKNIIKN 271
>3ea1_A 1-phosphatidylinositol phosphodiesterase;
phosphatidylinositol-specific phospholipase C, PI-PLC,
dimer, interfacially impaired; 1.75A {Bacillus
thuringiensis} PDB: 3ea2_A* 3ea3_A 1t6m_A 2or2_A 1gym_A*
1ptd_A 1ptg_A* 7ptd_A 2ptd_A 4ptd_A 3ptd_A 6ptd_A 5ptd_A
Length = 298
Score = 98.7 bits (245), Expect = 4e-24
Identities = 49/318 (15%), Positives = 101/318 (31%), Gaps = 60/318 (18%)
Query: 3 NEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKR 62
WM+ +P ++ P+ ++IPG+HD+ T+ ++
Sbjct: 10 WSKWMQPIPDNI---PLARISIPGTHDSGTFKLQNP------------------------ 42
Query: 63 VVFNWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGL 122
+ W +TQ + Q++ G R D+R D++ H + IN+A
Sbjct: 43 IKQVWGMTQEYDFRYQMDHGARIFDIRGR-LTDDNTIVLHHGPLYLYVTLHEFINEAKQF 101
Query: 123 F------FLFCTRHHFYKFSKEAHVQMIQIIADVFGSKLCVQPNPVTRVSLKWMWSHGYQ 176
+ + Y+ K A + + L +
Sbjct: 102 LKDNPSETIIMSLKKEYEDMKGAEGSFSSTFEKNYFVDPIFLKTE-GNIKLGDARG---K 157
Query: 177 VIVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLI------EYCDRVLSQRGQYFG 230
++++ R + ++ WP TT+V++ + +Y +
Sbjct: 158 IVLLKR----YSGSNESGGYNNFYWPDNETFTTTVNQNVNVTVQDKYKVNYDEKVKSIKD 213
Query: 231 FVTQCLMTPDTK------FVTKNIFSNLFN---KCARPCNDVMKNWIAQKEPGEQGVNVI 281
+ + + + F + + +N A N + N I QK P V +
Sbjct: 214 TMDETMNNSEDLNHLYINFTSLSSGGTAWNSPYSYASSINPEIANDIKQKNPT--RVGWV 271
Query: 282 IADFISMD-GFDFCNTVI 298
I D+I+ VI
Sbjct: 272 IQDYINEKWSPLLYQEVI 289
>3v1h_A 1-phosphatidylinositol phosphodiesterase; PI-cation, TIM barrel,
phospholipase, lyase; HET: INS; 1.90A {Staphylococcus
aureus subsp} PDB: 3v18_A 3v16_A*
Length = 306
Score = 97.1 bits (241), Expect = 2e-23
Identities = 51/337 (15%), Positives = 92/337 (27%), Gaps = 64/337 (18%)
Query: 2 SNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVK 61
S E+WM L + + IPGSHD+ ++ +K
Sbjct: 5 SPENWMSKLD---DGKHLTEINIPGSHDSGSFTLKDPVK--------------------- 40
Query: 62 RVVFNWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWG 121
W+ TQ + Q+ GVR+ D+R + H M ++ A
Sbjct: 41 ---SVWAKTQDKDYLTQMKSGVRFFDIRGRASADN-MISVHHGMVYLHHELGKFLDDAKY 96
Query: 122 LF------FLFCTRHHFYKFSKEAHVQMIQIIADVFGSKLCVQPNPVTRVSLKWMWSHGY 175
+ + Y + +I + + + Q T
Sbjct: 97 YLSAYPNETIVMSMKKDYDSDSKVTKTFEEIFREYYYNNPQYQNLFYTG---SNANPTLK 153
Query: 176 QV---IVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEYCDRVLSQRGQYFG-- 230
+ IV++ K + W D + I L + +Y
Sbjct: 154 ETKGKIVLFNR---MGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYY 210
Query: 231 -----FVTQCLMTPDTK---------FVTKNIFSNLF---NKCARPCNDVMKNWIAQKEP 273
V L T F++ + F A N + I K
Sbjct: 211 DKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYNYASYINPEIAKTI--KAN 268
Query: 274 GEQGVNVIIADFISMDGFDFCNTVISFLHHQRVHHLH 310
G+ +I D+ + + V + ++ H H
Sbjct: 269 GKARTGWLIVDYAGYTWPGYDDIVSEIIDSNKLEHHH 305
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC,
Ca2+-dependent, catalytic TIM barrel, disulfide-LINK
loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB:
3h4w_A
Length = 339
Score = 31.4 bits (70), Expect = 0.41
Identities = 8/58 (13%), Positives = 18/58 (31%)
Query: 67 WSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFF 124
+ ++ + L+ G L+L + + S+ H+ A L
Sbjct: 40 YEKEKYRYFADALDSGAALLELDLWSNALGRSWRVSHSNPLGNNSNCEGAANASELRT 97
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 29.8 bits (66), Expect = 1.2
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 124 FLFCTRHHFYKFSKEAHVQMIQIIADVFGSKLCV-QPNPVTRVS-LKWMWSHG 174
++C + YK I+ V S L + + V + ++ + G
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMG 576
>2xvo_A SSO1725; structural genomics; 2.08A {Sulfolobus solfataricus}
Length = 192
Score = 28.2 bits (62), Expect = 2.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 42 APDASKQVRFLDKVFGPLVKRVVFNWSVTQHSNITE 77
+P S+QV + VF P++K V + + V + NITE
Sbjct: 5 SPGGSQQVEW---VFIPVIKDVTYEFKVDNNDNITE 37
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP
kinase, aspartokinase fold, pyrimidine nucleotide
synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus
solfataricus} PDB: 2j4k_A* 2j4l_A*
Length = 226
Score = 28.1 bits (63), Expect = 3.5
Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 172 SHGYQVIVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEY-CDRVL 222
Y + + I GK + +G P + ++
Sbjct: 85 DLAYMHVPQSLEEFIQDWSHGKVVVTGGFQPGQSTAAVAALVAEASSSKTLV 136
>3p01_A Two-component response regulator; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
signali protein; 2.65A {Nostoc SP}
Length = 184
Score = 27.6 bits (62), Expect = 4.3
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 117 NQAWGLFFLFCTRHHFYKFSKEAHVQMIQIIAD 149
N+ G+ L + +E + +I + A
Sbjct: 142 NEMLGVLSLQWQQPISL---REDELTLIHLSAQ 171
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase
bifunctional periplasmic...; APC63187.2; HET: EPE TAM;
2.43A {Klebsiella pneumoniae subsp}
Length = 339
Score = 27.0 bits (60), Expect = 7.7
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 228 YFGFVTQCLMTPDTKFVTKNI-FSNLFNKCARPCNDVMKNWIAQKEPGEQGVNVIIA 283
Y GFV +MT D + + +++ + AR M+ +G +V++
Sbjct: 161 YIGFVPPQIMTWDKANLNGKVTVNDIT-ETARKYIPEMR---------AKGADVVVV 207
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 26.8 bits (60), Expect = 9.4
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 145 QIIADVFGSKLCVQPNP 161
++IAD L V+P+
Sbjct: 420 RMIADNLNVSLLVKPDA 436
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.453
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,061,575
Number of extensions: 290052
Number of successful extensions: 985
Number of sequences better than 10.0: 1
Number of HSP's gapped: 974
Number of HSP's successfully gapped: 15
Length of query: 316
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 222
Effective length of database: 4,077,219
Effective search space: 905142618
Effective search space used: 905142618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)