RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7644
(316 letters)
>d2plca_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Listeria monocytogenes [TaxId: 1639]}
Length = 274
Score = 104 bits (259), Expect = 1e-26
Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 59/313 (18%)
Query: 1 MSNEHWMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLV 60
++ + WM LP + + L+IPG+HDTM+Y + +
Sbjct: 1 VTTKQWMSALPDTT---NLAALSIPGTHDTMSYNGDITWTLTK----------------- 40
Query: 61 KRVVFNWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAW 120
+ TQ ++ +QL G+RY+D+R + H S +
Sbjct: 41 -----PLAQTQTMSLYQQLEAGIRYIDIRAK-----DNLNIYHGPIFLNASLSGVLETIT 90
Query: 121 GLFFLFCTR--------HHFYKFSKEAHVQMIQIIADVFGSKLCVQPNPVTRVSLKWMWS 172
FL S ++ IQ + +++ P T + +
Sbjct: 91 Q--FLKKNPKETIIMRLKDEQN-SNDSFDYRIQPLINIYKDYFYTTPRTDTSNKIPTLKD 147
Query: 173 HGYQVIVVYRNDIIFHVDKGKRLWSGSLWPTFWP------DTTSVSKLIEYCDRVLSQRG 226
+++++ N G + + SV + + Q
Sbjct: 148 VRGKILLLSENH-TKKPLVINSRKFGMQFGAPNQVIQDDYNGPSVKTKFKEIVQTAYQAS 206
Query: 227 QYFGFVTQCLMTPDTKFVTKNIFSNLFNKCARPCNDVMKNWIAQKEPGEQ-GVNVIIADF 285
+ + ++ + + A N+ ++ ++ + G+ ++I DF
Sbjct: 207 KADNKLFLN-------HISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDF 259
Query: 286 ISMDGFDFCNTVI 298
+I
Sbjct: 260 P---EKQTIKNII 269
>d2ptda_ c.1.18.2 (A:) Phosphatidylinositol-specific phospholipase C
{Bacillus cereus [TaxId: 1396]}
Length = 296
Score = 104 bits (260), Expect = 1e-26
Identities = 47/312 (15%), Positives = 94/312 (30%), Gaps = 54/312 (17%)
Query: 6 WMRDLPVSLHSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFGPLVKRVVF 65
WM+ +P S+ P+ ++IPG+HD+ T+ ++ +
Sbjct: 13 WMQPIPDSI---PLARISIPGTHDSGTFKLQNP------------------------IKQ 45
Query: 66 NWSVTQHSNITEQLNMGVRYLDLRISTKPGDSSFYFVHAMFADKIFGSSDINQAWGLFFL 125
W +TQ + Q++ G R D+R + + H + IN+A FL
Sbjct: 46 VWGMTQEYDFRYQMDHGARIFDIRGRLTDDN-TIVLHHGPLYLYVTLHEFINEAKQ--FL 102
Query: 126 FCTR--------HHFYKFSKEAHVQMIQIIADVFGSKLCVQPNPVTRVSLKWMWSHGYQV 177
Y+ K A + + L +
Sbjct: 103 KDNPSETIIMSLKKEYEDMKGAEDSFSSTFEKKYFVDPIFLKTE-GNIKLGDARGKIVLL 161
Query: 178 IVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEYCDRVLSQRGQYF-GFVTQCL 236
++ + W + T + + + E ++ + + + +
Sbjct: 162 KRYSGSNEPGGYNNF--YWPDNETFTTTVNQNANVTVQEKYKVSYDEKVKSIKDTMDETM 219
Query: 237 MTPDTK------FVTKNIFSNLFN---KCARPCNDVMKNWIAQKEPGEQGVNVIIADFIS 287
+ F + + +N A N + N+I QK P V +I D+I+
Sbjct: 220 NNSEDLNHLYINFTSLSSGGTAWNSPYYYASYINPEIANYIKQKNPA--RVGWVIQDYIN 277
Query: 288 MD-GFDFCNTVI 298
VI
Sbjct: 278 EKWSPLLYQEVI 289
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated
serine/threonine-protein kinase 3, MAST3 (KIAA0561)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.7 bits (62), Expect = 0.58
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 275 EQGVNVIIADFISMDGFDFCNTVISFLHHQRVHHLHSFLGTS 316
E + + + + V+ F+HHQ V L S
Sbjct: 8 EGRLQEFLTAYAPGARLALADGVLGFIHHQIVELARDCLAKS 49
>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse
(Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Length = 68
Score = 25.0 bits (55), Expect = 3.7
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 107 ADKIFGSSDINQAWGLFFLFCTRHHFYKF----SKEAHVQMIQIIADVFGSKLCVQPNP 161
++I G++D + G + + +KEA+V+ Q++ + +L P
Sbjct: 12 PERIIGATDSS---GELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYP 67
>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus
[TaxId: 274]}
Length = 426
Score = 26.7 bits (58), Expect = 4.4
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 249 FSNLFNKCARPCNDVMKNWIAQKEPGEQGVNVIIADFISMDGFDFCNTVISFLHHQRVHH 308
F+ AR D + + EP + + + + H H
Sbjct: 138 FAEYAEAVARALADRVPFFATLNEPWCSAFLGHWTGEHAPGLRNLEAALRAAHHLLLGHG 197
Query: 309 L 309
L
Sbjct: 198 L 198
>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium
longum, strain am101-2 [TaxId: 216816]}
Length = 143
Score = 25.3 bits (55), Expect = 6.4
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 15 HSFPIIYLAIPGSHDTMTYAIKKSSGIAPDASKQVRFLDKVFG 57
+ IY+ I D T+ +K +G+ +++FG
Sbjct: 108 VAPNAIYMLITNPVDIATHVAQKLTGLPE---------NQIFG 141
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 25.8 bits (55), Expect = 7.0
Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 4/134 (2%)
Query: 162 VTRVSLKWMWSHGYQVIVVYRNDIIFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEYCDRV 221
VTR +L + G +V V R S + D +++ ++ +
Sbjct: 13 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVI 72
Query: 222 LSQRGQYFGFVTQCLMTPDTKFVTKNIFSN----LFNKCARPCNDVMKNWIAQKEPGEQG 277
+ V + + VT + S L VM G
Sbjct: 73 SLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGYSAMAKLVG 132
Query: 278 VNVIIADFISMDGF 291
V +A +DG
Sbjct: 133 VPCAVAVKFVLDGT 146
>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase
{Pseudomonas fragi [TaxId: 296]}
Length = 260
Score = 25.9 bits (56), Expect = 7.1
Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 2/126 (1%)
Query: 172 SHGYQVIVVYRNDI--IFHVDKGKRLWSGSLWPTFWPDTTSVSKLIEYCDRVLSQRGQYF 229
+ G +++ D I V G G D + + D + Q G+
Sbjct: 26 AQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMGRID 85
Query: 230 GFVTQCLMTPDTKFVTKNIFSNLFNKCARPCNDVMKNWIAQKEPGEQGVNVIIADFISMD 289
V + A +QG II +
Sbjct: 86 ILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHG 145
Query: 290 GFDFCN 295
N
Sbjct: 146 LVASAN 151
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.138 0.453
Gapped
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,271,445
Number of extensions: 58356
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 18
Length of query: 316
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 231
Effective length of database: 1,240,546
Effective search space: 286566126
Effective search space used: 286566126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.8 bits)