Query psy7645
Match_columns 418
No_of_seqs 305 out of 2194
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:42:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 4.2E-91 9.1E-96 645.7 42.7 400 1-402 246-648 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 1.5E-78 3.3E-83 633.7 51.5 418 1-418 215-653 (653)
3 KOG0101|consensus 100.0 2.2E-74 4.7E-79 573.5 36.0 398 1-398 218-615 (620)
4 PRK13411 molecular chaperone D 100.0 8.5E-70 1.8E-74 567.2 50.1 395 1-401 207-605 (653)
5 PLN03184 chloroplast Hsp70; Pr 100.0 8.2E-69 1.8E-73 560.3 50.8 393 2-403 246-642 (673)
6 PTZ00186 heat shock 70 kDa pre 100.0 9E-69 2E-73 555.9 49.5 397 1-406 233-633 (657)
7 PRK13410 molecular chaperone D 100.0 2.4E-68 5.1E-73 555.1 48.0 391 1-397 208-607 (668)
8 PRK00290 dnaK molecular chaper 100.0 1E-67 2.2E-72 551.9 52.1 390 1-399 206-599 (627)
9 PTZ00400 DnaK-type molecular c 100.0 1.6E-67 3.4E-72 550.5 48.0 388 1-397 247-638 (663)
10 CHL00094 dnaK heat shock prote 100.0 8.4E-67 1.8E-71 543.5 50.6 388 1-397 208-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.8E-66 4E-71 540.6 49.5 387 1-396 204-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 2.5E-64 5.4E-69 521.9 51.0 384 1-397 202-585 (599)
13 PRK05183 hscA chaperone protei 100.0 2E-63 4.4E-68 516.1 47.6 381 1-398 222-602 (616)
14 KOG0102|consensus 100.0 9.5E-64 2E-68 479.0 29.9 397 2-404 234-634 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 1.5E-60 3.3E-65 499.6 47.0 390 1-397 209-602 (602)
16 PRK01433 hscA chaperone protei 100.0 8E-60 1.7E-64 485.3 47.6 368 2-397 215-587 (595)
17 KOG0103|consensus 100.0 2.4E-58 5.3E-63 454.1 34.8 388 2-398 218-647 (727)
18 COG0443 DnaK Molecular chapero 100.0 1.9E-57 4.2E-62 465.1 39.0 385 2-397 194-578 (579)
19 KOG0104|consensus 100.0 1.1E-49 2.5E-54 393.7 30.6 388 2-399 247-739 (902)
20 PRK11678 putative chaperone; P 99.9 1.3E-23 2.8E-28 210.0 18.7 158 3-167 239-448 (450)
21 PRK13928 rod shape-determining 99.8 6E-18 1.3E-22 164.8 16.2 145 9-167 171-324 (336)
22 PRK13927 rod shape-determining 99.7 4.2E-16 9.1E-21 151.8 16.6 144 9-166 172-324 (334)
23 PRK13929 rod-share determining 99.7 1.6E-15 3.5E-20 147.4 14.6 142 9-164 174-324 (335)
24 TIGR00904 mreB cell shape dete 99.6 5.4E-15 1.2E-19 143.9 15.2 144 9-166 174-327 (333)
25 PRK13930 rod shape-determining 99.6 6.9E-15 1.5E-19 143.3 14.3 143 10-166 177-328 (335)
26 PRK15080 ethanolamine utilizat 99.4 4.2E-12 9.2E-17 119.3 12.8 107 11-164 161-267 (267)
27 TIGR02529 EutJ ethanolamine ut 99.3 3.7E-12 8E-17 117.7 9.6 105 11-162 134-238 (239)
28 TIGR01174 ftsA cell division p 99.3 1.4E-11 3E-16 121.8 11.2 130 11-163 222-371 (371)
29 PF06723 MreB_Mbl: MreB/Mbl pr 99.2 1.5E-10 3.2E-15 110.8 10.9 136 13-164 173-319 (326)
30 PRK09472 ftsA cell division pr 99.1 1.6E-09 3.5E-14 108.6 13.3 131 13-165 232-387 (420)
31 COG1077 MreB Actin-like ATPase 98.7 2.1E-07 4.5E-12 86.7 10.9 142 13-168 181-333 (342)
32 COG0849 ftsA Cell division ATP 98.1 3.4E-05 7.3E-10 76.3 11.6 135 11-167 229-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 97.4 0.00019 4.1E-09 71.0 5.7 143 11-166 171-347 (371)
34 PF11104 PilM_2: Type IV pilus 97.4 0.00087 1.9E-08 65.5 9.9 73 91-164 246-339 (340)
35 PRK13917 plasmid segregation p 97.3 0.00079 1.7E-08 65.8 7.6 76 86-169 264-339 (344)
36 PF02782 FGGY_C: FGGY family o 97.1 0.0011 2.3E-08 59.4 6.1 47 118-166 150-196 (198)
37 TIGR03192 benz_CoA_bzdQ benzoy 97.0 0.0029 6.4E-08 59.5 8.1 47 119-166 241-288 (293)
38 TIGR00241 CoA_E_activ CoA-subs 96.9 0.0034 7.3E-08 58.5 7.5 67 90-162 180-247 (248)
39 PF00022 Actin: Actin; InterP 96.8 0.003 6.4E-08 62.9 7.4 68 99-166 290-367 (393)
40 TIGR02261 benz_CoA_red_D benzo 96.7 0.0054 1.2E-07 57.0 7.7 46 119-164 213-262 (262)
41 PTZ00280 Actin-related protein 96.6 0.0092 2E-07 60.0 8.9 120 13-142 190-337 (414)
42 PRK15027 xylulokinase; Provisi 96.6 0.0098 2.1E-07 61.0 9.2 82 83-169 355-437 (484)
43 PLN02669 xylulokinase 96.5 0.0083 1.8E-07 62.5 8.4 71 93-166 422-492 (556)
44 smart00268 ACTIN Actin. ACTIN 96.5 0.0024 5.3E-08 63.1 4.3 68 99-166 271-347 (373)
45 TIGR03286 methan_mark_15 putat 96.5 0.0078 1.7E-07 59.0 7.2 46 119-165 357-402 (404)
46 TIGR02259 benz_CoA_red_A benzo 96.4 0.0094 2E-07 58.0 7.3 46 119-164 383-432 (432)
47 TIGR01315 5C_CHO_kinase FGGY-f 96.3 0.013 2.9E-07 61.0 8.5 82 83-169 409-493 (541)
48 TIGR02628 fuculo_kin_coli L-fu 96.2 0.02 4.3E-07 58.5 8.8 50 118-169 394-443 (465)
49 TIGR01234 L-ribulokinase L-rib 96.0 0.033 7.1E-07 57.9 9.2 81 83-169 404-486 (536)
50 COG1924 Activator of 2-hydroxy 95.9 0.026 5.7E-07 54.3 7.5 72 90-166 318-390 (396)
51 PRK00047 glpK glycerol kinase; 95.9 0.022 4.8E-07 58.7 7.4 50 118-169 404-453 (498)
52 TIGR01311 glycerol_kin glycero 95.8 0.021 4.6E-07 58.7 6.9 51 117-169 399-449 (493)
53 TIGR01312 XylB D-xylulose kina 95.8 0.032 7E-07 57.1 8.1 51 117-169 390-440 (481)
54 PRK04123 ribulokinase; Provisi 95.6 0.03 6.5E-07 58.4 7.4 51 117-169 438-489 (548)
55 PRK10331 L-fuculokinase; Provi 95.6 0.052 1.1E-06 55.5 9.0 51 117-169 389-439 (470)
56 PTZ00452 actin; Provisional 95.6 0.029 6.4E-07 55.5 6.9 137 13-165 178-348 (375)
57 PRK13317 pantothenate kinase; 95.6 0.059 1.3E-06 50.9 8.5 49 117-165 222-273 (277)
58 PLN02295 glycerol kinase 95.6 0.054 1.2E-06 56.0 9.0 51 117-169 412-462 (512)
59 KOG2517|consensus 95.5 0.047 1E-06 55.2 7.9 71 94-169 394-464 (516)
60 PTZ00294 glycerol kinase-like 95.5 0.041 8.8E-07 56.8 7.8 50 118-169 407-456 (504)
61 TIGR02627 rhamnulo_kin rhamnul 95.4 0.067 1.4E-06 54.5 8.9 50 117-169 387-436 (454)
62 PTZ00281 actin; Provisional 95.4 0.02 4.3E-07 56.7 4.7 140 12-165 178-349 (376)
63 TIGR01175 pilM type IV pilus a 95.3 0.045 9.8E-07 53.5 6.9 50 93-142 256-307 (348)
64 TIGR01314 gntK_FGGY gluconate 95.2 0.07 1.5E-06 55.1 8.5 51 117-169 401-451 (505)
65 PRK10939 autoinducer-2 (AI-2) 95.2 0.092 2E-06 54.4 9.1 51 117-169 409-459 (520)
66 KOG2531|consensus 95.2 0.074 1.6E-06 52.3 7.6 56 109-166 434-489 (545)
67 PRK10640 rhaB rhamnulokinase; 95.1 0.09 1.9E-06 53.8 8.7 50 117-169 375-424 (471)
68 PTZ00466 actin-like protein; P 95.0 0.063 1.4E-06 53.3 6.8 140 12-165 183-353 (380)
69 TIGR03739 PRTRC_D PRTRC system 94.4 0.1 2.3E-06 50.4 6.8 47 116-164 272-318 (320)
70 COG1069 AraB Ribulose kinase [ 94.3 0.39 8.4E-06 48.6 10.5 62 103-169 420-481 (544)
71 PTZ00004 actin-2; Provisional 94.3 0.053 1.2E-06 53.8 4.5 138 13-165 179-351 (378)
72 COG1070 XylB Sugar (pentulose 94.1 0.27 5.8E-06 50.7 9.4 81 83-168 369-450 (502)
73 COG4820 EutJ Ethanolamine util 91.8 0.35 7.6E-06 42.6 5.2 65 92-162 206-270 (277)
74 PF01869 BcrAD_BadFG: BadF/Bad 91.7 0.72 1.6E-05 43.3 7.9 61 101-164 207-271 (271)
75 KOG0681|consensus 91.7 0.21 4.6E-06 50.2 4.3 49 118-166 559-614 (645)
76 PF06406 StbA: StbA protein; 91.6 0.58 1.3E-05 45.2 7.3 69 87-161 246-316 (318)
77 PF07520 SrfB: Virulence facto 90.1 1.9 4.2E-05 47.1 9.9 85 79-168 730-836 (1002)
78 TIGR03281 methan_mark_12 putat 87.6 4.1 9E-05 38.5 9.0 49 118-169 263-314 (326)
79 COG0554 GlpK Glycerol kinase [ 86.5 2.4 5.3E-05 42.5 7.3 74 91-169 375-452 (499)
80 PF03702 UPF0075: Uncharacteri 85.8 3.1 6.6E-05 40.9 7.6 72 92-166 262-337 (364)
81 PRK09343 prefoldin subunit bet 85.3 10 0.00023 30.9 9.4 56 347-406 64-119 (121)
82 TIGR00555 panK_eukar pantothen 85.2 1.6 3.5E-05 41.1 5.2 47 116-162 229-278 (279)
83 PF02543 CmcH_NodU: Carbamoylt 83.5 6.9 0.00015 38.5 9.1 83 82-169 131-216 (360)
84 PF08841 DDR: Diol dehydratase 81.6 1.6 3.5E-05 40.7 3.5 50 114-163 272-328 (332)
85 PRK00976 hypothetical protein; 81.0 7.3 0.00016 37.5 7.9 50 117-169 263-314 (326)
86 KOG0676|consensus 79.3 4.3 9.4E-05 39.8 5.9 28 114-141 287-314 (372)
87 PRK03011 butyrate kinase; Prov 78.6 3.8 8.3E-05 40.2 5.3 46 117-162 295-343 (358)
88 PF07318 DUF1464: Protein of u 78.3 8.1 0.00017 37.4 7.2 54 116-169 259-318 (343)
89 COG5277 Actin and related prot 78.1 3.3 7.2E-05 41.8 4.8 48 118-165 363-417 (444)
90 PRK09585 anmK anhydro-N-acetyl 76.4 15 0.00034 36.0 8.8 63 100-166 272-338 (365)
91 TIGR00143 hypF [NiFe] hydrogen 76.0 5.6 0.00012 42.8 6.1 49 117-165 658-711 (711)
92 COG4972 PilM Tfp pilus assembl 74.5 11 0.00024 36.1 6.9 66 93-160 261-328 (354)
93 PF02801 Ketoacyl-synt_C: Beta 66.8 8.8 0.00019 31.0 4.0 46 99-144 26-73 (119)
94 PRK09604 UGMP family protein; 66.3 13 0.00029 36.0 5.9 63 102-169 244-311 (332)
95 PF14574 DUF4445: Domain of un 66.1 18 0.00039 36.2 6.8 86 78-164 289-375 (412)
96 TIGR03723 bact_gcp putative gl 65.8 12 0.00025 36.1 5.3 56 102-162 249-309 (314)
97 PLN02377 3-ketoacyl-CoA syntha 63.8 27 0.00059 35.9 7.7 72 91-162 167-241 (502)
98 COG0533 QRI7 Metal-dependent p 59.4 36 0.00077 33.0 7.1 52 85-141 230-285 (342)
99 PF08006 DUF1700: Protein of u 58.4 35 0.00076 29.8 6.6 57 330-393 4-62 (181)
100 COG4457 SrfB Uncharacterized p 57.8 47 0.001 35.1 8.0 52 117-168 778-848 (1014)
101 PF12207 DUF3600: Domain of un 57.1 1.2E+02 0.0025 25.5 10.2 61 345-417 72-139 (162)
102 PRK09605 bifunctional UGMP fam 57.0 30 0.00066 35.9 6.9 52 118-169 246-302 (535)
103 PRK05082 N-acetylmannosamine k 56.6 22 0.00048 33.5 5.4 48 117-164 233-286 (291)
104 KOG0797|consensus 55.8 5.2 0.00011 40.4 0.9 52 118-169 527-592 (618)
105 KOG2708|consensus 55.6 65 0.0014 29.4 7.6 143 4-162 136-300 (336)
106 PLN03173 chalcone synthase; Pr 55.5 55 0.0012 32.6 8.2 48 95-142 101-149 (391)
107 TIGR00744 ROK_glcA_fam ROK fam 54.6 23 0.0005 33.8 5.3 49 117-165 251-309 (318)
108 PRK13310 N-acetyl-D-glucosamin 54.1 29 0.00062 33.0 5.8 48 117-164 245-300 (303)
109 PRK09557 fructokinase; Reviewe 53.7 25 0.00054 33.4 5.3 48 117-164 244-299 (301)
110 PLN03170 chalcone synthase; Pr 52.8 58 0.0013 32.6 7.8 49 95-143 105-154 (401)
111 PLN03172 chalcone synthase fam 51.8 52 0.0011 32.8 7.3 49 94-142 100-149 (393)
112 cd00327 cond_enzymes Condensin 50.5 66 0.0014 29.3 7.4 44 100-143 11-56 (254)
113 PTZ00009 heat shock 70 kDa pro 50.3 67 0.0015 34.4 8.3 64 350-413 539-626 (653)
114 PTZ00340 O-sialoglycoprotein e 49.8 42 0.0009 32.8 6.0 39 99-142 250-288 (345)
115 PLN03168 chalcone synthase; Pr 49.4 71 0.0015 31.8 7.8 54 89-142 94-148 (389)
116 PLN02854 3-ketoacyl-CoA syntha 48.7 51 0.0011 34.1 6.8 43 100-142 192-235 (521)
117 PRK07515 3-oxoacyl-(acyl carri 48.3 19 0.00041 35.5 3.6 38 94-131 267-304 (372)
118 KOG0103|consensus 47.3 67 0.0015 34.0 7.3 62 325-394 653-725 (727)
119 COG0533 QRI7 Metal-dependent p 47.2 43 0.00093 32.5 5.6 46 90-135 44-89 (342)
120 TIGR02707 butyr_kinase butyrat 46.9 27 0.00058 34.2 4.3 45 117-161 293-340 (351)
121 PRK14878 UGMP family protein; 45.9 2.2E+02 0.0049 27.4 10.5 65 92-158 40-110 (323)
122 cd02198 YjgH_like YjgH belongs 45.3 50 0.0011 26.2 5.0 48 95-142 33-82 (111)
123 PF12401 DUF3662: Protein of u 44.3 1.2E+02 0.0026 24.4 7.1 88 20-116 4-94 (116)
124 PF01968 Hydantoinase_A: Hydan 44.1 21 0.00046 33.9 3.1 65 95-162 219-283 (290)
125 TIGR03722 arch_KAE1 universal 43.9 2.3E+02 0.005 27.3 10.3 64 93-158 42-111 (322)
126 PRK14878 UGMP family protein; 43.4 76 0.0016 30.6 6.8 24 118-141 242-265 (323)
127 PLN02192 3-ketoacyl-CoA syntha 43.0 77 0.0017 32.8 7.0 52 90-142 170-223 (511)
128 KOG0680|consensus 43.0 42 0.00091 32.2 4.7 24 118-141 318-341 (400)
129 PRK06840 hypothetical protein; 42.3 74 0.0016 30.7 6.7 45 98-142 55-102 (339)
130 PRK05952 3-oxoacyl-(acyl carri 42.1 44 0.00096 33.1 5.1 45 99-143 255-301 (381)
131 KOG0677|consensus 42.1 51 0.0011 30.6 4.9 144 14-169 180-364 (389)
132 PRK09185 3-oxoacyl-(acyl carri 41.8 45 0.00097 33.2 5.1 45 100-144 262-308 (392)
133 PF05957 DUF883: Bacterial pro 41.5 1.6E+02 0.0034 22.5 8.1 67 300-370 5-73 (94)
134 COG1382 GimC Prefoldin, chaper 40.4 2E+02 0.0043 23.4 11.1 46 350-399 66-111 (119)
135 PRK14691 3-oxoacyl-(acyl carri 38.9 53 0.0011 32.1 5.0 47 97-143 205-253 (342)
136 COG3426 Butyrate kinase [Energ 38.3 50 0.0011 31.1 4.3 49 114-162 293-344 (358)
137 TIGR00067 glut_race glutamate 38.3 73 0.0016 29.5 5.6 41 117-161 172-212 (251)
138 PRK07910 3-oxoacyl-(acyl carri 38.2 60 0.0013 32.6 5.4 44 100-143 288-333 (418)
139 PHA02102 hypothetical protein 38.0 67 0.0014 22.7 3.9 31 372-402 2-32 (72)
140 PRK12879 3-oxoacyl-(acyl carri 37.8 78 0.0017 30.2 6.0 45 95-142 222-266 (325)
141 PHA02557 22 prohead core prote 37.3 3.5E+02 0.0076 25.3 10.0 81 301-393 142-224 (271)
142 PLN02939 transferase, transfer 37.2 2.4E+02 0.0053 31.6 10.0 71 297-367 237-310 (977)
143 TIGR03150 fabF beta-ketoacyl-a 37.1 59 0.0013 32.3 5.2 44 100-143 277-322 (407)
144 PRK12880 3-oxoacyl-(acyl carri 36.9 70 0.0015 31.3 5.5 47 97-143 61-109 (353)
145 TIGR03722 arch_KAE1 universal 36.7 96 0.0021 29.9 6.4 42 118-159 243-289 (322)
146 COG0332 FabH 3-oxoacyl-[acyl-c 36.3 1.3E+02 0.0028 29.2 7.0 46 97-142 53-100 (323)
147 COG2192 Predicted carbamoyl tr 36.2 72 0.0016 32.9 5.5 83 82-169 254-338 (555)
148 PRK09116 3-oxoacyl-(acyl carri 35.8 70 0.0015 32.0 5.4 48 97-144 274-323 (405)
149 COG2433 Uncharacterized conser 35.7 4.2E+02 0.0091 27.9 10.7 80 83-165 36-124 (652)
150 PF08392 FAE1_CUT1_RppA: FAE1/ 35.5 1.9E+02 0.0041 27.5 7.8 43 100-142 87-130 (290)
151 COG2377 Predicted molecular ch 35.4 1.1E+02 0.0023 30.0 6.3 59 109-167 282-344 (371)
152 PRK00865 glutamate racemase; P 35.2 81 0.0018 29.4 5.5 57 101-163 163-219 (261)
153 PRK09604 UGMP family protein; 34.9 1.2E+02 0.0026 29.4 6.8 67 93-161 48-120 (332)
154 COG4296 Uncharacterized protei 34.8 1E+02 0.0022 25.4 5.1 22 361-382 90-112 (156)
155 TIGR03723 bact_gcp putative gl 34.7 1.2E+02 0.0027 29.1 6.7 68 92-161 45-118 (314)
156 cd00825 decarbox_cond_enzymes 34.6 1.6E+02 0.0034 28.1 7.6 26 98-123 13-42 (332)
157 PRK06065 acetyl-CoA acetyltran 34.4 93 0.002 31.0 6.0 43 100-143 33-79 (392)
158 PF03646 FlaG: FlaG protein; 34.3 72 0.0016 25.1 4.3 45 260-312 54-99 (107)
159 TIGR00329 gcp_kae1 metallohydr 34.3 67 0.0014 30.7 4.8 66 91-158 43-114 (305)
160 PLN00415 3-ketoacyl-CoA syntha 33.7 99 0.0021 31.5 6.0 41 102-142 140-181 (466)
161 PF06277 EutA: Ethanolamine ut 33.6 1.3E+02 0.0028 30.7 6.7 66 98-164 63-136 (473)
162 PLN03171 chalcone synthase-lik 33.6 1.3E+02 0.0027 30.1 6.8 50 93-142 105-155 (399)
163 KOG0104|consensus 33.6 4.8E+02 0.01 28.4 10.9 54 346-399 774-839 (902)
164 PRK09698 D-allose kinase; Prov 33.4 1.4E+02 0.0029 28.3 6.8 49 117-165 236-295 (302)
165 PRK12879 3-oxoacyl-(acyl carri 33.3 1.2E+02 0.0025 29.0 6.4 45 98-142 55-101 (325)
166 PTZ00340 O-sialoglycoprotein e 33.3 76 0.0016 31.0 5.0 45 91-135 44-88 (345)
167 PF03630 Fumble: Fumble ; Int 33.2 1.4E+02 0.0031 29.0 6.9 48 116-163 286-339 (341)
168 PF15188 CCDC-167: Coiled-coil 33.0 2.2E+02 0.0048 21.6 7.5 35 344-386 30-64 (85)
169 cd00833 PKS polyketide synthas 32.9 82 0.0018 31.3 5.4 46 98-143 279-326 (421)
170 PLN02404 6,7-dimethyl-8-ribity 32.9 24 0.00053 29.6 1.4 75 77-164 5-79 (141)
171 COG4709 Predicted membrane pro 32.4 1.8E+02 0.0039 25.7 6.5 46 346-394 16-63 (195)
172 PRK09258 3-oxoacyl-(acyl carri 31.9 1.4E+02 0.0031 28.7 6.8 46 98-143 63-110 (338)
173 PF00814 Peptidase_M22: Glycop 31.9 50 0.0011 30.9 3.5 67 94-162 27-99 (268)
174 PRK07204 3-oxoacyl-(acyl carri 31.8 2.5E+02 0.0055 26.8 8.5 45 98-142 54-100 (329)
175 cd06152 YjgF_YER057c_UK114_lik 31.7 1.2E+02 0.0025 24.3 5.1 49 95-143 34-87 (114)
176 PF07736 CM_1: Chorismate muta 31.7 83 0.0018 25.5 4.1 30 95-124 17-46 (118)
177 PRK07204 3-oxoacyl-(acyl carri 31.3 73 0.0016 30.6 4.7 42 98-142 230-271 (329)
178 TIGR03545 conserved hypothetic 31.2 3.8E+02 0.0082 28.1 10.0 100 298-399 162-271 (555)
179 TIGR00004 endoribonuclease L-P 30.9 1.1E+02 0.0023 24.7 4.9 48 96-143 49-97 (124)
180 cd00827 init_cond_enzymes "ini 30.8 1.3E+02 0.0029 28.5 6.4 46 97-142 49-96 (324)
181 PRK07515 3-oxoacyl-(acyl carri 30.7 1.5E+02 0.0033 29.1 6.8 45 99-143 98-144 (372)
182 PLN03169 chalcone synthase fam 30.5 2.1E+02 0.0046 28.4 7.9 47 96-142 106-153 (391)
183 cd06155 eu_AANH_C_1 A group of 30.5 1E+02 0.0022 23.9 4.5 48 95-142 26-74 (101)
184 PLN00078 photosystem I reactio 30.1 2.3E+02 0.0051 22.2 6.1 10 360-369 112-121 (122)
185 cd00830 KAS_III Ketoacyl-acyl 30.0 1.4E+02 0.003 28.3 6.3 46 98-143 52-99 (320)
186 PRK12419 riboflavin synthase s 29.8 34 0.00074 29.3 1.8 72 80-164 11-82 (158)
187 PLN02932 3-ketoacyl-CoA syntha 29.8 1.8E+02 0.004 29.8 7.3 54 89-142 141-195 (478)
188 TIGR00747 fabH 3-oxoacyl-(acyl 29.5 1.7E+02 0.0037 27.8 6.9 46 97-142 52-99 (318)
189 cd06151 YjgF_YER057c_UK114_lik 29.3 1.5E+02 0.0032 24.1 5.4 48 96-143 42-96 (126)
190 COG1334 FlaG Uncharacterized f 28.5 1.8E+02 0.0038 23.7 5.5 41 261-309 67-108 (120)
191 KOG2872|consensus 28.5 1.2E+02 0.0027 28.7 5.2 45 82-128 218-262 (359)
192 CHL00203 fabH 3-oxoacyl-acyl-c 28.3 1.4E+02 0.0031 28.6 6.1 42 98-142 226-267 (326)
193 PF07865 DUF1652: Protein of u 28.2 2.3E+02 0.0049 20.6 5.5 48 261-309 15-64 (69)
194 TIGR03286 methan_mark_15 putat 28.1 1.1E+02 0.0024 30.4 5.2 59 97-164 178-236 (404)
195 PRK09352 3-oxoacyl-(acyl carri 28.0 1.4E+02 0.0031 28.3 6.0 45 95-142 216-260 (319)
196 TIGR00329 gcp_kae1 metallohydr 28.0 67 0.0014 30.7 3.6 36 101-141 247-282 (305)
197 cd00830 KAS_III Ketoacyl-acyl 27.2 1.4E+02 0.0031 28.2 5.9 44 96-142 221-264 (320)
198 PRK08868 flagellar protein Fla 26.5 1.6E+02 0.0035 24.8 5.1 45 260-312 88-133 (144)
199 KOG2196|consensus 26.5 5.1E+02 0.011 23.8 9.4 38 349-390 214-251 (254)
200 PLN02836 3-oxoacyl-[acyl-carri 26.3 96 0.0021 31.3 4.6 44 100-143 301-346 (437)
201 COG0304 FabB 3-oxoacyl-(acyl-c 26.1 1.8E+02 0.0038 29.3 6.3 46 98-143 276-323 (412)
202 TIGR00114 lumazine-synth 6,7-d 25.7 41 0.00089 28.1 1.5 44 95-139 13-56 (138)
203 PTZ00050 3-oxoacyl-acyl carrie 25.6 96 0.0021 31.1 4.5 44 100-143 285-331 (421)
204 cd00828 elong_cond_enzymes "el 25.4 1.1E+02 0.0024 30.4 4.8 46 98-143 274-321 (407)
205 cd02185 AroH Chorismate mutase 25.1 1E+02 0.0022 25.0 3.5 30 95-124 17-46 (117)
206 PRK06158 thiolase; Provisional 24.9 1.9E+02 0.004 28.7 6.3 41 100-142 32-72 (384)
207 COG4020 Uncharacterized protei 24.7 2.9E+02 0.0062 25.8 6.7 66 118-197 110-175 (332)
208 PF00195 Chal_sti_synt_N: Chal 24.6 3.9E+02 0.0085 24.4 7.7 70 96-165 100-172 (226)
209 TIGR03610 RutC pyrimidine util 24.5 1.5E+02 0.0033 24.1 4.7 48 96-143 51-99 (127)
210 COG5185 HEC1 Protein involved 24.5 7.6E+02 0.016 25.2 10.0 42 301-342 282-327 (622)
211 TIGR01796 CM_mono_aroH monofun 24.4 1.1E+02 0.0023 24.8 3.5 30 95-124 17-46 (117)
212 PF06075 DUF936: Plant protein 24.3 3.2E+02 0.0069 28.8 8.0 45 348-392 521-567 (579)
213 PRK06519 3-oxoacyl-(acyl carri 24.3 1.7E+02 0.0037 29.2 5.9 43 99-142 281-325 (398)
214 TIGR00747 fabH 3-oxoacyl-(acyl 24.2 1.8E+02 0.004 27.6 6.0 45 95-142 216-260 (318)
215 PF02970 TBCA: Tubulin binding 24.1 2.4E+02 0.0053 21.5 5.4 31 348-378 57-88 (90)
216 PF11593 Med3: Mediator comple 23.8 87 0.0019 30.5 3.5 19 373-391 23-41 (379)
217 PRK00180 acetate kinase A/prop 23.8 2.5E+02 0.0055 28.1 6.8 36 116-153 322-358 (402)
218 PRK05963 3-oxoacyl-(acyl carri 23.7 1.9E+02 0.0041 27.7 6.0 45 94-141 223-267 (326)
219 cd06150 YjgF_YER057c_UK114_lik 23.5 1.6E+02 0.0034 22.9 4.5 48 95-143 29-78 (105)
220 cd06154 YjgF_YER057c_UK114_lik 23.4 1.7E+02 0.0037 23.4 4.8 46 97-143 46-93 (119)
221 PF14574 DUF4445: Domain of un 23.4 1.2E+02 0.0027 30.4 4.6 47 87-133 53-99 (412)
222 PRK09352 3-oxoacyl-(acyl carri 23.3 2.7E+02 0.0058 26.4 6.9 46 97-142 53-100 (319)
223 PRK06366 acetyl-CoA acetyltran 23.2 2.5E+02 0.0054 27.8 6.8 24 100-123 30-53 (388)
224 cd00832 CLF Chain-length facto 23.0 2E+02 0.0044 28.6 6.1 45 99-143 271-317 (399)
225 TIGR01198 pgl 6-phosphoglucono 23.0 1.7E+02 0.0037 26.7 5.2 45 90-139 6-50 (233)
226 smart00825 PKS_KS Beta-ketoacy 22.9 1.3E+02 0.0029 29.9 4.9 44 100-143 281-326 (424)
227 KOG3133|consensus 22.9 4.3E+02 0.0094 24.6 7.6 40 353-392 163-206 (267)
228 PRK01433 hscA chaperone protei 22.9 7.2E+02 0.016 26.3 10.5 35 360-394 538-576 (595)
229 cd00831 CHS_like Chalcone and 22.7 3E+02 0.0064 26.8 7.2 47 96-142 85-132 (361)
230 PRK09605 bifunctional UGMP fam 22.7 1.4E+02 0.003 31.0 5.2 63 94-158 46-114 (535)
231 cd00751 thiolase Thiolase are 22.7 2.4E+02 0.0052 27.9 6.6 42 100-142 26-70 (386)
232 cd00834 KAS_I_II Beta-ketoacyl 22.7 4.6E+02 0.0099 25.8 8.7 38 82-120 58-95 (406)
233 PRK07738 flagellar protein Fla 22.6 2.2E+02 0.0049 23.0 5.1 44 261-312 64-108 (117)
234 PRK13690 hypothetical protein; 22.5 1.4E+02 0.0029 26.1 4.0 31 95-128 5-35 (184)
235 PRK06816 3-oxoacyl-(acyl carri 22.0 2.7E+02 0.0058 27.4 6.8 44 99-142 66-111 (378)
236 PLN02787 3-oxoacyl-[acyl-carri 22.0 1.4E+02 0.0031 31.1 5.0 45 99-143 406-452 (540)
237 PRK10972 Z-ring-associated pro 21.6 4.2E+02 0.0092 21.1 9.7 71 322-397 27-99 (109)
238 PRK06501 3-oxoacyl-(acyl carri 21.6 1.4E+02 0.003 30.0 4.7 44 99-142 290-335 (425)
239 PRK08452 flagellar protein Fla 21.6 2.4E+02 0.0052 23.1 5.2 43 261-311 71-114 (124)
240 KOG0774|consensus 21.5 6.7E+02 0.014 23.4 8.5 25 344-368 213-241 (334)
241 PF01042 Ribonuc_L-PSP: Endori 21.5 3.1E+02 0.0067 21.8 6.0 48 97-144 45-93 (121)
242 PRK10719 eutA reactivating fac 21.4 3.1E+02 0.0068 28.0 7.0 42 98-139 66-109 (475)
243 PF03978 Borrelia_REV: Borreli 21.1 5.2E+02 0.011 22.0 8.2 33 354-389 51-83 (160)
244 KOG0679|consensus 21.0 80 0.0017 31.1 2.6 48 118-165 342-398 (426)
245 PRK06205 acetyl-CoA acetyltran 20.8 2.7E+02 0.0058 27.8 6.5 43 100-142 30-74 (404)
246 PRK00409 recombination and DNA 20.8 9E+02 0.019 26.6 10.9 16 47-62 92-107 (782)
247 PRK03619 phosphoribosylformylg 20.5 1.1E+02 0.0024 27.6 3.4 44 116-165 40-94 (219)
248 COG4020 Uncharacterized protei 20.4 5.6E+02 0.012 23.9 7.7 51 116-169 267-320 (332)
249 PRK04262 hypothetical protein; 20.3 1.9E+02 0.0042 28.0 5.3 42 100-142 55-99 (347)
250 KOG1794|consensus 20.2 2.2E+02 0.0047 27.2 5.1 81 83-169 231-319 (336)
251 COG0020 UppS Undecaprenyl pyro 20.2 6.9E+02 0.015 23.1 9.0 72 50-131 119-201 (245)
252 cd00327 cond_enzymes Condensin 20.1 1E+02 0.0022 27.9 3.2 36 97-132 144-179 (254)
253 cd00825 decarbox_cond_enzymes 20.0 1.1E+02 0.0024 29.1 3.6 45 97-141 204-250 (332)
No 1
>KOG0100|consensus
Probab=100.00 E-value=4.2e-91 Score=645.69 Aligned_cols=400 Identities=56% Similarity=0.943 Sum_probs=391.1
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCcee
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF 80 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~ 80 (418)
+++|+|+|+.||.||||+|||+++++||.+.++++++.|++.+.+++.+|+++||+||.+||+..++.|.|+++++|.||
T Consensus 246 nGVFeVlaTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~Df 325 (663)
T KOG0100|consen 246 NGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDF 325 (663)
T ss_pred CceEEEEecCCCcccCccchHHHHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 81 YTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 81 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
+-++||..||+|.-++|.+++.+++++|+++++.+.+|+.|+|||||+|||.||++|+++|+++.+++.+|||||||+||
T Consensus 326 SEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGA 405 (663)
T KOG0100|consen 326 SETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGA 405 (663)
T ss_pred cchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCC
Q psy7645 161 AVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDN 240 (418)
Q Consensus 161 a~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~ 240 (418)
|++|..+|+ .....++++.|++|+++||++.+|.|..+|||||.||++++..|+++.|+|+.+.|.+|+|++.++++|
T Consensus 406 AVQaGvlsG--ee~t~divLLDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn 483 (663)
T KOG0100|consen 406 AVQAGVLSG--EEDTGDIVLLDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDN 483 (663)
T ss_pred hhhhccccc--ccCcCcEEEEeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccc
Confidence 999999999 567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q psy7645 241 NLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 320 (418)
Q Consensus 241 ~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r 320 (418)
..||.|.++|+||+|+|.|+|+|+|.+|.||+|+|++.|+.+|++.+++|+|+.++||+|+|++|.+++++|.++|+..+
T Consensus 484 ~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~K 563 (663)
T KOG0100|consen 484 HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLK 563 (663)
T ss_pred cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 321 ERISARNNLEAYVFNVKQALDNA---GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 321 ~~~~arN~LE~~iy~~r~~L~~~---~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
++.++||+||+|.|++++.+.+. ..++++++++.+..++++..+||+.|++|+.++|.+++++|+..++||.++.+.
T Consensus 564 ekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 564 EKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999766 688999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy7645 398 GAGGA 402 (418)
Q Consensus 398 ~~~~~ 402 (418)
.+||+
T Consensus 644 ~ag~~ 648 (663)
T KOG0100|consen 644 GAGGA 648 (663)
T ss_pred hcCCC
Confidence 76443
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=1.5e-78 Score=633.67 Aligned_cols=418 Identities=67% Similarity=1.047 Sum_probs=393.7
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCce
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKY-KKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGID 79 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d 79 (418)
++.|+|+++.||.+|||+|||.+|++|+.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.+
T Consensus 215 ~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d 294 (653)
T PTZ00009 215 DGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGID 294 (653)
T ss_pred CCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCce
Confidence 367999999999999999999999999999998877 4677788999999999999999999999999999999999999
Q ss_pred eEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 80 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 80 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
+.++|||++||++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+|+++|+++|++..+..++|||+|||+|
T Consensus 295 ~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~G 374 (653)
T PTZ00009 295 YNVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYG 374 (653)
T ss_pred EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999767788899999999999
Q ss_pred HHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccC
Q psy7645 160 AAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKD 239 (418)
Q Consensus 160 Aa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~ 239 (418)
||++|+++++...+.++++.+.|++|++||++..++.+.+|||+|++||++++..|+++.|+|+.+.|.||||++..+.+
T Consensus 375 Aa~~aa~ls~~~~~~~~~~~~~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~ 454 (653)
T PTZ00009 375 AAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKD 454 (653)
T ss_pred hhhhHHHhcCCccccccceEEEeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCC
Confidence 99999999985557788999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHH
Q psy7645 240 NNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQ 319 (418)
Q Consensus 240 ~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~ 319 (418)
|..||+|.|.++|+.+.|.++|+++|++|.||+|+|++.+..+++...+++.....+|++++++++++.+.+|..+|+..
T Consensus 455 n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~ 534 (653)
T PTZ00009 455 NNLLGKFHLDGIPPAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEAN 534 (653)
T ss_pred CceEEEEEEcCCCCCCCCCceEEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999988999999999999999999999999998888876667899999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 320 KERISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 320 r~~~~arN~LE~~iy~~r~~L~~~--~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
+++.+++|+||+|||++|++|.+. ..++++++++++.+.++++++|||++.+++.++|++|+++|+++++||..|++.
T Consensus 535 ~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 535 RERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999753 789999999999999999999999888899999999999999999999999998
Q ss_pred CCCCCCCCCC------------------CCCCCCCCCCC
Q psy7645 398 GAGGASAGDM------------------PRGGPTVEEVD 418 (418)
Q Consensus 398 ~~~~~~~~~~------------------~~~~~~~~~~~ 418 (418)
+++||||||| ++.||||||||
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (653)
T PTZ00009 615 AAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGPTVEEVD 653 (653)
T ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCC
Confidence 8888887644 14789999998
No 3
>KOG0101|consensus
Probab=100.00 E-value=2.2e-74 Score=573.49 Aligned_cols=398 Identities=70% Similarity=1.086 Sum_probs=388.2
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCcee
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF 80 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~ 80 (418)
|+.|.|+++.||.+|||+|||+.|++|+..+|+++++.++..+++++++|+.+||++|+.||....+++.+++|++|.|+
T Consensus 218 gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~ 297 (620)
T KOG0101|consen 218 GGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDF 297 (620)
T ss_pred cchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccc
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 81 YTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 81 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
...|||.+|+.+|.+++.++..++..+|+++++++.+|+.|+|||||||+|.++..++++|+++.+..++||||+||+||
T Consensus 298 ~~~itrarfe~l~~dlf~~~~~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GA 377 (620)
T KOG0101|consen 298 YTSITRARFEELNADLFRSTLEPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGA 377 (620)
T ss_pred cceeehhhhhhhhhHHHHHHHHHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCC
Q psy7645 161 AVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDN 240 (418)
Q Consensus 161 a~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~ 240 (418)
|++|+.+++.....+.++.+.|+.|.++||++.++.|.++|++|+++|++++.+|+++.|+|+.+.|.||||++.++++|
T Consensus 378 avqaa~~~g~~~~~~~~l~lid~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn 457 (620)
T KOG0101|consen 378 AVQAAILSGDKSLNIQDLLLIDVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDN 457 (620)
T ss_pred HHHhhhccCCccccccceeeeecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccc
Confidence 99999999977777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q psy7645 241 NLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 320 (418)
Q Consensus 241 ~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r 320 (418)
..+|.|.|.++||.|+|.+.|+++|.+|.||+|.|++.++++|+...++|++..+.||.++|++|...++.+..+|+..+
T Consensus 458 ~~lg~feL~gippaprgvp~IevtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~ 537 (620)
T KOG0101|consen 458 NLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQK 537 (620)
T ss_pred cccceeeecCCCccccCCcceeEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7645 321 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 398 (418)
Q Consensus 321 ~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e~ 398 (418)
++..++|.||+|+|+++..+++....++++++.++.+.++++..||+.+..+.+++|++|.++|+..++||+.+.+.+
T Consensus 538 ~~v~~~~~le~~~f~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 538 DKVAAKNSLESYAFNMKATVEDEKGKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHhhHHHHHHhhhhhhhhhccccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 999999999999999999998777899999999999999999999999998889999999999999999999998864
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.5e-70 Score=567.24 Aligned_cols=395 Identities=46% Similarity=0.745 Sum_probs=371.8
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC----
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---- 76 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~---- 76 (418)
++.|+|++++||.+|||+|||++|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..
T Consensus 207 ~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~ 286 (653)
T PRK13411 207 DGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETG 286 (653)
T ss_pred CCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCC
Confidence 3679999999999999999999999999999999998898889999999999999999999999999999887653
Q ss_pred CceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 77 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
+.++.+.|||++|+++|+|+++++..+|+++|+++++++++|+.|+||||+||||+|++.|+++|++..+..++|||+||
T Consensus 287 ~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaV 366 (653)
T PRK13411 287 PKHLEMELTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAV 366 (653)
T ss_pred CeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999777788899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+|||++..
T Consensus 367 A~GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~ 442 (653)
T PRK13411 367 ALGAAIQAGVLGG----EVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAM 442 (653)
T ss_pred HHHHHHHHHhhcC----CccceeeeecccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcc
Confidence 9999999999987 367899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||.|.+.++|+.+.|.++|+|+|.+|.||+|+|++.+..+|+...+.+.+. .+||+++++++++++.+|..+|
T Consensus 443 ~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D 521 (653)
T PRK13411 443 AKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEED 521 (653)
T ss_pred cccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999888888765 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
+..+++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..+++
T Consensus 522 ~~~~~~~eakN~lEs~iy~~r~~l~~~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 522 RRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975577899999999999999999999984 46899999999999999999999998
Q ss_pred cCCCC
Q psy7645 397 GGAGG 401 (418)
Q Consensus 397 e~~~~ 401 (418)
.+++|
T Consensus 601 ~~~~~ 605 (653)
T PRK13411 601 QQGGS 605 (653)
T ss_pred hhcCC
Confidence 76544
No 5
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=8.2e-69 Score=560.34 Aligned_cols=393 Identities=45% Similarity=0.745 Sum_probs=367.9
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC----C
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD----G 77 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~----~ 77 (418)
+.|+|++++||.+|||+|||++|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+.. +
T Consensus 246 ~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~ 325 (673)
T PLN03184 246 GVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGP 325 (673)
T ss_pred CEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCC
Confidence 579999999999999999999999999999999999888889999999999999999999999999998886642 3
Q ss_pred ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHH
Q psy7645 78 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA 157 (418)
Q Consensus 78 ~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA 157 (418)
.++.++|||++|+++|+|+++++..+|+++|+++++++.+|+.|+||||+||||.|+++|+++|+ ..+..++|||+|||
T Consensus 326 ~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg-~~~~~~~npdeaVA 404 (673)
T PLN03184 326 KHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTG-KDPNVTVNPDEVVA 404 (673)
T ss_pred ceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhC-CCcccccCcchHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999995 56778899999999
Q ss_pred hhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccc
Q psy7645 158 YGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 237 (418)
Q Consensus 158 ~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~ 237 (418)
+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.+|||++..+
T Consensus 405 ~GAAi~aa~ls~----~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~ 480 (673)
T PLN03184 405 LGAAVQAGVLAG----EVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFV 480 (673)
T ss_pred HHHHHHHHHhcc----CccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeeccccc
Confidence 999999999987 4578899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhH
Q psy7645 238 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 317 (418)
Q Consensus 238 ~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~ 317 (418)
.+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..+++...+++... .+||+++++++++++.+|..+|+
T Consensus 481 ~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~ 559 (673)
T PLN03184 481 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDK 559 (673)
T ss_pred ccCceEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999999999989999999999999999999999999988888764 67999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 318 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 318 ~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
..+++.++||+||+|+|.+|+.|.+...++++++++.+.+.++++++||+.+ +.+++++++++|.+.+.++..+++.
T Consensus 560 ~~~~~~eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~ 636 (673)
T PLN03184 560 EKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYN 636 (673)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999964367899999999999999999999976 5789999999999999999999887
Q ss_pred CCCCCC
Q psy7645 398 GAGGAS 403 (418)
Q Consensus 398 ~~~~~~ 403 (418)
++|||.
T Consensus 637 ~~~~~~ 642 (673)
T PLN03184 637 QPGAGG 642 (673)
T ss_pred cCCCCC
Confidence 765553
No 6
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=9e-69 Score=555.93 Aligned_cols=397 Identities=44% Similarity=0.692 Sum_probs=368.5
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC---
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG--- 77 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~--- 77 (418)
++.|+|++++||.+|||+|||++|++|+.++|+.+++.++..+++.+.+|+.+||+||+.||...++.+.++.+..+
T Consensus 233 ~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g 312 (657)
T PTZ00186 233 GGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADG 312 (657)
T ss_pred CCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCC
Confidence 46899999999999999999999999999999999999988889999999999999999999999999998876532
Q ss_pred -ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 78 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 78 -~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
.++.++|||++|+++|+|++++++.+++++|+++++++.+|+.|+|||||||||.|+++|+++|+ ..+..++|||+||
T Consensus 313 ~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaV 391 (657)
T PTZ00186 313 AQHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAV 391 (657)
T ss_pred CcceEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHH
Confidence 45889999999999999999999999999999999999999999999999999999999999995 5567899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|++||++++..|++..|+|+.+.|.||||++..
T Consensus 392 A~GAAi~a~~l~~----~~~~~~l~Dv~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~ 467 (657)
T PTZ00186 392 ALGAATLGGVLRG----DVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREM 467 (657)
T ss_pred HHhHHHHHHHhcc----ccCceEEEeeccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccc
Confidence 9999999999987 357889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..||+...++|.+. ..|+++++++++++++++..+|
T Consensus 468 ~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d 546 (657)
T PTZ00186 468 AADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEAD 546 (657)
T ss_pred cccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999865 5799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
...+++.+++|++|++++.+++.+.+. ..+++++++.+...+..+++||.. .+.+.++|++++++|++.+.++..+++
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 547 RVKRELVEVRNNAETQLTTAERQLGEW-KYVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999643 468999999999999999999984 345679999999999999999999887
Q ss_pred cCCCCCCCCC
Q psy7645 397 GGAGGASAGD 406 (418)
Q Consensus 397 e~~~~~~~~~ 406 (418)
..+ +|++.|
T Consensus 625 ~~~-~~~~~~ 633 (657)
T PTZ00186 625 QQA-AAANSG 633 (657)
T ss_pred hhc-ccCCCC
Confidence 645 444333
No 7
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2.4e-68 Score=555.15 Aligned_cols=391 Identities=43% Similarity=0.698 Sum_probs=368.0
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC---
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG--- 77 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~--- 77 (418)
++.|+|++++||.+|||+|||.+|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+
T Consensus 208 ~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g 287 (668)
T PRK13410 208 NGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDG 287 (668)
T ss_pred CCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCC
Confidence 35799999999999999999999999999999999999988899999999999999999999999999999877543
Q ss_pred -ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 78 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 78 -~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
.++.++|||++|+++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+|+++|+++|+ ..+..++|||+||
T Consensus 288 ~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg-~~~~~~~npdeaV 366 (668)
T PRK13410 288 PKHIETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP-REPNQNVNPDEVV 366 (668)
T ss_pred CeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcC-CCcccCCCCchHH
Confidence 46889999999999999999999999999999999999999999999999999999999999995 6678899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||+++.+|.+.+|||+|++||++++..|++..|+|+.+.|.||||++..
T Consensus 367 A~GAAi~aa~ls~----~~~~~~l~Dv~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~ 442 (668)
T PRK13410 367 AVGAAIQAGILAG----ELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREM 442 (668)
T ss_pred HHhHHHHHHhhcc----cccceeEEeeccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeecccc
Confidence 9999999999987 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..||++..+.|... .+|++++++++++++.+|..+|
T Consensus 443 ~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d 521 (668)
T PRK13410 443 ASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADED 521 (668)
T ss_pred ccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999999999999999999888888765 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh---c-cCCCCHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHH
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDN---A-GNKLTESEKSRCREECDATLKWLDNNT-LADKEEYQDKLQQLQKSCMPL 391 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~---~-~~~~~~~e~~~i~~~l~~~~~WL~~~~-~a~~~e~~~kl~~L~~~~~~i 391 (418)
+..+++.++||++|+|+|.+|++|.+ . ..++++++++.+...++++++||+++. +...+.|.+.++.|+.+..++
T Consensus 522 ~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~ 601 (668)
T PRK13410 522 RRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREV 601 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999975 2 578999999999999999999999765 466778999999999999999
Q ss_pred HHHHhc
Q psy7645 392 MSKMHG 397 (418)
Q Consensus 392 ~~r~~e 397 (418)
..|+.|
T Consensus 602 ~~~~~~ 607 (668)
T PRK13410 602 RAEYKE 607 (668)
T ss_pred HHHHhh
Confidence 999998
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1e-67 Score=551.90 Aligned_cols=390 Identities=50% Similarity=0.786 Sum_probs=367.3
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC---
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG--- 77 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~--- 77 (418)
++.|+|++++||.+|||+|||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.++.+
T Consensus 206 ~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g 285 (627)
T PRK00290 206 DGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASG 285 (627)
T ss_pred CCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCC
Confidence 35799999999999999999999999999999999998988899999999999999999999999999999877642
Q ss_pred -ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 78 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 78 -~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
.++.++|||++|+++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+|++.|++.|+ ..+..++|||+||
T Consensus 286 ~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeav 364 (627)
T PRK00290 286 PKHLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFG-KEPNKGVNPDEVV 364 (627)
T ss_pred CeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhC-CCCCcCcCChHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999994 6678899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||++..++.+.+|||+|+++|++++..|++..|+|+.+.|.+|||++..
T Consensus 365 a~GAa~~aa~l~~----~~~~~~~~d~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~ 440 (627)
T PRK00290 365 AIGAAIQGGVLAG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREM 440 (627)
T ss_pred HHhHHHHHHHhcC----CccceeeeeccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccc
Confidence 9999999999987 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.|.++|+.++|.++|+++|.+|.||+|+|++.+..+|+...+++... .+|++++++++++++.++..+|
T Consensus 441 ~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d 519 (627)
T PRK00290 441 AADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEED 519 (627)
T ss_pred cCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999889999999999999999999999999988888765 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
+..+++.++||+||+|+|.+|+.|.+...++++++++++.+.++++++||+++ +.++|++++++|+++++++..|++
T Consensus 520 ~~~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~ 596 (627)
T PRK00290 520 KKRKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMY 596 (627)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999973367899999999999999999999976 678999999999999999999987
Q ss_pred cCC
Q psy7645 397 GGA 399 (418)
Q Consensus 397 e~~ 399 (418)
+..
T Consensus 597 ~~~ 599 (627)
T PRK00290 597 QQA 599 (627)
T ss_pred hhc
Confidence 643
No 9
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.6e-67 Score=550.45 Aligned_cols=388 Identities=48% Similarity=0.788 Sum_probs=365.3
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC---
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG--- 77 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~--- 77 (418)
++.|+|++++||.+|||+|||++|++|+.++|+++++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..+
T Consensus 247 ~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g 326 (663)
T PTZ00400 247 GGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSG 326 (663)
T ss_pred CCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCC
Confidence 46799999999999999999999999999999999998888899999999999999999999999999988876543
Q ss_pred -ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 78 -IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 78 -~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
.++.++|||++|+++|+|++.++..+|+++|+++++++.+|+.|+||||+||||+|+++|+++|+ ..+..++|||+||
T Consensus 327 ~~~~~~~itR~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaV 405 (663)
T PTZ00400 327 PKHLQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAV 405 (663)
T ss_pred ceEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccce
Confidence 47899999999999999999999999999999999999999999999999999999999999995 5678899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.|.||||++..
T Consensus 406 A~GAAi~aa~l~~----~~~~~~~~dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~ 481 (663)
T PTZ00400 406 AMGAAIQAGVLKG----EIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREM 481 (663)
T ss_pred eeccHHHHHhhcC----CccceEEEeccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCcc
Confidence 9999999999987 357889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+..+|+...++++.. .+|++++++++++++.+|..+|
T Consensus 482 ~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D 560 (663)
T PTZ00400 482 AADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQD 560 (663)
T ss_pred CCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999999999988888765 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
+..+++.++||+||+|+|.+|+.|.+....+++++++.+.+.++++++||+++ +.++|++++++|++.++++..+++
T Consensus 561 ~~~~~~~eakN~lEs~iy~~r~~l~e~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y 637 (663)
T PTZ00400 561 EKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAY 637 (663)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999974467899999999999999999999976 578999999999999999999876
Q ss_pred c
Q psy7645 397 G 397 (418)
Q Consensus 397 e 397 (418)
+
T Consensus 638 ~ 638 (663)
T PTZ00400 638 K 638 (663)
T ss_pred h
Confidence 4
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=8.4e-67 Score=543.48 Aligned_cols=388 Identities=49% Similarity=0.775 Sum_probs=364.7
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC----
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---- 76 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~---- 76 (418)
++.|+|++++||.+|||+|||++|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..
T Consensus 208 ~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g 287 (621)
T CHL00094 208 DGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTG 287 (621)
T ss_pred CCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCC
Confidence 3578999999999999999999999999999999999998889999999999999999999999999999887653
Q ss_pred CceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 77 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
+.++..+|||++||++|+|+++++..+|+++|+++++++.+|+.|+||||+||||.|++.|+++|+ ..+..++|||+||
T Consensus 288 ~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeav 366 (621)
T CHL00094 288 PKHIEKTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVV 366 (621)
T ss_pred CeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHH
Confidence 257889999999999999999999999999999999999999999999999999999999999995 5678899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||++..++.+.+|||+|+++|++++..|++..|+|..+.+.||||++..
T Consensus 367 a~GAA~~aa~ls~----~~~~~~~~d~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~ 442 (621)
T CHL00094 367 AIGAAVQAGVLAG----EVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGEREL 442 (621)
T ss_pred HhhhHHHHHHhcC----CccceeeeeeeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeecccc
Confidence 9999999999987 457889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..+|+...+.+.+. .+|++++++++++++.++..+|
T Consensus 443 ~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d 521 (621)
T CHL00094 443 AKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAED 521 (621)
T ss_pred CCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999989999999999999999999999999888888754 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
+..+++.+++|+||+|+|.+|++|.+...++++++++++.+.++++++||+++ ..++|++++++|++.++++..+.+
T Consensus 522 ~~~~~~~~~kn~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~ 598 (621)
T CHL00094 522 KEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVY 598 (621)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999974367889999999999999999999976 458999999999999999999887
Q ss_pred c
Q psy7645 397 G 397 (418)
Q Consensus 397 e 397 (418)
.
T Consensus 599 ~ 599 (621)
T CHL00094 599 S 599 (621)
T ss_pred h
Confidence 6
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.8e-66 Score=540.63 Aligned_cols=387 Identities=52% Similarity=0.801 Sum_probs=364.4
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccC----
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYD---- 76 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~---- 76 (418)
++.++|++++||.+|||+|||+.|++|+.++|..+++.++..+++.+.+|+.+||++|+.||.+.++.+.++.+..
T Consensus 204 ~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g 283 (595)
T TIGR02350 204 DGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASG 283 (595)
T ss_pred CCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCC
Confidence 3579999999999999999999999999999999999888889999999999999999999999999999887654
Q ss_pred CceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 77 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
+.++.++|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|++.|+++|+ ..+..++|||+||
T Consensus 284 ~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeav 362 (595)
T TIGR02350 284 PKHLEMTLTRAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVV 362 (595)
T ss_pred CeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999996 6778899999999
Q ss_pred HhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCccc
Q psy7645 157 AYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAM 236 (418)
Q Consensus 157 A~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~ 236 (418)
|+|||++|+++++ .++++.+.|++|++||+++.++.+.+|||+|+++|++++..|++..|+|..+.+.+|+|++..
T Consensus 363 a~GAa~~aa~l~~----~~~~~~~~d~~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~ 438 (595)
T TIGR02350 363 AIGAAIQGGVLKG----DVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPM 438 (595)
T ss_pred HHHHHHHHHHhcC----CcccceeeecccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccc
Confidence 9999999999987 367889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhh
Q psy7645 237 TKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED 316 (418)
Q Consensus 237 ~~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D 316 (418)
+.+|..||+|.+.++|+.+.|.++|+++|++|.||+|+|++.+..+|+...+.++.. .+||+++++++++++.++..+|
T Consensus 439 ~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D 517 (595)
T TIGR02350 439 AADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEED 517 (595)
T ss_pred cccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999889999999999999999999999999988888765 6799999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 317 ERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 317 ~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
+..+++.+++|+||+|||.+|+.|++...++++++++++.+.++++++||+++ +..+|++++++|++.++++..+++
T Consensus 518 ~~~~~~~e~kn~lEs~iy~~r~~l~~~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 518 KKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999975567899999999999999999999976 678999999999999999998754
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=2.5e-64 Score=521.91 Aligned_cols=384 Identities=38% Similarity=0.603 Sum_probs=357.5
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCcee
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF 80 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~ 80 (418)
++.|+|++++||.+|||+|||++|++|+.+++ +.++..+++.+.+|+.+||++|+.||.+.++.+.++. +|.++
T Consensus 202 ~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~ 275 (599)
T TIGR01991 202 KGVFEVLATGGDSALGGDDFDHALAKWILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDF 275 (599)
T ss_pred CCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEE
Confidence 35789999999999999999999999999764 4555668899999999999999999999999888864 78899
Q ss_pred EEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 81 YTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 81 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
.++|||++|+++|+|+++++..+|+++|+++++++.+|+.|+||||+||||+|+++|++.|+ ..+..++|||+|||+||
T Consensus 276 ~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GA 354 (599)
T TIGR01991 276 KGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGA 354 (599)
T ss_pred EEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999995 45677899999999999
Q ss_pred HHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCC
Q psy7645 161 AVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDN 240 (418)
Q Consensus 161 a~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~ 240 (418)
|++|+++++ .+..+++.+.|++|++||+++.+|.+.+|||+|++||++++..|++..|+|..+.|.||||++..+.+|
T Consensus 355 ai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n 432 (599)
T TIGR01991 355 AIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDC 432 (599)
T ss_pred HHHHHHhcc--ccccCceEEEEeeeeeeEEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccC
Confidence 999999987 455678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q psy7645 241 NLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 320 (418)
Q Consensus 241 ~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r 320 (418)
..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..+|++..+.|.+. ..|++++++++.+++.++..+|...+
T Consensus 433 ~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~ 511 (599)
T TIGR01991 433 RSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYAR 511 (599)
T ss_pred ceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998888765 56999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 321 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 321 ~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
+..+++|++|+|+|.+++.+.+....+++++++.+...++++++||+++ +.++++++.++|++.+.++..+...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 512 ALAEQKVEAERILEALQAALAADGDLLSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999865556889999999999999999999975 5789999999999999999986654
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2e-63 Score=516.10 Aligned_cols=381 Identities=35% Similarity=0.576 Sum_probs=351.6
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCcee
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDF 80 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~ 80 (418)
++.|+|++++||.+|||+|||++|++|+.++|+ .+...+++.+.+|+.+||+||+.||.+.++.+.+..+
T Consensus 222 ~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------ 291 (616)
T PRK05183 222 KGVFEVLATGGDSALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------ 291 (616)
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------
Confidence 357999999999999999999999999998764 3444678999999999999999999999988888532
Q ss_pred EEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 81 YTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 81 ~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
...|||++|+++|+|+++++..+++++|+++++++.+|+.|+||||+||||+|++.|+++|+ ..+..++|||+|||+||
T Consensus 292 ~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GA 370 (616)
T PRK05183 292 QGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGA 370 (616)
T ss_pred CCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHH
Confidence 22599999999999999999999999999999999999999999999999999999999996 45667899999999999
Q ss_pred HHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCC
Q psy7645 161 AVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDN 240 (418)
Q Consensus 161 a~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~ 240 (418)
|++|+++++ .+..+++.+.|++|++||+++.+|.+.+|||+|+++|++++..|++..|+|+.+.+.||||++..+.+|
T Consensus 371 Ai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n 448 (616)
T PRK05183 371 AIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADC 448 (616)
T ss_pred HHHHHHhcc--ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccc
Confidence 999999987 445678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHH
Q psy7645 241 NLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQK 320 (418)
Q Consensus 241 ~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r 320 (418)
..||+|.|.++|+.+.|.++|+|+|++|.||+|+|++.+..+|+...+.+.+. ..|++++++++++++.++..+|...+
T Consensus 449 ~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~ 527 (616)
T PRK05183 449 RSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQAR 527 (616)
T ss_pred cEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999988765 56999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7645 321 ERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 398 (418)
Q Consensus 321 ~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e~ 398 (418)
++.+++|++|+|+|.+++.+.+....+++++++.+...++++++||+.+ +.++|++++++|++.++++..+.+++
T Consensus 528 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 528 ALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999975556789999999999999999999864 77899999999999999999866553
No 14
>KOG0102|consensus
Probab=100.00 E-value=9.5e-64 Score=478.98 Aligned_cols=397 Identities=47% Similarity=0.741 Sum_probs=372.8
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCC----
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDG---- 77 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~---- 77 (418)
++|+|++|.||.+|||+|||..++.|+...|+...++++..+.+++.||+.++|++|+.||+...+.+.++.+..+
T Consensus 234 gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gp 313 (640)
T KOG0102|consen 234 GVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGP 313 (640)
T ss_pred ceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHH
Q psy7645 78 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA 157 (418)
Q Consensus 78 ~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA 157 (418)
.-+++++||.+||+++.++++|++.++.++|++|+++.+||+.|+||||++|+|.|++.+.+.|+ ..+...+||||+||
T Consensus 314 kh~~i~~tr~efe~~v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fg-k~p~~~vnPdeava 392 (640)
T KOG0102|consen 314 KHLNIELTRGEFEELVPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFG-KGPSKGVNPDEAVA 392 (640)
T ss_pred eeEEEeecHHHHHHhhHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhC-CCCCCCcCCcchhc
Confidence 56899999999999999999999999999999999999999999999999999999999999995 67889999999999
Q ss_pred hhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccc
Q psy7645 158 YGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 237 (418)
Q Consensus 158 ~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~ 237 (418)
.|||+++..+++ .++++.+.|++|+++|+++-+|.|..|||+|+.||++++..|.+..|+|..+.|.++||++.+.
T Consensus 393 ~GAaiqggvl~g----eVkdvlLLdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~ 468 (640)
T KOG0102|consen 393 GGAAIQGGVLSG----EVKDVLLLDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMV 468 (640)
T ss_pred cchhhccchhhc----cccceeeeecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhh
Confidence 999999999998 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhH
Q psy7645 238 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 317 (418)
Q Consensus 238 ~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~ 317 (418)
.+|..+|+|.+.++||.|+|.|+|+|+|.+|.||+++|+|.++.+|+.+.+++... +.||+++++.|..+++++...|+
T Consensus 469 ~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~ 547 (640)
T KOG0102|consen 469 NDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDK 547 (640)
T ss_pred ccCcccceeeecccCCCCCCCCceeEEEeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999887 56999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 318 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 318 ~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
..+++.+..|..++++|.....+......++..+..+|...+....+.+..-...+-++...+...|++..-|+....+.
T Consensus 548 ~~~~~ie~~nka~s~~~~te~~~~~~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k 627 (640)
T KOG0102|consen 548 EKREAIETKNKADSIIYDTEKSLKEFEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYK 627 (640)
T ss_pred HHHHHhhhhcchhheecCchhhhhhhhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHh
Confidence 99999999999999999999988765667788888899999999998887533334488899999999999999999888
Q ss_pred CCCCCCC
Q psy7645 398 GAGGASA 404 (418)
Q Consensus 398 ~~~~~~~ 404 (418)
.++.+++
T Consensus 628 ~~~~~~~ 634 (640)
T KOG0102|consen 628 NMGAGGE 634 (640)
T ss_pred hhcccCC
Confidence 7655444
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.5e-60 Score=499.59 Aligned_cols=390 Identities=48% Similarity=0.809 Sum_probs=359.2
Q ss_pred CCEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCC--CceeEEEEeeccC-C
Q psy7645 1 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS--STEASIEIDALYD-G 77 (418)
Q Consensus 1 g~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~--~~~~~i~i~~~~~-~ 77 (418)
++.++|+++.|+..|||.+||.+|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||. +.++.+.++.+.+ |
T Consensus 209 ~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~ 288 (602)
T PF00012_consen 209 NGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDG 288 (602)
T ss_dssp TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTT
T ss_pred cccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 357999999999999999999999999999999999999888999999999999999999999 6777888888887 8
Q ss_pred ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHH
Q psy7645 78 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVA 157 (418)
Q Consensus 78 ~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA 157 (418)
.++.++|||++|+++|.|+++++..+|+++|+++++++.+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||
T Consensus 289 ~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA 367 (602)
T PF00012_consen 289 EDFSITITREEFEELCEPLLERIIEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVA 367 (602)
T ss_dssp EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHH
T ss_pred cccccccccceecccccccccccccccccccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999996 67888999999999
Q ss_pred hhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccc
Q psy7645 158 YGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 237 (418)
Q Consensus 158 ~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~ 237 (418)
+|||++|+.+++ .+..+++.+.|++|++||++..++.+.+++++|+++|...+..|.+..++|..+.+.||+|+....
T Consensus 368 ~GAa~~a~~~~~--~~~~~~~~~~d~~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~ 445 (602)
T PF00012_consen 368 RGAALYAAILSG--SFRVKDIKIIDVTPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSF 445 (602)
T ss_dssp HHHHHHHHHHHT--SCSSTSSCESEBESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBG
T ss_pred cccccchhhhcc--ccccccccccccccccccccccccccccccccccccccccccccchhccccccccceeeecccccc
Confidence 999999999998 677888999999999999999999999999999999999999999999999999999999999888
Q ss_pred cCCceeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhH
Q psy7645 238 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDE 317 (418)
Q Consensus 238 ~~~~~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~ 317 (418)
.++..||++.+.++++.+.|.++|+++|++|.+|+|+|++.+..++....+.+..... +++++++++++++.++...|+
T Consensus 446 ~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~ 524 (602)
T PF00012_consen 446 EDNKKIGSYTISGIPPAPKGKPKIKVTFELDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDE 524 (602)
T ss_dssp GGSEEEEEEEEES-SSSSTTSSEEEEEEEEETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHH
T ss_pred ccccccccccccccccccccccceeeEEeeeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhh
Confidence 8999999999999999999999999999999999999999999988888888877644 999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy7645 318 RQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT-LADKEEYQDKLQQLQKSCMPLMSKMH 396 (418)
Q Consensus 318 ~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~-~a~~~e~~~kl~~L~~~~~~i~~r~~ 396 (418)
..++..+++|+||+++|.+|+.+++...+++++++ .+.+++..+||+++. +++.++|++|+++|++..+||..|++
T Consensus 525 ~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 525 ERRERAEAKNELESYIYELRDKLEEDKDFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCGGGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccccHHHHHHHHHHHHHHHHhhhccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999876667777766 677899999999875 57899999999999999999999987
Q ss_pred c
Q psy7645 397 G 397 (418)
Q Consensus 397 e 397 (418)
+
T Consensus 602 ~ 602 (602)
T PF00012_consen 602 Q 602 (602)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=8e-60 Score=485.30 Aligned_cols=368 Identities=33% Similarity=0.499 Sum_probs=324.2
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeE
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFY 81 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~ 81 (418)
+.|+|++++||.+|||+|||.+|++|+.++|.. ..+.+ .+..||++|+.||.+....+ ..
T Consensus 215 ~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~ 274 (595)
T PRK01433 215 GIFQVIATNGDNMLGGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DN 274 (595)
T ss_pred CeEEEEEEcCCcccChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ce
Confidence 579999999999999999999999999988732 22222 23459999999998765321 17
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
++|||++|+++|+|+++++..+++++|++++ +.+|+.|+||||+||||+|++.|++.|+ ..+..++|||+|||+|||
T Consensus 275 ~~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAA 351 (595)
T PRK01433 275 ISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFK-VDILSDIDPDKAVVWGAA 351 (595)
T ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhC-CCceecCCchHHHHHHHH
Confidence 8999999999999999999999999999998 6789999999999999999999999995 567788999999999999
Q ss_pred HHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCCc
Q psy7645 162 VQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241 (418)
Q Consensus 162 ~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~~ 241 (418)
++|+.+++ ...++.+.|++|++||+++.+|.+.+|||||++||++++..|++..|+|+.+.|.||||++..+.+|.
T Consensus 352 i~a~~l~~----~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~ 427 (595)
T PRK01433 352 LQAENLIA----PHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCR 427 (595)
T ss_pred HHHHHhhC----CccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCc
Confidence 99999986 23578899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHHH
Q psy7645 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKE 321 (418)
Q Consensus 242 ~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r~ 321 (418)
.||+|.|.++|+.++|.++|+|+|++|.||+|+|++.+..||+...+.|.+. ..||++|+++++++++++..+|...++
T Consensus 428 ~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~ 506 (595)
T PRK01433 428 SLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRL 506 (595)
T ss_pred EEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999865 569999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHH-HHHHHHHHHHHHh
Q psy7645 322 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL----ADKEEYQDKLQQ-LQKSCMPLMSKMH 396 (418)
Q Consensus 322 ~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~----a~~~e~~~kl~~-L~~~~~~i~~r~~ 396 (418)
..+++|++|+++|.+++.+++....+++++++.+...++++++||+.+.. ...+++++.++. |++.++|++.+++
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 586 (595)
T PRK01433 507 LQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDTKLNIIINDLL 586 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 99999999999999999997545568999999999999999999985521 123444455555 5555666666655
Q ss_pred c
Q psy7645 397 G 397 (418)
Q Consensus 397 e 397 (418)
+
T Consensus 587 ~ 587 (595)
T PRK01433 587 K 587 (595)
T ss_pred c
Confidence 4
No 17
>KOG0103|consensus
Probab=100.00 E-value=2.4e-58 Score=454.08 Aligned_cols=388 Identities=31% Similarity=0.517 Sum_probs=344.1
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeE
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFY 81 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~ 81 (418)
|.++|+++.+|.++||+|||.+|.+||.++|+.+|++|+.++++++.||+.+||++|+.||+++...++|++++++.|.+
T Consensus 218 G~lkvl~ta~D~~lGgr~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs 297 (727)
T KOG0103|consen 218 GKLKVLATAFDRKLGGRDFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVS 297 (727)
T ss_pred CcceeeeeecccccccchHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
..|+|++||++|.|+++|+..++.++|++++++.+||+.|++|||+||||.|++.|.++| ++.+.+++|.|+|||+|||
T Consensus 298 ~~i~ReEfEel~~plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~A 376 (727)
T KOG0103|consen 298 SKIKREEFEELSAPLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAA 376 (727)
T ss_pred hhccHHHHHHHHHHHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999999999999999 5789999999999999999
Q ss_pred HHHHHHhCCCCccccceEEEeecceeeEEEEeC-----CeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecC-cc
Q psy7645 162 VQAAILSGDQSSAIQDVLLVDVTPLSLGIETAG-----GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGE-RA 235 (418)
Q Consensus 162 ~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~-----~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~-~~ 235 (418)
+++|++|+ .++++.+.+.|+.||++.+.+.. +....+||+|.++|.++..+|.... .+.+..+++. ..
T Consensus 377 LqcAIlSP--~frVRef~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~ 450 (727)
T KOG0103|consen 377 LQCAILSP--TFRVREFSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNK 450 (727)
T ss_pred HHHHhcCc--cccceecceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccc
Confidence 99999999 89999999999999999888642 4457799999999999998887644 4678777765 44
Q ss_pred cccCCceeeEEEecCCCCCCC-CCCeeEEEEEecCCceEEEEEEec--------------C--------------CCc--
Q psy7645 236 MTKDNNLLGTFDLTGIPPAPR-GVPKIDVTFDLDANGILNVTAKDT--------------S--------------SGK-- 284 (418)
Q Consensus 236 ~~~~~~~lg~~~l~~~~~~~~-g~~~i~v~~~id~~g~l~v~~~~~--------------~--------------~g~-- 284 (418)
++.....|++|.+.++.+... ...+++|...++.+|++.|...-. . .++
T Consensus 451 lp~~~~kI~~~~i~~v~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~k 530 (727)
T KOG0103|consen 451 LPYPKPKIEKWTITGVTPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKK 530 (727)
T ss_pred cCCCCCceeeEEecccccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccce
Confidence 554456799999998877666 346799999999999999853210 0 010
Q ss_pred cc--eeeecc-CCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHH
Q psy7645 285 SQ--NITIKN-DKGRLSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNA-GNKLTESEKSRCREECD 360 (418)
Q Consensus 285 ~~--~i~i~~-~~~~ls~eei~~~~~~~~~~~~~D~~~r~~~~arN~LE~~iy~~r~~L~~~-~~~~~~~e~~~i~~~l~ 360 (418)
.. .+.+.. ..+.++..+++.+++++.+|...|+...++..++|.||+|+|.||++|.+. .++++++++++|...|+
T Consensus 531 vk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~ 610 (727)
T KOG0103|consen 531 VKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLT 610 (727)
T ss_pred eeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHH
Confidence 00 111211 125799999999999999999999999999999999999999999999988 78999999999999999
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy7645 361 ATLKWLDNNT-LADKEEYQDKLQQLQKSCMPLMSKMHGG 398 (418)
Q Consensus 361 ~~~~WL~~~~-~a~~~e~~~kl~~L~~~~~~i~~r~~e~ 398 (418)
++++|||+++ +.++..|..|+.+|+++.+ ..|+.+.
T Consensus 611 ~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~ 647 (727)
T KOG0103|consen 611 DTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDEN 647 (727)
T ss_pred HHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhh
Confidence 9999999765 7999999999999999998 6666664
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-57 Score=465.14 Aligned_cols=385 Identities=54% Similarity=0.796 Sum_probs=367.6
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeE
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFY 81 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~ 81 (418)
+.|+|++++||++|||+|||.+|++|+..+|+.+++.++..+++.+.||+.+||++|+.||+..++.+.++.+..+.++.
T Consensus 194 g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~ 273 (579)
T COG0443 194 GVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLL 273 (579)
T ss_pred CEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999998877777789
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.+|||++||+++.+++.++..+++.++.++++++.+|+.|+||||+||||.|++.++++|+ +.+..++|||++||.|||
T Consensus 274 ~~ltR~~~E~l~~dll~r~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa 352 (579)
T COG0443 274 KELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAA 352 (579)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 788899999999999999
Q ss_pred HHHHHHhCCCCccccceEEEeecceeeEEEEeCCeEEEEEecCCccccceeeeeeeeccCCCceEEEEEecCcccccCCc
Q psy7645 162 VQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 241 (418)
Q Consensus 162 ~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~eg~~~~~~~~~ 241 (418)
++|+.+++ ...++.+.|++|+++|++..++.+..++++|+++|.++...|.+..|+|..+.+.+++|++.+..+|.
T Consensus 353 ~qa~~l~~----~~~d~ll~Dv~plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~ 428 (579)
T COG0443 353 IQAAVLSG----EVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNK 428 (579)
T ss_pred HHHHhhcC----cccCceEEeeeeeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCc
Confidence 99999988 22388999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCCCCCCCCeeEEEEEecCCceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHHhhhhHHHHH
Q psy7645 242 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDERQKE 321 (418)
Q Consensus 242 ~lg~~~l~~~~~~~~g~~~i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~r~ 321 (418)
.+|.|.+.++|+.++|.++|+++|.+|.||+++|++.+..+|+...++|....+ |++++++.|.+.+..+.+.|...++
T Consensus 429 ~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~ 507 (579)
T COG0443 429 SLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRE 507 (579)
T ss_pred eeEEEECCCCCCCCCCCCceEEEeccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999867 9999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 322 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 322 ~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
..+.+|..+++++.++..|.+.. .++++++.++..++.+++.||+. . .+++..+.++|+....++..++++
T Consensus 508 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 508 LVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHhhHHHHHHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999997666 89999999999999999999998 2 899999999999999999988764
No 19
>KOG0104|consensus
Probab=100.00 E-value=1.1e-49 Score=393.72 Aligned_cols=388 Identities=32% Similarity=0.492 Sum_probs=331.2
Q ss_pred CEEEEEEEcCCCCCchHHHHHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCce
Q psy7645 2 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKYKK--DMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGID 79 (418)
Q Consensus 2 ~~~~V~a~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d 79 (418)
..++|+++++|..|||..|.++|.+|+.+.|.+.++. ++..+||++++|.++|+++|..||+|..+.++|+++++++|
T Consensus 247 p~i~~~gvGfd~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiD 326 (902)
T KOG0104|consen 247 PQIQVLGVGFDRTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDID 326 (902)
T ss_pred ceEEEEeeccCCccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccc
Confidence 4789999999999999999999999999999988874 67789999999999999999999999999999999999999
Q ss_pred eEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 80 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 80 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
|..+|||++||++|+++..|+..+|.++|..++++.++|+.|+|+||+||+|.||+.|.++.+..++..++|+|||+++|
T Consensus 327 Fr~kvTRe~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmG 406 (902)
T KOG0104|consen 327 FRLKVTREEFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMG 406 (902)
T ss_pred cccceeHHHHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred HHHHHHHHhCCCCccccceEEEeecceeeEEEEeCC--------eEEEEEecCCccccceeeeeeeeccCCCceEEEEEe
Q psy7645 160 AAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG--------VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 231 (418)
Q Consensus 160 Aa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~--------~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~i~e 231 (418)
|+++|+.||. +|+++++.+.|.++|+|-++.... .-..+|+++.++|.++..+|+.+.|+ +.+.+-.
T Consensus 407 av~~aA~LSk--sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~ 481 (902)
T KOG0104|consen 407 AVYQAAHLSK--SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINY 481 (902)
T ss_pred HHHHHHhhcc--cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccch
Confidence 9999999998 999999999999988887775432 12348999999999987778766654 3333322
Q ss_pred cCcccccCCceeeEEEecCCCCCC----C---CCCeeEEEEEecCCceEEEEEEec---------------------CC-
Q psy7645 232 GERAMTKDNNLLGTFDLTGIPPAP----R---GVPKIDVTFDLDANGILNVTAKDT---------------------SS- 282 (418)
Q Consensus 232 g~~~~~~~~~~lg~~~l~~~~~~~----~---g~~~i~v~~~id~~g~l~v~~~~~---------------------~~- 282 (418)
+.-. ..+.+|.+.++...- . ...-|++.|.+|.+|++.|+..+. ++
T Consensus 482 ~~~~-----~nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~ 556 (902)
T KOG0104|consen 482 GDLG-----QNLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTS 556 (902)
T ss_pred hhhc-----cCccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhcccccc
Confidence 2110 124477777664321 1 134589999999999998864310 00
Q ss_pred ----------------------Cc-cc-------------------------------------eeeeccCC---CCCCH
Q psy7645 283 ----------------------GK-SQ-------------------------------------NITIKNDK---GRLSK 299 (418)
Q Consensus 283 ----------------------g~-~~-------------------------------------~i~i~~~~---~~ls~ 299 (418)
++ .. .+.|...+ +.|..
T Consensus 557 e~e~~~~~~~~~e~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~ 636 (902)
T KOG0104|consen 557 EGEETSDDSVQEEDAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNE 636 (902)
T ss_pred ccccccccccchhhhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCch
Confidence 00 00 12333221 35889
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHHHHHHHhcCC-CCCHHH
Q psy7645 300 EEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNA--GNKLTESEKSRCREECDATLKWLDNNT-LADKEE 376 (418)
Q Consensus 300 eei~~~~~~~~~~~~~D~~~r~~~~arN~LE~~iy~~r~~L~~~--~~~~~~~e~~~i~~~l~~~~~WL~~~~-~a~~~e 376 (418)
..++...++++.+...|....++++|.|.||.|+|++.++|.++ ..+.+++|+..|.+.+..+.+||+++. .+++++
T Consensus 637 ~~~~~~~~kl~d~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~ 716 (902)
T KOG0104|consen 637 NALDAAVAKLEDFVQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEM 716 (902)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhH
Confidence 99999999999999999999999999999999999999999877 789999999999999999999999865 678999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy7645 377 YQDKLQQLQKSCMPLMSKMHGGA 399 (418)
Q Consensus 377 ~~~kl~~L~~~~~~i~~r~~e~~ 399 (418)
|.+++.+|++++..+..|..++.
T Consensus 717 ~~ek~a~L~~l~~~~~~R~ee~k 739 (902)
T KOG0104|consen 717 LTEKLAELKKLETSKNFREEERK 739 (902)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999988764
No 20
>PRK11678 putative chaperone; Provisional
Probab=99.91 E-value=1.3e-23 Score=209.97 Aligned_cols=158 Identities=26% Similarity=0.316 Sum_probs=131.0
Q ss_pred EEEEEEEcCCCCCchHHHHHHHH-HHHHHHHHH----hhcCCC-----------------------------------CC
Q psy7645 3 LFEVRSTAGDTHLGGEDFDNRLV-SHLAEEFKR----KYKKDM-----------------------------------SV 42 (418)
Q Consensus 3 ~~~V~a~~gd~~LGG~d~D~~l~-~~~~~~~~~----~~~~~~-----------------------------------~~ 42 (418)
.++|+|++| .+|||+|||.+|+ +|+.+.|.. +++.++ ..
T Consensus 239 ~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 317 (450)
T PRK11678 239 SASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDVPAQSDFYSLANGRLLNDLIRDAR 317 (450)
T ss_pred ceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhccchhhhhhhhhhHHHHHHHhhccc
Confidence 368999999 5899999999997 678887752 112111 01
Q ss_pred CHHHH------------HHHHHHHHHHHHhcCCCceeEEEEeeccCCceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHH
Q psy7645 43 NPRAL------------RRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTLQPVEKALQD 110 (418)
Q Consensus 43 ~~~~~------------~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~ 110 (418)
+|+.+ .+|+.+||++|+.||.+.++.+.++.+. .++..+|||++|+++|+|+++++..+++++|++
T Consensus 318 ~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~ 395 (450)
T PRK11678 318 EPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DGLATEISQQGLEEAISQPLARILELVQLALDQ 395 (450)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 3688999999999999999999988654 357899999999999999999999999999999
Q ss_pred cCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHH
Q psy7645 111 AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 167 (418)
Q Consensus 111 ~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~l 167 (418)
+++. ++.|+||||+||||.|++.|.+.||..+ ....+|.++||.|+|++|..+
T Consensus 396 a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~-v~~g~~~~sVa~Gla~~a~~~ 448 (450)
T PRK11678 396 AQVK---PDVIYLTGGSARSPLIRAALAQQLPGIP-IVGGDDFGSVTAGLARWAQVV 448 (450)
T ss_pred cCCC---CCEEEEcCcccchHHHHHHHHHHCCCCc-EEeCCCcchHHHHHHHHHHhh
Confidence 9986 4899999999999999999999997554 456799999999999999653
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.77 E-value=6e-18 Score=164.76 Aligned_cols=145 Identities=19% Similarity=0.337 Sum_probs=117.7
Q ss_pred EcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc----eeEEEEe--eccCCceeEE
Q psy7645 9 TAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEID--ALYDGIDFYT 82 (418)
Q Consensus 9 ~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~--~~~~~~d~~~ 82 (418)
+.++..+||+|||+.|++++.++|... +. ...||++|+.++... ...+.+. .+..+.+..+
T Consensus 171 ~~~~~~lGG~did~~i~~~l~~~~~~~----~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 237 (336)
T PRK13928 171 TSSSIKVAGDKFDEAIIRYIRKKYKLL----IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTI 237 (336)
T ss_pred EeCCcCCHHHHHHHHHHHHHHHHhchh----cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEE
Confidence 456789999999999999998776321 11 256999999987531 2333332 2344667789
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHHHHcC--CCccccc-eEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKALQDAK--LDKSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~~--~~~~~i~-~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
+|+|++|++++.++++++.+.++++|..++ +..+.++ .|+|+||+|++|.|++.|++.|+ .++....||++|||+|
T Consensus 238 ~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~-~~v~~~~~P~~ava~G 316 (336)
T PRK13928 238 TVTSEEIREALKEPVSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETK-VPVYIAEDPISCVALG 316 (336)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHC-CCceecCCHHHHHHHH
Confidence 999999999999999999999999999986 4556777 79999999999999999999994 6677788999999999
Q ss_pred HHHHHHHH
Q psy7645 160 AAVQAAIL 167 (418)
Q Consensus 160 Aa~~a~~l 167 (418)
||+++..+
T Consensus 317 aa~~~~~~ 324 (336)
T PRK13928 317 TGKMLENI 324 (336)
T ss_pred HHHHHhch
Confidence 99998764
No 22
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.70 E-value=4.2e-16 Score=151.81 Aligned_cols=144 Identities=19% Similarity=0.323 Sum_probs=113.9
Q ss_pred EcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCce----eEEEE--eeccCCceeEE
Q psy7645 9 TAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE----ASIEI--DALYDGIDFYT 82 (418)
Q Consensus 9 ~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i--~~~~~~~d~~~ 82 (418)
..++..+||++||+.|.+++.+++. ..+ + ...||++|+.|+.... ..+.+ +.+..+.+..+
T Consensus 172 ~~~~~~lGG~~id~~l~~~l~~~~~----~~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (334)
T PRK13927 172 YSKSVRVGGDKFDEAIINYVRRNYN----LLI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTI 238 (334)
T ss_pred eeCCcCChHHHHHHHHHHHHHHHhC----cCc--C-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEE
Confidence 3566789999999999999986552 221 1 2468999999975432 22333 23345566789
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCC--ccccc-eEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
+|+|++|++++.+.+.++.+.|.++|+.++.. ...++ .|+|+||+|++|.+++.|++.|+ .++....||+++||.|
T Consensus 239 ~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~-~~v~~~~~P~~ava~G 317 (334)
T PRK13927 239 TISSNEIREALQEPLSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETG-LPVHVAEDPLTCVARG 317 (334)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHC-CCcEecCCHHHHHHHH
Confidence 99999999999999999999999999998643 23334 59999999999999999999994 6677788999999999
Q ss_pred HHHHHHH
Q psy7645 160 AAVQAAI 166 (418)
Q Consensus 160 Aa~~a~~ 166 (418)
||+++..
T Consensus 318 a~~~~~~ 324 (334)
T PRK13927 318 TGKALEN 324 (334)
T ss_pred HHHHHhh
Confidence 9999864
No 23
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.65 E-value=1.6e-15 Score=147.40 Aligned_cols=142 Identities=18% Similarity=0.343 Sum_probs=113.7
Q ss_pred EcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc----eeEEEEe--eccCCceeEE
Q psy7645 9 TAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEID--ALYDGIDFYT 82 (418)
Q Consensus 9 ~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i~--~~~~~~d~~~ 82 (418)
..++..+||++||+.|++|+.+.+ +..+ + ...||++|+.|+... ...+.+. ++..+.+..+
T Consensus 174 ~~~~~~~GG~~id~~l~~~l~~~~----~~~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i 240 (335)
T PRK13929 174 SCHSIRIGGDQLDEDIVSFVRKKY----NLLI--G-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI 240 (335)
T ss_pred EecCcCCHHHHHHHHHHHHHHHHh----CcCc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEE
Confidence 456679999999999999998654 2222 1 257999999998631 2233332 2334556789
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCC--ccccc-eEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~-~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
+|+|++|+++|.+++.++.+.|.++|+.+... .+.++ .|+|+||+|++|.+++++++.| +.++....||+++||.|
T Consensus 241 ~i~~~~~~~~i~~~l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~G 319 (335)
T PRK13929 241 TLESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIG 319 (335)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHH
Confidence 99999999999999999999999999998643 36677 6999999999999999999999 46677778999999999
Q ss_pred HHHHH
Q psy7645 160 AAVQA 164 (418)
Q Consensus 160 Aa~~a 164 (418)
|+..-
T Consensus 320 a~~~~ 324 (335)
T PRK13929 320 TGRSL 324 (335)
T ss_pred HHHHH
Confidence 99864
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.63 E-value=5.4e-15 Score=143.85 Aligned_cols=144 Identities=19% Similarity=0.339 Sum_probs=111.3
Q ss_pred EcCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCce-----eEEEEee--ccCCceeE
Q psy7645 9 TAGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE-----ASIEIDA--LYDGIDFY 81 (418)
Q Consensus 9 ~~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~-----~~i~i~~--~~~~~d~~ 81 (418)
..++..+||+|||+.|++|+.+++. ..+ . +..||++|+.|+.... ..+.+.. ...+....
T Consensus 174 ~~~~~~lGG~did~~l~~~l~~~~~----~~~--~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (333)
T TIGR00904 174 VSRSIRVGGDEFDEAIINYIRRTYN----LLI--G-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRT 240 (333)
T ss_pred ecCCccchHHHHHHHHHHHHHHHhc----ccC--C-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeE
Confidence 4456789999999999999986652 222 1 3579999999975322 2222211 12234456
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCc-ccc-c-eEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHh
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDK-SAI-H-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAY 158 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~-~~i-~-~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~ 158 (418)
++|+|++|.+++.+.+.++.+.+.++++.+.... .++ + .|+|+||+|++|.+++.|++.| +.++....||+++||.
T Consensus 241 ~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~ 319 (333)
T TIGR00904 241 IEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAK 319 (333)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHH
Confidence 7999999999999999999999999999887542 244 3 7999999999999999999999 4677788899999999
Q ss_pred hHHHHHHH
Q psy7645 159 GAAVQAAI 166 (418)
Q Consensus 159 GAa~~a~~ 166 (418)
|||+++..
T Consensus 320 Ga~~~~~~ 327 (333)
T TIGR00904 320 GTGKALED 327 (333)
T ss_pred HHHHHHhC
Confidence 99998743
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.61 E-value=6.9e-15 Score=143.35 Aligned_cols=143 Identities=19% Similarity=0.312 Sum_probs=111.9
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCce----eEEEEe--eccCCceeEEE
Q psy7645 10 AGDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE----ASIEID--ALYDGIDFYTK 83 (418)
Q Consensus 10 ~gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~----~~i~i~--~~~~~~d~~~~ 83 (418)
.+...+||.|||+.|++++..++ +.++. ...||++|+.|+.... ..+.+. .+..+.+..++
T Consensus 177 ~~~~~lGG~~id~~l~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (335)
T PRK13930 177 SESIRVAGDEMDEAIVQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIE 243 (335)
T ss_pred ecCcCchhHHHHHHHHHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEE
Confidence 45679999999999999998764 22221 2479999999975432 223332 22344556889
Q ss_pred eCHHHHHHHHhHHHHhhHHHHHHHHHHcCCC--ccccce-EEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 84 ISRARFEELCSDLFRSTLQPVEKALQDAKLD--KSAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 84 itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~--~~~i~~-V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
|+|++|++++.+.+.++.+.+.++++.+... .+.++. |+|+||+|++|.++++|.+.|+ .++....+|+++||+||
T Consensus 244 i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~-~~v~~~~~p~~ava~Ga 322 (335)
T PRK13930 244 ISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETG-LPVHIAEDPLTCVARGT 322 (335)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHC-CCceecCCHHHHHHHHH
Confidence 9999999999999999999999999987533 233464 9999999999999999999995 56677789999999999
Q ss_pred HHHHHH
Q psy7645 161 AVQAAI 166 (418)
Q Consensus 161 a~~a~~ 166 (418)
|+.+..
T Consensus 323 ~~~~~~ 328 (335)
T PRK13930 323 GKALEN 328 (335)
T ss_pred HHHHhC
Confidence 998854
No 26
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.38 E-value=4.2e-12 Score=119.32 Aligned_cols=107 Identities=18% Similarity=0.276 Sum_probs=91.6
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeEEEeCHHHHH
Q psy7645 11 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE 90 (418)
Q Consensus 11 gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~~~itr~~fe 90 (418)
++..+||++||+.|++++. .+ +.+||++|+.++ +++++.
T Consensus 161 ~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~----------------------~~~~~~ 199 (267)
T PRK15080 161 ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK----------------------HHKEIF 199 (267)
T ss_pred ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC----------------------CHHHHH
Confidence 5679999999999987652 11 357899998753 357899
Q ss_pred HHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHH
Q psy7645 91 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a 164 (418)
++++|+++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.| +.++..+.||+.++|+|||+||
T Consensus 200 ~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 200 PVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 999999999999999999864 5789999999999999999999999 5677788999999999999874
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.34 E-value=3.7e-12 Score=117.68 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=87.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeEEEeCHHHHH
Q psy7645 11 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFE 90 (418)
Q Consensus 11 gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~~~itr~~fe 90 (418)
.+..+||++||+.|++++ +++ +.+||++|+.++ +.+++.
T Consensus 134 ~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~~K~~~~----------------------~~~~~~ 172 (239)
T TIGR02529 134 ADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEEYKRGHK----------------------DEEEIF 172 (239)
T ss_pred EeeecchHHHHHHHHHHh--------CCC-----------HHHHHHHHHhcC----------------------CHHHHH
Confidence 456899999999887543 222 257999998764 145678
Q ss_pred HHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHH
Q psy7645 91 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~ 162 (418)
+++.++++++...+++.|++.+ ++.|+|+||+|++|.+++.+++.| +.++..+.||+++||.|||+
T Consensus 173 ~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 173 PVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 8999999999999999998653 579999999999999999999999 56777889999999999986
No 28
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.30 E-value=1.4e-11 Score=121.78 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=101.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC------ceeEEEEeeccCCceeEEEe
Q psy7645 11 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS------TEASIEIDALYDGIDFYTKI 84 (418)
Q Consensus 11 gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~------~~~~i~i~~~~~~~d~~~~i 84 (418)
....+||++||+.|++.+. ..+.+||++|+.++.. .+..+.++.+. .+....|
T Consensus 222 ~~i~~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~i 280 (371)
T TIGR01174 222 KVIPIGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSL 280 (371)
T ss_pred eeecchHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEE
Confidence 3467999999998876431 1256799999999763 24556665443 3567899
Q ss_pred CHHHHHHHHhHHHHhhHHHHH-HHHHHcCCCccccce-EEEecCCCCcHHHHHHHHHHhcCCcccc------------cC
Q psy7645 85 SRARFEELCSDLFRSTLQPVE-KALQDAKLDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNL------------SI 150 (418)
Q Consensus 85 tr~~fe~l~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-V~lvGGssriP~v~~~l~~~f~~~~~~~------------~~ 150 (418)
||++|++++.+.++++...++ +.|++++.+ .+++. |+|+||+|++|.|++.+++.|+. ++.. .-
T Consensus 281 s~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~-~vr~~~P~~~~~~~~~~~ 358 (371)
T TIGR01174 281 SRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDN-PVRIGLPQNIGGLTEDVN 358 (371)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCC-CeEEECCCccCCchhhcC
Confidence 999999999999999999997 999999876 67887 99999999999999999999963 2211 12
Q ss_pred CchhhHHhhHHHH
Q psy7645 151 NPDEAVAYGAAVQ 163 (418)
Q Consensus 151 ~pdeaVA~GAa~~ 163 (418)
+|..++|.|.++|
T Consensus 359 ~p~~~~a~Gl~~~ 371 (371)
T TIGR01174 359 DPEYSTAVGLLLY 371 (371)
T ss_pred CcHHHHHHHHHhC
Confidence 6778888888764
No 29
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.17 E-value=1.5e-10 Score=110.84 Aligned_cols=136 Identities=21% Similarity=0.380 Sum_probs=106.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc----eeEEEE--eeccCCceeEEEeCH
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----EASIEI--DALYDGIDFYTKISR 86 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----~~~i~i--~~~~~~~d~~~~itr 86 (418)
...||++||++|.+|+.+++. ..+ . ...||++|+.++... ...+.+ .++..|..-.+.|+-
T Consensus 173 i~~gG~~~DeaI~~~ir~~y~----l~I--g-------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~ 239 (326)
T PF06723_consen 173 IRIGGDDIDEAIIRYIREKYN----LLI--G-------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITS 239 (326)
T ss_dssp ES-SHHHHHHHHHHHHHHHHS----EE-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEH
T ss_pred EEecCcchhHHHHHHHHHhhC----ccc--C-------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcH
Confidence 378999999999999998873 222 1 236899999987532 223444 355678889999999
Q ss_pred HHHHHHHhHHHHhhHHHHHHHHHHcCCCcc---cc--ceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 87 ARFEELCSDLFRSTLQPVEKALQDAKLDKS---AI--HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 87 ~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~---~i--~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
+++.++|.+.+.++.+.++++|+.. +|+ || +.|+|+||+|+++.+.++|++.+ +.++...-||..|||.||.
T Consensus 240 ~ev~~ai~~~~~~I~~~i~~~Le~~--pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~ 316 (326)
T PF06723_consen 240 SEVREAIEPPVDQIVEAIKEVLEKT--PPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAG 316 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTS---HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHH
Confidence 9999999999999999999999975 343 33 57999999999999999999999 5788889999999999999
Q ss_pred HHH
Q psy7645 162 VQA 164 (418)
Q Consensus 162 ~~a 164 (418)
...
T Consensus 317 ~~l 319 (326)
T PF06723_consen 317 KLL 319 (326)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.06 E-value=1.6e-09 Score=108.56 Aligned_cols=131 Identities=17% Similarity=0.235 Sum_probs=96.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcC----CC--ceeEEEEeeccCCceeEEEeCH
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLS----SS--TEASIEIDALYDGIDFYTKISR 86 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS----~~--~~~~i~i~~~~~~~d~~~~itr 86 (418)
-.+||++|++.|+..+. + -+..||++|+... .. .+..+.++.+..+. ...++|
T Consensus 232 i~~GG~~it~dIa~~l~----------i---------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~ 290 (420)
T PRK09472 232 IPYAGNVVTSDIAYAFG----------T---------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQR 290 (420)
T ss_pred eechHHHHHHHHHHHhC----------c---------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcH
Confidence 56799999998875441 1 1357999996643 21 23456665443222 348899
Q ss_pred HHHHHHHhHHHHhhHHHH-------HHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccc-----------
Q psy7645 87 ARFEELCSDLFRSTLQPV-------EKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL----------- 148 (418)
Q Consensus 87 ~~fe~l~~~~~~~~~~~i-------~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~----------- 148 (418)
.+|.+++.+.++.+.+.+ ...+..+++....++.|+|+||+|++|.|++.+++.|+ .++..
T Consensus 291 ~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~ 369 (420)
T PRK09472 291 QTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTD 369 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChh
Confidence 999999999555555444 55667788888889999999999999999999999995 32211
Q ss_pred -cCCchhhHHhhHHHHHH
Q psy7645 149 -SINPDEAVAYGAAVQAA 165 (418)
Q Consensus 149 -~~~pdeaVA~GAa~~a~ 165 (418)
..+|..|+|.|.++|+.
T Consensus 370 ~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 370 YAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred hcCCcHHHHHHHHHHHhh
Confidence 24899999999999986
No 31
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=98.65 E-value=2.1e-07 Score=86.75 Aligned_cols=142 Identities=19% Similarity=0.328 Sum_probs=111.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC--------ceeEEEEeeccCCceeEEEe
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS--------TEASIEIDALYDGIDFYTKI 84 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~--------~~~~i~i~~~~~~~d~~~~i 84 (418)
..+||+.||++|.+|+.++|+ .-+ .++ .||++|+..-.. .+..+.-.++..|..-.+++
T Consensus 181 irv~GD~~De~Ii~yvr~~~n----l~I--Ge~-------taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i 247 (342)
T COG1077 181 VRVGGDKMDEAIIVYVRKKYN----LLI--GER-------TAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITI 247 (342)
T ss_pred EEEecchhhHHHHHHHHHHhC----eee--cHH-------HHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEE
Confidence 479999999999999988764 222 233 277888776322 22344445566777888999
Q ss_pred CHHHHHHHHhHHHHhhHHHHHHHHHHcC--CCccccce-EEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 85 SRARFEELCSDLFRSTLQPVEKALQDAK--LDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 85 tr~~fe~l~~~~~~~~~~~i~~~l~~~~--~~~~~i~~-V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
+-++..+.+++.++++.+.++.+|+... +..+=++. ++|+||+|.+.-+.+.|.+.. +.++...-+|-.|||+|+.
T Consensus 248 ~s~ev~eal~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G 326 (342)
T COG1077 248 NSEEIAEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTG 326 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccc
Confidence 9999999999999999999999999853 33333455 999999999999999999988 4567778899999999999
Q ss_pred HHHHHHh
Q psy7645 162 VQAAILS 168 (418)
Q Consensus 162 ~~a~~ls 168 (418)
+....+.
T Consensus 327 ~~le~~~ 333 (342)
T COG1077 327 KALEALD 333 (342)
T ss_pred hhhhhhH
Confidence 8776553
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.08 E-value=3.4e-05 Score=76.29 Aligned_cols=135 Identities=23% Similarity=0.383 Sum_probs=104.7
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCC------CceeEEEEeeccCCceeEEEe
Q psy7645 11 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSS------STEASIEIDALYDGIDFYTKI 84 (418)
Q Consensus 11 gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~------~~~~~i~i~~~~~~~d~~~~i 84 (418)
+--.+||++++..|+.-|.-. +..||++|..... .....+.++...+. ...++
T Consensus 229 ~~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~--~~~~~ 287 (418)
T COG0849 229 GVIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD--IPRQV 287 (418)
T ss_pred eeEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc--ccchh
Confidence 335789999999988655321 2357788877633 23445666655433 37789
Q ss_pred CHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcc--cc----------cCCc
Q psy7645 85 SRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL--NL----------SINP 152 (418)
Q Consensus 85 tr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~--~~----------~~~p 152 (418)
||..+.+++++-+.++..+++..|+++++...-...|+|+||++.+|.+.+..++.|+ .++ .. ..+|
T Consensus 288 t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p 366 (418)
T COG0849 288 TRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNP 366 (418)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCc
Confidence 9999999999999999999999999999986677999999999999999999999995 221 11 2367
Q ss_pred hhhHHhhHHHHHHHH
Q psy7645 153 DEAVAYGAAVQAAIL 167 (418)
Q Consensus 153 deaVA~GAa~~a~~l 167 (418)
..+.|.|..+|++..
T Consensus 367 ~fs~avGl~~~~~~~ 381 (418)
T COG0849 367 AFSTAVGLLLYGALM 381 (418)
T ss_pred hhhhhHHHHHHHhhc
Confidence 889999999988753
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=97.44 E-value=0.00019 Score=71.00 Aligned_cols=143 Identities=22% Similarity=0.245 Sum_probs=86.1
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCce---e----------EEE-EeeccC
Q psy7645 11 GDTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTE---A----------SIE-IDALYD 76 (418)
Q Consensus 11 gd~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~---~----------~i~-i~~~~~ 76 (418)
....+||+++|+.|.+++..+.. ..+.. .-...++.+|+.+..-.. . ... .-.+.+
T Consensus 171 ~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 171 KRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred eeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 34689999999999998765321 00111 112345666666432100 0 000 001222
Q ss_pred CceeEEEeCHHHHHHHHhHHHH---------hhHHHHHHHHHHcCC--CccccceEEEecCCCCcHHHHHHHHHHhcCC-
Q psy7645 77 GIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKL--DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK- 144 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~--~~~~i~~V~lvGGssriP~v~~~l~~~f~~~- 144 (418)
+. .+.++.+.| .+++.++. .+.+.|.+++..... ...-++.|+|+||+|++|-+.+.|.+.+...
T Consensus 241 ~~--~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~ 317 (371)
T cd00012 241 GR--TIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLA 317 (371)
T ss_pred Ce--EEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhC
Confidence 32 455665544 33444444 567778888876543 2233688999999999999999988777421
Q ss_pred --------cccccCCchhhHHhhHHHHHHH
Q psy7645 145 --------SLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 145 --------~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
.+....+|..++-+||+++|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 318 PPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred CcccceEEEEccCCCccccEEeCchhhcCc
Confidence 1234567889999999999854
No 34
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.41 E-value=0.00087 Score=65.47 Aligned_cols=73 Identities=21% Similarity=0.357 Sum_probs=45.2
Q ss_pred HHHhHHHHhhHHHHHHHHHH--cCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcc---------cccC---------
Q psy7645 91 ELCSDLFRSTLQPVEKALQD--AKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSL---------NLSI--------- 150 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~--~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~---------~~~~--------- 150 (418)
+.+.+.++++..-|++.++- +......|+.|+|+||++++|.+.+.|.+.++ .++ ..+.
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~-~~v~~~~p~~~~~~~~~~~~~~~~~ 324 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELG-IPVEVINPFKNIKLDPKINSEYLQE 324 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHT-SEEEE--GGGGSB--TTS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHC-CceEEcChHHhCccCcccChhhhhh
Confidence 44555555555555555441 22334579999999999999999999999995 221 1111
Q ss_pred -CchhhHHhhHHHHH
Q psy7645 151 -NPDEAVAYGAAVQA 164 (418)
Q Consensus 151 -~pdeaVA~GAa~~a 164 (418)
.|..+||.|.|+..
T Consensus 325 ~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 325 DAPQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcC
Confidence 36678999999864
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.26 E-value=0.00079 Score=65.77 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=64.1
Q ss_pred HHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHH
Q psy7645 86 RARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 86 r~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
++++.++++++++++...++..+.. ..+++.|+|+||++++ +++.|++.|+. +...-||..|.|+|...+|.
T Consensus 264 ~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~ 335 (344)
T PRK13917 264 KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD--VEKADESQFANVRGYYKYGE 335 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC--eEEcCChHHHHHHHHHHHHH
Confidence 5678889999999999998888753 3478999999999987 88999999964 35667999999999999998
Q ss_pred HHhC
Q psy7645 166 ILSG 169 (418)
Q Consensus 166 ~ls~ 169 (418)
.+.+
T Consensus 336 ~~~~ 339 (344)
T PRK13917 336 LLKN 339 (344)
T ss_pred HHhc
Confidence 7654
No 36
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.09 E-value=0.0011 Score=59.35 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=40.8
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHH
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
++.|.++||.++.|.+.+++.+.|+ .++... +..++.|.|||+.|+.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~-~~V~~~-~~~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG-RPVVRP-EVEEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT-SEEEEE-SSSTHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC-CceEeC-CCCchHHHHHHHHHHh
Confidence 7999999999999999999999994 555444 4489999999999864
No 37
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.98 E-value=0.0029 Score=59.54 Aligned_cols=47 Identities=21% Similarity=0.254 Sum_probs=40.8
Q ss_pred ceEEEecCCCCcHHHHHHHHHHhcCCccc-ccCCchhhHHhhHHHHHHH
Q psy7645 119 HDVVLVGGSTRIPKVQSLLQNFFCGKSLN-LSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 119 ~~V~lvGGssriP~v~~~l~~~f~~~~~~-~~~~pdeaVA~GAa~~a~~ 166 (418)
..|+|+||.++.|.+.+.+++.++ .++. .+.+|..+-|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg-~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILG-IKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhC-CCceeCCCCccHHHHHHHHHHHHH
Confidence 469999999999999999999995 4554 4678999999999999864
No 38
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.87 E-value=0.0034 Score=58.46 Aligned_cols=67 Identities=25% Similarity=0.384 Sum_probs=51.7
Q ss_pred HHHHhHHHHhhHHHHHHHHHHcCCCccccc-eEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHH
Q psy7645 90 EELCSDLFRSTLQPVEKALQDAKLDKSAIH-DVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 90 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~-~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~ 162 (418)
++++..++..+...+.+.+...+ ++ .|+|.||.++.|.+.+.+.+.+ +.++..+.+|..+.|+|||+
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 34555555555555555554432 45 8999999999999999999999 56777888898999999997
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=96.83 E-value=0.003 Score=62.95 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhcC-------CcccccC-CchhhHHhhHHHHHHH
Q psy7645 99 STLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSI-NPDEAVAYGAAVQAAI 166 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~~-------~~~~~~~-~pdeaVA~GAa~~a~~ 166 (418)
.+.++|.+++..+..+. .-...|+|+||+|++|-+.++|.+.+.. .++.... +|..++=+||+++|..
T Consensus 290 gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 290 GLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp CHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 35677778877665332 2247999999999999999998876632 1223334 7889999999999863
No 40
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=96.74 E-value=0.0054 Score=56.96 Aligned_cols=46 Identities=20% Similarity=0.082 Sum_probs=38.0
Q ss_pred ceEEEecCCCCcHHHHHHHHHHhcCCc----ccccCCchhhHHhhHHHHH
Q psy7645 119 HDVVLVGGSTRIPKVQSLLQNFFCGKS----LNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 119 ~~V~lvGGssriP~v~~~l~~~f~~~~----~~~~~~pdeaVA~GAa~~a 164 (418)
+.|+|.||.++.|.+.+.+++.+++.. +..+.+|..+-|+|||++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 359999999999999999999885333 4445688899999999864
No 41
>PTZ00280 Actin-related protein 3; Provisional
Probab=96.60 E-value=0.0092 Score=59.96 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=70.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc-----------------eeEEEEeecc
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST-----------------EASIEIDALY 75 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~-----------------~~~i~i~~~~ 75 (418)
..+||.++|+.|.+++.++ +..+... ..+..++.+|+.++... ...+.+++..
T Consensus 190 ~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~ 259 (414)
T PTZ00280 190 IPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSV 259 (414)
T ss_pred ecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCC
Confidence 4789999999999987542 1122111 11234666777654211 0112222222
Q ss_pred CCceeEEEeCHHHHH---HHHhHHH------HhhHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 76 DGIDFYTKISRARFE---ELCSDLF------RSTLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 76 ~~~d~~~~itr~~fe---~l~~~~~------~~~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
.+....+.|..+.|. -+..|-+ ..+.++|.+++.++..+. .=.+.|+|+||+|.+|-+.++|.+.+.
T Consensus 260 ~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 260 TKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 234456788887774 2333421 134566777776654321 224789999999999999999988774
No 42
>PRK15027 xylulokinase; Provisional
Probab=96.59 E-value=0.0098 Score=61.05 Aligned_cols=82 Identities=18% Similarity=0.250 Sum_probs=57.1
Q ss_pred EeCHHHHHHHHhH-HHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 83 KISRARFEELCSD-LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 83 ~itr~~fe~l~~~-~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.-+|.+|-..+-. +.-.+...+ +.+++.+. .++.|.++||+++.+...+++.+.| +.++....+.+++.|+|||
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGM-DVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 3356665544333 222333333 34455554 3789999999999999999999999 5666555567778999999
Q ss_pred HHHHHHhC
Q psy7645 162 VQAAILSG 169 (418)
Q Consensus 162 ~~a~~ls~ 169 (418)
+.|+.-.+
T Consensus 430 ~lA~~~~G 437 (484)
T PRK15027 430 RLAQIAAN 437 (484)
T ss_pred HHHHHhcC
Confidence 99986554
No 43
>PLN02669 xylulokinase
Probab=96.54 E-value=0.0083 Score=62.51 Aligned_cols=71 Identities=13% Similarity=0.242 Sum_probs=49.9
Q ss_pred HhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHH
Q psy7645 93 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
++.+++-+.-.++..++..+.. ..++.|+++||+|+.|.+.+.+.+.|+ .++... +..++.|+|||+.|+.
T Consensus 422 ~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg-~pV~~~-~~~ea~alGAA~~A~~ 492 (556)
T PLN02669 422 VRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFG-CDVYTV-QRPDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcC-CCeEec-CCCCchHHHHHHHHHH
Confidence 3444444443344444443332 347899999999999999999999995 556444 4457889999999975
No 44
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=96.54 E-value=0.0024 Score=63.13 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhcCC-------cccccCCchhhHHhhHHHHHHH
Q psy7645 99 STLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~~~-------~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
.+.+.|.+++..+..+. .=.+.|+|+||+|++|-+.++|.+.+... .+..+.++..++=.||+++|..
T Consensus 271 ~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 271 GIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCc
Confidence 56677777777653221 22367999999999999999888766211 2233445667888888887743
No 45
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.47 E-value=0.0078 Score=59.02 Aligned_cols=46 Identities=28% Similarity=0.376 Sum_probs=41.9
Q ss_pred ceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHH
Q psy7645 119 HDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 119 ~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
+.|+|+||.++.|.+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 46999999999999999999999 46788899999999999999884
No 46
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.42 E-value=0.0094 Score=58.04 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=40.6
Q ss_pred ceEEEecCCCCcHHHHHHHHHHhc----CCcccccCCchhhHHhhHHHHH
Q psy7645 119 HDVVLVGGSTRIPKVQSLLQNFFC----GKSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 119 ~~V~lvGGssriP~v~~~l~~~f~----~~~~~~~~~pdeaVA~GAa~~a 164 (418)
..|+|+||.++.+.+.+.|++.++ +.++..+.+|..+-|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 589999999999999999999994 3456778899999999999875
No 47
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.33 E-value=0.013 Score=60.96 Aligned_cols=82 Identities=20% Similarity=0.235 Sum_probs=58.9
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHH---HHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKAL---QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l---~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
.-+|..+..++.-+++-+.-.++.++ ++.+. .++.|.++||.++.|...+++.+.+ +.++... +..++.|+|
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~alG 483 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIP-YVNEAVLHG 483 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHH-CCeeEec-ChhHHHHHH
Confidence 33566666666666665554444444 33343 4789999999999999999999999 5666555 445688999
Q ss_pred HHHHHHHHhC
Q psy7645 160 AAVQAAILSG 169 (418)
Q Consensus 160 Aa~~a~~ls~ 169 (418)
||+.|+.-.+
T Consensus 484 aA~lA~~~~G 493 (541)
T TIGR01315 484 AAMLGAKAAG 493 (541)
T ss_pred HHHHHHHhcC
Confidence 9999986554
No 48
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.19 E-value=0.02 Score=58.47 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=41.9
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
++.|.++||.++.|...+++.+.| +.++... +..++.++|||+.|+.-.+
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~-~~~e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANML-DIPVKVV-DDAETTVAGAAMFGFYGVG 443 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhc-CCeeEec-cCCcchHHHHHHHHHHhcC
Confidence 689999999999999999999999 4666544 4457889999999986554
No 49
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.96 E-value=0.033 Score=57.95 Aligned_cols=81 Identities=19% Similarity=0.290 Sum_probs=55.1
Q ss_pred EeCHHHHHHHHhH-HHHhhHHHHHHHHHHcCCCccccceEEEecCC-CCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 83 KISRARFEELCSD-LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 83 ~itr~~fe~l~~~-~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs-sriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
.-+|.++-..+-. +.-..... -+.|++.+. .++.|.++||. ++.+.+.+++.+.| +.++....+ .++.|.||
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~-l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~Ga 477 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMI-METFTDSGV---PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGA 477 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHH
Confidence 3456665444332 22233333 333444454 47999999999 99999999999999 466655544 57889999
Q ss_pred HHHHHHHhC
Q psy7645 161 AVQAAILSG 169 (418)
Q Consensus 161 a~~a~~ls~ 169 (418)
|+.|+.-.+
T Consensus 478 A~lA~~~~G 486 (536)
T TIGR01234 478 AIFAAVAAG 486 (536)
T ss_pred HHHHHHHcC
Confidence 999987655
No 50
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.93 E-value=0.026 Score=54.33 Aligned_cols=72 Identities=25% Similarity=0.333 Sum_probs=52.9
Q ss_pred HHHHhHHHHhhHHHH-HHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHH
Q psy7645 90 EELCSDLFRSTLQPV-EKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 90 e~l~~~~~~~~~~~i-~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
|+++.-+...+..-+ .++++.-.+. + -|+|+||.+..-.+.+++.+.+ +.++..+.+|..+-|+|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 455555544443322 2244443332 2 2999999999999999999999 578889999999999999999853
No 51
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.87 E-value=0.022 Score=58.68 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=42.1
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
++.|.++||.++.|...+++.+.| +.++.. ....++.|+|||+.|+.-.+
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~~~~e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL-GVPVER-PVVAETTALGAAYLAGLAVG 453 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh-CCeeEe-cCcccchHHHHHHHHhhhcC
Confidence 789999999999999999999999 466643 45567999999999976554
No 52
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.79 E-value=0.021 Score=58.71 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=42.7
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||.+|.|...+++.+.| +.++.. .+..++.|+|||+.|+.-.+
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~-~~~~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVR-PKVTETTALGAAYAAGLAVG 449 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEe-cCCCcchHHHHHHHHHhhcC
Confidence 3789999999999999999999999 466644 45568889999999976554
No 53
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.76 E-value=0.032 Score=57.10 Aligned_cols=51 Identities=31% Similarity=0.599 Sum_probs=43.1
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||.++.+.+.+++.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWALG 440 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhcC
Confidence 3799999999999999999999999 4666444 5667999999999987655
No 54
>PRK04123 ribulokinase; Provisional
Probab=95.64 E-value=0.03 Score=58.42 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=42.3
Q ss_pred ccceEEEecCC-CCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGS-TRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGs-sriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||. |+.+...+++.+.| +.++.. ..+.|+.|+|||+.|+.-.+
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~-~~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQV-VASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEe-cCccccchHHHHHHHHHHhc
Confidence 37899999999 99999999999999 455543 45568999999999986544
No 55
>PRK10331 L-fuculokinase; Provisional
Probab=95.63 E-value=0.052 Score=55.47 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=42.4
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||.++.|...+++.+.| +.++... ...+++|+|||+.|+.-.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~-~~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANML-DIPIKVL-DDAETTVAGAAMFGWYGVG 439 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhc-CCeeEec-CcccchHHHHHHHHHHhcC
Confidence 4789999999999999999999999 4666444 4557899999999986544
No 56
>PTZ00452 actin; Provisional
Probab=95.62 E-value=0.029 Score=55.50 Aligned_cols=137 Identities=20% Similarity=0.283 Sum_probs=76.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc----------------eeEEEEeeccC
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST----------------EASIEIDALYD 76 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~----------------~~~i~i~~~~~ 76 (418)
..+||.++++.|.+.+.++ +..+... .. +..++.+|+.++... ...+. +.+
T Consensus 178 ~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~---LPD 244 (375)
T PTZ00452 178 INLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYK---LPD 244 (375)
T ss_pred eeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEE---CCC
Confidence 4799999999988876432 2222211 11 112444555543111 01122 234
Q ss_pred CceeEEEeCHHHHHHHHhHHHH---------hhHHHHHHHHHHcCCC--ccccceEEEecCCCCcHHHHHHHHHHhcCC-
Q psy7645 77 GIDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLD--KSAIHDVVLVGGSTRIPKVQSLLQNFFCGK- 144 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~--~~~i~~V~lvGGssriP~v~~~l~~~f~~~- 144 (418)
|. .+++..+.| .+.+.+|+ -+.+++.+++..+... ..=...|+|+||+|.+|-+.++|.+.+...
T Consensus 245 g~--~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~ 321 (375)
T PTZ00452 245 GN--ILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLV 321 (375)
T ss_pred CC--EEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhC
Confidence 44 456667666 23333333 2345666666655322 222469999999999999998887665311
Q ss_pred ------cccccCCchhhHHhhHHHHHH
Q psy7645 145 ------SLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 145 ------~~~~~~~pdeaVA~GAa~~a~ 165 (418)
++..+.++..++=+||+++|.
T Consensus 322 p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 322 PSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred CCCceeEEecCCCcceeEEECchhhcC
Confidence 122334555677889988875
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=95.61 E-value=0.059 Score=50.89 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=42.0
Q ss_pred ccceEEEec-CCCCcHHHHHHHHHHhc--CCcccccCCchhhHHhhHHHHHH
Q psy7645 117 AIHDVVLVG-GSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 117 ~i~~V~lvG-GssriP~v~~~l~~~f~--~~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
.+..|+++| |.++.|.+++.+.+.+. +.++..+.||..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 79999999999998873 35677788999999999999875
No 58
>PLN02295 glycerol kinase
Probab=95.58 E-value=0.054 Score=55.99 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=42.6
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||+++.|...+++.+.| +.++. ..+..|+.|+|||+.|+.-.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~-~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVV-RPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceE-ecCccccHHHHHHHHHHhhcC
Confidence 4789999999999999999999999 46664 445568999999999976554
No 59
>KOG2517|consensus
Probab=95.52 E-value=0.047 Score=55.22 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=55.5
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
+-+.-++..+|+.+-++.+ ..|+.+.+.||.|+.|.+-+.+.+.+| .++.++.++|. |+.|||+.|+..++
T Consensus 394 eai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g-~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 394 EAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILG-LPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhC-CccccccchhH-HHHHHHHHHHhhcC
Confidence 3344455555555444443 458889999999999999999999995 77888888877 99999999998776
No 60
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.51 E-value=0.041 Score=56.80 Aligned_cols=50 Identities=24% Similarity=0.401 Sum_probs=42.1
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
++.|.++||.++.+...+++.+.| +.++... ...++.|+|||+.|+.-.+
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~-~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-GKDIVVP-EMAETTALGAALLAGLAVG 456 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-CCceEec-CcccchHHHHHHHHHhhcC
Confidence 789999999999999999999999 4566444 4667899999999986555
No 61
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=95.42 E-value=0.067 Score=54.46 Aligned_cols=50 Identities=20% Similarity=0.218 Sum_probs=41.6
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||+++.++..+++.+.+ +.++.. . +.++.|+|||+.|+.-.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~-~-~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIA-G-PVEASTLGNIGVQLMALD 436 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEc-C-CchHHHHHHHHHHHHhcC
Confidence 3789999999999999999999999 466643 2 367999999999986554
No 62
>PTZ00281 actin; Provisional
Probab=95.36 E-value=0.02 Score=56.75 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=78.4
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCc--------------eeEEEEeeccCC
Q psy7645 12 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSST--------------EASIEIDALYDG 77 (418)
Q Consensus 12 d~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~--------------~~~i~i~~~~~~ 77 (418)
...+||.++++.|.+.+..+ +..+.. ... ...++.+|+.+..-. ...... .+.+|
T Consensus 178 ~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y-~LPdg 246 (376)
T PTZ00281 178 RLDLAGRDLTDYMMKILTER-----GYSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKSY-ELPDG 246 (376)
T ss_pred eccCcHHHHHHHHHHHHHhc-----CCCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhcCcccceeE-ECCCC
Confidence 35799999999998877542 122211 111 123556666643111 000111 12234
Q ss_pred ceeEEEeCHHHHHHHHhHHHH---------hhHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhcCC--
Q psy7645 78 IDFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFCGK-- 144 (418)
Q Consensus 78 ~d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~~~-- 144 (418)
. .++|..+.| .+.+.+|+ -+.+.|.+++..+..+. .-.+.|+|+||+|.+|-+.++|...+...
T Consensus 247 ~--~i~i~~er~-~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p 323 (376)
T PTZ00281 247 Q--VITIGNERF-RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAP 323 (376)
T ss_pred C--EEEeeHHHe-eCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCC
Confidence 3 345565555 22233332 34566666666553221 22468999999999999998887665311
Q ss_pred -----cccccCCchhhHHhhHHHHHH
Q psy7645 145 -----SLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 145 -----~~~~~~~pdeaVA~GAa~~a~ 165 (418)
++..+.++..++=+||+++|.
T Consensus 324 ~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 324 STMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred CCcceEEecCCCCceeEEECcccccC
Confidence 123344667788899998885
No 63
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=95.29 E-value=0.045 Score=53.53 Aligned_cols=50 Identities=12% Similarity=0.238 Sum_probs=37.4
Q ss_pred HhHHHHhhHHHHHHHHHHc--CCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 93 CSDLFRSTLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
+++.++++..-|.+.+.-. ......++.|+|+||++++|.+.+.+.+.|+
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 4456666666666666432 2233458999999999999999999999995
No 64
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=95.25 E-value=0.07 Score=55.08 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=42.3
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||.++.+...+++.+.| +.++... +..++.|+|||+.|+.-.+
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~-~~~e~~a~GaA~la~~~~G 451 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVP-ESYESSCLGACILGLKALG 451 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEec-CCCCcchHHHHHHHHHhcC
Confidence 4799999999999999999999999 4666544 3457899999999976544
No 65
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.16 E-value=0.092 Score=54.43 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=42.2
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||.++.|...+++.+.| +.++.... ..++.++|||+.|+.-.+
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~alGaA~lA~~~~G 459 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPV-VKEATALGCAIAAGVGAG 459 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEec-ccCchHHHHHHHHHHHhC
Confidence 3789999999999999999999999 56665444 456889999999976554
No 66
>KOG2531|consensus
Probab=95.15 E-value=0.074 Score=52.34 Aligned_cols=56 Identities=18% Similarity=0.368 Sum_probs=46.2
Q ss_pred HHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHH
Q psy7645 109 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 109 ~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
+..+.....-+.|+.|||.||...|-+.|.+.|+ .++ ..++..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~-apV-y~~~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFG-APV-YTIEGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhC-CCe-EeecCCchhhHHHHHHHHH
Confidence 3446666667999999999999999999999994 444 4458889999999999864
No 67
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.13 E-value=0.09 Score=53.77 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=41.3
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.++.|.++||++|.|...+++.+.+ +.++... . .++.|+|||+.|+.-.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~-~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAG-P-VEASTLGNIGIQLMTLD 424 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeC-C-hhHHHHHHHHHHHHHcC
Confidence 3789999999999999999999999 4666433 3 47999999999876554
No 68
>PTZ00466 actin-like protein; Provisional
Probab=94.96 E-value=0.063 Score=53.27 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=77.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC-------------ceeEEEEeeccCCc
Q psy7645 12 DTHLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS-------------TEASIEIDALYDGI 78 (418)
Q Consensus 12 d~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~-------------~~~~i~i~~~~~~~ 78 (418)
...+||.++++.|.+.+.+. +...... .-+..++.+|+.+..- ....... .+.+|.
T Consensus 183 ~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y-~LPdg~ 251 (380)
T PTZ00466 183 RTDVAGRDITTYLGYLLRKN-----GHLFNTS-----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY-ILPDGS 251 (380)
T ss_pred EecCchhHHHHHHHHHHHhc-----CCCCCcH-----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeE-ECCCCc
Confidence 35899999999998876431 1111111 1122345555554210 0001111 122443
Q ss_pred eeEEEeCHHHHHHHHhHHHH---------hhHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhcCC---
Q psy7645 79 DFYTKISRARFEELCSDLFR---------STLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFCGK--- 144 (418)
Q Consensus 79 d~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~~~--- 144 (418)
.+.|..+.|. +.+.+|+ -+.+.|-+.+..+..+. .-...|+|+||+|.+|-+.++|...+...
T Consensus 252 --~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 252 --QILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred --EEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 3556666662 3333333 23466666666653321 22478999999999999999888766321
Q ss_pred ----cccccCCchhhHHhhHHHHHH
Q psy7645 145 ----SLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 145 ----~~~~~~~pdeaVA~GAa~~a~ 165 (418)
.+....++..++=+||+++|.
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcC
Confidence 122334556677889988875
No 69
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=94.43 E-value=0.1 Score=50.40 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=38.6
Q ss_pred cccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHH
Q psy7645 116 SAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 116 ~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a 164 (418)
.+++.|+|+||++. ++++.|++.|+...+....||..|.|+|-..++
T Consensus 272 ~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 272 ESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred CcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 45899999999987 678999999976555556789999999987765
No 70
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=94.32 E-value=0.39 Score=48.64 Aligned_cols=62 Identities=24% Similarity=0.418 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 103 PVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 103 ~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
.|-+++++.|+. |+.|.+.||-.+.|.+.+.+.+..| .++..+ ..++++++|+|++|+.-.+
T Consensus 420 ~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg-~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 420 AIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTG-RPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcC-CeEEee-cccchhhhHHHHHHHHHhc
Confidence 344556666655 8999999999999999999999995 444433 6789999999999986554
No 71
>PTZ00004 actin-2; Provisional
Probab=94.28 E-value=0.053 Score=53.76 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC---------------c--eeEEEEeecc
Q psy7645 13 THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS---------------T--EASIEIDALY 75 (418)
Q Consensus 13 ~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~---------------~--~~~i~i~~~~ 75 (418)
..+||.++++.|.+.+..+ +..+... . -...++.+|+.+... . ...+. +.
T Consensus 179 ~~~GG~~lt~~L~~lL~~~-----~~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lP 245 (378)
T PTZ00004 179 LDVAGRDLTEYMMKILHER-----GTTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYE---LP 245 (378)
T ss_pred ecccHHHHHHHHHHHHHhc-----CCCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEE---CC
Confidence 4799999999999887532 1112111 1 112244555543211 0 11122 23
Q ss_pred CCceeEEEeCHHHH---HHHHhHH------HHhhHHHHHHHHHHcCCC--ccccceEEEecCCCCcHHHHHHHHHHhcCC
Q psy7645 76 DGIDFYTKISRARF---EELCSDL------FRSTLQPVEKALQDAKLD--KSAIHDVVLVGGSTRIPKVQSLLQNFFCGK 144 (418)
Q Consensus 76 ~~~d~~~~itr~~f---e~l~~~~------~~~~~~~i~~~l~~~~~~--~~~i~~V~lvGGssriP~v~~~l~~~f~~~ 144 (418)
+|. .+.|..+.| |-+..|- ..-+.++|.+++..+..+ +.-...|+|+||+|.+|-+.++|...+...
T Consensus 246 dg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~ 323 (378)
T PTZ00004 246 DGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTL 323 (378)
T ss_pred CCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHh
Confidence 444 345566555 2333432 123456666666665422 122478999999999999998887766311
Q ss_pred -------cccccCCchhhHHhhHHHHHH
Q psy7645 145 -------SLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 145 -------~~~~~~~pdeaVA~GAa~~a~ 165 (418)
++..+.++..++=+||+++|.
T Consensus 324 ~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 324 APSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred CCCCccEEEecCCCCceeEEECcccccC
Confidence 123344566777888888774
No 72
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.10 E-value=0.27 Score=50.74 Aligned_cols=81 Identities=23% Similarity=0.205 Sum_probs=50.8
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHHHHc-CCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKALQDA-KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.-+|.+|-+.+-.-+.-.....-+.|.+. +.. ++.|.++||++|.++..+++.+.|+ .++..+ ...|+.+.|+|
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~---~~~i~~~GGgars~~w~Qi~Ad~~g-~~v~~~-~~~e~~a~g~A 443 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGKP---PSRVRVVGGGARSPLWLQILADALG-LPVVVP-EVEEAGALGGA 443 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccEEEEECCcccCHHHHHHHHHHcC-CeeEec-CcccchHHHHH
Confidence 34666655444333333333333444444 433 5799999999999999999999994 555433 44566666666
Q ss_pred HHHHHHh
Q psy7645 162 VQAAILS 168 (418)
Q Consensus 162 ~~a~~ls 168 (418)
+.++.-.
T Consensus 444 ~~~~~~~ 450 (502)
T COG1070 444 ALAAAAL 450 (502)
T ss_pred HHHHHHh
Confidence 6665444
No 73
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=91.80 E-value=0.35 Score=42.64 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=52.7
Q ss_pred HHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHH
Q psy7645 92 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 92 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~ 162 (418)
.+.|++++..+++++-++..+ |..+.|+||+|.-|-+.+..++.| .-++..+..|-..--.|-|+
T Consensus 206 ~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred chhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccccccCCCcceechhhhhh
Confidence 356888888888888887765 678999999999999999999999 56777777777666666664
No 74
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=91.75 E-value=0.72 Score=43.35 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHH----HHHhcCCcccccCCchhhHHhhHHHHH
Q psy7645 101 LQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL----QNFFCGKSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 101 ~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l----~~~f~~~~~~~~~~pdeaVA~GAa~~a 164 (418)
...+..++....... ..|+|+||..+.+.+.+.+ .+..+..++.....|....|.|||++|
T Consensus 207 a~~i~~~~~~~~~~~---~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 207 AELIKAVLKRLGPEK---EPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHTCTCCC---CSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC---CeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344444444443322 1299999999997776666 333433344567789999999999986
No 75
>KOG0681|consensus
Probab=91.67 E-value=0.21 Score=50.18 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=41.1
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcC-------CcccccCCchhhHHhhHHHHHHH
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~-------~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
+..|+|+||+|.+|.+.+.|...+-. ..+....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 78999999999999999999876632 24566779999999999998864
No 76
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=91.65 E-value=0.58 Score=45.20 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc--CCcccccCCchhhHHhhHH
Q psy7645 87 ARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 87 ~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~--~~~~~~~~~pdeaVA~GAa 161 (418)
+++.++++..+.++.+-|.+.+.+ ..+++.|+||||++ .++.+.|++.|+ ...+...-||..|-|+|-+
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 344455555555555544444432 34689999999997 567889999985 2356667799999999854
No 77
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=90.10 E-value=1.9 Score=47.14 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=62.3
Q ss_pred eeEEEeCHHHHHHHHh---HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCC-----------
Q psy7645 79 DFYTKISRARFEELCS---DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK----------- 144 (418)
Q Consensus 79 d~~~~itr~~fe~l~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~----------- 144 (418)
++.+.|+..++...+. -.+.+++..+-+++...+ -|-++|+|=.||+|.|+..++...+-.
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 4567888888888664 455556655556665544 589999999999999999999987421
Q ss_pred --------cccccCCchhhHHhhHHHHHHHHh
Q psy7645 145 --------SLNLSINPDEAVAYGAAVQAAILS 168 (418)
Q Consensus 145 --------~~~~~~~pdeaVA~GAa~~a~~ls 168 (418)
+..+--||...||.||.+++....
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 112334899999999998775443
No 78
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.56 E-value=4.1 Score=38.53 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=39.1
Q ss_pred cceEEEecC--CCCcH-HHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGG--STRIP-KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGG--ssriP-~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
...|+|.|- ++|+| .+++.|++.|. .++ ..+.. ++.|+|+|+.|.-+.+
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V-~~L~~-ksAA~G~AiIA~dI~g 314 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLS-CKV-LVLDS-ESAAIGLALIAEDIFS 314 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhC-CCe-EEecc-hhhhhhHHHHHHHHhC
Confidence 458999986 99999 99999999994 333 33444 8999999999976655
No 79
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=86.53 E-value=2.4 Score=42.49 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=53.4
Q ss_pred HHHhHHHHhhH----HHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHH
Q psy7645 91 ELCSDLFRSTL----QPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 91 ~l~~~~~~~~~----~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ 166 (418)
.+++..++.+. ++++.+-++++. .+..+-+=||.|+..++-+...+.+ +.++.++.+ .|.-|+|||+.|..
T Consensus 375 hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~lAGl 449 (499)
T COG0554 375 HIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAYLAGL 449 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHHHHhh
Confidence 34444444444 444444444444 5788999999999999999999999 466766644 68899999999987
Q ss_pred HhC
Q psy7645 167 LSG 169 (418)
Q Consensus 167 ls~ 169 (418)
-.+
T Consensus 450 a~G 452 (499)
T COG0554 450 AVG 452 (499)
T ss_pred hhC
Confidence 655
No 80
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=85.79 E-value=3.1 Score=40.91 Aligned_cols=72 Identities=25% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccc----cCCchhhHHhhHHHHHHH
Q psy7645 92 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL----SINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 92 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~----~~~pdeaVA~GAa~~a~~ 166 (418)
+.+-+.+=+...|.+.++.... +++.|++.||+.+-|.+-+.|++.+++..+.. .++|+.-=|.+-|++|..
T Consensus 262 ~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~~ 337 (364)
T PF03702_consen 262 ILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAYR 337 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHHH
Confidence 3333444444555555555432 27899999999999999999999997644422 244553334444666654
No 81
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.34 E-value=10 Score=30.89 Aligned_cols=56 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Q psy7645 347 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGD 406 (418)
Q Consensus 347 ~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~ 406 (418)
+=..++..+...+++-.+.++. ....++.+.+.|++.+......+.+...+|.|||
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~ 119 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLSKYYPQG 119 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445667777777777777763 5677888888888888888888887755555554
No 82
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=85.17 E-value=1.6 Score=41.11 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=38.4
Q ss_pred cccceEEEecC-CCCcHHHHHHHHHHhc--CCcccccCCchhhHHhhHHH
Q psy7645 116 SAIHDVVLVGG-STRIPKVQSLLQNFFC--GKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 116 ~~i~~V~lvGG-ssriP~v~~~l~~~f~--~~~~~~~~~pdeaVA~GAa~ 162 (418)
..+..|+++|| -+..|.+++.+...+. ..++..+-|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 6778999999987763 34566777889999999986
No 83
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=83.50 E-value=6.9 Score=38.47 Aligned_cols=83 Identities=19% Similarity=0.142 Sum_probs=58.5
Q ss_pred EEeCHHHHHHHHhHHHHhhH-HHHHHHHHHcCCCccccce-EEEecCCCCcHHHHHHHHHHhcCCccc-ccCCchhhHHh
Q psy7645 82 TKISRARFEELCSDLFRSTL-QPVEKALQDAKLDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCGKSLN-LSINPDEAVAY 158 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-V~lvGGssriP~v~~~l~~~f~~~~~~-~~~~pdeaVA~ 158 (418)
..-.+.++-..++..+++++ ..++.+++..+ ++. +.|.||....-..-..|.+..+-..+. .+.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45677788888888887764 66777777776 456 999999998888888888774333443 34556899999
Q ss_pred hHHHHHHHHhC
Q psy7645 159 GAAVQAAILSG 169 (418)
Q Consensus 159 GAa~~a~~ls~ 169 (418)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986554
No 84
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=81.58 E-value=1.6 Score=40.67 Aligned_cols=50 Identities=26% Similarity=0.295 Sum_probs=37.1
Q ss_pred CccccceEEEecCCCCcHHHHHHHHHHhcCC-------cccccCCchhhHHhhHHHH
Q psy7645 114 DKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK-------SLNLSINPDEAVAYGAAVQ 163 (418)
Q Consensus 114 ~~~~i~~V~lvGGssriP~v~~~l~~~f~~~-------~~~~~~~pdeaVA~GAa~~ 163 (418)
+..+|+.|+|||||+.=.=|-+++.+.+..- .+.-..-|..|||.|.++.
T Consensus 272 niR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvls 328 (332)
T PF08841_consen 272 NIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLS 328 (332)
T ss_dssp SCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHH
T ss_pred CcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHh
Confidence 3367999999999999888888888887422 3444567899999999863
No 85
>PRK00976 hypothetical protein; Provisional
Probab=81.05 E-value=7.3 Score=37.51 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=38.5
Q ss_pred ccceEEEecCCCCcH--HHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 117 AIHDVVLVGGSTRIP--KVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 117 ~i~~V~lvGGssriP--~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
+.+.|+|-||-|+.+ .+.+.+++.+.. . ...-...|.++|||+.|..+.+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~-~--~a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDK-K--VLVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhcc-c--ccccCCchHHHHHHHHHHHHhC
Confidence 468999999999998 788888888732 2 2233458999999998876644
No 86
>KOG0676|consensus
Probab=79.32 E-value=4.3 Score=39.81 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=22.9
Q ss_pred CccccceEEEecCCCCcHHHHHHHHHHh
Q psy7645 114 DKSAIHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 114 ~~~~i~~V~lvGGssriP~v~~~l~~~f 141 (418)
.+.-...|+|+||+|.+|.+.+.+.+..
T Consensus 287 rk~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 287 RKDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred hHHHHhheEEeCCcccchhHHHHHHHHH
Confidence 3334579999999999999999887765
No 87
>PRK03011 butyrate kinase; Provisional
Probab=78.62 E-value=3.8 Score=40.23 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=35.8
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhc---CCcccccCCchhhHHhhHHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFC---GKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~---~~~~~~~~~pdeaVA~GAa~ 162 (418)
++|.|+|.||.+..+.+.+.|.+.+. ...+....+-++|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999988887663 22344455667899999874
No 88
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=78.31 E-value=8.1 Score=37.39 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=38.3
Q ss_pred cccceEEEecCCCCcHHHHHHHHHHhcCCc--ccccCCc----hhhHHhhHHHHHHHHhC
Q psy7645 116 SAIHDVVLVGGSTRIPKVQSLLQNFFCGKS--LNLSINP----DEAVAYGAAVQAAILSG 169 (418)
Q Consensus 116 ~~i~~V~lvGGssriP~v~~~l~~~f~~~~--~~~~~~p----deaVA~GAa~~a~~ls~ 169 (418)
.+.+.|+|.|-.+|+|-+.+.+.+.|...- ....+.+ -...|.|||+.|.-+.+
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhc
Confidence 467899999999999999888877773210 1112222 24589999999977765
No 89
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=78.05 E-value=3.3 Score=41.84 Aligned_cols=48 Identities=27% Similarity=0.407 Sum_probs=38.7
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcC-------CcccccCCchhhHHhhHHHHHH
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCG-------KSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~-------~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
...|+|+||+|.+|.+.++|.+.+.. ..+..+.+|...+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 57999999999999999888877632 1344566888999999999886
No 90
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=76.36 E-value=15 Score=36.03 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccc----cCCchhhHHhhHHHHHHH
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNL----SINPDEAVAYGAAVQAAI 166 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~----~~~pdeaVA~GAa~~a~~ 166 (418)
+...|.+.+.... ...+.|++.||+++.|.+-+.|++.++ ..+.. .+++|--=|..-|++|..
T Consensus 272 TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 272 TAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 3344445554332 224689999999999999999999995 33321 245554444445666653
No 91
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=76.00 E-value=5.6 Score=42.80 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=37.5
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcC--Cccccc---CCchhhHHhhHHHHHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCG--KSLNLS---INPDEAVAYGAAVQAA 165 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~--~~~~~~---~~pdeaVA~GAa~~a~ 165 (418)
.++.|+|.||..+...+++.|.+.+.. .++..+ .--|.++++|.|+.|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 368899999999999999999887742 222222 3458999999988773
No 92
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=74.51 E-value=11 Score=36.10 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=42.8
Q ss_pred HhHHHHhhHHHHHHHHHHc--CCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhH
Q psy7645 93 CSDLFRSTLQPVEKALQDA--KLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGA 160 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GA 160 (418)
..|+++.+.+-|++.|.-. .-...+|+.++|.||+.++--+.+.+.+..+ . ...-.||-..-+.++
T Consensus 261 l~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~-~-~t~vanPf~~~~~~~ 328 (354)
T COG4972 261 LRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS-I-PTEVANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC-C-CeEeeCHHHHHhhhh
Confidence 3445555555555555431 2244679999999999999999999999984 2 233456644433333
No 93
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=66.77 E-value=8.8 Score=31.00 Aligned_cols=46 Identities=17% Similarity=0.258 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCcHH--HHHHHHHHhcCC
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK--VQSLLQNFFCGK 144 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~--v~~~l~~~f~~~ 144 (418)
.....++++|+++++++++|+.|..-|-++..-- =.+.|.+.|+..
T Consensus 26 ~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~~ 73 (119)
T PF02801_consen 26 ALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGDS 73 (119)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhccc
Confidence 4466799999999999999999999998877633 334688888643
No 94
>PRK09604 UGMP family protein; Validated
Probab=66.34 E-value=13 Score=36.02 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcC--Cccccc---CCchhhHHhhHHHHHHHHhC
Q psy7645 102 QPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCG--KSLNLS---INPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 102 ~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~--~~~~~~---~~pdeaVA~GAa~~a~~ls~ 169 (418)
+.++++++.. .++.|+|.||.....++++.|.+.+.. ..+..+ ..-|.++++|+|-+-....+
T Consensus 244 ~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 244 IKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 4444444433 468899999999999999999988732 123222 24589999999855444433
No 95
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=66.13 E-value=18 Score=36.17 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=49.8
Q ss_pred ceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHH-HHhcCCcccccCCchhhH
Q psy7645 78 IDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQ-NFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 78 ~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~-~~f~~~~~~~~~~pdeaV 156 (418)
..-.+.||..+.+++-. --.-+..-++-+|++++++++||+.|+|.||..+-=-+++.+. ..+|.....+-.-.-.++
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~a 367 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAA 367 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHH
Confidence 34467899999987532 2223445677889999999999999999999998888888775 444432211111122355
Q ss_pred HhhHHHHH
Q psy7645 157 AYGAAVQA 164 (418)
Q Consensus 157 A~GAa~~a 164 (418)
-.||.+..
T Consensus 368 l~GA~~~L 375 (412)
T PF14574_consen 368 LAGARMAL 375 (412)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 56666543
No 96
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=65.81 E-value=12 Score=36.14 Aligned_cols=56 Identities=18% Similarity=0.314 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCC--ccccc---CCchhhHHhhHHH
Q psy7645 102 QPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGK--SLNLS---INPDEAVAYGAAV 162 (418)
Q Consensus 102 ~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~--~~~~~---~~pdeaVA~GAa~ 162 (418)
+.++++++.. .++.|+|.||.....++++.|.+..... .+..+ ..-|.++++|+|=
T Consensus 249 ~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 249 EKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred HHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 4444444433 3678999999999999999998887321 22222 2458899999874
No 97
>PLN02377 3-ketoacyl-CoA synthase
Probab=63.83 E-value=27 Score=35.94 Aligned_cols=72 Identities=10% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHhHHHHhhHHHHHHHHHHcCCCccccceEEE-ecCCCCcHHHHHHHHHHhcCC-c-ccccCCchhhHHhhHHH
Q psy7645 91 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVL-VGGSTRIPKVQSLLQNFFCGK-S-LNLSINPDEAVAYGAAV 162 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~l-vGGssriP~v~~~l~~~f~~~-~-~~~~~~pdeaVA~GAa~ 162 (418)
...+....-+...++++|++++++++|||.|+. +.+....|.+.-+|.+.+|-. . ....++..-|.+.-.++
T Consensus 167 ~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL 241 (502)
T PLN02377 167 AAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAV 241 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHH
Confidence 333334444567889999999999999999977 334445799999999999632 1 23344443444433333
No 98
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=59.37 E-value=36 Score=33.01 Aligned_cols=52 Identities=17% Similarity=0.432 Sum_probs=38.0
Q ss_pred CHHHHHHHHhH----HHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHh
Q psy7645 85 SRARFEELCSD----LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 85 tr~~fe~l~~~----~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f 141 (418)
..++.+++|.. .++-+.+.++++++..+ .+.++++||-+..-.+|+++.+..
T Consensus 230 ~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 230 NEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 34444555554 44555666777777766 567999999999999999998866
No 99
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=58.43 E-value=35 Score=29.80 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHHH
Q psy7645 330 EAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNTL--ADKEEYQDKLQQLQKSCMPLMS 393 (418)
Q Consensus 330 E~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~~--a~~~e~~~kl~~L~~~~~~i~~ 393 (418)
++|+.+++..|. .++++|++.+ ++.+++++++... .+.++..++|-.-+++...+..
T Consensus 4 ~efL~~L~~~L~----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLK----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 456777777774 4777776554 6677778876432 4667777777666777666664
No 100
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=57.79 E-value=47 Score=35.05 Aligned_cols=52 Identities=25% Similarity=0.310 Sum_probs=39.8
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCC-------------------cccccCCchhhHHhhHHHHHHHHh
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGK-------------------SLNLSINPDEAVAYGAAVQAAILS 168 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~-------------------~~~~~~~pdeaVA~GAa~~a~~ls 168 (418)
+-|-++|+|-.||+|.|+..++...+-. +..+--||...+|.||.+++..+.
T Consensus 778 ~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 778 DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceeccceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 3588999999999999999998876411 112234899999999998886543
No 101
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=57.12 E-value=1.2e+02 Score=25.54 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhc-C--CC----CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCC
Q psy7645 345 NKLTESEKSRCREECDATLKWLDN-N--TL----ADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTVEEV 417 (418)
Q Consensus 345 ~~~~~~e~~~i~~~l~~~~~WL~~-~--~~----a~~~e~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~ 417 (418)
..+++.++..++.++.+++=+++- | +. -+.++|....+.|-.. ..+..| -.+ .|||+||||
T Consensus 72 e~ls~~eqee~k~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~eALm~~-e~v~vk--~~~---------~~~~~ve~v 139 (162)
T PF12207_consen 72 EKLSKEEQEEYKKLTMELQPYFDKLNGHKSSKEVLTQEEYDQYIEALMTY-ETVRVK--TKS---------SGGITVEEV 139 (162)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTT---HHHHS-HHHHHHHHHHHHHH-HHHHHH--CT----------SS---GGGS
T ss_pred HhCCHHHHHHHHHHHHhcchHHHHhcCCcchhhhcCHHHHHHHHHHHhhh-heeeee--ccC---------CCCCcHHhc
Confidence 568999999999999999988873 2 22 2677888777776532 223333 334 677999987
No 102
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=56.98 E-value=30 Score=35.93 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=37.9
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhc--CCccccc---CCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFC--GKSLNLS---INPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~--~~~~~~~---~~pdeaVA~GAa~~a~~ls~ 169 (418)
+..|+|.||.....++++.|.+.+. +..+..+ ...|.++++|+|.+....++
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 6789999999999999999986652 1223222 24589999999976655544
No 103
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=56.60 E-value=22 Score=33.54 Aligned_cols=48 Identities=25% Similarity=0.201 Sum_probs=30.8
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCC------cccccCCchhhHHhhHHHHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGK------SLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~------~~~~~~~pdeaVA~GAa~~a 164 (418)
+.+.|+|-|+.+..+.+-+.+++.+... .+..+...+.+.+.|||.++
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 3578888888776665556666555321 12333345788899999876
No 104
>KOG0797|consensus
Probab=55.83 E-value=5.2 Score=40.36 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=40.4
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcC-----C---------cccccCCchhhHHhhHHHHHHHHhC
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCG-----K---------SLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~-----~---------~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
-+.|++|||+...|.+.+.|++..-. . ..-+..||...+=+|||++|..-..
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~~ 592 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDFV 592 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHHH
Confidence 57999999999999999999877632 1 1123478888999999999976543
No 105
>KOG2708|consensus
Probab=55.57 E-value=65 Score=29.37 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=78.2
Q ss_pred EEEEEEcCC-CCCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeE-
Q psy7645 4 FEVRSTAGD-THLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFY- 81 (418)
Q Consensus 4 ~~V~a~~gd-~~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~- 81 (418)
-.|+|.+-. -.+=|+.+|-++-+ .+.+|.+-.++. .+|-.-..+.+.|.+.|. .|.++....|.|.+
T Consensus 136 TQvIAYse~rYrIFGETlDIAvGN-ClDRFAR~lkls--N~PsPGynieq~AK~gk~--------~ieLPY~VKGMDvSf 204 (336)
T KOG2708|consen 136 TQVIAYSEKRYRIFGETLDIAVGN-CLDRFARVLKLS--NDPSPGYNIEQLAKKGKN--------YIELPYTVKGMDVSF 204 (336)
T ss_pred eEEEEEccceeeeecceehhhhhh-hHHHHHHHhcCC--CCCCCCcCHHHHHHhccc--------eeecceeeeccccch
Confidence 345554432 24668888888765 345565544332 111111223333444433 23333333343332
Q ss_pred ------------------EEeCHHHH-HHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 82 ------------------TKISRARF-EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 82 ------------------~~itr~~f-e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
.++|.+++ .+|-+.+|.-+.++.++++...+ -+.|++|||-.---.+|++......
T Consensus 205 SGiLs~ie~~a~~~~~~~~~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~ 279 (336)
T KOG2708|consen 205 SGILSYIEDLAEELLKPSSEVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCS 279 (336)
T ss_pred HHHHHHHHHHHhhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHH
Confidence 23344333 23334456666777788887765 3689999999999999999887763
Q ss_pred CC-cccccCCchhhHHhhHHH
Q psy7645 143 GK-SLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 143 ~~-~~~~~~~pdeaVA~GAa~ 162 (418)
.. ......|-..|+--|+.+
T Consensus 280 eRgg~~faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 280 ERGGKLFATDERFCIDNGVMI 300 (336)
T ss_pred hcCCceEecccceeeeCchHH
Confidence 21 112333555677777665
No 106
>PLN03173 chalcone synthase; Provisional
Probab=55.55 E-value=55 Score=32.59 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=39.1
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCC-CcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST-RIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss-riP~v~~~l~~~f~ 142 (418)
.-.+-..+.++++|+++++++++||.|+.+..+. ..|.+--.|.+.+|
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3344456778999999999999999999887544 58999999999985
No 107
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=54.61 E-value=23 Score=33.84 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=29.7
Q ss_pred ccceEEEecCCCCc-HHHHHHHHHHhcC---------CcccccCCchhhHHhhHHHHHH
Q psy7645 117 AIHDVVLVGGSTRI-PKVQSLLQNFFCG---------KSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 117 ~i~~V~lvGGssri-P~v~~~l~~~f~~---------~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
+.+.|+|-|+.+.. |.+.+.+++.+.. .++..+.-.+.++++|||..+.
T Consensus 251 dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 251 NPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred CCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 45788888776664 4555555544421 1223344456789999998764
No 108
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=54.11 E-value=29 Score=33.00 Aligned_cols=48 Identities=23% Similarity=0.190 Sum_probs=29.5
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcC--------CcccccCCchhhHHhhHHHHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCG--------KSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~--------~~~~~~~~pdeaVA~GAa~~a 164 (418)
+.+.|+|-||.+..|.+.+.|++.+.. ..+..+...+.++++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 457888877766655555555554421 122334455788999999865
No 109
>PRK09557 fructokinase; Reviewed
Probab=53.72 E-value=25 Score=33.40 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=29.1
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcC--------CcccccCCchhhHHhhHHHHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCG--------KSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~--------~~~~~~~~pdeaVA~GAa~~a 164 (418)
+.+.|+|-||.++.+.+-+.+++.+.. .++..+.-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 457888888877766555445444311 122333345678899999754
No 110
>PLN03170 chalcone synthase; Provisional
Probab=52.83 E-value=58 Score=32.55 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=40.0
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCC-CcHHHHHHHHHHhcC
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST-RIPKVQSLLQNFFCG 143 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss-riP~v~~~l~~~f~~ 143 (418)
.-.+-..+..+++|+++++++++||.|+++-.+. .+|.+.-.|.+.+|-
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl 154 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGL 154 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCc
Confidence 3444567788999999999999999998877544 699999999999863
No 111
>PLN03172 chalcone synthase family protein; Provisional
Probab=51.84 E-value=52 Score=32.79 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=39.9
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCC-CcHHHHHHHHHHhc
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST-RIPKVQSLLQNFFC 142 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss-riP~v~~~l~~~f~ 142 (418)
+.-.+-..+.++++|+++++++++||.|+++-.+. .+|.+--.|.+.+|
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 33444556778999999999999999998777554 69999999999985
No 112
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=50.48 E-value=66 Score=29.28 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCC--cHHHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTR--IPKVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssr--iP~v~~~l~~~f~~ 143 (418)
....++++|+++++++++|+.|++...+.- .|.+...|...++-
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~ 56 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGI 56 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCC
Confidence 457788899999999999999887764333 57888889888864
No 113
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=50.32 E-value=67 Score=34.41 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CC---CCHHHHHHHHHHHHHHH---------------HH---HHHHHhcCCCCCCCC
Q psy7645 350 SEKSRCREECDATLKWLDNN---TL---ADKEEYQDKLQQLQKSC---------------MP---LMSKMHGGAGGASAG 405 (418)
Q Consensus 350 ~e~~~i~~~l~~~~~WL~~~---~~---a~~~e~~~kl~~L~~~~---------------~~---i~~r~~e~~~~~~~~ 405 (418)
+.++.+...+.+++++|++. .. ...+.+.+.++++++.+ +. +...+..+...++.|
T Consensus 539 eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~ 618 (653)
T PTZ00009 539 EAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGG 618 (653)
T ss_pred HHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 45667777788888888642 11 23334444433333322 22 223344455677889
Q ss_pred CCCCCCCC
Q psy7645 406 DMPRGGPT 413 (418)
Q Consensus 406 ~~~~~~~~ 413 (418)
|||+++|-
T Consensus 619 ~~~~~~~~ 626 (653)
T PTZ00009 619 GMPGGMPG 626 (653)
T ss_pred CCCCCCCC
Confidence 99999985
No 114
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=49.77 E-value=42 Score=32.79 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
-+.+.+.++++.. .+..|+++||-+...++|+.|++...
T Consensus 250 ~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~~ 288 (345)
T PTZ00340 250 MLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMAK 288 (345)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHHH
Confidence 3344455555543 36889999999999999999998873
No 115
>PLN03168 chalcone synthase; Provisional
Probab=49.45 E-value=71 Score=31.79 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=41.1
Q ss_pred HHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCC-CCcHHHHHHHHHHhc
Q psy7645 89 FEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFC 142 (418)
Q Consensus 89 fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs-sriP~v~~~l~~~f~ 142 (418)
.+...+.-.+-..+..+++|+++++++++||.|+++-.+ -.+|.+--.|.+.+|
T Consensus 94 ~~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 94 HDIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333344445556778899999999999999999877533 357999999999985
No 116
>PLN02854 3-ketoacyl-CoA synthase
Probab=48.74 E-value=51 Score=34.10 Aligned_cols=43 Identities=7% Similarity=0.187 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHcCCCccccceEEEe-cCCCCcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLV-GGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lv-GGssriP~v~~~l~~~f~ 142 (418)
+...++++|+++|++++|||.|++. .+....|.+..+|.+.+|
T Consensus 192 ~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 192 MFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 3567788899999999999999862 233347999999999995
No 117
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=48.28 E-value=19 Score=35.50 Aligned_cols=38 Identities=8% Similarity=0.146 Sum_probs=32.2
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcH
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP 131 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP 131 (418)
+.....+...++++|++++++++|||.+++.+++.++-
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 34455667889999999999999999999999998753
No 118
>KOG0103|consensus
Probab=47.30 E-value=67 Score=34.02 Aligned_cols=62 Identities=26% Similarity=0.501 Sum_probs=44.5
Q ss_pred HHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCC--------CCC---HHHHHHHHHHHHHHHHHHHH
Q psy7645 325 ARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT--------LAD---KEEYQDKLQQLQKSCMPLMS 393 (418)
Q Consensus 325 arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~--------~a~---~~e~~~kl~~L~~~~~~i~~ 393 (418)
+..+|+..|..+|..++ ++..+....+.+.+.|++... +++ .++...+.++|.+.+.||++
T Consensus 653 ~~d~~~~~i~~~r~~~~--------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~ 724 (727)
T KOG0103|consen 653 AFDELGKKIQEIRKAIE--------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIIS 724 (727)
T ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhccccccccc
Confidence 44455555555555443 267788888999999999641 233 37899999999999999986
Q ss_pred H
Q psy7645 394 K 394 (418)
Q Consensus 394 r 394 (418)
+
T Consensus 725 ~ 725 (727)
T KOG0103|consen 725 K 725 (727)
T ss_pred c
Confidence 5
No 119
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=47.23 E-value=43 Score=32.45 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH
Q psy7645 90 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 135 (418)
Q Consensus 90 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~ 135 (418)
|...+...+.+..+++++|++++++.+|||.|-.+=|...++.+.-
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~V 89 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLV 89 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHH
Confidence 3456677888999999999999999999999999999999998764
No 120
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=46.86 E-value=27 Score=34.23 Aligned_cols=45 Identities=22% Similarity=0.143 Sum_probs=32.5
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCc---ccccCCchhhHHhhHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKS---LNLSINPDEAVAYGAA 161 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~---~~~~~~pdeaVA~GAa 161 (418)
++|.|++.||-+..+.+.+.|.+.+.... +....+-.+|.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57999999999999988888888774222 1222344578888876
No 121
>PRK14878 UGMP family protein; Provisional
Probab=45.87 E-value=2.2e+02 Score=27.39 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=46.6
Q ss_pred HHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHH------HHHHHHhcCCcccccCCchhhHHh
Q psy7645 92 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ------SLLQNFFCGKSLNLSINPDEAVAY 158 (418)
Q Consensus 92 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~------~~l~~~f~~~~~~~~~~pdeaVA~ 158 (418)
......+.+...++++|+++++++.|||.|.+.-|....+.++ +.|...+ +. +...+|..++=+.
T Consensus 40 ~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~-~~-p~~~v~h~~~Ha~ 110 (323)
T PRK14878 40 AAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKY-NK-PLVPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHh-CC-CccccchHHHHHH
Confidence 3344556778889999999999999999999998877777665 3445555 33 3455666655554
No 122
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=45.32 E-value=50 Score=26.16 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccc--eEEEecCCCCcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIH--DVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~--~V~lvGGssriP~v~~~l~~~f~ 142 (418)
.-...+.+-|+.+|+.+|.+.++|- .|+|+.-....+.+.+...++|+
T Consensus 33 ~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 33 AQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 3445566677788888999998874 45667655788889899999996
No 123
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=44.33 E-value=1.2e+02 Score=24.43 Aligned_cols=88 Identities=16% Similarity=0.258 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCceeEEEEeeccCCceeEEEeCHHHHHHHHh---HH
Q psy7645 20 FDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCS---DL 96 (418)
Q Consensus 20 ~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~~~itr~~fe~l~~---~~ 96 (418)
|+..|-.++-.-|.+.++..+ .......+|.++|+.-...+|..... ++ ..|.+.++.++|+.+.. .+
T Consensus 4 ~E~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---aP-----N~y~V~Ls~~D~~~l~~~~~~l 74 (116)
T PF12401_consen 4 FERRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---AP-----NVYTVELSPEDYERLSPWGDRL 74 (116)
T ss_dssp -----SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---cC-----eeEEEEECHHHHHHHhhhHHHH
Confidence 334444444444555555443 23455667888888776666654321 22 25789999999999987 57
Q ss_pred HHhhHHHHHHHHHHcCCCcc
Q psy7645 97 FRSTLQPVEKALQDAKLDKS 116 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~ 116 (418)
...+.+.+.+-..+.+++..
T Consensus 75 ~~el~~~l~~~a~~qgy~~~ 94 (116)
T PF12401_consen 75 ARELADYLAEHAREQGYTFV 94 (116)
T ss_dssp HHHHHHHHHHHHHHHT-B-S
T ss_pred HHHHHHHHHHHHHHCCCeec
Confidence 77777777777777776553
No 124
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=44.13 E-value=21 Score=33.92 Aligned_cols=65 Identities=18% Similarity=0.108 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHH
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~ 162 (418)
-..+++.+.|+.+....+..+.+ -.++.+||.. |++-..|.+.++-..+..+..|.-+-|+||++
T Consensus 219 ~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 219 IANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEE-E-------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCccc-cccccccccc--cccccccccccccccccccccccccccccccc
Confidence 34444555555555555766654 3455566665 66777777777544555566678899999985
No 125
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=43.89 E-value=2.3e+02 Score=27.27 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=44.9
Q ss_pred HhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHH------HHHHHHhcCCcccccCCchhhHHh
Q psy7645 93 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ------SLLQNFFCGKSLNLSINPDEAVAY 158 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~------~~l~~~f~~~~~~~~~~pdeaVA~ 158 (418)
.....+.+...++++|+++++++.|||.|.+.-|....+.++ +.|...+ +. +...++..+|=|.
T Consensus 42 ~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~-~~-p~~~v~h~~aHa~ 111 (322)
T TIGR03722 42 AEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKL-NK-PLVGVNHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHh-CC-CeechhhHHHHHH
Confidence 344556677889999999999999999999999877777665 3344445 22 3345555555444
No 126
>PRK14878 UGMP family protein; Provisional
Probab=43.40 E-value=76 Score=30.65 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=22.2
Q ss_pred cceEEEecCCCCcHHHHHHHHHHh
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f 141 (418)
+..|+|.||.+...++++.+.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999876
No 127
>PLN02192 3-ketoacyl-CoA synthase
Probab=42.99 E-value=77 Score=32.76 Aligned_cols=52 Identities=12% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCC--CcHHHHHHHHHHhc
Q psy7645 90 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST--RIPKVQSLLQNFFC 142 (418)
Q Consensus 90 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss--riP~v~~~l~~~f~ 142 (418)
++..+....-+...++++|++++++++|||.|+.. .+. -.|.+..+|.+.+|
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVN-CSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhC
Confidence 33333333445677889999999999999988766 333 47999999999995
No 128
>KOG0680|consensus
Probab=42.97 E-value=42 Score=32.18 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.6
Q ss_pred cceEEEecCCCCcHHHHHHHHHHh
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f 141 (418)
+..|+++||++..|..++.|...+
T Consensus 318 ~~NIv~iGGn~~fPgF~~RL~~El 341 (400)
T KOG0680|consen 318 LENIVCIGGNSNFPGFRQRLAREL 341 (400)
T ss_pred HhcEEEecCccCCcchHHHHHHHH
Confidence 578999999999999999998766
No 129
>PRK06840 hypothetical protein; Validated
Probab=42.27 E-value=74 Score=30.70 Aligned_cols=45 Identities=20% Similarity=0.270 Sum_probs=33.9
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCC---CcHHHHHHHHHHhc
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGST---RIPKVQSLLQNFFC 142 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss---riP~v~~~l~~~f~ 142 (418)
+-..+.++++|+++++++++||.|+.++-.+ ..|..-..|...+|
T Consensus 55 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lG 102 (339)
T PRK06840 55 DMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIG 102 (339)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhC
Confidence 3446788899999999999999998766322 36766667777775
No 130
>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=42.13 E-value=44 Score=33.12 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
.....++++|+++++.+++|++|...|=++.. +.=.+.|++.|+.
T Consensus 255 ~~~~ai~~Al~~agi~p~dId~i~~hgtgt~~~D~~E~~al~~~fg~ 301 (381)
T PRK05952 255 SAIAAIQQCLARSGLTPEDIDYIHAHGTATRLNDQREANLIQALFPH 301 (381)
T ss_pred HHHHHHHHHHHHhCCCHHHeeEEEccCCCCCCCcHHHHHHHHHHcCC
Confidence 45678899999999999999999999988876 4555678899964
No 131
>KOG0677|consensus
Probab=42.12 E-value=51 Score=30.59 Aligned_cols=144 Identities=24% Similarity=0.319 Sum_probs=75.6
Q ss_pred CCchHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC-----------ceeEEEEee--ccCCcee
Q psy7645 14 HLGGEDFDNRLVSHLAEEFKRKYKKDMSVNPRALRRLRTAAERAKRTLSSS-----------TEASIEIDA--LYDGIDF 80 (418)
Q Consensus 14 ~LGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~LS~~-----------~~~~i~i~~--~~~~~d~ 80 (418)
.+.|+|++.-|++.+..+ .|..+-+.+- +.+...|+.|..- -++++-+++ +.+|.
T Consensus 180 dvAGRdiTryLi~LLl~r---GYafN~tADF-------ETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGR-- 247 (389)
T KOG0677|consen 180 DVAGRDITRYLIKLLLRR---GYAFNHTADF-------ETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGR-- 247 (389)
T ss_pred cccchhHHHHHHHHHHhh---ccccccccch-------HHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCc--
Confidence 578999999988887654 1211111111 2233444444221 122232222 33444
Q ss_pred EEEeCHHHHH---HHHhHHHHh-----hHHHHHHHHHHcCCCc--cccceEEEecCCCCcHHHHHHHHHHhcC-------
Q psy7645 81 YTKISRARFE---ELCSDLFRS-----TLQPVEKALQDAKLDK--SAIHDVVLVGGSTRIPKVQSLLQNFFCG------- 143 (418)
Q Consensus 81 ~~~itr~~fe---~l~~~~~~~-----~~~~i~~~l~~~~~~~--~~i~~V~lvGGssriP~v~~~l~~~f~~------- 143 (418)
.+++--+.|| .+.+|-+-. +.+++-+++..+.++. +--.+|+|.||||.-|.+-..|++.+..
T Consensus 248 vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL 327 (389)
T KOG0677|consen 248 VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVL 327 (389)
T ss_pred EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHH
Confidence 3455556664 455552211 2334444445444332 1136899999999999877776654421
Q ss_pred --C---------cccccCCchhhHHhhHHHHHHHHhC
Q psy7645 144 --K---------SLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 144 --~---------~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
. .+..+..-...|-+|.|..|.+...
T Consensus 328 ~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 328 KGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred cCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 1 1222333346788888888877654
No 132
>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed
Probab=41.83 E-value=45 Score=33.15 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcCC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCGK 144 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~~ 144 (418)
....++++|++++++++||+.|.+.|-+|+. +.=...|.+.|+..
T Consensus 262 ~~~a~~~Al~~Agl~~~dId~v~~hgtgt~~~D~~E~~al~~~f~~~ 308 (392)
T PRK09185 262 AILAMQQALADAGLAPADIGYINLHGTATPLNDAMESRAVAAVFGDG 308 (392)
T ss_pred HHHHHHHHHHHcCCCHHHccEEEeCCCCCcCCCHHHHHHHHHHhCCC
Confidence 3578899999999999999999999988875 44446788899643
No 133
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=41.50 E-value=1.6e+02 Score=22.51 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCC
Q psy7645 300 EEIDRMINDAERYKD--EDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT 370 (418)
Q Consensus 300 eei~~~~~~~~~~~~--~D~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~ 370 (418)
.++..++..++.+.. .+.-......++..+++.+..+++.+.+ ....-+....+....+.+++.+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED----AADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCh
Confidence 345555555544442 2333344455666777777777766642 122234455566666666666654
No 134
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=40.42 E-value=2e+02 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7645 350 SEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 399 (418)
Q Consensus 350 ~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~i~~r~~e~~ 399 (418)
.++..+.+.|++-.+.|+- -...++.+-+.|+.-++.+...+..+.
T Consensus 66 ~~k~~~~~eL~er~E~Le~----ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 66 VSKEEAVDELEERKETLEL----RIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666653 123344444444444444444555444
No 135
>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional
Probab=38.91 E-value=53 Score=32.07 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=39.1
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
.......++++|+++++++++|++|..-|=+|.. +.=...|++.|+.
T Consensus 205 ~~~~~~ai~~AL~~Agl~p~dIdyIeaHgtgT~~~D~~E~~Ai~~~fg~ 253 (342)
T PRK14691 205 GDGAYRAMKIALRQAGITPEQVQHLNAHATSTPVGDLGEINAIKHLFGE 253 (342)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEecCCCCcCCCHHHHHHHHHHhCC
Confidence 3445678999999999999999999999988877 5556689999964
No 136
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=38.33 E-value=50 Score=31.14 Aligned_cols=49 Identities=20% Similarity=0.145 Sum_probs=35.9
Q ss_pred CccccceEEEecCCCCcHHHHHHHHHHhc---CCcccccCCchhhHHhhHHH
Q psy7645 114 DKSAIHDVVLVGGSTRIPKVQSLLQNFFC---GKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 114 ~~~~i~~V~lvGGssriP~v~~~l~~~f~---~~~~~~~~~pdeaVA~GAa~ 162 (418)
=+..+|.|+|+||-.+--.+-++|.+... ...+.-.-|-.+|-|.||.-
T Consensus 293 L~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 293 LKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred cCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 34678999999999999988888887652 12223344566899999863
No 137
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=38.32 E-value=73 Score=29.54 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred ccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHH
Q psy7645 117 AIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 117 ~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.+|.|+| |+|-.|++.+.+++.|+. .+ .-+||.+++|.=+.
T Consensus 172 ~~d~lIL--GCTh~P~l~~~i~~~~~~-~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVVL--GCTHFPLLKEEIEQYLPE-HV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEEE--CcCChHHHHHHHHHHcCC-Cc-EEECCHHHHHHHHH
Confidence 4677655 999999999999999953 22 56899888888554
No 138
>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=38.21 E-value=60 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.176 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
....++++|+++++++++|++|..-|=+|.. +.=.+.|++.|+.
T Consensus 288 ~~~a~~~Al~~agi~~~did~ie~hgtgt~~~D~~E~~Al~~~fg~ 333 (418)
T PRK07910 288 AGHAMTRAIELAGLTPGDIDHVNAHATGTSVGDVAEGKAINNALGG 333 (418)
T ss_pred HHHHHHHHHHHhCCCHHHCCEEEcCCcCCCCCCHHHHHHHHHHhCC
Confidence 4678999999999999999999999988766 5566789999974
No 139
>PHA02102 hypothetical protein
Probab=38.01 E-value=67 Score=22.68 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy7645 372 ADKEEYQDKLQQLQKSCMPLMSKMHGGAGGA 402 (418)
Q Consensus 372 a~~~e~~~kl~~L~~~~~~i~~r~~e~~~~~ 402 (418)
+...++.++..+|+++..++...+.++.+|=
T Consensus 2 arsneLvekA~eLqkLl~eV~dlAse~~yGv 32 (72)
T PHA02102 2 ARSNELVEKALELQKLLKEVKDLASEQDYGV 32 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhhccce
Confidence 3567899999999999999999999988774
No 140
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=37.85 E-value=78 Score=30.25 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=35.0
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
..+..+...++++|+++++++++|+.+++-.++ +.+.+.+.+.++
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg 266 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLG 266 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcC
Confidence 334556778999999999999999999999876 344566777763
No 141
>PHA02557 22 prohead core protein; Provisional
Probab=37.30 E-value=3.5e+02 Score=25.26 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHH-HHHHHHhc-cCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Q psy7645 301 EIDRMINDAERYKDEDERQKERISARNNLEAYVFN-VKQALDNA-GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQ 378 (418)
Q Consensus 301 ei~~~~~~~~~~~~~D~~~r~~~~arN~LE~~iy~-~r~~L~~~-~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~ 378 (418)
.+..|...+.++. ++........+.|+.++.. .|..+-.. ..-+++.++.++...+.-+. . .+.|.
T Consensus 142 vV~em~~~L~E~e---~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egve--------f-~e~F~ 209 (271)
T PHA02557 142 VVAEMEEELDEME---EELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLE--------F-SETFS 209 (271)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccc--------h-hhHHH
Confidence 3445555544443 3444455566677777744 44444444 66788888888766533222 1 47899
Q ss_pred HHHHHHHHHHHHHHH
Q psy7645 379 DKLQQLQKSCMPLMS 393 (418)
Q Consensus 379 ~kl~~L~~~~~~i~~ 393 (418)
.|+..|..++.+...
T Consensus 210 ~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 210 KKLTAIVEMVFKSKD 224 (271)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999988876543
No 142
>PLN02939 transferase, transferring glycosyl groups
Probab=37.18 E-value=2.4e+02 Score=31.60 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHHHHHHHh
Q psy7645 297 LSKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNA---GNKLTESEKSRCREECDATLKWLD 367 (418)
Q Consensus 297 ls~eei~~~~~~~~~~~~~D~~~r~~~~arN~LE~~iy~~r~~L~~~---~~~~~~~e~~~i~~~l~~~~~WL~ 367 (418)
+-+++++-++.++....+-|+..+..+..|.-|++++-.+..++... ...+++-+.+.+.+.+..++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888888889999998888887543 334555545556666666666665
No 143
>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II. FabB sequences should fall well below the noise cutoff of this model.
Probab=37.13 E-value=59 Score=32.26 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
....++++|++++++++|||.|++-|-+|.. +.-...+.+.|+.
T Consensus 277 ~~~ai~~Al~~Agi~~~dId~ve~h~tgt~~~D~~E~~a~~~~~~~ 322 (407)
T TIGR03150 277 AARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRVFGD 322 (407)
T ss_pred HHHHHHHHHHHcCCCHhHCCEEeCcCCCCCCCCHHHHHHHHHHhcc
Confidence 4578899999999999999999999988866 4555678889964
No 144
>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=36.85 E-value=70 Score=31.31 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=38.4
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhcC
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFCG 143 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~~ 143 (418)
.+-..+.++++|+++++++++||.|+++.-+ -.+|...-.|.+.+|-
T Consensus 61 ~~la~~Aa~~aL~~a~~~~~dId~lI~~t~t~d~~~P~~a~~v~~~Lg~ 109 (353)
T PRK12880 61 SDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNL 109 (353)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCC
Confidence 3445678899999999999999999966655 4699999999999853
No 145
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=36.71 E-value=96 Score=29.90 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=30.6
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcC--Cccccc---CCchhhHHhh
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCG--KSLNLS---INPDEAVAYG 159 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~--~~~~~~---~~pdeaVA~G 159 (418)
+..|+|.||.....++.+.|.+.+.. .++..+ .--|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 67899999999999999999986521 223222 1347888888
No 146
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=36.28 E-value=1.3e+02 Score=29.16 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhc
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFC 142 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~ 142 (418)
.+-.....+++|++++++++|||-|++.--+ --.|..--.|.+.+|
T Consensus 53 s~la~~Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG 100 (323)
T COG0332 53 SDLAVEAARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLG 100 (323)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhC
Confidence 3455788899999999999999999998866 456889999999996
No 147
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=36.21 E-value=72 Score=32.93 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=55.4
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHH-HHHHHHhcCCcc-cccCCchhhHHhh
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ-SLLQNFFCGKSL-NLSINPDEAVAYG 159 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~-~~l~~~f~~~~~-~~~~~pdeaVA~G 159 (418)
.+..-.+|-..++..+++++.-+-+-+.+..- .+.+.+.||....=..- +.+.+-+. ..+ ..+--.|.-.|.|
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f-~dlfV~Pa~gD~G~AvG 328 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLF-EDLFVQPAMGDAGLAVG 328 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccC-ceeEecCCCCCcchHHH
Confidence 34455567777788888877665555554321 58899999998776665 56665552 233 3344458899999
Q ss_pred HHHHHHHHhC
Q psy7645 160 AAVQAAILSG 169 (418)
Q Consensus 160 Aa~~a~~ls~ 169 (418)
||+++....+
T Consensus 329 AAl~~~~~~~ 338 (555)
T COG2192 329 AALAVKRELG 338 (555)
T ss_pred HHHHHHHHhc
Confidence 9999876544
No 148
>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=35.82 E-value=70 Score=31.99 Aligned_cols=48 Identities=23% Similarity=0.146 Sum_probs=38.6
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcCC
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCGK 144 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~~ 144 (418)
.......++++|+++++++++|+.|...|=+|.. +.=...|++.|+..
T Consensus 274 ~~~~~~ai~~AL~~Agi~p~dId~I~~Hgtgt~~~D~~E~~Ai~~~fg~~ 323 (405)
T PRK09116 274 AETMQIAMELALKDAGLAPEDIGYVNAHGTATDRGDIAESQATAAVFGAR 323 (405)
T ss_pred HHHHHHHHHHHHHHhCCCHHHcCEEECcCccCCCCCHHHHHHHHHHhCCC
Confidence 3445688899999999999999999999977754 45556889999643
No 149
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.73 E-value=4.2e+02 Score=27.91 Aligned_cols=80 Identities=19% Similarity=0.126 Sum_probs=44.8
Q ss_pred EeCHHHHHHHHhHH------HHhhHHHH---HHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCch
Q psy7645 83 KISRARFEELCSDL------FRSTLQPV---EKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPD 153 (418)
Q Consensus 83 ~itr~~fe~l~~~~------~~~~~~~i---~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pd 153 (418)
.+|+..+-.+|... ++.+.++. ++++.=.+.-|....-|-++|+.-+--.+.+..++++ ..+....||.
T Consensus 36 ~~s~~rllrli~~~kpDIvAvDnvyEL~~~~~~li~il~~lP~~tkLVQVTg~~g~~~sL~~lArr~G--~~~~~~~~P~ 113 (652)
T COG2433 36 EVSLRRLLRLIWSYKPDIVAVDNVYELGADKRDLIRILKRLPEGTKLVQVTGRPGEQESLWELARRHG--IRVNGKLNPY 113 (652)
T ss_pred hhhHHHHHHHHHhcCCCEEEeccHHHHhcChhHHHHHHHhCCCCceEEEEeCCCCCcchHHHHHHHhC--CCCCCCCChH
Confidence 45776666666541 12222222 2222223334555778888888777777877777765 3445567775
Q ss_pred hhHHhhHHHHHH
Q psy7645 154 EAVAYGAAVQAA 165 (418)
Q Consensus 154 eaVA~GAa~~a~ 165 (418)
+- |.=||++|+
T Consensus 114 ee-A~~~A~LA~ 124 (652)
T COG2433 114 EE-AYACARLAS 124 (652)
T ss_pred HH-HHHHHHHHh
Confidence 43 344566554
No 150
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=35.54 E-value=1.9e+02 Score=27.52 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCccccceEEE-ecCCCCcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVL-VGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~l-vGGssriP~v~~~l~~~f~ 142 (418)
+...++++|++++++|.|||.++. +...+-.|.+..+|.+.|+
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 367788999999999999997654 3466788999999999995
No 151
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=35.38 E-value=1.1e+02 Score=30.04 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=44.1
Q ss_pred HHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCccc----ccCCchhhHHhhHHHHHHHH
Q psy7645 109 QDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLN----LSINPDEAVAYGAAVQAAIL 167 (418)
Q Consensus 109 ~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~----~~~~pdeaVA~GAa~~a~~l 167 (418)
+....-..+-+.++++||+.+.|++.+.|...+++..+. ..+++|..=|.+=|+.|...
T Consensus 282 ~s~~~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 282 KSVATLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred HHHhhccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 333344566799999999999999999999999754443 25678877777778777643
No 152
>PRK00865 glutamate racemase; Provisional
Probab=35.17 E-value=81 Score=29.37 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHH
Q psy7645 101 LQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQ 163 (418)
Q Consensus 101 ~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~ 163 (418)
...+.+.++... ...+|.|+| |+|-+|++.+.+++.++. . ..-+||.+++|.=+.-+
T Consensus 163 ~~~l~~~l~~l~--~~g~d~iIL--GCTh~p~l~~~i~~~~~~-~-v~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 163 LEVLREYLAPLL--AAGIDTLVL--GCTHYPLLKPEIQQVLGE-G-VTLIDSGEAIARRVARL 219 (261)
T ss_pred HHHHHHHHHHHh--cCCCCEEEE--CCcCHHHHHHHHHHHcCC-C-CEEECCHHHHHHHHHHH
Confidence 344455554431 234677766 999999999999999853 2 24579988888766543
No 153
>PRK09604 UGMP family protein; Validated
Probab=34.93 E-value=1.2e+02 Score=29.36 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=49.5
Q ss_pred HhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHH------HHHHhcCCcccccCCchhhHHhhHH
Q psy7645 93 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSL------LQNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~------l~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.....+.+...++++|+++++++.+||.|...-|....+.++-- |...+ +. ....++.-++-|..|.
T Consensus 48 ~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~-~i-pl~~v~h~~~ha~~a~ 120 (332)
T PRK09604 48 SRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALAL-NK-PLIGVNHLEGHLLAPF 120 (332)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHh-CC-CEEeecCHHHHHHhhh
Confidence 34556778888999999999999999999999999888887643 44444 23 3455676777766433
No 154
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.84 E-value=1e+02 Score=25.42 Aligned_cols=22 Identities=14% Similarity=0.552 Sum_probs=16.8
Q ss_pred HHHHHHhcCC-CCCHHHHHHHHH
Q psy7645 361 ATLKWLDNNT-LADKEEYQDKLQ 382 (418)
Q Consensus 361 ~~~~WL~~~~-~a~~~e~~~kl~ 382 (418)
..++||++++ .-|.++|.+|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 4578999875 579999887743
No 155
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=34.69 E-value=1.2e+02 Score=29.07 Aligned_cols=68 Identities=16% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHH------HHHhcCCcccccCCchhhHHhhHH
Q psy7645 92 LCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL------QNFFCGKSLNLSINPDEAVAYGAA 161 (418)
Q Consensus 92 l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l------~~~f~~~~~~~~~~pdeaVA~GAa 161 (418)
.....-+.+...|+++|++++++..+||.|.++-|....+.+|--+ ...+ + .+...++..++-|..|.
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~-~p~~~v~h~~aha~~a~ 118 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-N-KPLIGVNHLEGHLLAPF 118 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-C-CCEEecccHHHHHHhhh
Confidence 4455677788899999999999999999999999999999887433 3333 2 34566777777765333
No 156
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=34.64 E-value=1.6e+02 Score=28.08 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHHHcCCC----ccccceEEE
Q psy7645 98 RSTLQPVEKALQDAKLD----KSAIHDVVL 123 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~----~~~i~~V~l 123 (418)
+-.....+++|++++++ +.+|+.|++
T Consensus 13 ~l~~~aa~~aL~~Ag~~~~~~~~~i~~ii~ 42 (332)
T cd00825 13 ILGFEAAERAIADAGLSREYQKNPIVGVVV 42 (332)
T ss_pred HHHHHHHHHHHHHcCCCccccCCCCEEEEE
Confidence 34567889999999999 889999874
No 157
>PRK06065 acetyl-CoA acetyltransferase; Provisional
Probab=34.43 E-value=93 Score=31.00 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCC----CCcHHHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGS----TRIPKVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGs----sriP~v~~~l~~~f~~ 143 (418)
..+.++++|+++++++.+||.+++ |.. +-.|.+...+...++.
T Consensus 33 ~~~A~~~Al~dagl~~~dID~~i~-~~~~~~~~~~~~~a~~l~~~lG~ 79 (392)
T PRK06065 33 AWEAASKALDEAGLELKDIDCVVI-GSAPDAFDGVHMKGEYLSHGSGG 79 (392)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE-eccCCcccccccHHHHHHHHcCC
Confidence 456788999999999999999986 321 1245566777777653
No 158
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=34.34 E-value=72 Score=25.11 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=30.4
Q ss_pred eeEEEEEecCC-ceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHH
Q psy7645 260 KIDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 312 (418)
Q Consensus 260 ~i~v~~~id~~-g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~ 312 (418)
...+.|.+|.+ |.+.|++.|..||+... .+.++++-++.+.+.++
T Consensus 54 ~~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 54 NTSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLREL 99 (107)
T ss_dssp S--EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHH
T ss_pred CCceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHH
Confidence 35689999886 78999999999987532 25678777776665543
No 159
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=34.32 E-value=67 Score=30.74 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH------HHHHHhcCCcccccCCchhhHHh
Q psy7645 91 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS------LLQNFFCGKSLNLSINPDEAVAY 158 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~------~l~~~f~~~~~~~~~~pdeaVA~ 158 (418)
.......+.+...++++|+++++++.|||.|.+.-|....+.++- .|...+ +. +...++.-++-|.
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~-~~-p~~~v~hl~~ha~ 114 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSL-DK-PLIGVNHLLGHIY 114 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHh-CC-CEeecccHHHHHH
Confidence 344556677888999999999999999999999999998888874 333344 23 3455666666655
No 160
>PLN00415 3-ketoacyl-CoA synthase
Probab=33.67 E-value=99 Score=31.53 Aligned_cols=41 Identities=7% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCCccccceEEEecCCC-CcHHHHHHHHHHhc
Q psy7645 102 QPVEKALQDAKLDKSAIHDVVLVGGST-RIPKVQSLLQNFFC 142 (418)
Q Consensus 102 ~~i~~~l~~~~~~~~~i~~V~lvGGss-riP~v~~~l~~~f~ 142 (418)
..++++|+++++++++||.|+..+..- ..|.+--.|.+.++
T Consensus 140 ~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LG 181 (466)
T PLN00415 140 GALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYK 181 (466)
T ss_pred HHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhC
Confidence 467788999999999999988554322 47999999999885
No 161
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=33.64 E-value=1.3e+02 Score=30.69 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=45.7
Q ss_pred HhhHHHHHHHHHHcCCCccccc--eEEEecCCCCcHHHHH---HHHHHhcCCcccccCCch-hh--HHhhHHHHH
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIH--DVVLVGGSTRIPKVQS---LLQNFFCGKSLNLSINPD-EA--VAYGAAVQA 164 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~--~V~lvGGssriP~v~~---~l~~~f~~~~~~~~~~pd-ea--VA~GAa~~a 164 (418)
+.+..+|++-.++||+.+++|+ +|+++|=+.|=-=-++ .|....| .=+..+--|| |+ +++||.-.+
T Consensus 63 ~al~~iv~~eY~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aG-DFVVATAGPdLEsiiAgkGsGA~~ 136 (473)
T PF06277_consen 63 EALKEIVEEEYRKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAG-DFVVATAGPDLESIIAGKGSGAAA 136 (473)
T ss_pred HHHHHHHHHHHHHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcC-CEEEEccCCCHHHHHhccCccHHH
Confidence 4567788888999999999996 8999999998765554 4455553 3344455566 43 456665443
No 162
>PLN03171 chalcone synthase-like protein; Provisional
Probab=33.64 E-value=1.3e+02 Score=30.13 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=38.6
Q ss_pred HhHHHHhhHHHHHHHHHHcCCCccccceEEEecCC-CCcHHHHHHHHHHhc
Q psy7645 93 CSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFC 142 (418)
Q Consensus 93 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs-sriP~v~~~l~~~f~ 142 (418)
.+...+-..+..+++|+++++++++||.|+++-.+ -.+|...-.|.+.+|
T Consensus 105 ~~~a~~la~~Aa~~aL~~ag~~~~dId~li~~t~t~~~~P~~a~~v~~~LG 155 (399)
T PLN03171 105 ADAVPELAAEAAKKAIAEWGRPAADITHLVVTTNSGAHIPGVDFRLVPLLG 155 (399)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHhC
Confidence 34455556788999999999999999999984322 237888888988885
No 163
>KOG0104|consensus
Probab=33.60 E-value=4.8e+02 Score=28.40 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCC------------CCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7645 346 KLTESEKSRCREECDATLKWLDNNT------------LADKEEYQDKLQQLQKSCMPLMSKMHGGA 399 (418)
Q Consensus 346 ~~~~~e~~~i~~~l~~~~~WL~~~~------------~a~~~e~~~kl~~L~~~~~~i~~r~~e~~ 399 (418)
.++..+...|.+.+.+.-.|+.+.. ..+.+++.+|.+.|+..+.-.++|+.-+.
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~ 839 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRK 839 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccC
Confidence 3677888999999999999998542 12678999999999999999999987654
No 164
>PRK09698 D-allose kinase; Provisional
Probab=33.39 E-value=1.4e+02 Score=28.27 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=30.9
Q ss_pred ccceEEEecCCCCc-----HHHHHHHHHHhc----C--CcccccCCchhhHHhhHHHHHH
Q psy7645 117 AIHDVVLVGGSTRI-----PKVQSLLQNFFC----G--KSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 117 ~i~~V~lvGGssri-----P~v~~~l~~~f~----~--~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
+.+.|+|-||.+.. +.+++.+++..- . ..+..+...+.+.++|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 45788888877764 345666665431 1 1233444567889999998764
No 165
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=33.26 E-value=1.2e+02 Score=29.04 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=35.2
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhc
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFC 142 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~ 142 (418)
+-....++++|+++++++++||.|+.+..+ ...|.....|...+|
T Consensus 55 ~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~a~~l~~~lg 101 (325)
T PRK12879 55 DLAIKAAERALARAGLDAEDIDLIIVATTTPDYLFPSTASQVQARLG 101 (325)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHhC
Confidence 345778899999999999999998865532 356877788888885
No 166
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=33.26 E-value=76 Score=31.02 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=38.8
Q ss_pred HHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH
Q psy7645 91 ELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS 135 (418)
Q Consensus 91 ~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~ 135 (418)
.......+.+...++++|+++++++.+||.|-.+-|....|.++-
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrV 88 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSV 88 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHH
Confidence 445567788899999999999999999999999999988787764
No 167
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=33.22 E-value=1.4e+02 Score=29.04 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=34.2
Q ss_pred cccceEEEecCCCCc-HHHHHHHH---HHhc--CCcccccCCchhhHHhhHHHH
Q psy7645 116 SAIHDVVLVGGSTRI-PKVQSLLQ---NFFC--GKSLNLSINPDEAVAYGAAVQ 163 (418)
Q Consensus 116 ~~i~~V~lvGGssri-P~v~~~l~---~~f~--~~~~~~~~~pdeaVA~GAa~~ 163 (418)
..+..|+++|...|. |...+.|. +++. ..++...-|..-+-|.||.+.
T Consensus 286 ~~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 286 HGVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp HT--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred cCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 458999999999976 67788887 5553 234445668889999999874
No 168
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.01 E-value=2.2e+02 Score=21.64 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=26.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q psy7645 344 GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 386 (418)
Q Consensus 344 ~~~~~~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~ 386 (418)
...+|++.+..+.+.+..+..-|.. |+.+|+.|++
T Consensus 30 ~~eLs~e~R~~lE~E~~~l~~~l~~--------~E~eL~~Lrk 64 (85)
T PF15188_consen 30 RRELSPEARRSLEKELNELKEKLEN--------NEKELKLLRK 64 (85)
T ss_pred ccCCChHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHH
Confidence 3568999999999888888887765 5666676665
No 169
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=32.87 E-value=82 Score=31.31 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=37.7
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCCCcH--HHHHHHHHHhcC
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP--KVQSLLQNFFCG 143 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP--~v~~~l~~~f~~ 143 (418)
......++++|+++++++++||.|.+.|-+|..- .=.+.|...|+.
T Consensus 279 ~~~~~a~~~al~~Agi~~~did~i~~hgtgt~~~D~~E~~al~~~f~~ 326 (421)
T cd00833 279 EAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGG 326 (421)
T ss_pred HHHHHHHHHHHHHhCCCHHHCcEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 3456788999999999999999999999888764 344678888864
No 170
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=32.86 E-value=24 Score=29.57 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=46.7
Q ss_pred CceeEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhH
Q psy7645 77 GIDFYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAV 156 (418)
Q Consensus 77 ~~d~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaV 156 (418)
+..+++-|=.++|++ .+.+++.+-..+.|...|...++| .|+-|=|+--+|+.-+.+.+. -+.|-.|
T Consensus 5 ~~~~ri~IV~s~fn~---~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s---------~~~DavI 71 (141)
T PLN02404 5 GEGLRFGVVVARFNE---IITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKS---------GKYDAIL 71 (141)
T ss_pred CCCCEEEEEEecCcH---HHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhc---------CCCCEEE
Confidence 334455555556654 445556666667777888776555 556888999999987776531 1245555
Q ss_pred HhhHHHHH
Q psy7645 157 AYGAAVQA 164 (418)
Q Consensus 157 A~GAa~~a 164 (418)
|.||.+.+
T Consensus 72 aLG~VIrG 79 (141)
T PLN02404 72 CIGAVIRG 79 (141)
T ss_pred EEEEEEeC
Confidence 56655544
No 171
>COG4709 Predicted membrane protein [Function unknown]
Probab=32.37 E-value=1.8e+02 Score=25.65 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHHH
Q psy7645 346 KLTESEKSRCREECDATLKWLDNNTLA--DKEEYQDKLQQLQKSCMPLMSK 394 (418)
Q Consensus 346 ~~~~~e~~~i~~~l~~~~~WL~~~~~a--~~~e~~~kl~~L~~~~~~i~~r 394 (418)
.++++++.. ++.++++..++.+.+ +.+|+-..|..=+++...+.++
T Consensus 16 ~Lp~~~r~e---~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~ 63 (195)
T COG4709 16 GLPREERRE---IMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSE 63 (195)
T ss_pred hCCHHHHHH---HHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHH
Confidence 567776654 467788888876543 5777777777777777666654
No 172
>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.90 E-value=1.4e+02 Score=28.66 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=35.4
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhcC
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFCG 143 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~~ 143 (418)
+-..+.++++|+++++.+++||.|+....+ ...|.....+...+|-
T Consensus 63 ~la~~Aa~~aL~~ag~~~~~Id~li~~s~~~~~~~p~~a~~v~~~lgl 110 (338)
T PRK09258 63 DGAIAAGRKALAEAGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGL 110 (338)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCChHHHHHHHHcCC
Confidence 345677888999999999999998865432 4568788888888853
No 173
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=31.88 E-value=50 Score=30.94 Aligned_cols=67 Identities=16% Similarity=0.146 Sum_probs=46.5
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHH------HHHhcCCcccccCCchhhHHhhHHH
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLL------QNFFCGKSLNLSINPDEAVAYGAAV 162 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l------~~~f~~~~~~~~~~pdeaVA~GAa~ 162 (418)
+...+.+...++++|+++++++.|||.|...-|....+.+|--+ .-.+ ..+...++..++-+..+.+
T Consensus 27 r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~--~~Pli~v~~l~a~a~~~~~ 99 (268)
T PF00814_consen 27 RQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL--NIPLIGVSHLEAHALSARL 99 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT--T--EEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh--CCCeEeeccHHHHHHhHhh
Confidence 34556778889999999999999999999999998888887443 2233 2345566777776665543
No 174
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.80 E-value=2.5e+02 Score=26.77 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCC--CcHHHHHHHHHHhc
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGST--RIPKVQSLLQNFFC 142 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss--riP~v~~~l~~~f~ 142 (418)
+=..+.++++|+++++.+++||.|+.+.++. .+|...-.|...+|
T Consensus 54 ~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~p~~a~~v~~~lg 100 (329)
T PRK07204 54 YMGAEAAKKAVEDAKLTLDDIDCIICASGTIQQAIPCTASLIQEQLG 100 (329)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCccHHHHHHHHhC
Confidence 3446778899999999999999987664332 36888888888885
No 175
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=31.67 E-value=1.2e+02 Score=24.31 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHHHcC-CCcccc--ceEEEecCC--CCcHHHHHHHHHHhcC
Q psy7645 95 DLFRSTLQPVEKALQDAK-LDKSAI--HDVVLVGGS--TRIPKVQSLLQNFFCG 143 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~-~~~~~i--~~V~lvGGs--sriP~v~~~l~~~f~~ 143 (418)
.-...+.+-|+.+|+.+| .++++| -.|+|+.-+ ...+.+.+...++|++
T Consensus 34 ~Q~~~~~~Nl~~~L~~aG~~~~~dVvk~tvyltd~~~~~~~~~~~~~~~~~f~~ 87 (114)
T cd06152 34 EEIDQAFDNVELALKAAGGKGWEQVYKVNSYHVDIKNEEAFGLMVENFKKWMPN 87 (114)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHEEEEEEEEecCCcHHHHHHHHHHHHHHcCC
Confidence 344566677788889999 999887 356777652 5678888888888853
No 176
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=31.66 E-value=83 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.393 Sum_probs=23.0
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEe
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLV 124 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lv 124 (418)
.+.+.+.+++..+++..+++++||-+|+++
T Consensus 17 ~I~~at~eLl~~i~~~N~l~~~dIvSi~FT 46 (118)
T PF07736_consen 17 EILEATRELLEEILERNELSPEDIVSIIFT 46 (118)
T ss_dssp HHHHHHHHHHHHHHHHTT--GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 345677888888999999999999888865
No 177
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.33 E-value=73 Score=30.57 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
..+...++++|++++++++||+.+++..++.++ .+.+.+.++
T Consensus 230 ~~~~~~i~~~L~~~gl~~~did~~~~H~~~~~~---~~~i~~~l~ 271 (329)
T PRK07204 230 KYLMKFIDKLLMDAGYTLADIDLIVPHQASGPA---MRLIRKKLG 271 (329)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHHH---HHHHHHHcC
Confidence 346678899999999999999999999998653 456666674
No 178
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=31.25 E-value=3.8e+02 Score=28.13 Aligned_cols=100 Identities=15% Similarity=0.206 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCC-------
Q psy7645 298 SKEEIDRMINDAERYKDEDERQKERISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT------- 370 (418)
Q Consensus 298 s~eei~~~~~~~~~~~~~D~~~r~~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~------- 370 (418)
|.++++++.+.++++.+.=.........++++++|--+++..-. ...=++.+..+..+.++++..-+....
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~--~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK--KDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655555443333233333346777777666665433 233456655555555554444443211
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy7645 371 ---LADKEEYQDKLQQLQKSCMPLMSKMHGGA 399 (418)
Q Consensus 371 ---~a~~~e~~~kl~~L~~~~~~i~~r~~e~~ 399 (418)
....+.++..+.+|++.-..=..|..+.+
T Consensus 240 ~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~ 271 (555)
T TIGR03545 240 NDLQNDKKQLKADLAELKKAPQNDLKRLENKY 271 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhccHhHHHHHHHHh
Confidence 23667788888888888888888888765
No 179
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=30.85 E-value=1.1e+02 Score=24.73 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=35.4
Q ss_pred HHHhhHHHHHHHHHHcCCCcccc-ceEEEecCCCCcHHHHHHHHHHhcC
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAI-HDVVLVGGSTRIPKVQSLLQNFFCG 143 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i-~~V~lvGGssriP~v~~~l~~~f~~ 143 (418)
-...+..-++.+|+.+|.+.++| ...+.+-.....+.+.+...++|+.
T Consensus 49 Q~~~~~~ni~~~L~~aG~~~~dvv~~~vyv~~~~~~~~~~~~~~~~f~~ 97 (124)
T TIGR00004 49 QAEQVLENLKAILEAAGLSLDDVVKTTVFLTDLNDFAEVNEVYGQYFDE 97 (124)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeChHHHHHHHHHHHHHcCC
Confidence 34556677788888899888887 3334445678888899999999963
No 180
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=30.82 E-value=1.3e+02 Score=28.50 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhc
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFC 142 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~ 142 (418)
.+-....++++|+++++++++||.|++..-. ...|.+...|...+|
T Consensus 49 ~~l~~~a~~~aL~~ag~~~~~Id~li~~~~~~~~~~~~~~~~i~~~lg 96 (324)
T cd00827 49 PTMAVEAARRALERAGIDPDDIGLLIVATESPIDKGKSAATYLAELLG 96 (324)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCccHHHHHHHHcC
Confidence 3344677788999999999999998863321 225667777888875
No 181
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=30.71 E-value=1.5e+02 Score=29.06 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhcC
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFCG 143 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~~ 143 (418)
-....++++|+++++++++||.|++.... ...|...-.|...++-
T Consensus 98 la~~Aa~~aL~~agl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl 144 (372)
T PRK07515 98 MGVAAARQALARAGRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGI 144 (372)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCC
Confidence 34567788999999999999988764332 3467666677777753
No 182
>PLN03169 chalcone synthase family protein; Provisional
Probab=30.48 E-value=2.1e+02 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.199 Sum_probs=36.7
Q ss_pred HHHhhHHHHHHHHHHcCCCccccceEEEecCC-CCcHHHHHHHHHHhc
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFC 142 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs-sriP~v~~~l~~~f~ 142 (418)
..+-..+..+++|+++++++++||.|+++-.+ ..+|..--.|.+.+|
T Consensus 106 ~~~La~~Aa~~aL~~ag~~~~dId~lI~~t~t~~~~P~~a~~l~~~LG 153 (391)
T PLN03169 106 VTQMAVEASLACIKEWGRPVSDITHLVYVSSSEARLPGGDLYLAKQLG 153 (391)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCEEEEECcCCCCCCcHHHHHHHHhC
Confidence 44455778899999999999999998877531 267888888888885
No 183
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.47 E-value=1e+02 Score=23.90 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=36.1
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceE-EEecCCCCcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDV-VLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V-~lvGGssriP~v~~~l~~~f~ 142 (418)
.-...+.+-|+.+|+++|.+.++|-.+ +.+-..+..+.+.+...++|+
T Consensus 26 ~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 26 EQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 345566777888899999999887432 333457788899999999996
No 184
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=30.14 E-value=2.3e+02 Score=22.21 Aligned_cols=10 Identities=50% Similarity=1.102 Sum_probs=7.0
Q ss_pred HHHHHHHhcC
Q psy7645 360 DATLKWLDNN 369 (418)
Q Consensus 360 ~~~~~WL~~~ 369 (418)
..+.+||+.|
T Consensus 112 K~IleWL~KN 121 (122)
T PLN00078 112 KGILEWLDKN 121 (122)
T ss_pred HHHHHHHHcc
Confidence 3457899865
No 185
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=30.02 E-value=1.4e+02 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=34.3
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCC--CcHHHHHHHHHHhcC
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGST--RIPKVQSLLQNFFCG 143 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss--riP~v~~~l~~~f~~ 143 (418)
+=....++++|+++++++++||.|+....+. ..|.....|...++-
T Consensus 52 ~la~~A~~~al~~ag~~~~~Id~li~~~~~~~~~~~~~~~~l~~~lg~ 99 (320)
T cd00830 52 DLAVEAAKKALEDAGIDADDIDLIIVATSTPDYLFPATACLVQARLGA 99 (320)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCCcHHHHHHHHhCC
Confidence 3356778899999999999999987654321 257777888888853
No 186
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=29.82 E-value=34 Score=29.29 Aligned_cols=72 Identities=17% Similarity=0.102 Sum_probs=46.3
Q ss_pred eEEEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhh
Q psy7645 80 FYTKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYG 159 (418)
Q Consensus 80 ~~~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~G 159 (418)
+++-|=.++|++. +.+++.+-..+.|...|...++| .|+-|=|+--+|++-+.+.+. -+.|-.||.|
T Consensus 11 ~riaIV~srfn~~---It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG 77 (158)
T PRK12419 11 QRIAFIQARWHAD---IVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAA 77 (158)
T ss_pred CEEEEEEecCCHH---HHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEE
Confidence 3444444556543 33444444555667788877777 778999999999988776431 2356667777
Q ss_pred HHHHH
Q psy7645 160 AAVQA 164 (418)
Q Consensus 160 Aa~~a 164 (418)
|.+.+
T Consensus 78 ~VIrG 82 (158)
T PRK12419 78 LVVDG 82 (158)
T ss_pred EEEcC
Confidence 76654
No 187
>PLN02932 3-ketoacyl-CoA synthase
Probab=29.78 E-value=1.8e+02 Score=29.77 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEec-CCCCcHHHHHHHHHHhc
Q psy7645 89 FEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVG-GSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 89 fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvG-GssriP~v~~~l~~~f~ 142 (418)
++...+..-.=+...++++|+++++++++||.|+++- -..-.|.+..+|.+.+|
T Consensus 141 ~~~~~~ea~~la~~Aa~~aL~~agi~p~dId~lIv~tst~~~~Pslaa~V~~~lG 195 (478)
T PLN02932 141 LAVSRKETEEVIIGAVDNLFRNTGISPSDIGILVVNSSTFNPTPSLSSILVNKFK 195 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCCcHHHHHHHHhC
Confidence 3444444444456788999999999999999987554 22368889999999995
No 188
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=29.53 E-value=1.7e+02 Score=27.76 Aligned_cols=46 Identities=13% Similarity=0.344 Sum_probs=34.2
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhc
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFC 142 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~ 142 (418)
.+-....++++|+++++++.+|+.|++...+ ...|.....+...+|
T Consensus 52 ~~la~~A~~~al~~agl~~~~Id~~i~~~~~~~~~~~~~a~~l~~~lG 99 (318)
T TIGR00747 52 STMGFEAAKRAIENAGISKDDIDLIIVATTTPDHAFPSAACMVQAYLG 99 (318)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCChHHHHHHHHhC
Confidence 3345678889999999999999998865432 245766677888885
No 189
>cd06151 YjgF_YER057c_UK114_like_3 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=29.33 E-value=1.5e+02 Score=24.11 Aligned_cols=48 Identities=23% Similarity=0.276 Sum_probs=35.1
Q ss_pred HHHhhHHHHHHHHHHcCCCccccc--eEEEecCCC-----CcHHHHHHHHHHhcC
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIH--DVVLVGGST-----RIPKVQSLLQNFFCG 143 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~--~V~lvGGss-----riP~v~~~l~~~f~~ 143 (418)
-...+.+-|+.+|+.+|.+.++|- .+++++... .++.+.+...++|+.
T Consensus 42 Q~~~~l~ni~~~L~~aG~~~~dVvk~~vyl~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (126)
T cd06151 42 QTISVLKRIETILQSQGLTMGDVVKMRVFLVADPALDGKMDFAGFMKAYRQFFGT 96 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEEEEEEecCccccchhhHHHHHHHHHHHhcc
Confidence 345566777888999999988874 457776443 577788888899963
No 190
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=28.51 E-value=1.8e+02 Score=23.73 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.3
Q ss_pred eEEEEEecCC-ceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHH
Q psy7645 261 IDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDA 309 (418)
Q Consensus 261 i~v~~~id~~-g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~ 309 (418)
-.+.|++|.. |.+-|+..|.+||+... ...++++-++.+.+
T Consensus 67 t~l~F~~dd~lg~~vVkI~d~~TgeVIR--------qIPpee~L~l~~r~ 108 (120)
T COG1334 67 THLNFSYDDELGELVVKIIDKDTGEVIR--------QIPPEEALELAARM 108 (120)
T ss_pred CceEEEEecccCcEEEEEEECCCCcchh--------hCChHHHHHHHHHH
Confidence 3578888775 88999999999997542 35666666554443
No 191
>KOG2872|consensus
Probab=28.48 E-value=1.2e+02 Score=28.66 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=38.5
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCC
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 128 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss 128 (418)
-.+|.++|++.+-|.+.++.+.+.+-+.+.++.+ |-.|+..-|+.
T Consensus 218 geLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g 262 (359)
T KOG2872|consen 218 GELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSG 262 (359)
T ss_pred ccCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcc
Confidence 4789999999999999999999999999887655 67777777764
No 192
>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional
Probab=28.34 E-value=1.4e+02 Score=28.60 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
......++++|++++++++|||.+++.-++-+ +-+.+.+.++
T Consensus 226 ~~~~~~i~~~L~~~g~~~~did~~~~hq~~~~---~~~~~~~~lg 267 (326)
T CHL00203 226 FQVPAVIIKCLNALNISIDEVDWFILHQANKR---ILEAIANRLS 267 (326)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEECCCCHH---HHHHHHHHhC
Confidence 45677889999999999999999999998833 4455666663
No 193
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=28.19 E-value=2.3e+02 Score=20.61 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=31.7
Q ss_pred eEEEEEecCCceEEEEEEecCCCccceeeeccC--CCCCCHHHHHHHHHHH
Q psy7645 261 IDVTFDLDANGILNVTAKDTSSGKSQNITIKND--KGRLSKEEIDRMINDA 309 (418)
Q Consensus 261 i~v~~~id~~g~l~v~~~~~~~g~~~~i~i~~~--~~~ls~eei~~~~~~~ 309 (418)
....++++.+|.++|...+..+|... ++++.- ..-.|..+|.+++.++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eL 64 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAEL 64 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHH
Confidence 46788899999999999999988752 222211 1234566666666544
No 194
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=28.14 E-value=1.1e+02 Score=30.45 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=42.7
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHH
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 164 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a 164 (418)
...+.+.+++++++++++.++|..+..+|.+. ..+...|+... .++--.|-++||.++.
T Consensus 178 ~~~a~~~l~~~l~~~Gl~~~di~~i~~TGyGR------~~i~~~~~ad~---iv~EItaha~GA~~L~ 236 (404)
T TIGR03286 178 IESAEEAVERALEEAGVSLEDVEAIGTTGYGR------FTIGEHFGADL---IQEELTVNSKGAVYLA 236 (404)
T ss_pred HHHHHHHHHHHHHHcCCCccceeEEEeeeecH------HHHhhhcCCCc---eEEEEhhHHHHHHHhc
Confidence 55678888899999999999999999999874 44555563221 1333468889998753
No 195
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=28.03 E-value=1.4e+02 Score=28.29 Aligned_cols=45 Identities=16% Similarity=0.069 Sum_probs=34.0
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
.....+.+.++++|+++++++++|+.+++-.++. .+.+.+.+.++
T Consensus 216 ~~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~~---~~~~~~~~~lg 260 (319)
T PRK09352 216 FAVRELAKVAREALEAAGLTPEDIDWLVPHQANL---RIIDATAKKLG 260 (319)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCH---HHHHHHHHHhC
Confidence 3445567789999999999999999999987753 34455666663
No 196
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=27.98 E-value=67 Score=30.74 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHh
Q psy7645 101 LQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 101 ~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f 141 (418)
.+.++++++.. .++.|+|.||.....++++.|.+.+
T Consensus 247 ~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 34445555543 3688999999999999999998876
No 197
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=27.15 E-value=1.4e+02 Score=28.21 Aligned_cols=44 Identities=20% Similarity=0.182 Sum_probs=34.5
Q ss_pred HHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
....+...++++|++++++++||+.+++..++-+ +.+.+.+.++
T Consensus 221 ~~~~~~~~i~~~l~~~g~~~~di~~~~~h~~~~~---~~~~~~~~lg 264 (320)
T cd00830 221 AVRLMPESIEEALEKAGLTPDDIDWFVPHQANLR---IIEAVAKRLG 264 (320)
T ss_pred HHHhhHHHHHHHHHHcCCCHHHCCEEEECCCCHH---HHHHHHHHhC
Confidence 4456678899999999999999999999988643 3455666664
No 198
>PRK08868 flagellar protein FlaG; Provisional
Probab=26.52 E-value=1.6e+02 Score=24.80 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=33.4
Q ss_pred eeEEEEEecCC-ceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHH
Q psy7645 260 KIDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 312 (418)
Q Consensus 260 ~i~v~~~id~~-g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~ 312 (418)
...+.|++|.+ |.+.|++.|..||+..+ .+.+|++-++.+.+.++
T Consensus 88 n~~L~F~vdeetgr~VVkViD~~T~EVIR--------QIP~Ee~L~la~~l~e~ 133 (144)
T PRK08868 88 NKGLSFRVDEESGRDVVTIYEASTGDIIR--------QIPDEEMLEVLRRLAEQ 133 (144)
T ss_pred cCceEEEEecCCCCEEEEEEECCCCceee--------eCCCHHHHHHHHHHHHh
Confidence 35789999987 78889999999987432 36678877777666543
No 199
>KOG2196|consensus
Probab=26.51 E-value=5.1e+02 Score=23.84 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q psy7645 349 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMP 390 (418)
Q Consensus 349 ~~e~~~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~~ 390 (418)
..+..++..+--....||+++ ...++.+++.++++.+.
T Consensus 214 ~~qi~Kilnah~~sLqwl~d~----st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 214 IIQIEKILNAHMDSLQWLDDN----STQLEKKLDKIKKLKDD 251 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcc
Confidence 445566777777778899985 45678888988887753
No 200
>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase
Probab=26.25 E-value=96 Score=31.35 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH--HHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS--LLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~--~l~~~f~~ 143 (418)
....++++++++++++++|+.|.+.|-+|..--..| .+.+.|++
T Consensus 301 ~~~a~~~Al~~Agi~~~dId~ve~hgtgt~~~D~~E~~ai~~~~~~ 346 (437)
T PLN02836 301 AVLAMTRALQQSGLHPNQVDYVNAHATSTPLGDAVEARAIKTVFSE 346 (437)
T ss_pred HHHHHHHHHHHcCCCHhHcCEEEccCCcCcCcCHHHHHHHHHHhcc
Confidence 456789999999999999999999998886554444 58888864
No 201
>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.08 E-value=1.8e+02 Score=29.28 Aligned_cols=46 Identities=22% Similarity=0.266 Sum_probs=39.5
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH--HHHHHhcC
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS--LLQNFFCG 143 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~--~l~~~f~~ 143 (418)
+-...+++.+|+++++++++|++|-.-|=||..--..| .|+..|+.
T Consensus 276 ~Ga~~am~~AL~~Agl~~~~idYinaHgTsT~~nD~~E~~ai~~vfg~ 323 (412)
T COG0304 276 EGAIRAMRAALADAGLTPEDIDYINAHGTSTPANDKAESLAIKRVFGE 323 (412)
T ss_pred chHHHHHHHHHHHcCCCHhHCCEEeCCCccCCCccHHHHHHHHHHhcc
Confidence 34568999999999999999999999999998887776 57889974
No 202
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=25.70 E-value=41 Score=28.11 Aligned_cols=44 Identities=23% Similarity=0.281 Sum_probs=31.6
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHH
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQN 139 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~ 139 (418)
++.++..+-..+.|++.|+..++|+ ++-|=|+--+|++-+.+.+
T Consensus 13 ~i~~~L~~ga~~~l~~~g~~~~~i~-v~~VPGa~EiP~a~~~l~~ 56 (138)
T TIGR00114 13 DITDMLLKGAIDALKRLGAEVDNID-VIWVPGAFELPLAVKKLAE 56 (138)
T ss_pred HHHHHHHHHHHHHHHHcCCCccceE-EEECCcHHHHHHHHHHHHh
Confidence 4455556666677778887766554 5589999999998877653
No 203
>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional
Probab=25.61 E-value=96 Score=31.12 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=36.1
Q ss_pred hHHHHHHHHHH-cCCCccccceEEEecCCCCcH--HHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQD-AKLDKSAIHDVVLVGGSTRIP--KVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~-~~~~~~~i~~V~lvGGssriP--~v~~~l~~~f~~ 143 (418)
....++++|++ +++++++||.|.+.|=++..- .=.+.+.+.|++
T Consensus 285 ~~~ai~~Al~~~Agi~~~dId~ie~hgtgt~~~D~~E~~al~~~~~~ 331 (421)
T PTZ00050 285 ARRCMENALKDGANININDVDYVNAHATSTPIGDKIELKAIKKVFGD 331 (421)
T ss_pred HHHHHHHHHHhccCCChhhCCEEECCCccCCCCCHHHHHHHHHHhcc
Confidence 45788999999 999999999999999888554 333678899964
No 204
>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.
Probab=25.42 E-value=1.1e+02 Score=30.36 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=37.4
Q ss_pred HhhHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 98 RSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
......++++|+++++++++|+.|..-|=++.. +.=.+.+++.|+.
T Consensus 274 ~~~~~a~~~Al~~Agi~~~dId~i~~hgtgt~~~D~~E~~ai~~~~~~ 321 (407)
T cd00828 274 KGIARAIRTALAKAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGA 321 (407)
T ss_pred HHHHHHHHHHHHHcCCCHHHcCEEecccccCccccHHHHHHHHHHHhc
Confidence 344678899999999999999999999988876 4445678888864
No 205
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=25.10 E-value=1e+02 Score=24.95 Aligned_cols=30 Identities=13% Similarity=0.364 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEe
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLV 124 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lv 124 (418)
.+.+.+.+++..+++..+++++||-+|+++
T Consensus 17 ~I~~at~eLl~~i~~~N~l~~edivSv~FT 46 (117)
T cd02185 17 EILEATRELLEEIIERNNIKPEDIISVIFT 46 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 345677788888899999999999888764
No 206
>PRK06158 thiolase; Provisional
Probab=24.93 E-value=1.9e+02 Score=28.69 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
..+.++++|+++++++.+||.|++.......|. ..+.+.+|
T Consensus 32 ~~eA~~~Al~dAgl~~~dID~iv~~~~~~~~~~--~~la~~lG 72 (384)
T PRK06158 32 LAQAAHRALADAGLTMADVDGLFTASPDDALWG--LSVAEYLG 72 (384)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecCCCCCcH--HHHHHHcC
Confidence 456778899999999999999986443344453 24556664
No 207
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.74 E-value=2.9e+02 Score=25.76 Aligned_cols=66 Identities=21% Similarity=0.380 Sum_probs=42.9
Q ss_pred cceEEEecCCCCcHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhCCCCccccceEEEeecceeeEEEEeCCeE
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVM 197 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~~~~~~~~~~~~~d~~~~sigi~~~~~~~ 197 (418)
|-.++.-|=-+.+|++-+..+ .|. ..-.|. -.|-|++|..+++ ..++++.|+++.++.+...+|..
T Consensus 110 ipa~liPGlHr~~~clD~rfr-vfS-----H~aSpE---Klgiay~a~~~~g-----~ed~VvsDiSSNTVtllvkdGkv 175 (332)
T COG4020 110 IPAYLIPGLHRGLPCLDERFR-VFS-----HVASPE---KLGIAYLAYLLSG-----SEDFVVSDISSNTVTLLVKDGKV 175 (332)
T ss_pred CCeeecccccCCCcccChhhh-hhh-----ccCCHH---HhhHHHHHHHHcC-----ccceEEEeccCCeEEEEEEcCeE
Confidence 445555555555666666665 442 112333 3688999998887 36889999999888777666553
No 208
>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2.3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....
Probab=24.57 E-value=3.9e+02 Score=24.38 Aligned_cols=70 Identities=23% Similarity=0.175 Sum_probs=46.4
Q ss_pred HHHhhHHHHHHHHHHcCCCccccceEEEecC-CCCcHHHHHHHHHHhc-CCccc-ccCCchhhHHhhHHHHHH
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIHDVVLVGG-STRIPKVQSLLQNFFC-GKSLN-LSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG-ssriP~v~~~l~~~f~-~~~~~-~~~~pdeaVA~GAa~~a~ 165 (418)
-..-..+.++++|+++|.++.+|++|+.|=- +-..|.+--.|.+.+| ...+. ..++..-|.+-.+++..+
T Consensus 100 a~~L~~~Aa~~AL~~~g~~~~dIthlv~vs~TG~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~A 172 (226)
T PF00195_consen 100 APPLAEEAARKALAEAGLDPSDITHLVTVSCTGIAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLRRA 172 (226)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGECEEEEEESSSSECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcccceEEEEecCCcCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHHHH
Confidence 3444567788899999999999999998762 2468999999998885 12222 245666666666666443
No 209
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=24.50 E-value=1.5e+02 Score=24.15 Aligned_cols=48 Identities=10% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHhhHHHHHHHHHHcCCCccccce-EEEecCCCCcHHHHHHHHHHhcC
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIHD-VVLVGGSTRIPKVQSLLQNFFCG 143 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~~-V~lvGGssriP~v~~~l~~~f~~ 143 (418)
-...+.+-|+.+|+++|.+.+||-. .+.+=..+..+.+.+...++|+.
T Consensus 51 Q~~~~l~ni~~iL~~aG~~~~dvv~~~iyl~d~~~~~~~~~~~~~~f~~ 99 (127)
T TIGR03610 51 QTRHVLETIKSVIETAGGTMDDVTFNHIFIRDWADYAAINEVYAEYFPG 99 (127)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHHHcCC
Confidence 3445666677888999999988743 23334456888898988899963
No 210
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.49 E-value=7.6e+02 Score=25.20 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHh----hhhHHHHHHHHHHhhHHHHHHHHHHHHHh
Q psy7645 301 EIDRMINDAERYK----DEDERQKERISARNNLEAYVFNVKQALDN 342 (418)
Q Consensus 301 ei~~~~~~~~~~~----~~D~~~r~~~~arN~LE~~iy~~r~~L~~ 342 (418)
++.++++.+.++. .-+++.|....--|.+++|+..|+.+...
T Consensus 282 ~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 282 NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344444444433 34555666666778888888888887653
No 211
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=24.43 E-value=1.1e+02 Score=24.84 Aligned_cols=30 Identities=7% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEe
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLV 124 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lv 124 (418)
.+.+.+.+++..+++..+++++||-+|++.
T Consensus 17 ~I~~at~eLl~~ii~~N~l~~edivSv~FT 46 (117)
T TIGR01796 17 EIGEAVAELLTELMERNELTPEDLISVIFT 46 (117)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEE
Confidence 345677788888899999999999888764
No 212
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=24.33 E-value=3.2e+02 Score=28.83 Aligned_cols=45 Identities=16% Similarity=0.314 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCC-CCC-HHHHHHHHHHHHHHHHHHH
Q psy7645 348 TESEKSRCREECDATLKWLDNNT-LAD-KEEYQDKLQQLQKSCMPLM 392 (418)
Q Consensus 348 ~~~e~~~i~~~l~~~~~WL~~~~-~a~-~~e~~~kl~~L~~~~~~i~ 392 (418)
...+...+...|..+.+||+.-. ..+ .+...++.+.|++.+..++
T Consensus 521 ~~~~IA~~LsQLKrVNdWLD~v~~~~~~~~~~~E~ierLrkKIY~fL 567 (579)
T PF06075_consen 521 DDGQIAGMLSQLKRVNDWLDEVGSGSNESEELVETIERLRKKIYGFL 567 (579)
T ss_pred CCcchHHHHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHH
Confidence 34556679999999999999643 222 3456677777777766555
No 213
>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=24.30 E-value=1.7e+02 Score=29.20 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCcHHH--HHHHHHHhc
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV--QSLLQNFFC 142 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v--~~~l~~~f~ 142 (418)
.....++++|+++++ +++||+|..-|-+|..-=. ...|++.|+
T Consensus 281 ~~~~am~~AL~~Agl-~~~IdyI~ahgtgT~~~D~~E~~Ai~~~f~ 325 (398)
T PRK06519 281 DLEASLERLLKPAGG-LAAPTAVISGATGAHPATAEEKAALEAALA 325 (398)
T ss_pred HHHHHHHHHHHHCCC-cccCCEEEeCCCCCCCccHHHHHHHHHHcC
Confidence 346789999999999 7999999999988877433 447888885
No 214
>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III. Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.
Probab=24.23 E-value=1.8e+02 Score=27.56 Aligned_cols=45 Identities=22% Similarity=0.164 Sum_probs=34.5
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHhc
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f~ 142 (418)
..+..+.+.++++|+++++++++|+.+++..++.+ +.+.+.+.++
T Consensus 216 ~~~~~~~~~~~~~l~~~g~~~~di~~~~~h~~~~~---~~~~~~~~lg 260 (318)
T TIGR00747 216 HAVRKMGDVVEETLEANGLDPEDIDWFVPHQANLR---IIEALAKRLE 260 (318)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHH---HHHHHHHHcC
Confidence 34455677889999999999999999999888643 4455666663
No 215
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=24.05 E-value=2.4e+02 Score=21.52 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHH
Q psy7645 348 TESEKSRCREECDATLKWLDNNT-LADKEEYQ 378 (418)
Q Consensus 348 ~~~e~~~i~~~l~~~~~WL~~~~-~a~~~e~~ 378 (418)
-|.-..+|..++.++++||.... ..+.+++.
T Consensus 57 ipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 57 IPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 35567889999999999998643 34444443
No 216
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.80 E-value=87 Score=30.52 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=7.3
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q psy7645 373 DKEEYQDKLQQLQKSCMPL 391 (418)
Q Consensus 373 ~~~e~~~kl~~L~~~~~~i 391 (418)
+++...+++.+-++.+-|+
T Consensus 23 ~Kd~V~~~I~ea~~sILPl 41 (379)
T PF11593_consen 23 SKDSVMDKISEAQDSILPL 41 (379)
T ss_pred hHHHHHHHHHHHHhccccH
Confidence 3333333333333333333
No 217
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=23.76 E-value=2.5e+02 Score=28.06 Aligned_cols=36 Identities=14% Similarity=0.278 Sum_probs=28.0
Q ss_pred cccceEEEecCCC-CcHHHHHHHHHHhcCCcccccCCch
Q psy7645 116 SAIHDVVLVGGST-RIPKVQSLLQNFFCGKSLNLSINPD 153 (418)
Q Consensus 116 ~~i~~V~lvGGss-riP~v~~~l~~~f~~~~~~~~~~pd 153 (418)
..+|.|+++||-. ..+.|++.|.+.+. -+...+|+.
T Consensus 322 g~vDaiVfTGGIgE~s~~lr~~I~~~l~--~lGi~lD~~ 358 (402)
T PRK00180 322 GRLDAIVFTAGIGENSALVREKVLEGLE--FLGIELDPE 358 (402)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHhhhh--hcCeeeCHH
Confidence 3599999999999 99999999998773 233445543
No 218
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=23.74 E-value=1.9e+02 Score=27.66 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=33.7
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHHHh
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQNFF 141 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~~f 141 (418)
...+..+.+.++++|++++++++||+.+++.=++ +.+.+.+.+.+
T Consensus 223 ~~~~~~~~~~~~~~L~~~gl~~~did~~~~h~~~---~~~~~~~~~~l 267 (326)
T PRK05963 223 TEAVRMMSGASQNVLASAAMTPQDIDRFFPHQAN---ARIVDKVCETI 267 (326)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEeCCCC---HHHHHHHHHHc
Confidence 3344555677899999999999999999997777 44455556665
No 219
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.47 E-value=1.6e+02 Score=22.94 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccc--eEEEecCCCCcHHHHHHHHHHhcC
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIH--DVVLVGGSTRIPKVQSLLQNFFCG 143 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~--~V~lvGGssriP~v~~~l~~~f~~ 143 (418)
.-...+.+-|+.+|+++|.+.++|- .|+++. ....+.+.+...++|+.
T Consensus 29 ~Q~~~~~~nl~~~L~~~G~~~~dvvk~~vyl~d-~~~~~~~~~~~~~~f~~ 78 (105)
T cd06150 29 GQTRQVLAKIDALLAEAGSDKSRILSATIWLAD-MADFAAMNAVWDAWVPP 78 (105)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEcc-HHHHHHHHHHHHHHcCC
Confidence 3455667777888999999998874 335554 56778888888888863
No 220
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=23.41 E-value=1.7e+02 Score=23.39 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHcCCCccccce--EEEecCCCCcHHHHHHHHHHhcC
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHD--VVLVGGSTRIPKVQSLLQNFFCG 143 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~--V~lvGGssriP~v~~~l~~~f~~ 143 (418)
...+.+-++.+|+.+|.+.++|-. |+++. ....+.+.+...++|++
T Consensus 46 ~~~~~~ni~~~L~~aG~~~~dVvk~~vyl~d-~~~~~~~~~~~~~~f~~ 93 (119)
T cd06154 46 TRQCLEIIEAALAEAGASLEDVVRTRMYVTD-IADFEAVGRAHGEVFGD 93 (119)
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEEEEEECC-HHHHHHHHHHHHHHcCC
Confidence 344556666778888998888743 34444 56777888888888864
No 221
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=23.38 E-value=1.2e+02 Score=30.37 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=36.1
Q ss_pred HHHHHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHH
Q psy7645 87 ARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV 133 (418)
Q Consensus 87 ~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v 133 (418)
+.++.+-+-+++.+..++.+++.++++++++|..+.++|=++..-++
T Consensus 53 ~~~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLl 99 (412)
T PF14574_consen 53 EGLEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLL 99 (412)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHH
Confidence 44777777888888999999999999999999999999965544433
No 222
>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=23.26 E-value=2.7e+02 Score=26.42 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=33.9
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCC--CcHHHHHHHHHHhc
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGST--RIPKVQSLLQNFFC 142 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss--riP~v~~~l~~~f~ 142 (418)
.+-....++++|+++++.+++||.|++..++. ..|.....|...+|
T Consensus 53 ~~la~~A~~~al~~agl~~~~id~vi~~~~~~~~~~~~~~~~i~~~lG 100 (319)
T PRK09352 53 SDLATEAAKKALEAAGIDPEDIDLIIVATTTPDYAFPSTACLVQARLG 100 (319)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEcCCCCCCCchHHHHHHHHhC
Confidence 33456778899999999999999988643321 26767777888886
No 223
>PRK06366 acetyl-CoA acetyltransferase; Provisional
Probab=23.23 E-value=2.5e+02 Score=27.85 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCCCccccceEEE
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVL 123 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~l 123 (418)
....++.+|+++++++++||.|++
T Consensus 30 ~~~a~~~al~dagi~~~dID~vi~ 53 (388)
T PRK06366 30 GGAAIKAVIDDAKLDPALVQEVIM 53 (388)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE
Confidence 356778889999999999999985
No 224
>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.
Probab=22.98 E-value=2e+02 Score=28.60 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
.....++++|+++++++++|++|..-|=+|.. +.=.+.|++.|+.
T Consensus 271 ~~~~a~~~al~~ag~~~~~i~~v~~hgtgt~~~D~~E~~al~~~fg~ 317 (399)
T cd00832 271 GLARAIRLALADAGLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP 317 (399)
T ss_pred HHHHHHHHHHHHcCCCHHHccEEEeccCcCCCCCHHHHHHHHHHhCC
Confidence 44678899999999999999999999977765 4555688999964
No 225
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=22.96 E-value=1.7e+02 Score=26.69 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=32.7
Q ss_pred HHHHhHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHHHHHH
Q psy7645 90 EELCSDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQSLLQN 139 (418)
Q Consensus 90 e~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~~l~~ 139 (418)
+++.+.+.+.+...+++.+++.+ .-.|.|.||+|-.++.+.+...
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 34555556666777777776543 3579999999999998888754
No 226
>smart00825 PKS_KS Beta-ketoacyl synthase. The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.
Probab=22.94 E-value=1.3e+02 Score=29.90 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCCCc--HHHHHHHHHHhcC
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGSTRI--PKVQSLLQNFFCG 143 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGssri--P~v~~~l~~~f~~ 143 (418)
....++++|+++++++++||.|...|-++.. ..=.+.|++.|+.
T Consensus 281 ~~~a~~~al~~Agl~~~dId~i~~h~tgt~~~d~~E~~al~~~~~~ 326 (424)
T smart00825 281 QARLIRQALARAGVDPADVDYVEAHGTGTPLGDPIEAEALAAVFGQ 326 (424)
T ss_pred HHHHHHHHHHHhCCCHHHccEEEeeCCCCCCCCHHHHHHHHHHHhc
Confidence 4578899999999999999999999988874 3334578888853
No 227
>KOG3133|consensus
Probab=22.89 E-value=4.3e+02 Score=24.61 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHHH
Q psy7645 353 SRCREECDATLKWLDNNTL----ADKEEYQDKLQQLQKSCMPLM 392 (418)
Q Consensus 353 ~~i~~~l~~~~~WL~~~~~----a~~~e~~~kl~~L~~~~~~i~ 392 (418)
..+++...++=.||.+|+. .+.+-|+.+.+-++.++.+..
T Consensus 163 eplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~~e 206 (267)
T KOG3133|consen 163 EPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESVYE 206 (267)
T ss_pred hhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577778888888887753 245567777666666655544
No 228
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=22.87 E-value=7.2e+02 Score=26.30 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=25.1
Q ss_pred HHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy7645 360 DATLKWLDNN----TLADKEEYQDKLQQLQKSCMPLMSK 394 (418)
Q Consensus 360 ~~~~~WL~~~----~~a~~~e~~~kl~~L~~~~~~i~~r 394 (418)
+++++++..- ...+...+++++++|+..+.+.+.+
T Consensus 538 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (595)
T PRK01433 538 SIINSLLDNIKEAVHARDIILINNSIKEFKSKIKKSMDT 576 (595)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555432 2468899999999999999995544
No 229
>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.
Probab=22.73 E-value=3e+02 Score=26.81 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=35.4
Q ss_pred HHHhhHHHHHHHHHHcCCCccccceEEEecCC-CCcHHHHHHHHHHhc
Q psy7645 96 LFRSTLQPVEKALQDAKLDKSAIHDVVLVGGS-TRIPKVQSLLQNFFC 142 (418)
Q Consensus 96 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGs-sriP~v~~~l~~~f~ 142 (418)
..+-..+.++++|+++++++++||.|+.+..+ -..|.+...|...+|
T Consensus 85 ~~~la~~Aa~~aL~~a~~~~~~Id~li~~s~~~~~~P~~a~~i~~~lg 132 (361)
T cd00831 85 ARELAEEAARGALDEAGLRPSDIDHLVVNTSTGNPTPSLDAMLINRLG 132 (361)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 34445678899999999999999999876422 246667778888885
No 230
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=22.69 E-value=1.4e+02 Score=31.00 Aligned_cols=63 Identities=17% Similarity=0.107 Sum_probs=45.9
Q ss_pred hHHHHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHHH------HHHHHhcCCcccccCCchhhHHh
Q psy7645 94 SDLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQS------LLQNFFCGKSLNLSINPDEAVAY 158 (418)
Q Consensus 94 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~~------~l~~~f~~~~~~~~~~pdeaVA~ 158 (418)
....+.+...|+++|+++++++.+||.|-...|....+.++- .|...+ +. +...++..+|=|.
T Consensus 46 ~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~gPg~~~~l~vg~~~ak~la~~~-~~-~~~~v~h~~aH~~ 114 (535)
T PRK09605 46 EHHAEAIPKVIKEALEEAGLKPEDIDLVAFSQGPGLGPCLRVVATAARALALSL-DV-PLIGVNHCVAHVE 114 (535)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHhhCCEEEECCCCCcHhhHHHHHHHHHHHHHHh-CC-CeecccHHHHHHH
Confidence 345566778889999999999999999999999888888773 334444 23 3455666665554
No 231
>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.
Probab=22.68 E-value=2.4e+02 Score=27.86 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcCCCccccceEEEec---CCCCcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVG---GSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvG---GssriP~v~~~l~~~f~ 142 (418)
..+.++++|+++++++++||.|++ | +....|..-..+...+|
T Consensus 26 a~~A~~~AL~dAgl~~~dID~vi~-~~~~~~~~~~~~a~~v~~~lG 70 (386)
T cd00751 26 GAAVIKALLERAGLDPEEVDDVIM-GNVLQAGEGQNPARQAALLAG 70 (386)
T ss_pred HHHHHHHHHHhcCCCHHHCCEEEE-EeccCCCCCChHHHHHHHHcC
Confidence 356778889999999999999985 3 11123555445666664
No 232
>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.
Probab=22.67 E-value=4.6e+02 Score=25.76 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=28.3
Q ss_pred EEeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccce
Q psy7645 82 TKISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIHD 120 (418)
Q Consensus 82 ~~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~~ 120 (418)
..+++.++..+ .+...-....+.++|+++++++.+++.
T Consensus 58 ~~~~~~~~~~~-~~~~~l~~~aa~~AL~dAgl~~~~~~~ 95 (406)
T cd00834 58 DYLDRKELRRM-DRFAQFALAAAEEALADAGLDPEELDP 95 (406)
T ss_pred hcCCHHHhccC-CHHHHHHHHHHHHHHHHcCCCcccCCc
Confidence 45677666643 566677788899999999999876553
No 233
>PRK07738 flagellar protein FlaG; Provisional
Probab=22.55 E-value=2.2e+02 Score=23.03 Aligned_cols=44 Identities=11% Similarity=0.225 Sum_probs=32.4
Q ss_pred eEEEEEecCC-ceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHHH
Q psy7645 261 IDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 312 (418)
Q Consensus 261 i~v~~~id~~-g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~~ 312 (418)
..+.|++|.. |.+.|...|..||+... .+.++++-++.+.+.++
T Consensus 64 ~~L~F~vdeet~~~vVkVvD~~T~EVIR--------QIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 64 TSLKFELHEKLNEYYVQVVDERTNEVIR--------EIPPKKLLDMYAAMMEF 108 (117)
T ss_pred CceEEEEecCCCcEEEEEEECCCCeeee--------eCCCHHHHHHHHHHHHH
Confidence 4789999886 88999999999886432 36677777776665543
No 234
>PRK13690 hypothetical protein; Provisional
Probab=22.54 E-value=1.4e+02 Score=26.10 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHHHHHcCCCccccceEEEecCCC
Q psy7645 95 DLFRSTLQPVEKALQDAKLDKSAIHDVVLVGGST 128 (418)
Q Consensus 95 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGss 128 (418)
.+-+.+...+.++++.+++.+ ..++++|.||
T Consensus 5 ~i~~~~~~~~~El~~~a~l~~---g~i~VvGcST 35 (184)
T PRK13690 5 EIKKQTRQILEELLEQANLKP---GQIFVLGCST 35 (184)
T ss_pred HHHHHHHHHHHHHHHhhCCCC---CCEEEEecch
Confidence 355667788889999999987 6689999887
No 235
>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.01 E-value=2.7e+02 Score=27.44 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCC--CCcHHHHHHHHHHhc
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGS--TRIPKVQSLLQNFFC 142 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGs--sriP~v~~~l~~~f~ 142 (418)
-..+.++++|+++++++++||.|++.-.+ ..+|..-..|...+|
T Consensus 66 La~~A~~~aL~~agi~~~dId~li~~s~~~~~~~p~~a~~v~~~Lg 111 (378)
T PRK06816 66 MAAEAIRDLLDDAGFSLGDIELLACGTSQPDQLMPGHASMVHGELG 111 (378)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEEECCCCcCChHHHHHHHhhCC
Confidence 34567888999999999999998775433 245765566777775
No 236
>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II
Probab=21.98 E-value=1.4e+02 Score=31.09 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCcHHHH--HHHHHHhcC
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKVQ--SLLQNFFCG 143 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v~--~~l~~~f~~ 143 (418)
.....++++|+++++++++|++|..-|=+|..-=.. ..|.+.|+.
T Consensus 406 g~~~am~~AL~~AGl~p~dIdyInaHGTGT~~gD~~E~~Ai~~~Fg~ 452 (540)
T PLN02787 406 GVILCIEKALAQSGVSKEDVNYINAHATSTKAGDLKEYQALMRCFGQ 452 (540)
T ss_pred HHHHHHHHHHHHcCCCHHHCcEEEccCccCCCCCHHHHHHHHHHhCC
Confidence 356789999999999999999999999888764433 468889964
No 237
>PRK10972 Z-ring-associated protein; Provisional
Probab=21.64 E-value=4.2e+02 Score=21.14 Aligned_cols=71 Identities=10% Similarity=0.131 Sum_probs=51.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy7645 322 RISARNNLEAYVFNVKQALDNAGNKLTESEKSRCREECDATLKWLDNNT--LADKEEYQDKLQQLQKSCMPLMSKMHG 397 (418)
Q Consensus 322 ~~~arN~LE~~iy~~r~~L~~~~~~~~~~e~~~i~~~l~~~~~WL~~~~--~a~~~e~~~kl~~L~~~~~~i~~r~~e 397 (418)
...|-+.|..-+-++|+. ..+...|+-.+..+|+=+-++|.... .....+++.++..|.+.++..+....+
T Consensus 27 L~~AA~~Ld~km~~ir~~-----~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~~~~ 99 (109)
T PRK10972 27 LNQAAEDLNQRLQDLKER-----TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLEQGR 99 (109)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 334445566666666653 45677788899999999999998532 245678999999999999998875433
No 238
>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=21.64 E-value=1.4e+02 Score=30.04 Aligned_cols=44 Identities=25% Similarity=0.202 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHcCCCccccceEEEecCCCCcHHH--HHHHHHHhc
Q psy7645 99 STLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPKV--QSLLQNFFC 142 (418)
Q Consensus 99 ~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~v--~~~l~~~f~ 142 (418)
.....++++|+++++++++|++|...|-+|...-. ...|.+.|+
T Consensus 290 ~~~~ai~~AL~~agi~p~dId~i~~Hgtgt~~~d~~E~~al~~~~~ 335 (425)
T PRK06501 290 PAIGAIRAALADAGLTPEQIDYINAHGTSTPENDKMEYLGLSAVFG 335 (425)
T ss_pred HHHHHHHHHHHHcCCCHHHcCEEEecCccCcchHHHHHHHHHHHhc
Confidence 35678999999999999999999999988876433 335777885
No 239
>PRK08452 flagellar protein FlaG; Provisional
Probab=21.57 E-value=2.4e+02 Score=23.10 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=31.0
Q ss_pred eEEEEEecCC-ceEEEEEEecCCCccceeeeccCCCCCCHHHHHHHHHHHHH
Q psy7645 261 IDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 311 (418)
Q Consensus 261 i~v~~~id~~-g~l~v~~~~~~~g~~~~i~i~~~~~~ls~eei~~~~~~~~~ 311 (418)
..+.|.+|.. +.+.|++.|..||+..+ .++++++-++.+.+.+
T Consensus 71 ~~L~F~~de~~~~~vVkVvD~~T~eVIR--------qIP~Ee~L~l~~~m~e 114 (124)
T PRK08452 71 TNIRFGYNDKIKGLVVSVKEANGGKVIR--------EIPSKEAIELMEYMRD 114 (124)
T ss_pred CceEEEEcCCCCcEEEEEEECCCCceee--------eCCCHHHHHHHHHHHH
Confidence 4788999876 67889999999887432 3566777776655544
No 240
>KOG0774|consensus
Probab=21.52 E-value=6.7e+02 Score=23.37 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=16.3
Q ss_pred cCCCCHHHHHHHHHH----HHHHHHHHhc
Q psy7645 344 GNKLTESEKSRCREE----CDATLKWLDN 368 (418)
Q Consensus 344 ~~~~~~~e~~~i~~~----l~~~~~WL~~ 368 (418)
.++-++++|+.+-.. +.....|+-+
T Consensus 213 nPYPSee~K~eLAkqCnItvsQvsnwfgn 241 (334)
T KOG0774|consen 213 NPYPSEEAKEELAKQCNITVSQVSNWFGN 241 (334)
T ss_pred CCCCcHHHHHHHHHHcCceehhhcccccc
Confidence 466677777766654 4567777764
No 241
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=21.46 E-value=3.1e+02 Score=21.84 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=34.0
Q ss_pred HHhhHHHHHHHHHHcCCCccccc-eEEEecCCCCcHHHHHHHHHHhcCC
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIH-DVVLVGGSTRIPKVQSLLQNFFCGK 144 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~-~V~lvGGssriP~v~~~l~~~f~~~ 144 (418)
...+.+-|+++|+.+|.+.+||- ..+.+-.....+.+.+...++|+..
T Consensus 45 ~~~~l~ni~~~L~~~G~~~~dvv~~~~yl~d~~~~~~~~~v~~~~f~~~ 93 (121)
T PF01042_consen 45 TRQALDNIERILAAAGASLDDVVKVTVYLTDMSDFPAVNEVWKEFFPDH 93 (121)
T ss_dssp HHHHHHHHHHHHHHTTS-GGGEEEEEEEESSGGGHHHHHHHHHHHSTSS
T ss_pred HHHHHHhhhhhhhcCCCcceeEeeeeehhhhhhhhHHHHHHHHHHhccc
Confidence 34556677888999999998873 2334445666899999999999644
No 242
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=21.41 E-value=3.1e+02 Score=27.98 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred HhhHHHHHHHHHHcCCCcccc--ceEEEecCCCCcHHHHHHHHH
Q psy7645 98 RSTLQPVEKALQDAKLDKSAI--HDVVLVGGSTRIPKVQSLLQN 139 (418)
Q Consensus 98 ~~~~~~i~~~l~~~~~~~~~i--~~V~lvGGssriP~v~~~l~~ 139 (418)
+.+..+|++-.+.|++++++| +.++++|.++++-=+++.++.
T Consensus 66 ~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~ 109 (475)
T PRK10719 66 AAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMA 109 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHH
Confidence 567788899999999999988 599999999999999999986
No 243
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=21.11 E-value=5.2e+02 Score=22.00 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q psy7645 354 RCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCM 389 (418)
Q Consensus 354 ~i~~~l~~~~~WL~~~~~a~~~e~~~kl~~L~~~~~ 389 (418)
...+.++++.+-|++-.+| ||++++-.|+++++
T Consensus 51 nyk~ki~eLke~lK~~~NA---Eleekll~lq~lfq 83 (160)
T PF03978_consen 51 NYKKKINELKEDLKDVSNA---ELEEKLLKLQKLFQ 83 (160)
T ss_pred HHHHHHHHHHHHHHHhhhH---HHHHHHHHHHHHHH
Confidence 3333344444444432222 44444444444444
No 244
>KOG0679|consensus
Probab=20.99 E-value=80 Score=31.06 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=32.3
Q ss_pred cceEEEecCCCCcHHHHHHHHHHh----cCCccc-----ccCCchhhHHhhHHHHHH
Q psy7645 118 IHDVVLVGGSTRIPKVQSLLQNFF----CGKSLN-----LSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 118 i~~V~lvGGssriP~v~~~l~~~f----~~~~~~-----~~~~pdeaVA~GAa~~a~ 165 (418)
...|+++||.|.||.+.++|.+.+ ++.++. .++.-.-++=+|+.++|.
T Consensus 342 ~~nVivtGGtSliqG~s~RL~~ELs~~~P~srlki~as~~t~eR~~~~WlGGSILAS 398 (426)
T KOG0679|consen 342 LGNVIVTGGTSLIQGFSERLNKELSKRAPSSRLKIIASGHTVERRFQSWLGGSILAS 398 (426)
T ss_pred hccEEEecCcchhhhHHHHHHHHHHHhCCcceEEEEecCceeeehhhhhhhhHHHhc
Confidence 369999999999999988877655 333221 223334566677777664
No 245
>PRK06205 acetyl-CoA acetyltransferase; Provisional
Probab=20.83 E-value=2.7e+02 Score=27.80 Aligned_cols=43 Identities=12% Similarity=0.145 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHcCCCccccceEEEec--CCCCcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVG--GSTRIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvG--GssriP~v~~~l~~~f~ 142 (418)
....++++|+++++++++||.|++-- +....|.+...+....|
T Consensus 30 a~~A~~~AL~~agl~~~dID~vv~g~~~~~~~~~~~a~~va~~~G 74 (404)
T PRK06205 30 AATVIRALVERTGIDPARIDDVIFGQGYPNGEAPAIGRVAALDAG 74 (404)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEEeccCCCCCChHHHHHHHHcC
Confidence 35677888999999999999987421 11123555556666664
No 246
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.76 E-value=9e+02 Score=26.63 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhcC
Q psy7645 47 LRRLRTAAERAKRTLS 62 (418)
Q Consensus 47 ~~~L~~~~e~~K~~LS 62 (418)
..+++..+..+|..|.
T Consensus 92 i~~~l~~~~~l~~~l~ 107 (782)
T PRK00409 92 IAKTLRYFRQLKRFIE 107 (782)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555566666654
No 247
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=20.51 E-value=1.1e+02 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=28.2
Q ss_pred cccceEEEecCCCC-----------cHHHHHHHHHHhcCCcccccCCchhhHHhhHHHHHH
Q psy7645 116 SAIHDVVLVGGSTR-----------IPKVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 165 (418)
Q Consensus 116 ~~i~~V~lvGGssr-----------iP~v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~ 165 (418)
++.|.|++.||.+. .+.+.+.|++.... --|-.+|+.|+.+.|.
T Consensus 40 ~~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~------g~~ilgIC~G~qlLa~ 94 (219)
T PRK03619 40 DGVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEK------GKPVLGICNGFQILTE 94 (219)
T ss_pred CCCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHC------CCEEEEECHHHHHHHH
Confidence 46789999999652 24455566654421 1245677888888775
No 248
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.40 E-value=5.6e+02 Score=23.91 Aligned_cols=51 Identities=27% Similarity=0.359 Sum_probs=33.0
Q ss_pred cccceEEEecC--CCCcHH-HHHHHHHHhcCCcccccCCchhhHHhhHHHHHHHHhC
Q psy7645 116 SAIHDVVLVGG--STRIPK-VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 169 (418)
Q Consensus 116 ~~i~~V~lvGG--ssriP~-v~~~l~~~f~~~~~~~~~~pdeaVA~GAa~~a~~ls~ 169 (418)
...+.|+|.|- .-|-|+ |++.|....-.+ + ..+ |-++.|+|+|+.|.-.+.
T Consensus 267 ~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k-~-~~l-~~esaaiG~a~IA~DI~~ 320 (332)
T COG4020 267 YGCDGVVLAGSVGGDREPMDVLKRIKSKVFNK-V-AVL-PPESAAIGLALIARDIAS 320 (332)
T ss_pred cCCceEEEecccccccchhhHHHHHHHHHHHH-H-hhc-CchhhhhhhHHHHHHHHc
Confidence 56789999994 445554 777776655222 2 233 445689999998875543
No 249
>PRK04262 hypothetical protein; Provisional
Probab=20.33 E-value=1.9e+02 Score=27.97 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCCCccccceEEEecCCC---CcHHHHHHHHHHhc
Q psy7645 100 TLQPVEKALQDAKLDKSAIHDVVLVGGST---RIPKVQSLLQNFFC 142 (418)
Q Consensus 100 ~~~~i~~~l~~~~~~~~~i~~V~lvGGss---riP~v~~~l~~~f~ 142 (418)
..+.++++|+++++++++||.|+. +.++ ..|.....|...++
T Consensus 55 a~~Aa~~aL~~ag~~~~dId~li~-~s~~~~~~~p~~a~~v~~~Lg 99 (347)
T PRK04262 55 AVEAARNALKRAGIDPKEIGAVYV-GSESHPYAVKPTATIVAEALG 99 (347)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEE-EecCCCcccccHHHHHHHHcC
Confidence 456788999999999999999875 4333 33566666777775
No 250
>KOG1794|consensus
Probab=20.25 E-value=2.2e+02 Score=27.18 Aligned_cols=81 Identities=23% Similarity=0.216 Sum_probs=0.0
Q ss_pred EeCHHHHHHHHhHHHHhhHHHHHHHHHHcCCCccccc----eEEEecCCCCcHH-HHHHHHHHhcCC---cccccCCchh
Q psy7645 83 KISRARFEELCSDLFRSTLQPVEKALQDAKLDKSAIH----DVVLVGGSTRIPK-VQSLLQNFFCGK---SLNLSINPDE 154 (418)
Q Consensus 83 ~itr~~fe~l~~~~~~~~~~~i~~~l~~~~~~~~~i~----~V~lvGGssriP~-v~~~l~~~f~~~---~~~~~~~pde 154 (418)
.++|+-|.++-..|-..+...+. .+.+...+ .|++|||.-..-- +++-........ +-....-|.+
T Consensus 231 ~~~~~ifr~Ag~~Lg~~V~aVl~------~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ 304 (336)
T KOG1794|consen 231 PLSAEIFRNAGETLGRHVVAVLP------QLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKE 304 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------hcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecc
Q ss_pred hHHhhHHHHHHHHhC
Q psy7645 155 AVAYGAAVQAAILSG 169 (418)
Q Consensus 155 aVA~GAa~~a~~ls~ 169 (418)
+-|.|||++|+.+-+
T Consensus 305 ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 305 SSAVGAAILAASLDN 319 (336)
T ss_pred cchHHHHHHhhhhcc
No 251
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=20.24 E-value=6.9e+02 Score=23.09 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhcCCCceeEEEEeeccCCceeEEEeCHHHHHHHHhHHHHhhH-----------HHHHHHHHHcCCCcccc
Q psy7645 50 LRTAAERAKRTLSSSTEASIEIDALYDGIDFYTKISRARFEELCSDLFRSTL-----------QPVEKALQDAKLDKSAI 118 (418)
Q Consensus 50 L~~~~e~~K~~LS~~~~~~i~i~~~~~~~d~~~~itr~~fe~l~~~~~~~~~-----------~~i~~~l~~~~~~~~~i 118 (418)
+.+.++.+.+.=..+....+.+-.-|+| |+++.++++.+++.+. +.+.+-|...+++ ++
T Consensus 119 ~~~~i~~~e~~t~~~~~~~l~~a~nYGG--------R~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~~~~p--dp 188 (245)
T COG0020 119 VREAIEKAEEKTKNNTGLTLNIAVNYGG--------RDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSGLP--DP 188 (245)
T ss_pred HHHHHHHHHHhccCCCceEEEEeeCCCC--------HHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcccCCC--CC
Confidence 4444444444333445555555433443 7888888888877663 3444444444433 78
Q ss_pred ceEEEecCCCCcH
Q psy7645 119 HDVVLVGGSTRIP 131 (418)
Q Consensus 119 ~~V~lvGGssriP 131 (418)
|-++=+||--|+.
T Consensus 189 DLlIRTsGe~RlS 201 (245)
T COG0020 189 DLLIRTSGEQRLS 201 (245)
T ss_pred CEEEeCCCccccc
Confidence 9999999988875
No 252
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=20.09 E-value=1e+02 Score=27.94 Aligned_cols=36 Identities=31% Similarity=0.221 Sum_probs=30.2
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCCCcHH
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIPK 132 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP~ 132 (418)
.....+.+++++++++++++||+.+++.+.++.+..
T Consensus 144 ~~~~~~~i~~~l~~ag~~~~did~~~~h~~~~~~~~ 179 (254)
T cd00327 144 GEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGD 179 (254)
T ss_pred hHHHHHHHHHHHHHcCCCHHHCCEEEccCCcCcccc
Confidence 345567889999999999999999999998877543
No 253
>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).
Probab=20.03 E-value=1.1e+02 Score=29.06 Aligned_cols=45 Identities=29% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHhhHHHHHHHHHHcCCCccccceEEEecCCCCcH--HHHHHHHHHh
Q psy7645 97 FRSTLQPVEKALQDAKLDKSAIHDVVLVGGSTRIP--KVQSLLQNFF 141 (418)
Q Consensus 97 ~~~~~~~i~~~l~~~~~~~~~i~~V~lvGGssriP--~v~~~l~~~f 141 (418)
.......++++|++++++++||+.+++-+.++++- ..+..+...+
T Consensus 204 ~~~~~~~i~~al~~agl~~~did~~~~h~~~~~~~~~~e~~~~~~~~ 250 (332)
T cd00825 204 AEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVKELKLLRSEF 250 (332)
T ss_pred HHHHHHHHHHHHHHcCCCHhHCCEEEccCCCCCCCCHHHHHHHHHHh
Confidence 35566788999999999999999999999887654 3334444545
Done!